Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DEGseq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DEGseq

Identify Differentially Expressed Genes from RNA-seq data
1 version
Latest release: about 1 year ago
96,712 downloads total

Papers Mentioning DEGseq 697

10.3389/fgene.2019.00566
RNA Expression Profile and Potential Biomarkers in Patients With Spinocerebellar Ataxia Type 3 From Mainland China
Cited by: 4
Author(s): Tianjiao Li, Xiaocan Hou, Zhao Chen, Yun Peng, Puzhi Wang, Yue Xie, Lang He, Hongyu Yuan, Hongxia Peng, Rong Qiu, Kun Xia, Beisha Tang, Hong Jiang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-018-4706-x
Transcriptome analysis of chrysanthemum (Dendranthema grandiflorum) in response to low temperature stress
Cited by: 50
Author(s): Ke Wang, Zhenyu Bai, Qianyu Liang, Qinglin Liu, Lei Zhang, Yuanzhi Pan, Guangli Liu, Beibei Jiang, Fan Zhang, Jing Yin
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-020-6509-0
Dynamic transcriptome profiling exploring cold tolerance in forensically important blow fly, Aldrichina grahami (Diptera: Calliphoridae)
Cited by: 6
Author(s): Zhuoying Liu, Han Han, Fanming Meng, Yangshuai Jiang, Jifeng Cai
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13287-021-02388-5
The whole profiling and competing endogenous RNA network analyses of noncoding RNAs in adipose-derived stem cells from diabetic, old, and young patients
Cited by: 24
Author(s): Sen Ren, Hairong Xiong, Jing Chen, Xiaofan Yang, Yutian Liu, Jiahe Guo, Tao Jiang, Xu Zhao, Meng Yuan, Yang Liu, Nan Zhou, Hongrui Chen, Wenqing Li, Hans‐Günther Machens, Zhenbing Chen
Software Mentions: 1
Published: over 3 years ago
10.1186/s13287-021-02441-3
Adipose-derived stem cells therapy effectively attenuates PM2.5-induced lung injury
Cited by: 9
Author(s): Junling Gao, Jun-Tao Yuan, Qun Li, Yuanli Wang, Huiwen Wang, Yingjie Chen, Wenjun Ding, Guangju Ji, Zhigang Lu
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00536
Deep-Sequencing Identification of MicroRNA Biomarkers in Serum Exosomes for Early Pig Pregnancy
Cited by: 15
Author(s): Chunmei Zhou, Guangyan Cai, Fanming Meng, Zhiqian Xu, Yanjuan He, Qun Hu, Enqin Zheng, Sixiu Huang, Zheng Xu, Tao Gu, Bin Hu, Zhenfang Wu, Linjun Hong
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-018-4565-5
Molecular mechanisms of an antimicrobial peptide piscidin (Lc-pis) in a parasitic protozoan, Cryptocaryon irritans
Cited by: 8
Author(s): Ruan-Ni Chen, Yong Mao, Jun Wang, Min Liu, Ying Qiao, Libing Zheng, Yongquan Su, Qiaozhen Ke, Weiqiang Zheng
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-12-186
A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs
Cited by: 86
Author(s): Tingting Li, Rimao Wu, Yong Zhang, Dahai Zhu
Software Mentions: 1
Published: over 13 years ago
10.3389/fgene.2021.599350
Analysis of MicroRNAs Associated With Carotid Atherosclerotic Plaque Rupture With Thrombosis
Cited by: 4
Author(s): Peng Nie, Fan Yang, Fang Wan, Shuxuan Jin, Jun Pu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-015-1658-2
Genome-wide transcriptomic analysis of a superior biomass-degrading strain of A. fumigatus revealed active lignocellulose-degrading genes
Cited by: 35
Author(s): Youzhi Miao, Dongyang Liu, Guangqi Li, Li Pan, Yangchun Xu, Qirong Shen, Ruifu Zhang
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-016-3127-y
De novo assembly and transcriptome characterization of spruce dwarf mistletoe Arceuthobium sichuanense uncovers gene expression profiling associated with plant development
Cited by: 21
Author(s): Yonglin Wang, Xuewu Li, Weifen Zhou, Tao Li, Chengming Tian
Software Mentions: 1
Published: about 8 years ago
10.3389/fgene.2019.00237
Conserved MicroRNA Act Boldly During Sprout Development and Quality Formation in Pingyang Tezaocha (Camellia sinensis)
Cited by: 19
Author(s): Леи Жао, Changsong Chen, Yu Wang, Jiazhi Shen, Zhaotang Ding
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2020.581993
