Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DEGseq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DEGseq

Identify Differentially Expressed Genes from RNA-seq data
1 version
Latest release: about 1 year ago
96,712 downloads total

Papers Mentioning DEGseq 697

10.5713/ajas.18.0533
Comparison of characteristics of long noncoding RNA in Hanwoo according to sex
Cited by: 0
Author(s): Jae-Ho Choi, Kyeong Hye Won, Seung‐Woo Son, Donghyun Shin, Jae-Don Oh
Software Mentions: 2
Published: over 4 years ago
10.3390/genes10090704
Genetic Characteristic and RNA-Seq Analysis in Transparent Mutant of Carp–Goldfish Nucleocytoplasmic Hybrid
Cited by: 4
Author(s): Lingling Zhou, Hongwei Liang, Xin Zhou, Jingyi Jia, Ya Cheng, Qiongyao Hu, Shaohua Xu, Ying Yu, Guiwei Zou, Guangfu Hu
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-020-6734-6
Transcriptome analysis reveals differential immune related genes expression in Ruditapes philippinarum under hypoxia stress: potential HIF and NF-κB crosstalk in immune responses in clam
Cited by: 31
Author(s): Hongtao Nie, Huamin Wang, Kunyin Jiang, Xiwu Yan
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2164-15-854
Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Cited by: 33
Author(s): Sinara Artico, Marcelo Ribeiro-Alves, O. B. Oliveira-Neto, Leonardo Lima Pepino Macedo, Sylvia Rodrigues da Silveira, Maria Fátima Grossi‐de‐Sá, Adriana Pinheiro Martinelli, Márcio Alves‐Ferreira
Software Mentions: 2
Published: about 10 years ago
10.1186/s12864-018-4741-7
Transcriptomic analysis of genes in soybean in response to Peronospora manshurica infection
Cited by: 11
Author(s): Hang Dong, Shuangfeng Shi, Chong Zhang, Sihui Zhu, Li Mei, Jie Tan, Yue Yu, Liping Lin, Sun Jia, Xujing Wang, Yuanhua Wu, Yuhui Liu
Software Mentions: 2
Published: over 6 years ago
10.3390/genes11080883
Exploring the lncRNAs Related to Skeletal Muscle Fiber Types and Meat Quality Traits in Pigs
Cited by: 25
Author(s): Rongyang Li, Bojiang Li, Aiwen Jiang, Yan Cao, Liming Hou, Zengkai Zhang, Xiying Zhang, Kee‐Hong Kim, Wangjun Wu
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2020.600788
Quantitative Trait Locus (QTLs) Mapping for Quality Traits of Wheat Based on High Density Genetic Map Combined With Bulked Segregant Analysis RNA-seq (BSR-Seq) Indicates That the Basic 7S Globulin Gene Is Related to Falling Number
Cited by: 9
Author(s): Li Qiao, Zhifen Pan, Yuan Gao, Tao Li, Jinsong Liang, Zijin Zhang, Haili Zhang, Guangbing Deng, Hai Long, Maoqun Yu
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41375-019-0403-2
RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation
Cited by: 32
Author(s): Nan Zhou, Álvaro Gutiérrez-Uzquiza, Zheng Xiang, Renxu Chang, Dan T. Vogl, Alfred L. Garfall, Luca Bernabei, Anita Saraf, Laurence Florens, Michael P. Washburn, Anuradha Illendula, John H. Bushweller, Luca Busino
Software Mentions: 2
Published: almost 6 years ago
10.3389/fphys.2016.00100
Transcriptome Analysis of Differentially Expressed Genes Involved in Proanthocyanidin Accumulation in the Rhizomes of Fagopyrum dibotrys and an Irradiation-Induced Mutant
Cited by: 15
Author(s): Caixia Chen, Ailian Li
Software Mentions: 2
Published: over 8 years ago
10.1186/s12935-021-02164-8
The plasma exosomal miR-1180-3p serves as a novel potential diagnostic marker for cutaneous melanoma
Cited by: 19
Author(s): Yeye Guo, Xu Zhang, Linconghua Wang, Min Li, Minxue Shen, Zhe Zhou, Susi Zhu, Keke Li, Zhiqin Fang, Bei Yan, Shuang Zhao, Juan Su, Xiang Chen, Cong Peng
Software Mentions: 2
Published: about 3 years ago
10.1186/1471-2164-13-481
Genome wide identification of chilling responsive microRNAs in Prunus persica
Cited by: 110
Author(s): Abdelali Bara­kat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott
Software Mentions: 2
Published: almost 13 years ago
10.1002/mgg3.921
Gene expression profiles and bioinformatics analysis of insulin‐like growth factor‐1 promotion of osteogenic differentiation
Cited by: 7
