Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DEGseq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DEGseq

Identify Differentially Expressed Genes from RNA-seq data
1 version
Latest release: about 1 year ago
96,712 downloads total

Papers Mentioning DEGseq 697

10.1038/s41598-017-12387-3
Transcriptome analyses suggest a novel hypothesis for whitefly adaptation to tobacco
Cited by: 8
Author(s): Wei Xia, Xin Ru Wang, Yan Liang, Shu‐Sheng Liu
Software Mentions: 2
Published: about 7 years ago
10.1038/s41598-017-16344-y
Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
Cited by: 31
Author(s): Cunyuan Li, Xiaoyue Li, Qiman Ma, Xiangyu Zhang, Yang Cao, Yang Yao, Shuang You, Dawei Wang, Renzhe Quan, Xiaoxu Hou, Zhijin Liu, Qianqian Zhan, Li Liu, Mengdan Zhang, Shuting Yu, Wei Ni, Shengwei Hu
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-27440-y
Comprehensive metabolic and transcriptomic profiling of various tissues provide insights for saponin biosynthesis in the medicinally important Asparagus racemosus
Cited by: 15
Author(s): Prabhakar Lal Srivastava, Anurag Shukla, Raviraj M. Kalunke
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-019-43269-5
Identification and functional prediction of cold-related long non-coding RNA (lncRNA) in grapevine
Cited by: 40
Author(s): Pengfei Wang, Lingmin Dai, Jun Ai, Yongmei Wang, Fengshan Ren
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-019-51041-y
Maternal energy insufficiency affects testicular development of the offspring in a swine model
Cited by: 3
Author(s): Yan Lin, Xue-Yu Xu, De Wu, Hao Lin, Zhengfeng Fang, Bin Feng, Shengyu Xu, Lianqiang Che, Jian Li, Yong Zhuo, Cai-Mei Wu, Junjie Zhang, Hongjun Dong
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-020-68931-1
Transcriptome analysis of feather follicles reveals candidate genes and pathways associated with pheomelanin pigmentation in chickens
Cited by: 17
Author(s): Xinyue Zheng, Bo Zhang, Yawen Zhang, Haian Zhong, Ruixue Nie, Junying Li, Hao Zhang, Changxin Wu
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-69943-7
Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition
Cited by: 6
Author(s): Hao Liu, Xuanqiang Liang, Qing Lu, Haifen Li, Haiyan Liu, Shaoxiong Li, Rajeev K. Varshney, Yanbin Hong, Xiaoping Chen
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-021-81784-6
Analyses of transcriptomes and the first complete genome of Leucocalocybe mongolica provide new insights into phylogenetic relationships and conservation
Cited by: 7
Author(s): Mingzheng Duan, Hongda Bao, Tolgor Bau
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-95832-8
Identification and characterization of early Fusarium wilt responsive mRNAs and long non-coding RNAs in banana root using high-throughput sequencing
Cited by: 1
Author(s): Chunzhen Cheng, Li Fan, Na Tian, Raphael Anue Mensah, Xiao Sun, Jiapeng Liu, Junwei Wu, Bin Wang, Dan Li, Lai Zhang
Software Mentions: 2
Published: over 3 years ago
10.1186/s13046-021-01933-7
SLC6A8-mediated intracellular creatine accumulation enhances hypoxic breast cancer cell survival via ameliorating oxidative stress
Cited by: 9
Author(s): Qiao Li, Manran Liu, Yan Sun, Tengchuan Jin, Peng Zhu, Xueying Wan, Yixuan Hou, Gang Tu
Software Mentions: 2
Published: over 3 years ago
10.1155/2021/5524231
lncRNA DCST1-AS1 Facilitates Oral Squamous Cell Carcinoma by Promoting M2 Macrophage Polarization through Activating NF-κB Signaling
Cited by: 16
Author(s): Yilong Ai, Shiwei Liu, Hailing Luo, Si-Pei Wu, Haigang Wei, Zhe Tang, Xia Li, Chen Zou
Software Mentions: 2
Published: over 3 years ago
10.7554/eLife.02637
Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes
Cited by: 45
Author(s): Roberto Bonasio, Emilio Lecona, Varun Narendra, Philipp Voigt, Fulvio Parisi, Yuval Kluger, Danny Reinberg
Software Mentions: 2
Published: over 10 years ago
10.3390/ijms16012220
De Novo Assembly and Characterization of Narrow-Ridged Finless Porpoise Renal Transcriptome and Identification of Candidate Genes Involved in Osmoregulation
Cited by: 12
Author(s): Rui Ruan, Aihuan Guo, Yongsheng Hao, Jingwu Zheng, Ding Wang
Software Mentions: 2
Published: almost 10 years ago
10.3390/ijms17091402
Sexually Dimorphic Gene Expression Associated with Growth and Reproduction of Tongue Sole (Cynoglossus semilaevis) Revealed by Brain Transcriptome Analysis
Cited by: 15
Author(s): Ping-ping Wang, Min Zheng, Jian Liu, Yongzhuang Liu, Jianguo Lü, Xin Sun
Software Mentions: 2
Published: about 8 years ago
10.3390/ijms19061760
RNA-Seq Analysis Reveals a Positive Role of HTR2A in Adipogenesis in Yan Yellow Cattle
Cited by: 18
Author(s): Jinyan Yun, Haixia Jin, Yang Cao, Lichun Zhang, Yumin Zhao, Xin Jin, Yong Yu
Software Mentions: 2
Published: over 6 years ago
10.3390/ijms20205120
Using Transcriptome Analysis to Screen for Key Genes and Pathways Related to Cytoplasmic Male Sterility in Cotton (Gossypium hirsutum L.)