Integration of Transcriptional and Post-transcriptional Analysis Revealed the Early Response Mechanism of Sugarcane to Cold Stress
Cited by: 5
Author(s): Xing Huang, Yongsheng Liang, Baoqing Zhang, Xiu–Peng Song, Yang‐Rui Li, Zhengqiang Qin, Dewei Li, Rongfa Chen, Zhongfeng Zhou, Yuchi Deng, Wei Ji, Jianming Wu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-016-3253-6
Transcriptome analysis reveals dynamic changes in coxsackievirus A16 infected HEK 293T cells
Cited by: 23
Author(s): Jun Jin, Rujiao Li, Chunlai Jiang, Ruosi Zhang, Xiaomeng Ge, Liang Fang, Xin Sheng, Wenwen Dai, Meili Chen, Jiayan Wu, Jingfa Xiao, Weiheng Su
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12864-016-3017-3
Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity
Cited by: 34
Author(s): Renesh Bedre, Venkata Mangu, Subodh Srivastava, Luis E. Sanchez, Niranjan Baisakh
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2020.01337
MAT1-1-3, a Mating Type Gene in the Villosiclava virens, Is Required for Fruiting Bodies and Sclerotia Formation, Asexual Development and Pathogenicity
Cited by: 9
Author(s): Mingli Yong, Junjie Yu, Pan X, Mina Yu, Huijuan Cao, Zhongqiang Qi, Yan Du, Rongsheng Zhang, Tianqiao Song, Xiuli Yin, Zhiyi Chen, Wende Liu, Yongfeng Liu
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.02505
Transcriptome Landscape of Mycobacterium smegmatis
Cited by: 42
Author(s): Xinfeng Li, Mei Lan K. Han, Fang Chen, Qing Tang, Zhaoqing Yu, Xiaojian Cao, Binda T. Andongma, Shan‐Ho Chou, Jin He
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2164-14-377
Insight into the specific virulence related genes and toxin-antitoxin virulent pathogenicity islands in swine streptococcosis pathogen Streptococcus equi ssp. zooepidemicus strain ATCC35246
Cited by: 24
Author(s): Zhe Ma, Jianing Geng, Yang Li, Bin Xu, Ruoyu Jia, Yue Li, Qingshu Meng, Hongjie Fan, Songnian Hu
Software Mentions: 1
Published: over 11 years ago
10.3389/fmicb.2020.00025
Subinhibitory Concentrations of Fusidic Acid May Reduce the Virulence of S. aureus by Down-Regulating sarA and saeRS to Reduce Biofilm Formation and α-Toxin Expression
Cited by: 23
Author(s): Li Liu, Xiaofei Shen, Jingyi Yu, Xingwei Cao, Qing Zhan, Yinjuan Guo, Fangyou Yu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2019.00181
Transcriptome Sequencing Investigated the Tumor-Related Factors Changes After T. gondii Infection
Cited by: 10
Author(s): Gang Lü, Jian Zhou, Ying Zhao, Qiao ling Li, Yun yun Gao, Lin Wang
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmicb.2020.00196
Radezolid Is More Effective Than Linezolid Against Planktonic Cells and Inhibits Enterococcus faecalis Biofilm Formation
Cited by: 11
Author(s): Jinxin Zheng, Zhong Chen, Qisheng Wang, Xinghuai Sun, Bing Bai, Guangjian Xu, Junwen Chen, Ziming Yu, Di Qu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2020.594669
A Sec-Dependent Secretory Protein of the Huanglongbing-Associated Pathogen Suppresses Hypersensitive Cell Death in Nicotiana benthamiana
Cited by: 13
Author(s): Chao Zhang, Peixiu Du, Hailin Yan, Zongcai Zhu, Xuefeng Wang, Weimin Liu
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2018.01596
Compounds Released by the Biocontrol Yeast Hanseniaspora opuntiae Protect Plants Against Corynespora cassiicola and Botrytis cinerea
Cited by: 24
Author(s): Mariana Ferreira-Saab, Damien Formey, M Torres, Wendy Aragón, E. Acosta Padilla, Alexandre Tromas, Christian Sohlenkamp, Kátia Regina Freitas Schwan-Estrada, Mario Serrano
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2018.00096
Functional Analysis of the FZF1 Genes of Saccharomyces uvarum
Cited by: 11
Author(s): Xiaozhen Liu, Xiaoping Li, Zhiming Zhang, Ming Sang, Xiaodong Sun, Chengzhong He, Peiyao Xin, Hanyao Zhang
Software Mentions: 1
Published: almost 7 years ago
10.3389/fmicb.2019.01584