Author(s): Yashuai Yuan, Ruimeng Duan, Baolin Wu, Wei Huang, Xiuzhi Zhang, Mingjia Qu, Tao Liu, Xiaobing Yu
Software Mentions: 2
Published: over 5 years ago
10.3389/fphys.2014.00487
Transcriptome analysis of host-associated differentiation in Bemisia tabaci (Hemiptera: Aleyrodidae)
Cited by: 14
Author(s): Wen Xie, Qingjun Wu, Shaoli Wang, Xiaoguo Jiao, Long Guo, Xuguo Zhou, Youjun Zhang
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12885-019-5328-7
Identification of non-invasive biomarkers for chronic atrophic gastritis from serum exosomal microRNAs
Cited by: 27
Author(s): Hong Liu, Peiwu Li, Weiqin Yang, Hong Mi, Jinglin Pan, Yuancheng Huang, Zheng-kun Hou, Qiuke Hou, Qi Luo, Fengbin Liu
Software Mentions: 2
Published: almost 6 years ago
10.3389/fpls.2017.00594
De novo Sequencing and Transcriptome Analysis Reveal Key Genes Regulating Steroid Metabolism in Leaves, Roots, Adventitious Roots and Calli of Periploca sepium Bunge
Cited by: 7
Author(s): Jian Zhang, Xinglin Li, Fuping Lu, Shan-Ying Wang, Yunhe An, Xiaoxing Su, Xiankuan Li, Lin Ma, Han Guang-jian
Software Mentions: 2
Published: over 7 years ago
10.3390/antiox9080723
Counteracting Cisplatin-Induced Testicular Damages by Natural Polyphenol Constituent Honokiol
Cited by: 18
Author(s): Tse-En Wang, Yu-Hua Lai, Kai-Chien Yang, Sung‐Jan Lin, Chih-Lin Chen, Pu-Sheng Tsai
Software Mentions: 2
Published: over 4 years ago
10.3389/fonc.2021.651644
Chrysin Induced Cell Apoptosis Through H19/let-7a/COPB2 Axis in Gastric Cancer Cells and Inhibited Tumor Growth
Cited by: 12
Author(s): Lin Chen, Qirong Li, Ziping Jiang, Chengshun Li, Haiquan Hu, Tiedong Wang, Yan Gao, Dongxu Wang
Software Mentions: 2
Published: over 3 years ago
10.1186/s40529-016-0128-8
Illumina-based transcriptomic profiling of Panax notoginseng in response to arsenic stress
Cited by: 11
Author(s): Yanfang Liu, Mi YanHua, Jianhua Zhang, Qiwan Li, Lu Chen
Software Mentions: 2
Published: over 8 years ago
10.1186/s40529-017-0185-7
Transcriptomic analyses reveal clathrin-mediated endocytosis involved in symbiotic seed germination of Gastrodia elata
Cited by: 20
Author(s): Zhiai Xu, Yuanyuan Li, Hong Ling, Sisi Liu, Mengmeng Liu, Juan Chen, Shun‐Xing Guo
Software Mentions: 2
Published: over 7 years ago
10.1186/s12985-020-01344-8
Longitudinal transcriptomic characterization of viral genes in HSV-1 infected tree shrew trigeminal ganglia
Cited by: 4
Author(s): Erlin Wang, Yunshuang Ye, Ke Zhang, Jing Yang, Daohua Gong, Jianhua Zhang, Renjun Hong, Huan Zhang, Lihong Li, Guijun Chen, Liping Yang, Jianmei Liu, Hanyu Cao, Ting Du, Nigel W. Fraser, Le Cheng, Xia Cao, Jumin Zhou
Software Mentions: 2
Published: over 4 years ago
10.1186/s40851-020-00159-3
Evidence from ileum and liver transcriptomes of resistance to high-salt and water-deprivation conditions in camel
Cited by: 2
Author(s): Dong Zhang, Jing Pan, Huanmin Zhou, Yan‐Zhong Cao
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2164-15-4
Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing
Cited by: 108
Author(s): Suying Cao, Jun Wu, Qiuyan Li, Zhong Hua Liu, Wei Zhang, Yangli Pei, Xiaoan Ruan, Xumin Wang, Bing Lim, Ning Li
Software Mentions: 2
Published: almost 11 years ago
10.3389/fmicb.2020.01443
Impact of Pb on Chlamydomonas reinhardtii at Physiological and Transcriptional Levels
Cited by: 22
Author(s): Canqi Zheng, Muhammad Aslam, Xiaojuan Liu, Hong Du, Xihui Xie, Haojie Jia, Nan Huang, Kaiming Tang, Yingquan Yang, Ping Li
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2020.523593
Chilling Stress Triggers VvAgo1-Mediated miRNA-Like RNA Biogenesis in Volvariella volvacea
Cited by: 7
Author(s): Ming Gong, Ying Wang, Jinsong Zhang, Yan Zhao, Jianing Wan, Junjun Shang, Runqiang Yang, Ying‐Ying Wu, Yán Li, Qian Tan, Dapeng Bao
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-016-2679-1
Whole organism transcriptome analysis of zebrafish models of Bardet-Biedl Syndrome and Alström Syndrome provides mechanistic insight into shared and divergent phenotypes