Cited by: 14
Author(s): Yuqing Li, Tengfei Qin, Chunyan Wei, Jialiang Sun, Tingting Dong, Ran Zhou, Quanjia Chen, Qinglian Wang
Software Mentions: 2
Published: about 5 years ago
10.3390/ijms21062117
Changes in DNA Methylation in Response to 6-Benzylaminopurine Affect Allele-Specific Gene Expression in Populus Tomentosa
Cited by: 3
Author(s): Anran Xuan, Yuepeng Song, Chenhao Bu, Panfei Chen, Yousry A. El‐Kassaby, Deqiang Zhang
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms21093324
Small RNA and Transcriptome Sequencing Reveals miRNA Regulation of Floral Thermogenesis in Nelumbo nucifera
Cited by: 7
Author(s): Yu Zeng, Guanglong Chen, Jing Jin, Ying Wang, Min Xu, Jing Peng, Yi Ding
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms21124305
Characterization and Analysis of the Full-Length Transcriptomes of Multiple Organs in Pseudotaxus chienii (W.C.Cheng) W.C.Cheng
Cited by: 4
Author(s): Li Liu, Zhen Wang, Yingjuan Su, Ting Wang
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms22031107
Reactive Oxygen Species Accumulation Strongly Allied with Genetic Male Sterility Convertible to Cytoplasmic Male Sterility in Kenaf
Cited by: 6
Author(s): Liu Yiding, Bujin Zhou, Aziz Khan, Jie Zheng, Farman Ullah Dawar, Kashif Akhtar, Ran Zhou
Software Mentions: 2
Published: almost 4 years ago
10.3390/ijms22157905
Transcriptomic Analysis of the Photosynthetic, Respiration, and Aerenchyma Adaptation Strategies in Bermudagrass (Cynodon dactylon) under Different Submergence Stress
Cited by: 15
Author(s): Zuoqiang Yuan, Xilu Ni, Muhammad Arif, Dong Zhi, Limiao Zhang, Xue Tan, Jiajia Li, Changxiao Li
Software Mentions: 2
Published: over 3 years ago
10.18632/oncotarget.13616
Genomic and transcriptomic characterization of skull base chordoma
Cited by: 14
Author(s): K. Jason, In Hee Lee, Sang Duk Hong, Doo Sik Kong, Do Hyun Nam
Software Mentions: 2
Published: almost 8 years ago
10.18632/oncotarget.12828
Which statistical significance test best detects oncomiRNAs in cancer tissues? An exploratory analysis
Cited by: 34
Author(s): Wei Tang, Zhijun Liao, Quan Zou
Software Mentions: 2
Published: about 8 years ago
10.18632/oncotarget.20627
The downregulation of putative anticancer target BORIS/CTCFL in an addicted myeloid cancer cell line modulates the expression of multiple protein coding and ncRNA genes
Cited by: 2
Author(s): Evgeny Teplyakov, Qiongfang Wu, Jian Liu, Elena M. Pugacheva, Dmitry Loukinov, Abdelhalim Boukaba, Victor Lobanenkov, Alexander Strunnikov
Software Mentions: 2
Published: about 7 years ago
10.18632/oncotarget.20439
LncRNA as ceRNAs may be involved in lactation process
Cited by: 22
Author(s): Shuai Yu, Yong Zhao, Fang-Nong Lai, Meiqiang Chu, Yanan Hao, Yanni Feng, Hongfu Zhang, Jing Liu, Ming Cheng, Lan Li, Wei Shen, Min Liu
Software Mentions: 2
Published: about 7 years ago
10.3390/nu11061347
Chrysanthemum Leaf Ethanol Extract Prevents Obesity and Metabolic Disease in Diet-Induced Obese Mice via Lipid Mobilization in White Adipose Tissue
Cited by: 11
Author(s): Ri Ryu, Eun‐Young Kwon, Jiyoung Choi, Jong Cheol Shon, Kwang-Hyeon Liu, Myung‐Sook Choi
Software Mentions: 2
Published: over 5 years ago
10.1186/s12870-018-1483-2
High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans)
Cited by: 25
Author(s): Weihua Liu, Chunzhen Cheng, Fanglan Chen, Ni Sui, Yuling Lin, Lai Zhang
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0143260
A Comprehensive MicroRNA Expression Profile Related to Hypoxia Adaptation in the Tibetan Pig
Cited by: 23
Author(s): Bo Zhang, Yangzong Qiangba, Peng Shang, Zhixiu Wang, Jun Ma, Liyuan Wang
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0159462
Proteomic and Transcriptomic Analyses of Swine Pathogen Erysipelothrix rhusiopathiae Reveal Virulence Repertoire
