Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: DEGseq

https://packages.ecosyste.ms/registries/bioconductor.org/packages/DEGseq

Identify Differentially Expressed Genes from RNA-seq data
1 version
Latest release: about 1 year ago
96,712 downloads total

Papers Mentioning DEGseq 697

10.1371/journal.pone.0147147
Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori
Cited by: 94
Author(s): Yuqian Wu, Tingcai Cheng, Chun Li, Duolian Liu, Quan Zhang, Rodney Long, Ping Zhao, Qingyou Xia
Software Mentions: 3
Published: almost 9 years ago
10.3390/ijms16023493
Transcriptome Profiling and Identification of Transcription Factors in Ramie (Boehmeria nivea L. Gaud) in Response to PEG Treatment, Using Illumina Paired-End Sequencing Technology
Cited by: 38
Author(s): Xiaopeng An, Jie Chen, Jingyu Zhang, Yu-Cai Liao, Lunjin Dai, Bo Wang, Lijun Liu, Dingxiang Peng
Software Mentions: 3
Published: almost 10 years ago
10.7554/eLife.20068
Methylated cis-regulatory elements mediate KLF4-dependent gene transactivation and cell migration
Cited by: 38
Author(s): Jun Wan, Yijing Su, Qifeng Song, Brian Tung, Olutobi Oyinlade, Sheng Liu, Mingyao Ying, Ming Guo, Hongjun Song, Jiang Qian, Heng Zhu, Shuli Xia
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0036234
Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]
Cited by: 140
Author(s): Tao Xiang, Yinghong Gu, Haiyan Wang, Wen Zheng, Xiao Li, Chuan-Wu Zhao, Yizheng Zhang
Software Mentions: 3
Published: over 12 years ago
10.1155/2018/5912194
Pyroptosis of MCF7 Cells Induced by the Secreted Factors of hUCMSCs
Cited by: 16
Author(s): Yang Jiao, Hang Zhao, Guodong Chen, Xiongbo Sang, Luhan Yang, Zhen Hou, Wei Si, Bingrong Zheng
Software Mentions: 3
Published: about 6 years ago
10.7554/eLife.42426
TRIM28 promotes HIV-1 latency by SUMOylating CDK9 and inhibiting P-TEFb
Cited by: 61
Author(s): Xiancai Ma, Tao Yang, Yong Luo, Liyang Wu, Yawen Jiang, Sifa Zheng, Ting Pan, Bingfeng Liu, Guangyan Liu, Jun Li, Fei Yu, Zhangping He, Wanying Zhang, Jinyu Yang, Liting Liang, Yuanjun Guan, Xu Zhang, Linghua Li, Weiping Cai, Xiaoping Tang, Song Gao, Kai Deng, Hui Zhang
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0130262
How Many Genes Are Expressed in a Transcriptome? Estimation and Results for RNA-Seq
Cited by: 31
Author(s): Luis Fernando García-Ortega, Octavio Martínez
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0209061
Exploring differentially expressed key genes related to development of follicle by RNA-seq in Peking ducks (Anas Platyrhynchos)
Cited by: 14
Author(s): Jinjun Ren, Changsen Sun, Li Chen, Jianhong Hu, Xuetao Huang, Xiaolin Liu, Lizhi Liu
Software Mentions: 3
Published: over 5 years ago
10.3390/biology10090885
Metabolic Regulation of Sugar Assimilation for Lipid Production in Aspergillus oryzae BCC7051 through Comparative Transcriptome Perspective
Cited by: 5
Author(s): Tayvich Vorapreeda, Bhimabol Khongto, Chinae Thammarongtham, Tanawut Srisuk, Kobkul Laoteng
Software Mentions: 3
Published: about 3 years ago
10.1038/srep27357
Identification of differentially expressed genes from multipotent epithelia at the onset of an asexual development
Cited by: 16
Author(s): Lorenzo Ricci, Ankita Chaurasia, Pascal Lapébie, Philippe Dru, Rebecca R. Helm, Richard R. Copley, Stefano Tiozzo
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-019-42170-5
Comparative transcriptome profiling of low light tolerant and sensitive rice varieties induced by low light stress at active tillering stage
Cited by: 30
Author(s): Sudhanshu Sekhar, Darshan Panda, Jitendra Kumar, Nihar Nalini Mohanty, Monalisha Biswal, M. J. Baig, Awadhesh Kumar, Umakanta Ngangkham, Sanghamitra Samantaray, Sharat Kumar Pradhan, Birendra Prasad Shaw, Padmini Swain, Lambodar Behera
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-019-5760-8