Cited by: 14
Author(s): Timothy L. Hostelley, Sukanya Lodh, Norann A. Zaghloul
Software Mentions: 2
Published: over 8 years ago
10.1038/srep17763
Identification and comparative analysis of complement C3-associated microRNAs in immune response of Apostichopus japonicus by high-throughput sequencing
Cited by: 19
Author(s): Lei Zhong, Zhen Feng, Yu Zhai, Yuan Cao, Si Zhang, Yaqing Chang
Software Mentions: 2
Published: almost 9 years ago
10.7717/peerj.10616
Transcriptome analysis reveals the mechanism of improving erect-plant-type peanut yield by single-seeding precision sowing
Cited by: 1
Author(s): Sha Yang, Jialei Zhang, Yi Geng, Zhongwei Tang, Wang Jian-guo, Feng Guo, Jingjing Meng, Quan Wang, Shubo Wan, Xinguo Li
Software Mentions: 2
Published: almost 4 years ago
10.3389/fonc.2021.643669
Carcinoembryonic Antigen Related Cell Adhesion Molecule 6 Promotes Carcinogenesis of Gastric Cancer and Anti-CEACAM6 Fluorescent Probe Can Diagnose the Precancerous Lesions
Cited by: 4
Author(s): Fangmei An, Chu-Wei Zheng, Guoqiang Zhang, Liang-Yun Zhou, Yuqing Wu, Hangping Zheng, Zhiyi Zhou, Ke Chen, Qiang Zhan
Software Mentions: 2
Published: over 3 years ago
10.3389/fphys.2018.00432
Identification of Chemosensory Genes Based on the Transcriptomic Analysis of Six Different Chemosensory Organs in Spodoptera exigua
Cited by: 16
Author(s): Yanan Zhang, Jie Qian, Junwei Xu, Xiu-Yun Zhu, Mengya Li, Xiaoxue Xu, Chunxiang Liu, Tao Xue, Liang Sun
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.10704
Genome-wide miRNA expression profiling in potato (<i>Solanum tuberosum</i> L.) reveals TOR-dependent post-transcriptional gene regulatory networks in diverse metabolic pathway
Cited by: 5
Author(s): Kexuan Deng, Huan Yin, Fei Xiong, Li Feng, Pan Dong, Maozhi Ren
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2017.00649
Transcriptome Analyses Reveal Candidate Pod Shattering-Associated Genes Involved in the Pod Ventral Sutures of Common Vetch (Vicia sativa L.)
Cited by: 48
Author(s): Rui Dong, Dan Dong, Dong Luo, Qiang Zhou, Xutian Chai, Jiyu Zhang, Wengang Xie, Wenxian Liu, Dong Yang, Yanrong Wang, Zhipeng Liu
Software Mentions: 2
Published: over 7 years ago
10.1186/s13068-018-1332-4
Characterization of Fatty Acid EXporters involved in fatty acid transport for oil accumulation in the green alga Chlamydomonas reinhardtii
Cited by: 37
Author(s): Nannan Li, Yan Zhang, Hongjun Meng, Shengting Li, Shufeng Wang, Zhongchun Xiao, Peng Chang, Xiaohui Zhang, Qing Li, Liang Guo, Yasuo Igarashi, Feng Luo
Software Mentions: 2
Published: almost 6 years ago
10.1042/BSR20182048
Function analysis of differentially expressed microRNAs in TGF-β1-induced cardiac fibroblasts differentiation
Cited by: 2
Author(s): Suxuan Liu, Wen Ke, Yang Liu, Zhenzhen Zhao, Li-Na An, Xiaona You, Fan Yang, Xiangqun Yang, Guokun Wang, Xianxian Zhao
Software Mentions: 2
Published: about 5 years ago
10.1038/srep36753
Transcriptomic analysis on the formation of the viable putative non-culturable state of beer-spoilage Lactobacillus acetotolerans
Cited by: 64
Author(s): Junyan Liu, Yang Deng, Brian M. Peters, Lin Li, Bing Li, Lequn Chen, Zhenbo Xu, Mark E. Shirtliff
Software Mentions: 2
Published: about 8 years ago
10.1186/s12864-018-5421-3
The genome-wide transcriptional consequences of the nullisomic-tetrasomic stocks for homoeologous group 7 in bread wheat
Cited by: 2
Author(s): Rongzhi Zhang, Shuaifeng Geng, Zhengrui Qin, Ziyang Tang, Cheng Liu, Dongfeng Liu, Guang Song, Yulian Li, Shujuan Zhang, Wei Li, Jie Gao, Xiao Han, Genying Li
Software Mentions: 2
Published: almost 6 years ago
10.1038/srep46577
High-Throughput Sequencing and Co-Expression Network Analysis of lncRNAs and mRNAs in Early Brain Injury Following Experimental Subarachnoid Haemorrhage
Cited by: 37
Author(s): Jianhua Peng, Yue Wu, Xingui Tian, Jinwei Pang, Kuai Li, Fang Cao, Xinghu Qin, Jian Zhong, LI Xin-shen, Yong Li, Xiaochuan Sun, Ligang Chen, Yong Jiang
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-017-05397-8