Cited by: 7
Author(s): Yufeng Li, Zhen Yao, Yuting Xia, Juan Bai, Xianwei Wang, Ping Jiang
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-018-33239-8
CHI3L1 promotes tumor progression by activating TGF-β signaling pathway in hepatocellular carcinoma
Cited by: 44
Author(s): Qingchong Qiu, Lin Wang, Shanshan Jin, Guanfeng Liu, Jie Liu, Liang Ma, Rong Mao, Yingying Ma, Na Zhao, Ming Chen, Biaoyang Lin
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0082155
Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation
Cited by: 109
Author(s): Jianjian Lv, Ping Liu, Yu Wang, Bingbo Gao, Ping Chen, Jian Li
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12870-014-0395-z
Genome-wide transcriptomic and phylogenetic analyses reveal distinct aluminum-tolerance mechanisms in the aluminum-accumulating species buckwheat (Fagopyrum tataricum)
Cited by: 45
Author(s): Haifeng Zhu, Hua Wang, Yifang Zhu, Jianwen Zou, Fang‐Jie Zhao, Chao‐Feng Huang
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-020-6533-0
Identification of transcriptome and fluralaner responsive genes in the common cutworm Spodoptera litura Fabricius, based on RNA-seq
Cited by: 17
Author(s): Zhong‐Qiang Jia, Di Liu, Yajun Peng, Zhaojun Han, Chunqing Zhao, Tao Tang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12870-018-1459-2
Identification and characterization of NF-Y gene family in walnut (Juglans regia L.)
Cited by: 14
Author(s): Shaowen Quan, Jianxin Niu, Li Zhou, Hang Xu, Lan Ma, Qin Yang
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2229-13-223
SGR: an online genomic resource for the woodland strawberry
Cited by: 40
Author(s): Omar Darwish, Janet P. Slovin, Chunying Kang, Courtney A. Hollender, Aviva Geretz, Sam Houston, Zhongchi Liu, Nadim W. Alkharouf
Software Mentions: 1
Published: almost 11 years ago
10.18632/oncotarget.20570
Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in <i>Branchiostoma belcheri</i> by deep sequencing and bioinformatics
Cited by: 10
Author(s): Qi-Lin Zhang, Qianhua Zhu, Feng Zhang, Bin Xu, Xiuqiang Wang, Jun-Yuan Chen
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0063741
Transcriptome Sequencing and De Novo Analysis of the Copepod Calanus sinicus Using 454 GS FLX
Cited by: 44
Author(s): Juan Ning, Minxiao Wang, Chaolun Li, Song Sun
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0129399
The miRNA Profile of Platelets Stored in a Blood Bank and Its Relation to Cellular Damage from Storage
Cited by: 30
Author(s): Thaís Brilhante Pontes, Caroline Aquino Moreira-Nunes, Jersey Heitor da Silva Maués, Letícia Martins Lamarão, José Alexandre Rodrigues de Lemos, Raquel Carvalho Montenegro, Rommel Rodrı́guez Burbano
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0125031
Integrated RNA-Seq and sRNA-Seq Analysis Identifies Chilling and Freezing Responsive Key Molecular Players and Pathways in Tea Plant (Camellia sinensis)
Cited by: 71
Author(s): Chao Zheng, Леи Жао, Yu Wang, Jiazhi Shen, Yinfei Zhang, Sisi Jia, Yusheng Li, Zhaotang Ding
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0046244
Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas
Cited by: 138
Author(s): Xuelin Zhao, Hong Yu, Lingfeng Kong, Qi Li
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0226776
Ionomic and transcriptomic analyses of two cotton cultivars (Gossypium hirsutum L.) provide insights into the ion balance mechanism of cotton under salt stress
Cited by: 19
Author(s): Huijuan Guo, Shuangnan Li, Min Wei, Jun Ye, Zhenan Hou
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0085505
Transciptome Analysis of the Gill and Swimbladder of Takifugu rubripes by RNA-Seq
Cited by: 25