Identification and profiling of upland cotton microRNAs at fiber initiation stage under exogenous IAA application
Cited by: 19
Author(s): Tianlun Zhao, Xiaojian Xu, Min Wang, Li Cheng, Cong Liu, Zhao RuBing, Shuijin Zhu, Qiuling He, Jinhong Chen
Software Mentions: 3
Published: over 5 years ago
10.1111/jcmm.15183
PTBP1 modulates osteosarcoma chemoresistance to cisplatin by regulating the expression of the copper transporter SLC31A1
Cited by: 33
Author(s): Cheng Cheng, Qiuyue Ding, Zhicai Zhang, Shangyu Wang, Botao Zhong, Xin Huang
Software Mentions: 3
Published: over 4 years ago
10.1186/s12958-017-0319-5
Integration analysis of microRNA and mRNA paired expression profiling identifies deregulated microRNA-transcription factor-gene regulatory networks in ovarian endometriosis
Cited by: 53
Author(s): Lei Zhao, Chenglei Gu, Mingxia Ye, Zhe Zhang, Lian Li, Wensheng Fan, Yuanguang Meng
Software Mentions: 3
Published: almost 7 years ago
10.3390/genes11091000
Comparative Transcriptome Analysis of Pine Trees Treated with Resistance-Inducing Substances against the Nematode Bursaphelenchus xylophilus
Cited by: 6
Author(s): Jung–Wook Park, Hee Won Jeon, Hyejung Jung, Hyun‐Hee Lee, Junheon Kim, Ae Ran Park, Namgyu Kim, Gil Soo Han, Jin-Cheol Kim, Young-Su Seo
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pgen.1008675
Tryptamine accumulation caused by deletion of MrMao-1 in Metarhizium genome significantly enhances insecticidal virulence
Cited by: 19
Author(s): Xiaowei Tong, Yundan Wang, Pengcheng Yang, Chengshu Wang, Le Kang
Software Mentions: 3
Published: over 4 years ago
10.1186/s12870-017-1165-5
Genome-wide analysis of the auxin/indoleacetic acid (Aux/IAA) gene family in allotetraploid rapeseed (Brassica napus L.)
Cited by: 27
Author(s): Haitao Li, Bo Wang, Qinghua Zhang, Jing Wang, Graham J. King, Kede Liu
Software Mentions: 3
Published: about 7 years ago
10.7717/peerj.8185
Global transcriptome analysis of different stages of preimplantation embryo development in river buffalo
Cited by: 2
Author(s): Chaoyou Pang, Mingzhou Bai, Chi Zhang, Junhui Chen, Xingrong Lu, Tingxian Deng, Xiaoya Ma, Anqin Duan, Shasha Liang, Yun-Qi Huang, Zhihui Xiu, Xianwei Liang
Software Mentions: 3
Published: almost 5 years ago
10.1186/s13007-018-0337-0
Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants
Cited by: 81
Author(s): Fu Yuan Zhu, Mo Xian Chen, Nenghui Ye, Wang Min Qiao, Bei Gao, Wai Ki Law, Yuan Tian, Dong Zhang, Di Zhang, Tie Yuan Liu, Qi Hu, Yun Cao, Ze Zhuo Su, Jianhua Zhang, Ying Gao Liu
Software Mentions: 3
Published: over 6 years ago
10.3390/genes11090991
Escherichia coli Increases its ATP Concentration in Weakly Acidic Environments Principally through the Glycolytic Pathway
Cited by: 20
Author(s): Wenbin Zhang, Xin Chen, Wei Sun, Tao Nie, Natalie Quanquin, Yirong Sun
Software Mentions: 3
Published: about 4 years ago
10.3390/insects12090809
Solitary Living Brings a Decreased Weight and an Increased Agility to the Domestic Silkworm, Bombyx mori
Cited by: 2
Author(s): Zhenglin Zhu, Yuting Tan, Siyu Xiao, Zhufen Guan, Wen Zhao, Zhijun Dai, Gexin Liu, Ze Zhang
Software Mentions: 3
Published: about 3 years ago
10.3389/fpls.2018.01218
Distinct Lotus japonicus Transcriptomic Responses to a Spectrum of Bacteria Ranging From Symbiotic to Pathogenic
Cited by: 35
Author(s): Simon Kelly, Terry Mun, Jens Stougaard, Cécile Ben, Stig Uggerhøj Andersen
Software Mentions: 3
Published: over 6 years ago
10.1186/1471-2164-15-294
Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei
Cited by: 39
Author(s): Peng Zhou, Guoqiang Zhang, Shangwu Chen, Zhengqiang Jiang, Yanbin Tang, Bernard Henrissat, Qiaojuan Yan, Shaoqing Yang, Chin‐Fu Chen, Bing Zhang, Zhenglin Du
Software Mentions: 3
Published: over 10 years ago
10.3389/fpls.2021.699464