High throughput sequencing of RNA transcriptomes in Ruditapes philippinarum identifies genes involved in osmotic stress response
Cited by: 28
Author(s): Hongtao Nie, Liwen Jiang, Peng Chen, Zhongming Huo, Feng Yang, Xiwu Yan
Software Mentions: 2
Published: over 7 years ago
10.18632/aging.202656
Determining the influence of high glucose on exosomal lncRNAs, mRNAs, circRNAs and miRNAs derived from human renal tubular epithelial cells
Cited by: 12
Author(s): Sijie Zhou, Jiuyuan Fang, Mingyang Hu, Shaokang Pan, Dongwei Li, Guolan Xing, Zhangsuo Liu
Software Mentions: 2
Published: over 3 years ago
10.3389/fgene.2019.00779
Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field
Cited by: 9
Author(s): Yongfang Li, Kangning Wei, Menglei Wang, Li Wang, Junxia Cui, Daijing Zhang, Junqiang Guo, Miao Zhao, Yun Zheng
Software Mentions: 2
Published: about 5 years ago
10.3389/fimmu.2021.668760
Resolvin D1 Improves the Treg/Th17 Imbalance in Systemic Lupus Erythematosus Through miR-30e-5p
Cited by: 22
Author(s): Cheng Tien, Shuai Ding, Shanshan Liu, Xiaojing Li, Xiaojun Tang, Lingyun Sun
Software Mentions: 2
Published: over 3 years ago
10.1155/2019/3065818
Anticancer Effects of Emodin on HepG2 Cell: Evidence from Bioinformatic Analysis
Cited by: 19
Author(s): Ruisheng Zhou, Xiongwen Wang, Sun Qi-zhong, Zeng Jie Ye, Jianwei Liu, Dajun Zhou, Ying Tang
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-15-558
Transcriptome analysis gene expression in the liver of Coilia nasus during the stress response
Cited by: 34
Author(s): Fukuan Du, Gaosi Xu, Zhou Nie, Pao Xu, Ruobo Gu
Software Mentions: 2
Published: over 10 years ago
10.1186/s12864-016-3424-5
Determination of dosage compensation and comparison of gene expression in a triploid hybrid fish
Cited by: 22
Author(s): Li Ren, Chenchen Tang, Wuhui Li, Jialin Cui, Xing-Jun Tan, Ya-Feng Xiong, Jie Chen, Jun Wang, Jun Xiao, Yi Zhou, Jing Wang, Min Tao, Chun Zhang, Shaojun Liu
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-019-51041-y
Maternal energy insufficiency affects testicular development of the offspring in a swine model
Cited by: 3
Author(s): Yan Lin, Xue-Yu Xu, De Wu, Hao Lin, Zhengfeng Fang, Bin Feng, Shengyu Xu, Lianqiang Che, Jian Li, Yong Zhuo, Cai-Mei Wu, Junjie Zhang, Hongjun Dong
Software Mentions: 2
Published: about 5 years ago
10.1186/s12883-021-02397-0
Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing
Cited by: 8
Author(s): Dang Wei, Jian Chen, Xiaopu Chen, Shaoyan Wu, Zhaolin Chen, Yinting Huang, Zibin Shen, Wenzhen He
Software Mentions: 2
Published: about 3 years ago
10.1038/s41598-020-69943-7
Global transcriptome analysis of subterranean pod and seed in peanut (Arachis hypogaea L.) unravels the complexity of fruit development under dark condition
Cited by: 6
Author(s): Hao Liu, Xuanqiang Liang, Qing Lu, Haifen Li, Haiyan Liu, Shaoxiong Li, Rajeev K. Varshney, Yanbin Hong, Xiaoping Chen
Software Mentions: 2
Published: over 4 years ago
10.1155/2021/6650181
miRNA-mRNA Regulatory Network Reveals miRNAs in HCT116 in Response to Folic Acid Deficiency via Regulating Vital Genes of Endoplasmic Reticulum Stress Pathway
Cited by: 4
Author(s): Lin Lü, Hang Zhao, Jianjun Li, Kun Zhang, Xu Wang
Software Mentions: 2
Published: over 3 years ago
10.3389/fgene.2019.00595
Genomic and Bioinformatic Characterization of Mouse Mast Cells (P815) Upon Different Influenza A Virus (H1N1, H5N1, and H7N2) Infections
Cited by: 10
Author(s): Caiyun Huo, Hongping Wu, Jin Xiao, Di Meng, Shumei Zou, Ming Wang, Qi Peng, Haiyan Tian, Yanxin Hu
Software Mentions: 2
Published: over 5 years ago
10.3389/fgene.2019.00545
Next Generation Sequencing for Long Non-coding RNAs Profile for CD4+ T Cells in the Mouse Model of Acute Asthma
Cited by: 10
Author(s): Zhengxia Wang, Ningfei Ji, Zhongqi Chen, Chaojie Wu, Zhixiao Sun, Wenqin Yu, Fan Hu, Mao Huang, Mingshun Zhang
Software Mentions: 2
Published: over 5 years ago
10.3389/fgene.2021.627347