Author(s): Jun Cui, Shikai Liu, Bing Zhang, Hongdi Wang, Hongjuan Sun, Shuhui Song, Xuemei Qiu, Yang Liu, Xiuli Wang, Zhiqiang Jiang, Zhanjiang Liu
Software Mentions: 1
Published: almost 11 years ago
10.1038/s41598-019-43582-z
Stages identifying and transcriptome profiling of the floral transition in Juglans regia
Cited by: 15
Author(s): Shaowen Quan, Jianxin Niu, Li Zhou, Hang Xu, Lan Ma, Qin Yang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12866-016-0642-6
Genome-wide transcriptome profiling of nitrogen fixation in Paenibacillus sp. WLY78
Cited by: 23
Author(s): Haowen Shi, Liying Wang, Xinxin Li, Xiaomeng Liu, Tianyi Hao, Xiaojuan He, Sanfeng Chen
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0151067
The Tomato Hoffman’s Anthocyaninless Gene Encodes a bHLH Transcription Factor Involved in Anthocyanin Biosynthesis That Is Developmentally Regulated and Induced by Low Temperatures
Cited by: 88
Author(s): Zhengkun Qiu, Xiaoxuan Wang, Jianchang Gao, Yanmei Guo, Zejun Huang, Yan Du
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms21217864
Mapping a Circular RNA–microRNA–mRNA-Signaling Regulatory Axis that Modulates Stemness Properties of Cancer Stem Cell Populations in Colorectal Cancer Spheroid Cells
Cited by: 22
Author(s): Vimalan Rengganaten, Chiu Jung Huang, Ping-Hsing Tsai, Mong‐Lien Wang, Yi Yang, Yuan Tzu Lan, Wen Liang Fang, Shelly Soo, Hooi Tin Ong, Soon Keng Cheong, Kong‐Bung Choo, Shih Hwa Chiou
Software Mentions: 1
Published: about 4 years ago
10.1186/s12866-021-02113-5
The small molecule ZY-214-4 may reduce the virulence of Staphylococcus aureus by inhibiting pigment production
Cited by: 0
Author(s): Jingyi Yu, Lulin Rao, Lingling Zhan, Bingjie Wang, Qing Zhan, Yanling Xu, Huabin Zhao, Xinyi Wang, Yan Zhou, Yinjuan Guo, Xiaodong Wu, Zengqiang Song, Fangyou Yu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-019-56246-9
Sarcodia suieae acetyl-xylogalactan regulate RAW 264.7 macrophage NF-kappa B activation and IL-1 beta cytokine production in macrophage polarization
Cited by: 19
Author(s): Tzong‐Ming Wu, Fan-Hua Nan, Kuan-Chu Chen, Yu‐Sheng Wu
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12866-017-1013-7
Transposon insertion sequencing reveals T4SS as the major genetic trait for conjugation transfer of multi-drug resistance pEIB202 from Edwardsiella
Cited by: 19
Author(s): Yang Liu, Yanan Gao, Xiaohong Liu, Qin Liu, Yuanxing Zhang, Qiyao Wang, Jingfan Xiao
Software Mentions: 1
Published: over 7 years ago
10.1186/s12866-014-0319-y
Global transcriptome analysis of Mesorhizobium alhagi CCNWXJ12-2 under salt stress
Cited by: 24
Author(s): Xiaodong Liu, Yane Luo, Osama Abdalla Mohamed, Dongying Li, Gehong Wei
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-019-6152-9
Transcriptomic analysis of Verbena bonariensis roots in response to cadmium stress
Cited by: 15
Author(s): Meng-qi Wang, Zhenyu Bai, Ya-fang Xiao, Yan Li, Qinglin Liu, Lei Zhang, Yuanzhi Pan, Beibei Jiang, Zhengqiu Fan
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-64579-z
Predicting worse survival for newly diagnosed T cell lymphoma based on the decreased baseline CD16−/CD16 + monocyte ratio
Cited by: 5
Author(s): Wei Zhang, Jing Ruan, Daobin Zhou, Xiao Han, Yan Zhang, Wei Wang, Mingqi Ouyang
Software Mentions: 1
Published: over 4 years ago
10.1186/s12964-021-00783-2
EGF stimulates human trophoblast cell invasion by downregulating ID3-mediated KISS1 expression
Cited by: 11
Author(s): Lanlan Fang, Yibo Gao, Zhen Wang, Yuxi Li, Yang Yan, Ze Wu, Jung‐Chien Cheng, Yingpu Sun
Software Mentions: 1
Published: about 3 years ago
10.1038/s41419-018-0813-5
Deep RNA sequencing reveals the dynamic regulation of miRNA, lncRNAs, and mRNAs in osteosarcoma tumorigenesis and pulmonary metastasis
Cited by: 60