The New Is Old: Novel Germination Strategy Evolved From Standing Genetic Variation in Weedy Rice
Cited by: 4
Author(s): Chengchuan Zhou, Yang Feng, Gengyun Li, Mengli Wang, Jinjing Jian, Yuguo Wang, Wenju Zhang, Zilin Song, Linfeng Li, Bao‐Rong Lu, Ji Yang
Software Mentions: 3
Published: over 3 years ago
10.3389/fonc.2021.621462
Gene Expression Profile of the Human Colorectal Carcinoma LoVo Cells Treated With Sporamin and Thapsigargin
Cited by: 3
Author(s): Chun Yang, Si-Jia Chen, Bowen Chen, Kai-Wen Zhang, Jingjie Zhang, Rong Xiao, Peng-Gao Li
Software Mentions: 3
Published: over 3 years ago
10.1186/1471-2105-14-S5-S16
Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing
Cited by: 41
Author(s): Xi Wang, Murray J. Cairns
Software Mentions: 3
Published: over 11 years ago
10.3389/fmicb.2021.693574
Integrated Analysis of microRNA and mRNA Transcriptome Reveals the Molecular Mechanism of Solanum lycopersicum Response to Bemisia tabaci and Tomato chlorosis virus
Cited by: 3
Author(s): Ya Hao, Liping Huang, Ding-Yi-Hui Lu, Zhanhong Zhang, Zhuo Zhang, Deyong Zhang, Limin Zheng, Yang Gao, Xinqiu Tan, Xuguo Zhou, Xiaolu Shi, Yong Liu
Software Mentions: 3
Published: over 3 years ago
10.3389/fpls.2018.00034
Transcriptomic and Functional Analyses Reveal That PpGLK1 Regulates Chloroplast Development in Peach (Prunus persica)
Cited by: 22
Author(s): Min Chen, Xiao Liu, Shenghui Jiang, Binbin Wen, Chunrong Yang, Wei Xiao, Xiling Fu, Dongmei Li, Xiude Chen, Dongsheng Gao, Ling Li
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2018.00340
Integrative Analyses of Transcriptome Sequencing Identify Functional miRNAs in the Chicken Embryo Fibroblasts Cells Infected With Reticuloendotheliosis Virus
Cited by: 6
Author(s): Jie Zhai, Chang Gao, Lisheng Fu, Long Jiang, Shengyuan Dang, Shangen Zheng
Software Mentions: 3
Published: about 6 years ago
10.3389/fgene.2020.00321
Identification and Integrated Analysis of MicroRNA and mRNA Expression Profiles During Agonistic Behavior in Chinese Mitten Crab (Eriocheir sinensis) Using a Deep Sequencing Approach
Cited by: 4
Author(s): Yangyang Pang, Long He, Yameng Song, Xiaozhe Song, Jiahuan Lv, Yongxu Cheng, Xiaozhen Yang
Software Mentions: 3
Published: over 4 years ago
10.3389/fgene.2021.654146
MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean
Cited by: 3
Author(s): Chunbao Zhang, Fuyou Fu, Chunjing Lin, Xiaoyang Ding, Jingyong Zhang, Hao Yan, Pengnian Wang, Wei Zhang, Bao Peng, Limei Zhao
Software Mentions: 3
Published: over 3 years ago
10.3390/molecules24081587
Anticandidal Potential of Stem Bark Extract from Schima superba and the Identification of Its Major Anticandidal Compound
Cited by: 2
Author(s): Chun Fu Wu, Hongtan Wu, Qing Wang, Guey‐Horng Wang, Xue Yang, Yu-Pei Chen, Guang‐Xiong Zhou
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2021.655900
Genome-Wide DNA Methylation and Transcriptome Analyses Reveal Epigenetic and Genetic Mechanisms Underlying Sex Maintenance of Adult Chinese Alligator
Cited by: 4
Author(s): Jianqing Lin, Jun Yu, Li Sun, Sheng‐Guo Fang
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0031526
The Transcriptome of Compatible and Incompatible Interactions of Potato (Solanum tuberosum) with Phytophthora infestans Revealed by DeepSAGE Analysis
Cited by: 55
Author(s): Gabor Gyetvai, Mads Sønderkær, Ulrike Göbel, Rico Basekow, Agim Ballvora, Maren Imhoff, Birgit Kersten, Kåre Lehmann Nielsen, Christiane Gebhardt
Software Mentions: 3
Published: almost 13 years ago
10.1186/s12864-018-5021-2
Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos
Cited by: 20
Author(s): Fengrui Wu, Yong Liu, Qingqing Wu, Dengkun Li, Ling Zhang, Xiaoqing Wu, Rong Wang, Di Zhang, Shaorong Gao, Wenyong Li
Software Mentions: 3
Published: over 6 years ago
10.1186/1297-9716-42-114
Characterization of the abomasal transcriptome for mechanisms of resistance to gastrointestinal nematodes in cattle