Comparative Transcriptional Analysis of Lactobacillus plantarum and Its ccpA-Knockout Mutant Under Galactooligosaccharides and Glucose Conditions
Cited by: 15
Author(s): Chen Chen, Linlin Wang, Yan-qing Lu, Haiyan Yu, Huanxiang Tian
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2021.681251
A Significantly High Abundance of “Candidatus Liberibacter asiaticus” in Citrus Fruit Pith: in planta Transcriptome and Anatomical Analyses
Cited by: 8
Author(s): Fang Fang, Hengyu Guo, Anmin Zhao, Tao Li, Hong-Ze Liao, Xiaoling Deng, Meirong Xu, Zheng Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2016.00724
Polyphosphate Kinase Mediates Antibiotic Tolerance in Extraintestinal Pathogenic Escherichia coli PCN033
Cited by: 10
Author(s): Jing Chen, Lijie Su, Xiangru Wang, Tao Zhang, Feng Liu, Huanchun Chen, Chen Tan
Software Mentions: 1
Published: over 8 years ago
10.3389/fmicb.2019.00807
Coexistence of Microbial Species in Structured Communities by Forming a Hawk-Dove Game Like Interactive Relationship
Cited by: 4
Author(s): Kelei Zhao, Jing Li, Ting Huang, Yang Yuan, Jiafu Lin, Bisong Yue, Wang Xin-rong, Yiwen Chu
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2019.01174
Small RNA Profiles of Serum Exosomes Derived From Individuals With Latent and Active Tuberculosis
Cited by: 52
Author(s): Lingna Lyu, Xiuli Zhang, Cuidan Li, Tingting Yang, Jinghui Wang, Liping Pan, Hongyan Jia, Zihui Li, Qi Sun, Liya Yue, Fei Chen, Zongde Zhang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-019-6094-2
MicroRNAs and their regulatory networks in Chinese Gushi chicken abdominal adipose tissue during postnatal late development
Cited by: 21
Author(s): Yi Chen, Yaping Zhao, Wenjiao Jin, Yuanfang Li, Yanhua Zhang, Xuejie Ma, Guirong Sun, Ruili Han, Yadong Tian, Hong Li, Xiangtao Kang, Guoxi Li
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2019.02306
Development of an Efficient Strategy to Improve Extracellular Polysaccharide Production of Ganoderma lucidum Using L-Phenylalanine as an Enhancer
Cited by: 16
Author(s): Zhen Ma, Mengmeng Xu, Qiong Wang, Feng Wang, Huihua Zheng, Zhenghua Gu, Youran Li, Guiyang Shi, Zhongyang Ding
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2020.00865
Staphylococcus aureus PhoU Homologs Regulate Persister Formation and Virulence
Cited by: 22
Author(s): Yongpeng Shang, Xiaofei Wang, Cheng Zhong, Zhihui Lyu, Qisheng Wang, Jinxin Zheng, Yang Wu, Qi Deng, Zhijian Yu, Ying Zhang, Di Qu
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.01720
Identification of Novel Long Non-coding and Circular RNAs in Human Papillomavirus-Mediated Cervical Cancer
Cited by: 39
Author(s): Hongbo Wang, Yingchao Zhao, Mingyue Chen, Jie Cui
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2020.574833
An ArcA-Modulated Small RNA in Pathogenic Escherichia coli K1
Cited by: 7
Author(s): Hao Sun, Yajun Song, Fang Chen, Chunxia Zhou, Peng Liu, Fan Yu, Yangyang Zheng, Xuehua Wan, Lu Feng
Software Mentions: 1
Published: about 4 years ago
10.7150/thno.48624
Tertiary lymphoid organs are associated with the progression of kidney damage and regulated by interleukin-17A
Cited by: 16
Author(s): Ran Luo, Yuansheng Cheng, Dan Chang, Tingting Liu, Liu Liu, Guangchang Pei, Nanhui Zhang, Zufeng Wang, Kanglin Guo, Wei Chen, Ming Li, Li Fan, Chunxiu Zhang, Yueqiang Li, Wei Dai, Mei-Ying Zuo, Yun Xu, Ying Yao, Shuwang Ge, Gang Xu
Software Mentions: 1
Published: almost 4 years ago
10.3390/toxins11090520
The Histone Deacetylases HosA and HdaA Affect the Phenotype and Transcriptomic and Metabolic Profiles of Aspergillus niger
Cited by: 17
Author(s): Xuejie Li, Longfa Pan, Bin Wang
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-11-619
Digital gene expression tag profiling of bat digits provides robust candidates contributing to wing formation
Cited by: 28
Author(s): Zhe Wang, Dong Dong, B. Le Rü, Rebecca L. Young, Ning Han, Tingting Guo, Shuyi Zhang
Software Mentions: 1
Published: about 14 years ago
10.7150/ijbs.38146