Author(s): Lin Xie, Zhihong Yao, Zhang Ya, Dongqi Li, Fengdi Hu, Yedan Liao, Ling Zhou, Yonghong Zhou, Zeyong Huang, Zewei He, Lei Han, Yihao Yang, Zuozhang Yang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41419-019-1531-3
Bone marrow-derived Ly6C− macrophages promote ischemia-induced chronic kidney disease
Cited by: 39
Author(s): Qian Yang, Yuxi Wang, Guangchang Pei, Xuan Deng, Hongyang Jiang, Jianzhong Wu, Cheng Zhou, Yi Guo, Ying Yao, Rui Zeng, Gang Xu
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-13-195
Genetic variation and metabolic pathway intricacy govern the active compound content and quality of the Chinese medicinal plant Lonicera japonica thunb
Cited by: 63
Author(s): Yuan Yuan, Liguo Song, Min-Hui Li, Guiming Liu, Yanan Chu, Lai Ma, Yuanyuan Zhou, Xiao Wang, Wei Gao, Shuangshuang Qin, Jun Yu, Xumin Wang, Luqi Huang
Software Mentions: 1
Published: over 12 years ago
10.1186/1472-6750-14-58
Identification of rapidly induced genes in the response of peanut (Arachis hypogaea) to water deficit and abscisic acid
Cited by: 37
Author(s): Xiaoyun Li, Jiafeng Lü, Shuai Liu, Xu Liu, Yingying Lin, Ling Li
Software Mentions: 1
Published: over 10 years ago
10.1038/s41419-018-0825-1
Potent effect of the MDM2 inhibitor AMG232 on suppression of glioblastoma stem cells
Cited by: 44
Author(s): Nam-Gu Her, Jeong-Woo Oh, Yun Jeong Oh, Shuang Han, Hee Jin Cho, Yeri Lee, Gyu Ha Ryu, Do‐Hyun Nam
Software Mentions: 1
Published: over 6 years ago
10.1038/s41419-021-03657-0
Mutation-specific non-canonical pathway of PTEN as a distinct therapeutic target for glioblastoma
Cited by: 14
Author(s): Seung Won Choi, Yeri Lee, Ki Soon Shin, Harim Koo, Donggeon Kim, K. Jason, Hee Jin Cho, Hye mi Shin, Se Jeong Lee, Hyunho Kim, Seok Chung, Jihye Shin, Cheolju Lee, Do Hyun Nam
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-03672-1
Impaired AGO2/miR-185-3p/NRP1 axis promotes colorectal cancer metastasis
Cited by: 19
Author(s): Xisheng Liu, Xiaole Meng, Xiao Peng, Qianlan Yao, Fangming Zhu, Zhongyi Ding, Hongze Sun, Xueni Liu, Dan Li, Ying Lu, Huamei Tang, Bin Li, Zhihai Peng
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-019-1837-1
CXCR2 expression on granulocyte and macrophage progenitors under tumor conditions contributes to mo-MDSC generation via SAP18/ERK/STAT3
Cited by: 33
Author(s): Xiaoqing Han, Huifang Shi, Yingying Sun, Chao Shang, Tao Luan, Dake Wang, Xueqing Ba, Xianlu Zeng
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-017-4055-1
Physiological and de novo transcriptome analysis of the fermentation mechanism of Cerasus sachalinensis roots in response to short-term waterlogging
Cited by: 44
Author(s): Peng Zhang, Deguo Lyu, Luting Jia, Jun He, Sijun Qin
Software Mentions: 1
Published: over 7 years ago
10.1186/s12986-020-00475-7
Maternal obesity alters C19MC microRNAs expression profile in fetal umbilical cord blood
Cited by: 17
Author(s): Junjing Jia, Yingjin Wang, Yong Quan, Zhijie Wang, Yue Liu, Zhide Ding
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-020-2685-8
MiR-200b in heme oxygenase-1-modified bone marrow mesenchymal stem cell-derived exosomes alleviates inflammatory injury of intestinal epithelial cells by targeting high mobility group box 3
Cited by: 26
Author(s): Dong Sun, Huấn Cao, Yang Liu, Gang Li, Bin Hou, Weiping Zheng, Zhongyang Shen, Hongli Song
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-70635-5
De novo transcriptome analysis of Lantana camara L. revealed candidate genes involved in phenylpropanoid biosynthesis pathway
Cited by: 14
Author(s): Mohib Shah, Hesham F. Alharby, Khalid Rehman Hakeem, Niaz Ali, Inayat Ur Rahman, Mohd Munawar, Yasir Anwar
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-15-47