Cited by: 40
Author(s): Robert W. Li, Manuela Rinaldi, Anthony Capuco
Software Mentions: 3
Published: almost 14 years ago
10.3389/fmicb.2017.00716
Effects of Inhibitors on the Transcriptional Profiling of Gluconobater oxydans NL71 Genes after Biooxidation of Xylose into Xylonate
Cited by: 16
Author(s): Yuanyuan Miao, Yi Shen, Yong Xu
Software Mentions: 3
Published: over 7 years ago
10.3389/fgene.2019.01128
Transcriptome of Gonads From High Temperature Induced Sex Reversal During Sex Determination and Differentiation in Chinese Tongue Sole, Cynoglossus semilaevis
Cited by: 33
Author(s): Qian Wang, Kaiqiang Liu, Bo Feng, Zhihua Zhang, Renkai Wang, Lili Tang, Wensheng Li, Qiye Li, Francesc Piferrer, Changwei Shao
Software Mentions: 3
Published: about 5 years ago
10.3390/genes10030201
Transcriptomic Analysis of Coding Genes and Non-Coding RNAs Reveals Complex Regulatory Networks Underlying the Black Back and White Belly Coat Phenotype in Chinese Wuzhishan Pigs
Cited by: 6
Author(s): Qiao Xu, Ximing Liu, Zhe Chao, Kejun Wang, Jue Wang, Qiguo Tang, Yabiao Luo, Jie Zheng, Shanzhong Tan, Meiying Fang
Software Mentions: 3
Published: over 5 years ago
10.1186/s13287-021-02585-2
In vitro genome editing rescues parkinsonism phenotypes in induced pluripotent stem cells-derived dopaminergic neurons carrying LRRK2 p.G2019S mutation
Cited by: 14
Author(s): Kuo‐Hsuan Chang, Cheng‐Yen Huang, Chih-Hsin Ou-Yang, Chang-Han Ho, Hon‐Yi Lin, Chih‐Cheng Hsu, You-Tzung Chen, Yu‐Chi Chou, Yijing Chen, Ying Chen, Jiali Lin, Ji-Kuan Wang, Pei‐Wen Lin, Ying-Ru Lin, Miao-Hsia Lin, C. K. Tseng, Chin-Hsien Lin
Software Mentions: 3
Published: about 3 years ago
10.1186/s12870-020-02508-y
Genome-wide identification and integrated analysis of lncRNAs in rice backcross introgression lines (BC2F12)
Cited by: 8
Author(s): Mengdi Li, Aqin Cao, Ruihua Wang, Zeyu Li, Shaoqing Li, Jianbo Wang
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-213X-14-15
Integrated proteomic and transcriptomic analysis of the Aedes aegyptieggshell
Cited by: 58
Author(s): Osvaldo Marinotti, Tuan Ngo, Bianca Burini Kojin, Shao‐Pei Chou, Brian D. Nguyen, Jennifer Juhn, Rebeca Carballar-Lejarazú, Pedro N. Marinotti, Xiaofang Jiang, Marika F. Walter, Zhijian Tu, Paul D. Gershon, Anthony A. James
Software Mentions: 2
Published: over 10 years ago
10.1002/2211-5463.12377
Micro RNA profiling during directed differentiation of cortical interneurons from human‐induced pluripotent stem cells
Cited by: 9
Author(s): Jiajie Tu, Dandan Cao, Li Lü, Hoi‐Hung Cheung, Wai‐Yee Chan
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12870-019-1682-5
Comparative transcriptome analyses on terpenoids metabolism in field- and mountain-cultivated ginseng roots
Cited by: 19
Author(s): Hang Fan, Ke Li, Yao Fan, Liwei Sun, Yujun Liu
Software Mentions: 2
Published: almost 6 years ago
10.3389/fbioe.2018.00123
Analysis of the Transcriptome in Aspergillus tamarii During Enzymatic Degradation of Sugarcane Bagasse
Cited by: 14
Author(s): G. E. O. Midorikawa, Camila Louly Corrêa, Eliane Ferreira Noronha, Edivaldo Ximenes Ferreira Filho, Roberto Coiti Togawa, Marcos Mota do Carmo Costa, Orzenil B. Silva‐Junior, Priscila Grynberg, Robert N. Miller
Software Mentions: 2
Published: about 6 years ago
10.1186/s12883-021-02397-0
Screening for differentially expressed circRNAs in ischemic stroke by RNA sequencing
Cited by: 8
Author(s): Dang Wei, Jian Chen, Xiaopu Chen, Shaoyan Wu, Zhaolin Chen, Yinting Huang, Zibin Shen, Wenzhen He
Software Mentions: 2
Published: about 3 years ago
10.1186/s12867-019-0129-8
Key genes differential expressions and pathway involved in salt and water-deprivation stresses for renal cortex in camel
Cited by: 5
Author(s): Yan‐Zhong Cao, Dong Zhang, Huanmin Zhou
Software Mentions: 2