Multi-Omics Analysis to Examine Gene Expression and Metabolites From Multisite Adipose-Derived Mesenchymal Stem Cells
Cited by: 3
Author(s): Chuanxi Yang, Jing Zhang, Tingting Wu, Kun Zhao, Xiaoguang Wu, Jing Shi, Wei Sun, Xiangqing Kong
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0068191
Transient Exposure to Low Levels of Insecticide Affects Metabolic Networks of Honeybee Larvae
Cited by: 110
Author(s): K. Derecka, Martin Blythe, Sunir Malla, Diane P. Genereux, Alessandro Guffanti, Paolo Pavan, Anna Moles, Charles J.P. Snart, Thomas B. Ryder, Catharine A. Ortori, David A. Barrett, Eugene F. Schuster, Reinhard Stöger
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0169897
Transcriptome Profiling to Understand the Effect of Citrus Rootstocks on the Growth of ‘Shatangju’ Mandarin
Cited by: 27
Author(s): Xiangyu Liu, Juan Li, Mengmeng Liu, Qing Yao, Jiezhong Chen
Software Mentions: 2
Published: almost 8 years ago
10.1186/1471-2164-14-896
Assessment of hematopoietic failure due to Rpl11 deficiency in a zebrafish model of Diamond-Blackfan anemia by deep sequencing
Cited by: 21
Author(s): Zhaojun Zhang, Haibo Jia, Qian Zhang, Yang Wan, Yang Zhou, Qiong Jia, Wanguang Zhang, Weiping Yuan, Tao Cheng, Xiaofan Zhu, Xiangdong Fang
Software Mentions: 2
Published: almost 11 years ago
10.1186/s12915-020-00926-w
miR-31-5p regulates cold acclimation of the wood-boring beetle Monochamus alternatus via ascaroside signaling
Cited by: 26
Author(s): Bin Zhang, Lilin Zhao, Jing Ning, Jacob D. Wickham, Huanfang Tian, Xiaoming Zhang, Meiling Yang, Xiangming Wang, Sun Jian
Software Mentions: 2
Published: almost 4 years ago
10.1155/2017/4378627
Transcriptomic Analysis Reveals Genes Mediating Salt Tolerance through Calcineurin/CchA-Independent Signaling inAspergillus nidulans
Cited by: 4
Author(s): Sha Wang, Hongyu Zhou, Wu Jun, Han Jiang-yu, Shasha Li, Shengwen Shao
Software Mentions: 2
Published: almost 8 years ago
10.18632/aging.103290
Structural and functional changes of gut microbiota in ovariectomized rats and their correlations with altered bone mass
Cited by: 28
Author(s): Shaolin Ma, Jinhong Qin, Yongqiang Hao, Ying Shi, Lei Fu
Software Mentions: 2
Published: over 4 years ago
10.3389/fgene.2020.00203
Expression Profile Analysis of the Cell Cycle in Diploid and Tetraploid Carassius auratus red var.
Cited by: 2
Author(s): Li Ren, Juanjuan Lü, Yunpeng Fan, Yibo Hu, Jiaming Li, Yamei Xiao, Shaojun Liu
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2018.00434
Novel Fungal Pathogenicity and Leaf Defense Strategies Are Revealed by Simultaneous Transcriptome Analysis of Colletotrichum fructicola and Strawberry Infected by This Fungus
Cited by: 36
Author(s): Liqing Zhang, Xin Huang, Chengyong He, Qingyu Zhang, Xiaohua Zou, Danxia Ke, Qing‐Hua Gao
Software Mentions: 2
Published: over 6 years ago
10.1186/s12915-019-0643-7
The genome of the giant Nomura’s jellyfish sheds light on the early evolution of active predation
Cited by: 35
Author(s): Hak-Min Kim, Jessica A. Weber, Nayoung Lee, Seung Gu Park, Yun Sung Cho, Youngjune Bhak, Nayun Lee, Yeonsu Jeon, Sungwon Jeon, Victor Luria, Amir Karger, Marc W. Kirschner, Y. Jo, Seonock Woo, Kyoungsoon Shin, Oksung Chung, Jae‐Chun Ryu, Hyung-Soon Yim, Jung-Hyun Lee, Jeremy S. Edwards, Andrea Manica, Jong Bhak, Seungshic Yum
Software Mentions: 2
Published: over 5 years ago
10.3389/fbioe.2018.00123
Analysis of the Transcriptome in Aspergillus tamarii During Enzymatic Degradation of Sugarcane Bagasse
Cited by: 14
Author(s): G. E. O. Midorikawa, Camila Louly Corrêa, Eliane Ferreira Noronha, Edivaldo Ximenes Ferreira Filho, Roberto Coiti Togawa, Marcos Mota do Carmo Costa, Orzenil B. Silva‐Junior, Priscila Grynberg, Robert N. Miller
Software Mentions: 2
Published: about 6 years ago
10.3389/fcell.2021.653798
Whole Transcriptome Analysis Reveals a Potential Regulatory Mechanism of LncRNA-FNIP2/miR-24-3p/FNIP2 Axis in Chicken Adipogenesis
Cited by: 13