A comprehensive microRNA expression profile of the backfat tissue from castrated and intact full-sib pair male pigs
Cited by: 20
Author(s): Ying Bai, Jinming Huang, Gang Liu, J. Zhang, Jianying Wang, Chengkun Liu, Meiying Fang
Software Mentions: 1
Published: almost 11 years ago
10.1186/s11658-020-00234-9
Comparative transcriptome analysis of the main beam and brow tine of sika deer antler provides insights into the molecular control of rapid antler growth
Cited by: 11
Author(s): Baojin Yao, Chaonan Wang, Zhenwei Zhou, Mei Zhang, Daqing Zhao, Xueyuan Bai, Xiangyang Leng
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-71851-9
The overexpression of OsACBP5 protects transgenic rice against necrotrophic, hemibiotrophic and biotrophic pathogens
Cited by: 18
Author(s): Saritha Panthapulakkal Narayanan, Shiu‐Cheung Lung, Pan Liao, Clive Lo, Mee‐Len Chye
Software Mentions: 1
Published: about 4 years ago
10.1186/s13020-019-0244-y
A tannin compound from Sanguisorba officinalis blocks Wnt/β-catenin signaling pathway and induces apoptosis of colorectal cancer cells
Cited by: 20
Author(s): Wa Li, Chunjuan Yang, Li-qian Wang, Juan Wu, Cong Dai, Yuemei Yuan, George Q. Li, Meicun Yao
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-73716-7
Molecular changes associated with spontaneous phenotypic variation of Paenibacillus polymyxa, a commonly used biocontrol agent, and temperature-dependent control of variation
Cited by: 5
Author(s): Younmi Lee, Young Soo Kim, Kotnala Balaraju, Young Bong Seo, Jung–Wook Park, Choong Min Ryu, Seung-Hwan Park, Jihyun F. Kim, Seogchan Kang, Yongho Jeon
Software Mentions: 1
Published: about 4 years ago
10.1186/s12864-015-2357-8
De novo comparative transcriptome analysis provides new insights into sucrose induced somatic embryogenesis in camphor tree (Cinnamomum camphora L.)
Cited by: 36
Author(s): Xueping Shi, Cuijie Zhang, Qinhong Liu, Zhe Zhang, Bo Zheng, Manzhu Bao
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-020-80282-5
Comparative transcriptomic analysis for identification of candidate sex-related genes and pathways in Crimson seabream (Parargyrops edita)
Cited by: 4
Author(s): Binbin Shan, Yan Liu, Changping Yang, Yu Zhao, Donglin Sun
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-81155-1
Integrated analysis of lncRNA and mRNA transcriptomes reveals the potential regulatory role of lncRNA in kiwifruit ripening and softening
Cited by: 16
Author(s): Yi-Ting Chen, Chunzhen Cheng, Xin Feng, Ruilian Lai, Minxia Gao, Wenguang Chen, Rujian Wu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12896-017-0392-z
De novo characterization of venom apparatus transcriptome of Pardosa pseudoannulata and analysis of its gene expression in response to Bt protein
Cited by: 6
Author(s): Rong Li, Zhenzhen Yan, Juan Wang, Qisheng Song, Zhi Wang
Software Mentions: 1
Published: about 7 years ago
10.1186/s12864-020-06976-2
Comparative analysis of diet-associated responses in two rice planthopper species
Cited by: 6
Author(s): Hai‐Jian Huang, Jia‐Rong Cui, Xiao‐Yue Hong
Software Mentions: 1
Published: over 4 years ago
10.1242/dev.105346
Stochastic specification of primordial germ cells from mesoderm precursors in axolotl embryos
Cited by: 62
Author(s): Jodie Chatfield, Marie-Anne O'Reilly, Rosemary F. Bachvarova, Zoltán Ferjentsik, Catherine Redwood, Maggie Walmsley, Roger Patient, Matthew Loose, Andrew D. Johnson
Software Mentions: 1
Published: over 10 years ago
10.1002/ece3.5084
Molecular basis underlying the successful invasion of hexaploid cytotypes of <i>Solidago canadensis</i> L.: Insights from integrated gene and miRNA expression profiling
Cited by: 14
Author(s): Xu Chen, Yimeng Ge, Jianbo Wang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-021-83022-5