Published: over 5 years ago
10.1002/ece3.6574
Physiological adaptations to sugar‐mimic alkaloids: Insights from <i>Bombyx mori</i> for long‐term adaption and short‐term response
Cited by: 4
Author(s): S. R. Jia, Yinghui Li, Xiaojing Dai, Xiaotong Li, Yanyan Zhou, Ye Xu, Huabing Wang
Software Mentions: 2
Published: about 4 years ago
10.1002/2211-5463.13239
Role of sericin 1 in the immune system of silkworms revealed by transcriptomic and proteomic analyses after gene knockout
Cited by: 3
Author(s): Xiaogang Ye, Shuo Zhao, Meiyu Wu, Jinghua Ruan, Xiaoli Tang, Xiaoxiao Wang
Software Mentions: 2
Published: over 3 years ago
10.3389/fcell.2021.653798
Whole Transcriptome Analysis Reveals a Potential Regulatory Mechanism of LncRNA-FNIP2/miR-24-3p/FNIP2 Axis in Chicken Adipogenesis
Cited by: 13
Author(s): Lingling Guo, Xiaohuan Chao, Weiling Huang, Zhenhui Li, Kang Luan, Mao Ye, Siyu Zhang, Yijie Liu, Hongmei Li, Wen Luo, Qinghua Nie, Xiquan Zhang, Qianyi Luo
Software Mentions: 2
Published: over 3 years ago
10.1186/s12014-017-9172-y
A proteomic approach to understanding the pathogenesis of idiopathic macular hole formation
Cited by: 10
Author(s): Pingbo Zhang, Mingyan Zhu, Yuming Zhao, Jiang Qian, Craig Dufresne, Randi Turner, Richard D. Semba, Sharon D. Solomon
Software Mentions: 2
Published: about 7 years ago
10.1038/s42003-020-0941-1
Characterization of a toxin-antitoxin system in Mycobacterium tuberculosis suggests neutralization by phosphorylation as the antitoxicity mechanism
Cited by: 26
Author(s): Xia Yu, Xiaopan Gao, Keqing Zhu, Han Yin, Xu-Jian Mao, Justyna Aleksandra Wojdyla, Bo Qin, Hairong Huang, Meitian Wang, Yicheng Sun, Sheng Cui
Software Mentions: 2
Published: over 4 years ago
10.1186/s12911-019-0964-z
Expression alteration of microRNAs in Nucleus Accumbens is associated with chronic stress and antidepressant treatment in rats
Cited by: 10
Author(s): Weichen Song, Yifeng Shen, Yanhua Zhang, Shoujiao Peng, Ran Zhang, Ailing Ning, Huafang Li, Xia Li, Guan Ning Lin, Shunying Yu
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.mib.2010.09.009
Studying bacterial transcriptomes using RNA-seq
Cited by: 233
Author(s): Nicholas J. Croucher, Nicholas R. Thomson
Software Mentions: 2
Published: about 14 years ago
10.1186/s12920-016-0174-9
Transcriptome analysis reveals a ribosome constituents disorder involved in the RPL5 downregulated zebrafish model of Diamond-Blackfan anemia
Cited by: 31
Author(s): Yang Wan, Qian Zhang, Zhaojun Zhang, Binfeng Song, Xiaomin Wang, Yingchi Zhang, Qiong Jia, Tao Cheng, Xiaofan Zhu, Anskar Y. H. Leung, Weiping Yuan, Haibo Jia, Xiangdong Fang
Software Mentions: 2
Published: over 8 years ago
10.1186/s12864-016-2679-1
Whole organism transcriptome analysis of zebrafish models of Bardet-Biedl Syndrome and Alström Syndrome provides mechanistic insight into shared and divergent phenotypes
Cited by: 14
Author(s): Timothy L. Hostelley, Sukanya Lodh, Norann A. Zaghloul
Software Mentions: 2
Published: over 8 years ago
10.1186/1471-2164-15-1052
Early transcriptional changes in the reef-building coral Acropora aspera in response to thermal and nutrient stress
Cited by: 64
Author(s): Nedeljka Rosic, Paulina Kaniewska, Chon‐Kit Kenneth Chan, Edmund Y. S. Ling, David Edwards, Sophie Dove, Ove Høegh-Guldberg
Software Mentions: 2
Published: almost 11 years ago
10.1111/cpr.12950
CBS and MAT2A improve methionine‐mediated DNA synthesis through SAMTOR/mTORC1/S6K1/CAD pathway during embryo implantation
Cited by: 7
Author(s): Shuang Cai, Qianhong Ye, Xiaoli Zeng, Guangxin Yang, Changchuan Ye, Meixia Chen, Haitao Yu, Yuming Wang, Gang Wang, Shuo Huang, Quan Shuang, Shiyan Qiao
Software Mentions: 2
Published: about 4 years ago
10.1016/j.dib.2018.03.091
Transcriptome data of Prorocentrum donghaiense Lu under nitrogen and phosphorus limitation
Cited by: 1