HIV-1-infected cell-derived exosomes promote the growth and progression of cervical cancer
Cited by: 24
Author(s): Haiyu Li, Xiangbo Chi, Rong Li, Jing Ouyang, Yaokai Chen
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12864-021-07439-y
Genome-wide miRNA analysis and integrated network for flavonoid biosynthesis in Osmanthus fragrans
Cited by: 11
Author(s): Yong Shi, Heng Xia, Xiaoting Cheng, Libin Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2020.565669
The Molecular Landscape and Biological Alterations Induced by PRAS40-Knockout in Head and Neck Squamous Cell Carcinoma
Cited by: 5
Author(s): Gang Chen, Zhexuan Li, Chang‐Han Chen, Jiajia Li, Weiming Zhu, Li She, Huimei Huang, Yuexiang Qin, Guancheng Liu, Juncheng Wang, Yong Liu, Donghai Huang, Qinglai Tang, Xin Zhang, Guanghao Zhu
Software Mentions: 1
Published: almost 4 years ago
10.7150/ijbs.35839
Exosomes Transmit Viral Genetic Information and Immune Signals may cause Immunosuppression and Immune Tolerance in ALV-J Infected HD11 cells
Cited by: 6
Author(s): Fei Ye, Yan Wang, Qijian He, Can Cui, Heling Yu, Yong Lu, Shiliang Zhu, Hengyong Xu, Xiaoling Zhao, Huadong Yin, Diyan Li, Hua Li, Qing Zhu
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2020.00438
PIWI-Interacting RNA-004800 Is Regulated by S1P Receptor Signaling Pathway to Keep Myeloma Cell Survival
Cited by: 17
Author(s): Huanxin Ma, Huihan Wang, Fei Tian, Yuan Zhong, Zhuogang Liu, Aijun Liao
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-020-06802-9
Genome-wide analysis of proline-rich extension-like receptor protein kinase (PERK) in Brassica rapa and its association with the pollen development
Cited by: 14
Author(s): Guohu Chen, Jian Wang, Hao Wang, Chenggang Wang, Xiaoyan Tang, Jie Li, Lei Zhang, Jinhui Song, Jinfeng Hou, Lingyun Yuan
Software Mentions: 1
Published: over 4 years ago
10.3389/fphar.2021.632201
Berberine Sensitizes Human Hepatoma Cells to Regorafenib via Modulating Expression of Circular RNAs
Cited by: 4
Author(s): Kunyuan Wang, Ganxiang Yu, Jiaen Lin, Zhilei Wang, Qianting Lu, Chengxin Gu, Tao Yang, Shiming Liu, Hui Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fphar.2021.671708
Danggui-Shaoyao-San Improves Gut Microbia Dysbiosis and Hepatic Lipid Homeostasis in Fructose-Fed Rats
Cited by: 12
Author(s): Jing Yin, Jiaxi Lu, Lei Peng, Mingshuai He, Shengjie Huang, Jialin Lv, Yan Zhu, Zhidong Liu, Miaomiao Jiang
Software Mentions: 1
Published: over 3 years ago
10.3389/fphar.2020.594038
Piperazine-Derived α1D/1A Antagonist 1- Benzyl-N- (3-(4- (2-Methoxyphenyl) Piperazine-1-yl) Propyl) -1H- Indole-2- Carboxamide Induces Apoptosis in Benign Prostatic Hyperplasia Independently of α1-Adrenoceptor Blocking
Cited by: 0
Author(s): Qing Xiao, Qi-Meng Liu, Ru‐Chao Jiang, Kai-Feng Chen, Xiang Yang Zhu, Lei Ma, Weixi Li, Fei He, Junjun Huang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphar.2021.722627
A Comprehensive Analysis of Metabolomics and Transcriptomics Reveals Novel Biomarkers and Mechanistic Insights on Lorlatinib Crosses the Blood-Brain Barrier
Cited by: 2
Author(s): Wei Chen, Chunyu Li, Yafei Shi, Yujun Zhang, Dujia Jin, Mingyu Zhang, Mingming Bo, Guohui Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2021.646721
Comparative Analysis of Adelphocoris suturalis Jakovlev (Hemiptera: Miridae) Immune Responses to Fungal and Bacterial Pathogens
Cited by: 3
Author(s): Meiqi Ma, Libin Guo, Chengjie Tu, Aoli Wang, Letian Xu, Jing Luo
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms22147615
Exogenous Brassinosteroid Facilitates Xylem Development in Pinus massoniana Seedlings
Cited by: 11
Author(s): Fuhua Fan, Zijing Zhou, Hongwu Qin, Jason Tan, Guijie Ding
Software Mentions: 1
Published: over 3 years ago
10.1186/s13046-021-01989-5
Targeting WD repeat domain 5 enhances chemosensitivity and inhibits proliferation and programmed death-ligand 1 expression in bladder cancer
Cited by: 38