CXCR7 ameliorates myocardial infarction as a β-arrestin-biased receptor
Cited by: 11
Author(s): Masato Ishizuka, Mutsuo Harada, Seitaro Nomura, Toshiyuki Ko, Yuichi Ikeda, Jian Guo, Satoshi Bujo, Haruka Yanagisawa-Murakami, Masahiro Satoh, Shintaro Yamada, Hidetoshi Kumagai, Yoshihiro Motozawa, Hironori Hara, Takayuki Fujiwara, Tatsuyuki Sato, Norifumi Takeda, Norihiko Takeda, Kinya Otsu, Hiroyuki Morita, Haruhiro Toko, Issei Komuro
Software Mentions: 1
Published: almost 4 years ago
10.1002/ece3.763
Functional similarity and molecular divergence of a novel reproductive transcriptome in two male‐pregnant<i>Syngnathus</i>pipefish species
Cited by: 15
Author(s): Clayton M. Small, April D. Harlin-Cognato, Adam G. Jones
Software Mentions: 1
Published: about 11 years ago
10.1007/s10646-017-1885-1
Transcriptome assembly and expression profiling of the molecular responses to cadmium toxicity in cerebral ganglia of wolf spider Pardosa pseudoannulata (Araneae: Lycosidae)
Cited by: 17
Author(s): Huilin Yang, Yu Peng, Yixue Shi, Jianxiang Tian, Juan Wang, Xian‐Jin Peng, Conghua Xie, Xiang Xu, Qisheng Song, Zhi Wang, Ziquan Lv
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41426-018-0142-x
Subinhibitory concentrations of resveratrol reduce alpha-hemolysin production in <i>Staphylococcus aureus</i> isolates by downregulating <i>saeRS</i>
Cited by: 28
Author(s): Jingjing Duan, Meilan Li, Zhihao Hao, Xiaofei Shen, Li Liu, Yue Jin, Shanshan Wang, Yinjuan Guo, Liang Yang, Liangxing Wang, Fangyou Yu
Software Mentions: 1
Published: over 6 years ago
10.1155/2018/7265939
Guzhi Zengsheng Zhitongwan, a Traditional Chinese Medicinal Formulation, Stimulates Chondrocyte Proliferation through Control of Multiple Genes Involved in Chondrocyte Proliferation and Differentiation
Cited by: 6
Author(s): Baojin Yao, Biao Lü, Hongwei Gao, Mei Zhang, Xiangyang Leng, Daqing Zhao
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-015-1995-1
Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing
Cited by: 55
Author(s): Fangcheng Bi, Xiangchun Meng, Chao Ma, Ganjun Yi
Software Mentions: 1
Published: about 9 years ago
10.1038/s41598-021-83891-w
Identification of sex differentiation-related microRNA and long non-coding RNA in Takifugu rubripes gonads
Cited by: 16
Author(s): Hongwei Yan, Qi Liu, Jieming Jiang, Xufang Shen, Lei Zhang, Zhen Yuan, Yumeng Wu, Ying Liu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-86727-9
Identification of shell-color-related microRNAs in the Manila clam Ruditapes philippinarum using high-throughput sequencing of small RNA transcriptomes
Cited by: 8
Author(s): Jianfeng Ding, Qiang Wen, Zhongming Huo, Hongtao Nie, Yanjie Qin, Xiwu Yan
Software Mentions: 1
Published: over 3 years ago
10.1002/fsn3.2076
Increasing lactose concentration is a strategy to improve the proliferation of Lactobacillus helveticus in milk
Cited by: 1
Author(s): Jingyi Zang, Tao Wang, Piotr Dziugan, Huanxin Zhao, Bolin Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fnagi.2018.00137
Histone Deacetylase Inhibitor Alleviates the Neurodegenerative Phenotypes and Histone Dysregulation in Presenilins-Deficient Mice
Cited by: 24
Author(s): Ting Cao, Xiaojuan Zhou, Xiaoting Zheng, Yue Cui, Joseph Zhuo Tsien, Chunxia Li, Huimin Wang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-018-5199-3
Transcriptome profiling of two contrasting ornamental cabbage (Brassica oleracea var. acephala) lines provides insights into purple and white inner leaf pigmentation
Cited by: 25
Author(s): Si-Won Jin, Abdur Rahim, Khandker Shazia Afrin, Jong-In Park, Jong-Goo Kang, Ill–Sup Nou
Software Mentions: 1
Published: about 6 years ago
10.3389/fcell.2021.669798