Author(s): Jingjing Li, Wei Xia, Hongpo Dong, Linjian Ou
Software Mentions: 2
Published: over 6 years ago
10.3389/fcell.2021.674939
Genetic and Functional Characterization of Novel Brown-Like Adipocytes Around the Lamprey Brain
Cited by: 1
Author(s): Xiaoluan Xu, Anqi Ma, Tiesong Li, WenXue Cui, Xuefeng Wang, Jun Li, Qingwei Li, Yue Pang
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2164-15-4
Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing
Cited by: 108
Author(s): Suying Cao, Jun Wu, Qiuyan Li, Zhong Hua Liu, Wei Zhang, Yangli Pei, Xiaoan Ruan, Xumin Wang, Bing Lim, Ning Li
Software Mentions: 2
Published: almost 11 years ago
10.1038/s41419-019-2177-x
Vitamin D promotes the cisplatin sensitivity of oral squamous cell carcinoma by inhibiting LCN2-modulated NF-κB pathway activation through RPS3
Cited by: 46
Author(s): Zheng‐Ming Huang, Yin Zhang, Haigang Li, Yufeng Zhou, Qianyu Zhang, Rui Chen, Tingting Jin, Kaishun Hu, Shihao Li, Yan Wang, Wei‐liang Chen, Zhiquan Huang
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12885-019-5328-7
Identification of non-invasive biomarkers for chronic atrophic gastritis from serum exosomal microRNAs
Cited by: 27
Author(s): Hong Liu, Peiwu Li, Weiqin Yang, Hong Mi, Jinglin Pan, Yuancheng Huang, Zheng-kun Hou, Qiuke Hou, Qi Luo, Fengbin Liu
Software Mentions: 2
Published: almost 6 years ago
10.1186/1471-2164-13-567
The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain
Cited by: 25
Author(s): Stefano Campanaro, Fabio De Pascale, Andrea Telatin, Riccardo Schiavon, Douglas H. Bartlett, Giorgio Valle
Software Mentions: 2
Published: almost 13 years ago
10.1186/s13578-020-00473-5
Immunoprecipitation and mass spectrometry define TET1 interactome during oligodendrocyte differentiation
Cited by: 6
Author(s): Ming Zhang, Kaixiang Zhang, Jian Wang, Yuming Liu, Guangxin Liu, Weilin Jin, Shengxi Wu, Xianghui Zhao
Software Mentions: 2
Published: about 4 years ago
10.1038/s41419-020-2377-4
miR-143 promotes angiogenesis and osteoblast differentiation by targeting HDAC7
Cited by: 38
Author(s): Renkai Wang, Hao Zhang, Wenbin Ding, Zhenyu Fan, Boyao Ji, Chen Ding, Fang Ji, Hao Tang
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-015-2019-x
De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway
Cited by: 40
Author(s): Zhenyan Miao, Wei Xu, Daofeng Li, Xiaona Hu, Jiaxing Liu, Rongxue Zhang, Zongyong Tong, Jiangli Dong, Zhen Su, Liwei Zhang, Min Sun, Wenjie Li, Zhenglin Du, Songnian Hu, Tao Wang
Software Mentions: 2
Published: about 9 years ago
10.1186/1471-2164-15-854
Transcriptome analysis of Gossypium hirsutum flower buds infested by cotton boll weevil (Anthonomus grandis) larvae
Cited by: 33
Author(s): Sinara Artico, Marcelo Ribeiro-Alves, O. B. Oliveira-Neto, Leonardo Lima Pepino Macedo, Sylvia Rodrigues da Silveira, Maria Fátima Grossi‐de‐Sá, Adriana Pinheiro Martinelli, Márcio Alves‐Ferreira
Software Mentions: 2
Published: about 10 years ago
10.5713/ajas.18.0473
Expression profiles of microRNAs in skeletal muscle of sheep by deep sequencing
Cited by: 15
Author(s): Zhijin Liu, Cunyuan Li, Xiaoyue Li, Yang Yao, Wei Ni, Xiangyu Zhang, Yang Cao, Wureli Hazi, Dawei Wang, Renzhe Quan, Shuting Yu, Yu‐Yu Wu, Songmin Niu, Yulong Cui, Yaseen Khan, Shengwei Hu
Software Mentions: 2
Published: over 5 years ago
10.5713/ajas.18.0533
Comparison of characteristics of long noncoding RNA in Hanwoo according to sex
Cited by: 0
Author(s): Jae-Ho Choi, Kyeong Hye Won, Seung‐Woo Son, Donghyun Shin, Jae-Don Oh
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-020-6448-9
Transcriptomic analysis of gene expression of Verticillium dahliae upon treatment of the cotton root exudates
Cited by: 10
Author(s): Xinyu Zhang, Cheng Wei, Zhidi Feng, Qian Zhu, Yuqiang Sun, Yanjun Li, Jie Sun
Software Mentions: 2
Published: almost 5 years ago