Author(s): Jingtong Zhang, Qianghua Zhou, Keqin Xie, Cheng Liu, Shengmeng Peng, Ruihui Xie, Lixuan Liu, Yan Jie Zhang, Wen Dong, Jing Han, Ming Huang, Yuelong Chen, Tianxin Lin, Jian Huang, Zhanghua Chen
Software Mentions: 1
Published: over 3 years ago
10.1155/2017/9364594
Comparative RNA-Sequence Transcriptome Analysis of Phenolic Acid Metabolism in<i> Salvia miltiorrhiza</i>, a Traditional Chinese Medicine Model Plant
Cited by: 15
Author(s): Zhiwei Song, Linyan Guo, Tian Liu, Caicai Lin, Jianhua Wang, Xingfeng Li
Software Mentions: 1
Published: almost 8 years ago
10.1155/2016/6735209
De NovoAssembly and Comparative Transcriptome Analysis Provide Insight into Lysine Biosynthesis inToona sinensisRoem
Cited by: 6
Author(s): Xia Zhang, Zhenqiao Song, Lingmin Tian, Linyan Guo, Xingfeng Li
Software Mentions: 1
Published: almost 9 years ago
10.1155/2019/4393905
Integrated Metabolome and Transcriptome Analysis Uncovers the Role of Anthocyanin Metabolism in <i>Michelia maudiae</i>
Cited by: 19
Author(s): Xiaoan Lang, Na Li, Lingfei Li, Shouzhou Zhang
Software Mentions: 1
Published: about 5 years ago
10.1186/1471-2164-12-538
RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus
Cited by: 69
Author(s): Emilie Villar, Christophe Klopp, Céline Noirot, Evandro Novaes, Mathias Kirst, Christophe Plomion, Jean‐Marc Gion
Software Mentions: 1
Published: about 13 years ago
10.3389/fpls.2020.551288
Metabolite and Transcriptome Profiling on Xanthine Alkaloids-Fed Tea Plant (Camellia sinensis) Shoot Tips and Roots Reveal the Complex Metabolic Network for Caffeine Biosynthesis and Degradation
Cited by: 12
Author(s): Cheng Deng, Xiuping Ku, Lin-Lin Cheng, Si-an Pan, Limao Fan, Wei‐Wei Deng, Jian Zhao, Zhengzhu Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12864-021-07759-z
Two homologous Salmonella serogroup C1-specific genes are required for flagellar motility and cell invasion
Cited by: 2
Author(s): Xiujuan Zhou, Bin Liu, Yanhong Liu, Chunlei Shi, Pina M. Fratamico, Lida Zhang, Dapeng Wang, Jianhua Zhang, Yan Cui, Ping Xu, Xianming Shi
Software Mentions: 1
Published: over 3 years ago
10.1186/s13045-019-0839-x
M6A-mediated upregulation of LINC00958 increases lipogenesis and acts as a nanotherapeutic target in hepatocellular carcinoma
Cited by: 247
Author(s): Xueliang Zuo, Zhiqiang Chen, Wen Gao, Yao Zhang, Jinguo Wang, Junfeng Wang, Ming Cao, Juan Cai, Junli Wu, Xuehao Wang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2020.559438
SmMYC2b Enhances Tanshinone Accumulation in Salvia miltiorrhiza by Activating Pathway Genes and Promoting Lateral Root Development
Cited by: 6
Author(s): Yangyun Zhou, Jingxian Feng, Qing Li, Doudou Huang, Xiao Chen, Zenan Du, Zongyou Lv, Ying Xiao, Yonglong Han, Junfeng Chen, Wansheng Chen
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2016.01442
Genome-Wide Identification, Phylogeny, and Expression Analyses of the 14-3-3 Family Reveal Their Involvement in the Development, Ripening, and Abiotic Stress Response in Banana
Cited by: 17
Author(s): Meiying Li, Lixia Ren, Biao Xu, Xiaoliang Yang, Qiyu Xia, Pingping He, Xiao SuSheng, Anping Guo, Wei Hu, Zhiqiang Jin
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2015.00819
Transcriptome analysis of Ginkgo biloba kernels
Cited by: 29
Author(s): Bing He, Ying Gu, Meng Xu, Jianwen Wang, Fuliang Cao, Liang Xu
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2014.00698
Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seeds
Cited by: 47
Author(s): Seema Pradhan, Nitesh Bandhiwal, Neelima Shah, Chandra Kant, Rashmi Gaur, Sabhyata Bhatia
Software Mentions: 1
Published: almost 10 years ago
10.3389/fpls.2015.00914
Genome-wide gene phylogeny of CIPK family in cassava and expression analysis of partial drought-induced genes
Cited by: 51
Author(s): Wei Hu, Zhiqiang Xia, Yan Yan, Zehong Ding, Weiwei Tie, Lianzhe Wang, Meiling Zou, Yunxie Wei, Cheng Lü, Xin Hou, Wenquan Wang, Ming Peng
Software Mentions: 1