Profiling of Sexually Dimorphic Genes in Neural Cells to Identify Eif2s3y, Whose Overexpression Causes Autism-Like Behaviors in Male Mice
Cited by: 8
Author(s): Muxian Zhang, Yunqiang Zhou, Yiru Jiang, Zhancheng Lu, Xiaoxia Xiao, Jinhuan Ning, Hao Sun, Xian Zhang, Hong Luo, Dan Can, Jinsheng Lu, Huaxi Xu, Yunwu Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fcell.2020.606001
Human Cancer Cells Sense Cytosolic Nucleic Acids Through the RIG-I–MAVS Pathway and cGAS–STING Pathway
Cited by: 21
Author(s): Yuan Qiao, Shan Zhu, Shuanglin Deng, Sheng Zou, Bao Gao, Guoxia Zang, Jing Wu, Yuxue Jiang, Yongjun Liu, Jingtao Chen
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-90807-1
Aging affects artemisinin synthesis in Artemisia annua
Cited by: 1
Author(s): Jiao Li, Xiao-Hui Chu, Xiaoyu Wang, Baomin Feng, Zhao Yu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-94365-4
Mesenchymal stem cell-derived exosomes protect trabecular meshwork from oxidative stress
Cited by: 7
Author(s): Yingchao Li, Juan Zheng, Xi-zi Wang, Xin Wang, Wenjing Liu, Jianlu Gao
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-15-974
Transcriptome of the inflorescence meristems of the biofuel plant Jatropha curcas treated with cytokinin
Cited by: 49
Author(s): Bang-Zhen Pan, Maosheng Chen, Jun Ni, Zeng-Fu Xu
Software Mentions: 1
Published: about 10 years ago
10.1038/s41598-021-94122-7
Identification of lncRNA NR_028138.1 as a biomarker and construction of a ceRNA network for bipolar disorder
Cited by: 3
Author(s): Ling He, Pengtao Zou, Wanlei Sun, Yonghui Fu, Wenfeng He, Juxiang Li
Software Mentions: 1
Published: over 3 years ago
10.3389/fendo.2020.00323
Histone Methylation of H3K4 Involved in the Anorexia of Carnivorous Mandarin Fish (Siniperca chuatsi) After Feeding on a Carbohydrate-Rich Diet
Cited by: 12
Author(s): Jun-Jie You, Ping Ren, Shan He, Xu‐Fang Liang, Qianqian Xiao, Yanpeng Zhang
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22094938
Gadolinium Protects Arabidopsis thaliana against Botrytis cinerea through the Activation of JA/ET-Induced Defense Responses
Cited by: 3
Author(s): Juliana Santos Batista-Oliveira, Damien Formey, M Torres, Wendy Aragón, Yordan Jhovani Romero-Contreras, Israel Maruri‐López, Alexandre Tromas, Kátia Regina Freitas Schwan-Estrada, Mario Serrano
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.560812
Pharmacological Effects of Novel Peptide Drugs on Allergic Rhinitis at the Small Ribonucleic Acids Level
Cited by: 1
Author(s): AN Li-feng, Zhan-Dong Li, Lin Li, Hao Li, Jing Yu
Software Mentions: 1
Published: about 4 years ago
10.1186/1471-2164-15-14
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses
Cited by: 40
Author(s): Anne Cybelle Pinto, Pablo Henrique Caracciolo Gomes de Sá, Rommel Thiago Jucá Ramos, Silvanira Barbosa, Hivana Patricia Melo Barbosa, Adriana Carneiro Ribeiro, Wanderson Marques Silva, Flávia Souza Rocha, Mariana Passos Santana, Thiago Luiz de Paula Castro, Anderson Miyoshi, Maria Paula Cruz Schneider, Artur M. S. Silva, Vasco Azevedo
Software Mentions: 1
Published: almost 11 years ago
10.3389/fgene.2019.00698
Morphological Characteristics and Comparative Transcriptome Analysis of Three Different Phenotypes of Pristella maxillaris
Cited by: 12
Author(s): Fang-Fang Bian, Xuefei Yang, Zilin Ou, Junzhi Luo, Bozhen Tan, Mingrui Yuan, Tiansheng Chen, Ruibin Yang
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2020.00052
Differential Expression and Alternative Splicing of Transcripts Associated With Cisplatin-Induced Chemoresistance in Nasopharyngeal Carcinoma
Cited by: 5
Author(s): Jian Zhang, Huali Jiang, Tao Xie, Juanjuan Zheng, Yunhong Tian, Rong Li, Baiyao Wang, Jie Lin, Anan Xu, Xiaoting Huang, Yawei Yuan
Software Mentions: 1
Published: over 4 years ago