Author(s): Lingling Guo, Xiaohuan Chao, Weiling Huang, Zhenhui Li, Kang Luan, Mao Ye, Siyu Zhang, Yijie Liu, Hongmei Li, Wen Luo, Qinghua Nie, Xiquan Zhang, Qianyi Luo
Software Mentions: 2
Published: over 3 years ago
10.1186/s12870-015-0598-y
A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance
Cited by: 39
Author(s): Chen Liang, Jibiao Fan, Longxing Hu, Zhengrong Hu, Yan Xie, Yingzi Zhang, Yanhong Lou, Eviatar Nevo, Jinmin Fu
Software Mentions: 2
Published: about 9 years ago
10.1002/2211-5463.13239
Role of sericin 1 in the immune system of silkworms revealed by transcriptomic and proteomic analyses after gene knockout
Cited by: 3
Author(s): Xiaogang Ye, Shuo Zhao, Meiyu Wu, Jinghua Ruan, Xiaoli Tang, Xiaoxiao Wang
Software Mentions: 2
Published: over 3 years ago
10.1002/ece3.6574
Physiological adaptations to sugar‐mimic alkaloids: Insights from <i>Bombyx mori</i> for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: about 4 years ago
10.1002/2211-5463.12377
Micro RNA profiling during directed differentiation of cortical interneurons from human‐induced pluripotent stem cells
Cited by: 9
Author(s): Jiajie Tu, Dandan Cao, Li Lü, Hoi‐Hung Cheung, Wai‐Yee Chan
Software Mentions: 2
Published: almost 7 years ago
10.3389/fcell.2021.674939
Genetic and Functional Characterization of Novel Brown-Like Adipocytes Around the Lamprey Brain
Cited by: 1
Author(s): Xiaoluan Xu, Anqi Ma, Tiesong Li, WenXue Cui, Xuefeng Wang, Jun Li, Qingwei Li, Yue Pang
Software Mentions: 2
Published: over 3 years ago
10.1038/s42003-020-0941-1
Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism
Cited by: 26
Author(s): Xia Yu, Xiaopan Gao, Keqing Zhu, Han Yin, Xu-Jian Mao, Justyna Aleksandra Wojdyla, Bo Qin, Hairong Huang, Meitian Wang, Yicheng Sun, Sheng Cui
Software Mentions: 2
Published: over 4 years ago
10.1016/j.mib.2010.09.009
Studying bacterial transcriptomes using RNA-seq
Cited by: 233
Author(s): Nicholas J. Croucher, Nicholas R. Thomson
Software Mentions: 2
Published: about 14 years ago
10.1111/cpr.12950
CBS and MAT2A improve methionine‐mediated DNA synthesis through SAMTOR/mTORC1/S6K1/CAD pathway during embryo implantation
Cited by: 7
Author(s): Shuang Cai, Qianhong Ye, Xiaoli Zeng, Guangxin Yang, Changchuan Ye, Meixia Chen, Haitao Yu, Yuming Wang, Gang Wang, Shuo Huang, Quan Shuang, Shiyan Qiao
Software Mentions: 2
Published: about 4 years ago
10.1038/s41420-021-00413-3
The oncogene Mct-1 promotes progression of hepatocellular carcinoma via enhancement of Yap-mediated cell proliferation
Cited by: 1
Author(s): Wenjie Yang, Yicheng Ni, Shuguang Yang, Jicheng Yang, Xiaopei Yang, Feng Cheng, Xuehao Wang, Feng Zhang, Jianhua Rao
Software Mentions: 2
Published: over 3 years ago
10.1186/s12014-017-9172-y
A proteomic approach to understanding the pathogenesis of idiopathic macular hole formation
Cited by: 10
Author(s): Pingbo Zhang, Mingyan Zhu, Yuming Zhao, Jiang Qian, Craig Dufresne, Randi Turner, Richard D. Semba, Sharon D. Solomon
Software Mentions: 2
Published: about 7 years ago
10.1016/j.dib.2018.03.091
Transcriptome data of Prorocentrum donghaiense Lu under nitrogen and phosphorus limitation
Cited by: 1
Author(s): Jingjing Li, Wei Xia, Hongpo Dong, Linjian Ou
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0196537
Comparison of fruit organic acids and metabolism-related gene expression between Cerasus humilis (Bge.) Sok and Cerasus glandulosa (Thunb.) Lois
Cited by: 15
Author(s): Xiaopeng Mu, Pengfei Wang, Junjie Du, Yu Gao, Jiancheng Zhang
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0204033
Transcriptional profiling reveals that a MYB transcription factor MsMYB4 contributes to the salinity stress response of alfalfa
Cited by: 27
Author(s): Dong Wang, Xijiang Liu, Donglei Li, Tianxue Gao, Yuhan Song
Software Mentions: 2
Published: about 6 years ago
10.1186/s12864-019-6401-y
Transcriptomic analyses of Pinus koraiensis under different cold stresses
Cited by: 24
Author(s): Fang Wang, Song Chen, Dan Liang, Guanzheng Qu, Su Chen, Xiyang Zhao
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41419-019-2177-x