Published: about 9 years ago
10.1186/s13018-021-02350-4
Deer antler extract potentially facilitates xiphoid cartilage growth and regeneration and prevents inflammatory susceptibility by regulating multiple functional genes
Cited by: 4
Author(s): Mengqi Guan, Daian Pan, Mei Zhang, Xiangyang Leng, Baojin Yao
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2020.519752
Transcriptome Analysis of Different Tissues Reveals Key Genes Associated With Galanthamine Biosynthesis in Lycoris longituba
Cited by: 11
Author(s): Qingzhu Li, Junxu Xu, Liuyan Yang, Xiaohui Zhou, Youming Cai, Yongchun Zhang
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2016.01508
Genome-Wide Gene Expressions Respond Differently to A-subgenome Origins in Brassica napus Synthetic Hybrids and Natural Allotetraploid
Cited by: 19
Author(s): Dawei Zhang, Qi Pan, Chen Tan, Bin Zhu, Xianhong Ge, Yiming Shao, Zaiyun Li
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2021.663519
Hydrogen Sulfide Alleviates Alkaline Salt Stress by Regulating the Expression of MicroRNAs in Malus hupehensis Rehd. Roots
Cited by: 6
Author(s): Huan Li, Tingting Yu, Yuansheng Ning, Hao Li, Weiwei Zhang, Hongqiang Yang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-020-06876-5
Adaptation of pine wood nematode Bursaphelenchus xylophilus to β-pinene stress
Cited by: 7
Author(s): Yongxia Li, Yuqian Feng, Xuan Wang, Jing Cui, Xun Deng, Xingyao Zhang
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-15-321
The influences of PRG-1 on the expression of small RNAs and mRNAs
Cited by: 4
Author(s): Jiajia Wang, Cui Dong-ya, Tengfei Xiao, Xinwei Sun, Peng Zhang, Runsheng Chen, Shunmin He, Dawei Huang
Software Mentions: 1
Published: over 10 years ago
10.3389/fpls.2016.01294
Genome-Wide Identification and Expression Analysis of the Mitogen-Activated Protein Kinase Gene Family in Cassava
Cited by: 19
Author(s): Yan Yan, Lianzhe Wang, Zehong Ding, Weiwei Tie, Xuezhi Ding, Chen Zeng, Yunxie Wei, Hongfeng Zhao, Ming Peng, Wei Hu
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.7115
Integrative radiogenomic analysis for multicentric radiophenotype in glioblastoma
Cited by: 15
Author(s): Doo‐Sik Kong, Jin‐Kuk Kim, In-Hee Lee, Sung Tae Kim, Ho Jun Seol, Jung-Il Lee, Woong-Yang Park, Gyu Ha Ryu, Zichen Wang, Avi Ma’ayan, Do‐Hyun Nam
Software Mentions: 1
Published: almost 9 years ago
10.3389/fpls.2019.01638
Transcriptome and Phytochemical Analyses Provide New Insights Into Long Non-Coding RNAs Modulating Characteristic Secondary Metabolites of Oolong Tea (Camellia sinensis) in Solar-Withering
Cited by: 39
Author(s): Chen Zhu, Shuting Zhang, Haifeng Fu, Chengzhe Zhou, Lan Chen, Xiaozhen Li, Yuling Lin, Lai Zhang, Yuqiong Guo
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2021.643213
Profiling of MicroRNAs Involved in Mepiquat Chloride-Mediated Inhibition of Internode Elongation in Cotton (Gossypium hirsutum L.) Seedlings
Cited by: 2
Author(s): Li Wang, Ying Yin, Xiuxiu Jing, Menglei Wang, Miao Zhao, Juanjuan Yu, Zongbo Qiu, Yongfang Li
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-021-07403-w
Transcriptome sequencing and metabolome analysis of food habits domestication from live prey fish to artificial diets in mandarin fish (Siniperca chuatsi)
Cited by: 16
Author(s): Shan He, Jun-Jie You, Xu‐Fang Liang, Zhi-Lu Zhang, Yanpeng Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-020-6492-5
Integrated mRNA and miRNA transcriptome analysis reveals a regulatory network for tuber expansion in Chinese yam (Dioscorea opposita)
Cited by: 19
Author(s): Yunyi Zhou, Jie Zhan, Saba Hameed, Dong Xiao, Jiasui Zhan, Aiqing Wang, Long-Fei He
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.32497
A population of innate myelolymphoblastoid effector cell expanded by inactivation of mTOR complex 1 in mice
Cited by: 4
Author(s): Fei Tang, Peng Zhang, Peiying Ye, Christopher A. Lazarski, Qi Wu, Ingrid L. Bergin, Timothy P. Bender, Michael N. Hall, Ya Cui, Liguo Zhang, Taijiao Jiang, Yang Liu, Pan Zheng