10.3390/cancers12030549
Sphere-Forming Culture for Expanding Genetically Distinct Patient-Derived Glioma Stem Cells by Cellular Growth Rate Screening
Cited by: 2
Author(s): Ki Soon Shin, Hong-Jae Shin, Hee Jin Cho, Hyunju Kang, Jin Ku Lee, Yun Jee Seo, Yong Jae Shin, Donggeon Kim, Harim Koo, Doo‐Sik Kong, Ho Jun Seol, Jung-Il Lee, Hye Won Lee, Do‐Hyun Nam
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0133038
Nuclease Tudor-SN Is Involved in Tick dsRNA-Mediated RNA Interference and Feeding but Not in Defense against Flaviviral or Anaplasma phagocytophilum Rickettsial Infection
Cited by: 22
Author(s): Nieves Ayllón, Victoria Naranjo, Ondřej Hajdušek, Margarita Villar, Ruth C. Galindo, Katherine M. Kocan, Pilar Alberdi, Radek Šíma, Alejandro Cabezas-Cruz, Claudia Rückert, Lesley Bell‐Sakyi, Mária Kazimírová, Sabina Havlíková, Boris Klempa, Petr Kopáček, José de la Fuente
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0227284
Transcriptome analysis clarified genes involved in resistance to Phytophthora capsici in melon
Cited by: 19
Author(s): Pingyong Wang, Haibo Wu, Guangwei Zhao, Yue He, Weihu Kong, Jian Zhang, Shuimiao Liu, Mengli Liu, Keyun Hu, Lifeng Liu, Yong Xu, Zhigao Xu
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pone.0089330
Evidence of a Critical Role for Cellodextrin Transporte 2 (CDT-2) in Both Cellulose and Hemicellulose Degradation and Utilization in Neurospora crassa
Cited by: 30
Author(s): Pengli Cai, Ruimeng Gu, Bang Wang, Jingen Li, Li Wan, Chaoguang Tian, Yanhe Ma
Software Mentions: 2
Published: almost 11 years ago
10.1186/1471-2164-14-S5-S8
Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes
Cited by: 29
Author(s): Ruosi Zhang, Lili Hao, Lingping Wang, Meili Chen, Wen Li, Rujiao Li, Jun Yu, Jingfa Xiao, Jiayan Wu
Software Mentions: 2
Published: about 11 years ago
10.1186/s12864-017-3556-2
Response of microRNAs to cold treatment in the young spikes of common wheat
Cited by: 60
Author(s): Guang Song, Rongzhi Zhang, Shujuan Zhang, Yulian Li, Jie Gao, Xiao Han, Mingli Chen, Jiao Wang, Wei Li, Genying Li
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0180085
Differentially expressed microRNAs in diapausing versus HCl-treated Bombyx embryos
Cited by: 23
Author(s): Wentao Fan, Yang Zhong, Mingyue Qin, Bimin Lin, Fangyan Chen, Huichao Yan, Wenchu Li, Jizhen Lin
Software Mentions: 2
Published: over 7 years ago
10.3390/cancers12040866
Integrative Radiogenomics Approach for Risk Assessment of Post-Operative Metastasis in Pathological T1 Renal Cell Carcinoma: A Pilot Retrospective Cohort Study
Cited by: 16
Author(s): Hye Won Lee, H. Cho, Je‐Gun Joung, Hwang Gyun Jeon, Byong Chang Jeong, Seong Soo Jeon, Hyun Moo Lee, Do‐Hyun Nam, Woong-Yang Park, Chan Kyo Kim, Seong Il Seo, Hyunjin Park
Software Mentions: 2
Published: over 4 years ago
10.1038/s41420-021-00413-3
The oncogene Mct-1 promotes progression of hepatocellular carcinoma via enhancement of Yap-mediated cell proliferation
Cited by: 1
Author(s): Wenjie Yang, Yicheng Ni, Shuguang Yang, Jicheng Yang, Xiaopei Yang, Feng Cheng, Xuehao Wang, Feng Zhang, Jianhua Rao
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2164-12-82
RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti
Cited by: 124
Author(s): Mariangela Bonizzoni, William A. Dunn, Corey L. Campbell, Ken E. Olson, Michelle Dimon, Osvaldo Marinotti, Anthony A. James
Software Mentions: 2
Published: almost 14 years ago
10.1186/s12864-020-6734-6
Transcriptome analysis reveals differential immune related genes expression in Ruditapes philippinarum under hypoxia stress: potential HIF and NF-κB crosstalk in immune responses in clam
Cited by: 31
Author(s): Hongtao Nie, Huamin Wang, Kunyin Jiang, Xiwu Yan
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-018-4741-7
Transcriptomic analysis of genes in soybean in response to Peronospora manshurica infection