Vitamin D promotes the cisplatin sensitivity of oral squamous cell carcinoma by inhibiting LCN2-modulated NF-κB pathway activation through RPS3
Cited by: 46
Author(s): Zheng‐Ming Huang, Yin Zhang, Haigang Li, Yufeng Zhou, Qianyu Zhang, Rui Chen, Tingting Jin, Kaishun Hu, Shihao Li, Yan Wang, Wei‐liang Chen, Zhiquan Huang
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12870-021-03037-y
Transcriptomic resources for prairie grass (Bromus catharticus): expressed transcripts, tissue-specific genes, and identification and validation of EST-SSR markers
Cited by: 11
Author(s): Ming Sun, Zhixiao Dong, Jian Yang, Wen Bing Wu, Chenglin Zhang, Jianbo Zhang, Junlong Zhao, Yi Xiong, Shangang Jia, Xiao Ma
Software Mentions: 2
Published: over 3 years ago
10.1186/s13578-020-00473-5
Immunoprecipitation and mass spectrometry define TET1 interactome during oligodendrocyte differentiation
Cited by: 6
Author(s): Ming Zhang, Kaixiang Zhang, Jian Wang, Yuming Liu, Guangxin Liu, Weilin Jin, Shengxi Wu, Xianghui Zhao
Software Mentions: 2
Published: about 4 years ago
10.3390/cancers12040866
Integrative Radiogenomics Approach for Risk Assessment of Post-Operative Metastasis in Pathological T1 Renal Cell Carcinoma: A Pilot Retrospective Cohort Study
Cited by: 16
Author(s): Hye Won Lee, H. Cho, Je‐Gun Joung, Hwang Gyun Jeon, Byong Chang Jeong, Seong Soo Jeon, Hyun Moo Lee, Do‐Hyun Nam, Woong-Yang Park, Chan Kyo Kim, Seong Il Seo, Hyunjin Park
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0191213
Transcriptome analysis revealed the possible regulatory pathways initiating female geese broodiness within the hypothalamic-pituitary-gonadal axis
Cited by: 13
Author(s): Hehe Liu, Jiwen Wang, Li Liang, Chunchun Han, Hua He, Hengyong Xu
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0120791
Transcriptomic Analysis of the Primary Roots of Alhagi sparsifolia in Response to Water Stress
Cited by: 13
Author(s): Huanian Wu, Yongqiang Zhang, Wangbin Zhang, Xinwu Pei, Chao Zhang, Sun Jia, Weimin Liu
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0133038
Nuclease Tudor-SN Is Involved in Tick dsRNA-Mediated RNA Interference and Feeding but Not in Defense against Flaviviral or Anaplasma phagocytophilum Rickettsial Infection
Cited by: 22
Author(s): Nieves Ayllón, Victoria Naranjo, Ondřej Hajdušek, Margarita Villar, Ruth C. Galindo, Katherine M. Kocan, Pilar Alberdi, Radek Šíma, Alejandro Cabezas-Cruz, Claudia Rückert, Lesley Bell‐Sakyi, Mária Kazimírová, Sabina Havlíková, Boris Klempa, Petr Kopáček, José de la Fuente
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0227284
Transcriptome analysis clarified genes involved in resistance to Phytophthora capsici in melon
Cited by: 19
Author(s): Pingyong Wang, Haibo Wu, Guangwei Zhao, Yue He, Weihu Kong, Jian Zhang, Shuimiao Liu, Mengli Liu, Keyun Hu, Lifeng Liu, Yong Xu, Zhigao Xu
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers12030549
Sphere-Forming Culture for Expanding Genetically Distinct Patient-Derived Glioma Stem Cells by Cellular Growth Rate Screening
Cited by: 2
Author(s): Ki Soon Shin, Hong-Jae Shin, Hee Jin Cho, Hyunju Kang, Jin Ku Lee, Yun Jee Seo, Yong Jae Shin, Donggeon Kim, Harim Koo, Doo‐Sik Kong, Ho Jun Seol, Jung-Il Lee, Hye Won Lee, Do‐Hyun Nam
Software Mentions: 2
Published: over 4 years ago
10.1186/s12870-021-03168-2
Comparative transcriptomic analyses of glucosinolate metabolic genes during the formation of Chinese kale seeds
Cited by: 6
Author(s): Yijiao Zhao, Zeyuan Chen, Jiaxuan Chen, Bingxing Chen, Wenxin Tang, Xiao Chen, Lai Zhang, R. S. Guo
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0058652
Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis
Cited by: 133
Author(s): Jérémie Vidal-Dupiol, Didier Zoccola, Éric Tambutté, Christoph Grunau, Céline Cosseau, Kristina M. Smith, Michael Freitag, Nolwenn M. Dheilly, Denis Allemand, Sylvie Tambutté
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0180085