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2016.01475
Comparative Profiling of miRNAs and Target Gene Identification in Distant-Grafting between Tomato and Lycium (Goji Berry)
Cited by: 27
Author(s): A. B. M. Khaldun, Wenjun Huang, Haiyan Lv, Sheng-Kai Liao, Shaohua Zeng, Ying Wāng
Software Mentions: 1
Published: about 8 years ago
10.1186/s12863-016-0389-y
Integrative analysis of transcriptomics and proteomics of skeletal muscles of the Chinese indigenous Shaziling pig compared with the Yorkshire breed
Cited by: 47
Author(s): Huanming Yang, Xing-Li Xu, Haiming Ma, Jun Jiang
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2016.00736
Comparative Physiological and Transcriptomic Analyses Reveal the Actions of Melatonin in the Delay of Postharvest Physiological Deterioration of Cassava
Cited by: 57
Author(s): Wei Hu, Ke Hua, Yanping Guo, Yuliang Zhang, Zehong Ding, Weiwei Tie, Yan Yan, Qixing Huang, Ming Peng, Haitao Shi, Anping Guo
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2016.01921
Transcriptomic Profiling Reveals Metabolic and Regulatory Pathways in the Desiccation Tolerance of Mungbean (Vigna radiata [L.] R. Wilczek)
Cited by: 21
Author(s): Xiangrong Tian, Sidi Li, Yisong Liu, Xuanming Liu
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2020.00081
Open-Bud Duplicate Loci Are Identified as MML10s, Orthologs of MIXTA-Like Genes on Homologous Chromosomes of Allotetraploid Cotton
Cited by: 2
Author(s): Wei Chen, Jinbo Yao, Yan Li, Shouhong Zhu, Yan Guo, Shengtao Fang, Lingxia Zhao, Junyi Wang, Yuan Li, Youjun Lü, Yongshan Zhang
Software Mentions: 1
Published: almost 5 years ago
10.18632/oncotarget.12963
Systematic approach identifies RHOA as a potential biomarker therapeutic target for Asian gastric cancer
Cited by: 15
Author(s): Hae Ryung Chang, Seungyoon Nam, Jinhyuk Lee, Jin Hee Kim, Hae Rim Jung, Hee Seo Park, Sung Jin Park, Young Zoo Ahn, Iksoo Huh, Curt Balch, Ja Lok Ku, Garth Powis, Taesung Park, Junhui Jeong, Yon Hui Kim
Software Mentions: 1
Published: about 8 years ago
10.1186/s12863-015-0276-y
MicroRNA profiles reveal female allotetraploid hybrid fertility
Cited by: 8
Author(s): Rong Zhou, Yanhong Wu, Min Tao, Chun Zhang, Shaojun Liu
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2016.01298
Transcriptome Analysis of Cadmium-Treated Roots in Maize (Zea mays L.)
Cited by: 50
Author(s): Runqing Yue, Caixia Lü, Qi Jing, Xiaohua Han, Shufeng Yan, Shulei Guo, Lu Liu, Fu Xiaolei, Nana Chen, Hao Yin, Haifeng Chi, Shuanggui Tie
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2015.00610
De novo assembly of the Japanese lawngrass (Zoysia japonica Steud.) root transcriptome and identification of candidate unigenes related to early responses under salt stress
Cited by: 20
Author(s): Qi Xie, Jun Niu, Xilin Xu, Lu Xu, Yinbing Zhang, Bo Fan, Xiaofang Liang, Lijuan Zhang, Shaowu Yin, Liebao Han
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2017.01291
Flower Development and Sex Determination between Male and Female Flowers in Vernicia fordii
Cited by: 25
Author(s): Yingji Mao, Wenbo Liu, Xue Chen, Ying Xu, Wenjian Lu, Jinyan Hou, Jun Ni, Yuting Wang, Lifang Wu
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms160716242
Deep Sequencing Analysis of miRNA Expression in Breast Muscle of Fast-Growing and Slow-Growing Broilers
Cited by: 40
Author(s): Hongjia Ouyang, Xiaomei He, Guihuan Li, Haiping Xu, Xiaoyun Jia, Qinghua Nie, Xiquan Zhang
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2015.00778
Identification and characterization of miRNAs in ripening fruit of Lycium barbarum L. using high-throughput sequencing
Cited by: 24
Author(s): Shaohua Zeng, Yongliang Liu, Lizhu Pan, Alice Hayward, Ying Wang
Software Mentions: 1
Published: about 9 years ago
10.1534/g3.111.001107
Strain Variation in the Transcriptome of the Dengue Fever Vector,<i>Aedes aegypti</i>
Cited by: 34
Author(s): Mariangela Bonizzoni, William A. Dunn, Corey L. Campbell, Ken E. Olson, Osvaldo Marinotti, Anthony A. James
Software Mentions: 1
Published: almost 13 years ago
10.1534/g3.116.027110
Embryonal Control of Yellow Seed Coat Locus <i>ECY1</i> Is Related to Alanine and Phenylalanine Metabolism in the Seed Embryo of <i>Brassica napus</i>
Cited by: 13
Author(s): Fulin Wang, Jiewang He, Jianxin Shi, Tao Zheng, Fei Xu, WU Guan-ting, Renhu Liu, Liu S
Software Mentions: 1
Published: over 8 years ago
10.3390/genes8070173
Bacillus amyloliquefaciens SAY09 Increases Cadmium Resistance in Plants by Activation of Auxin-Mediated Signaling Pathways
Cited by: 49
Author(s): Cheng Zhou, Lin Zhu, Zhongyou Ma, Jianfei Wang
Software Mentions: 1
Published: over 7 years ago
10.3390/genes8080191
Genome-Wide Analysis Reveals Extensive Changes in LncRNAs during Skeletal Muscle Development in Hu Sheep
Cited by: 33
Author(s): Caifang Ren, Mingtian Deng, Yixuan Fan, Hua Yang, Guomin Zhang, Feng Xu, Fengzhe Li, Dan Wang, Yanli Zhang
Software Mentions: 1
Published: over 7 years ago
10.3390/genes8100255
De Novo Assembly and Analysis of Tartary Buckwheat (Fagopyrum tataricum Garetn.) Transcriptome Discloses Key Regulators Involved in Salt-Stress Response
Cited by: 42
Author(s): Qi Wu, Xue Bai, Wei Zhao, Dabing Xiang, Yan Wan, Jun Yan, Liang Zou, Gang Zhao
Software Mentions: 1
Published: about 7 years ago
10.3390/genes10020090
Comprehensive Expression Profiling Analysis of Pituitary Indicates that circRNA Participates in the Regulation of Sheep Estrus
Cited by: 19
Author(s): Xiaoyue Li, Cunyuan Li, Junchang Wei, Wei Ni, Yuwen Xu, Rui Yao, Mengdan Zhang, Huixiang Li, Li Liu, Hanli Dang, Wureli Hazi, Shengwei Hu
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12864-016-2955-0
Transcriptome comparison reveals key candidate genes in response to vernalization of Oriental lily
Cited by: 18
Author(s): Wenqi Li, Xiaohua Liu, Yingzhi Lu
Software Mentions: 1
Published: over 8 years ago
10.3390/genes10060430
Genome-Wide Analysis of the miRNA–mRNAs Network Involved in Cold Tolerance in Populus simonii × P. nigra
Cited by: 16
Author(s): Bo Zhou, Yutong Kang, Jingtong Leng, Qinying Xu
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms161126005
Morphological Characters and Transcriptome Profiles Associated with Black Skin and Red Skin in Crimson Snapper (Lutjanus erythropterus)
Cited by: 15
Author(s): Yanping Zhang, Zhongduo Wang, Yusong Guo, Li Liu, Jianhua Yu, Shun Zhang, Shaojun Liu, Liu Chu-wu
Software Mentions: 1
Published: about 9 years ago
10.3390/ijms17020259
Transcriptome-Based Identification of Differently Expressed Genes from Xanthomonas oryzae pv. oryzae Strains Exhibiting Different Virulence in Rice Varieties
Cited by: 6
Author(s): Tae-Hwan Noh, Eun-Sung Song, Hong-Il Kim, Mi-Hyung Kang, Youngjin Park
Software Mentions: 1
Published: almost 9 years ago
10.3390/genes10110842
Integration of Quantitative Trait Loci Mapping and Expression Profiling Analysis to Identify Genes Potentially Involved in Ramie Fiber Lignin Biosynthesis
Cited by: 4
Author(s): Jianrong Chen, Jing Rao, Yanzhou Wang, Zheng Zeng, Fang Liu, Yuxuan Tang, Xiaorong Chen, Chan Lee, Touming Liu
Software Mentions: 1
Published: about 5 years ago
10.3390/genes10120947
Integrative Analysis of the lncRNA and mRNA Transcriptome Revealed Genes and Pathways Potentially Involved in the Anther Abortion of Cotton (Gossypium hirsutum L.)
Cited by: 12
Author(s): Yuqing Li, Tengfei Qin, Na Dong, Chunyan Wei, Yaxin Zhang, Rui Sun, Tingting Dong, Quanjia Chen, Ran Zhou, Qinglian Wang
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms17030353
Transcriptome and Gene Ontology (GO) Enrichment Analysis Reveals Genes Involved in Biotin Metabolism That Affect l-Lysine Production in Corynebacterium glutamicum
Cited by: 15
Author(s): Hong-Il Kim, Jong-Hyeon Kim, Youngjin Park
Software Mentions: 1
Published: over 8 years ago