Differentially expressed microRNAs in diapausing versus HCl-treated Bombyx embryos
Cited by: 23
Author(s): Wentao Fan, Yang Zhong, Mingyue Qin, Bimin Lin, Fangyan Chen, Huichao Yan, Wenchu Li, Jizhen Lin
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0175391
RNA-seq approach to analysis of gene expression profiles in dark green islands and light green tissues of Cucumber mosaic virus-infected Nicotiana tabacum
Cited by: 6
Author(s): Lijuan Chen, Chunyan Fei, Lin Zhu, Zhe Xu, Wenshan Zou, Ting Yang, Honghui Lin, Dehui Xi
Software Mentions: 2
Published: over 7 years ago
10.1186/s12870-019-1882-z
Ethylene-mediated improvement in sucrose accumulation in ripening sugarcane involves increased sink strength
Cited by: 33
Author(s): Zhongliang Chen, Cui-Xian Qin, Miao Wang, Fang Liao, Qing Liao, Xihui Liu, Yang‐Rui Li, Prakash Lakshmanan, M. I. E. Long, Dongliang Huang
Software Mentions: 2
Published: over 5 years ago
10.1186/s12864-017-3972-3
Transcriptome profiling of tobacco (Nicotiana tabacum) pollen and pollen tubes
Cited by: 23
Author(s): Lei Liu Conze, Sofia Berlin, Aude Le Bail, Benedikt Kost
Software Mentions: 2
Published: over 7 years ago
10.1186/s12870-018-1350-1
Integration of proteomic and transcriptomic profiles reveals multiple levels of genetic regulation of salt tolerance in cotton
Cited by: 39
Author(s): Zhen Peng, Shoupu He, Wenfang Gong, Feifei Xu, Zhaoe Pan, Yulin Jia, Xianguo Geng, Xiongming Du
Software Mentions: 2
Published: over 6 years ago
10.1186/s12864-019-5442-6
Identification of lncRNAs involved in rice ovule development and female gametophyte abortion by genome-wide screening and functional analysis
Cited by: 33
Author(s): Helian Liu, Ruihua Wang, Bigang Mao, Baisuo Zhao, Jianbo Wang
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0075828
Revealing of Mycobacterium marinum Transcriptome by RNA-seq
Cited by: 15
Author(s): Sen Wang, Xinran Dong, Yaping Zhu, Chuan Wang, Gang Sun, Tāo Luò, Weidong Tian, Huajun Zheng, Qian Gao
Software Mentions: 2
Published: about 11 years ago
10.1186/1471-2105-14-278
Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data
Cited by: 22
Author(s): Mingzhu Zhu, Jeremy L. Dahmen, Gary Stacey, Jianlin Cheng
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0158028
Comparative Study on the Transcriptome of Maize Mature Embryos from Two China Elite Hybrids Zhengdan958 and Anyu5
Cited by: 5
Author(s): Jian Ma, Jingjing Li, Yongsong Cao, Lifeng Wang, Fei Wang, Hao Wang, Huiyong Li
Software Mentions: 2
Published: over 8 years ago
10.1038/s41419-020-2377-4
miR-143 promotes angiogenesis and osteoblast differentiation by targeting HDAC7
Cited by: 38
Author(s): Renkai Wang, Hao Zhang, Wenbin Ding, Zhenyu Fan, Boyao Ji, Chen Ding, Fang Ji, Hao Tang
Software Mentions: 2
Published: over 4 years ago
10.1186/s12870-016-0882-5
Comprehensive analysis and discovery of drought-related NAC transcription factors in common bean
Cited by: 34
Author(s): Jing Wu, Lanfen Wang, Shumin Wang
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0208770
Comparative transcriptome analysis provides insights into dwarfism in cherry tomato (Solanum lycopersicum var. cerasiforme)
Cited by: 6
Author(s): Abdur Rahim, Hee-Jeong Jung, Khandker Shazia Afrin, Ji Hee Lee, Ill Sup Nou
Software Mentions: 2
Published: almost 6 years ago
10.1371/journal.pone.0147369
Transcriptomic Analysis of Grapevine (cv. Summer Black) Leaf, Using the Illumina Platform
Cited by: 21
Author(s): Tariq Pervaiz, Haifeng Jia, Muhammad Salman Haider, Cheng Zhang, Mengjie Cui, Mengqi Wang, Liwen Cui, Xicheng Wang, Jinggui Fang
Software Mentions: 2
Published: almost 9 years ago
10.1186/s12870-020-2245-5
Comparative transcriptome analysis reveals the response mechanism of Cf-16-mediated resistance to Cladosporium fulvum infection in tomato
Cited by: 16
Author(s): Dongye Zhang, Yufang Bao, Yaoguang Sun, Huanhuan Yang, Tingting Zhao, Hui-Jia Li, Chong Du, Jingbin Jiang, Jin-Fu Li, Libo Xie, Xiangyang Xu
Software Mentions: 2
Published: almost 5 years ago