Cited by: 11
Author(s): Hang Dong, Shuangfeng Shi, Chong Zhang, Sihui Zhu, Li Mei, Jie Tan, Yue Yu, Liping Lin, Sun Jia, Xujing Wang, Yuanhua Wu, Yuhui Liu
Software Mentions: 2
Published: over 6 years ago
10.1038/s41375-019-0403-2
RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation
Cited by: 32
Author(s): Nan Zhou, Álvaro Gutiérrez-Uzquiza, Zheng Xiang, Renxu Chang, Dan T. Vogl, Alfred L. Garfall, Luca Bernabei, Anita Saraf, Laurence Florens, Michael P. Washburn, Anuradha Illendula, John H. Bushweller, Luca Busino
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12935-021-02164-8
The plasma exosomal miR-1180-3p serves as a novel potential diagnostic marker for cutaneous melanoma
Cited by: 19
Author(s): Yeye Guo, Xu Zhang, Linconghua Wang, Min Li, Minxue Shen, Zhe Zhou, Susi Zhu, Keke Li, Zhiqin Fang, Bei Yan, Shuang Zhao, Juan Su, Xiang Chen, Cong Peng
Software Mentions: 2
Published: about 3 years ago
10.1186/1471-2164-13-481
Genome wide identification of chilling responsive microRNAs in Prunus persica
Cited by: 110
Author(s): Abdelali Bara­kat, Aditya Sriram, Joseph Park, Tetyana Zhebentyayeva, Dorrie Main, Albert Abbott
Software Mentions: 2
Published: almost 13 years ago
10.3390/antiox9080723
Counteracting Cisplatin-Induced Testicular Damages by Natural Polyphenol Constituent Honokiol
Cited by: 18
Author(s): Tse-En Wang, Yu-Hua Lai, Kai-Chien Yang, Sung‐Jan Lin, Chih-Lin Chen, Pu-Sheng Tsai
Software Mentions: 2
Published: over 4 years ago
10.1186/s40529-016-0128-8
Illumina-based transcriptomic profiling of Panax notoginseng in response to arsenic stress
Cited by: 11
Author(s): Yanfang Liu, Mi YanHua, Jianhua Zhang, Qiwan Li, Lu Chen
Software Mentions: 2
Published: over 8 years ago
10.1186/s40529-017-0185-7
Transcriptomic analyses reveal clathrin-mediated endocytosis involved in symbiotic seed germination of Gastrodia elata
Cited by: 20
Author(s): Zhiai Xu, Yuanyuan Li, Hong Ling, Sisi Liu, Mengmeng Liu, Juan Chen, Shun‐Xing Guo
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0054880
Ectopic Overexpression of SlHsfA3, a Heat Stress Transcription Factor from Tomato, Confers Increased Thermotolerance and Salt Hypersensitivity in Germination in Transgenic Arabidopsis
Cited by: 76
Author(s): Zhenjun Li, Lili Zhang, Aoxue Wang, Xiangyang Xu, Jin-Fu Li
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0204033
Transcriptional profiling reveals that a MYB transcription factor MsMYB4 contributes to the salinity stress response of alfalfa
Cited by: 27
Author(s): Dong Wang, Xijiang Liu, Donglei Li, Tianxue Gao, Yuhan Song
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0196537
Comparison of fruit organic acids and metabolism-related gene expression between Cerasus humilis (Bge.) Sok and Cerasus glandulosa (Thunb.) Lois
Cited by: 15
Author(s): Xiaopeng Mu, Pengfei Wang, Junjie Du, Yu Gao, Jiancheng Zhang
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0197729
Transcriptome analysis of the typical freshwater rhodophytes Sheathia arcuata grown under different light intensities
Cited by: 11
Author(s): Fangru Nan, Jia Feng, Junping Lv, Qi Liu, Shulian Xie
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0075828
Revealing of Mycobacterium marinum Transcriptome by RNA-seq
Cited by: 15
Author(s): Sen Wang, Xinran Dong, Yaping Zhu, Chuan Wang, Gang Sun, Tāo Luò, Weidong Tian, Huajun Zheng, Qian Gao
Software Mentions: 2
Published: about 11 years ago
10.1186/s13068-018-1332-4
Characterization of Fatty Acid EXporters involved in fatty acid transport for oil accumulation in the green alga Chlamydomonas reinhardtii
Cited by: 37
Author(s): Nannan Li, Yan Zhang, Hongjun Meng, Shengting Li, Shufeng Wang, Zhongchun Xiao, Peng Chang, Xiaohui Zhang, Qing Li, Liang Guo, Yasuo Igarashi, Feng Luo
Software Mentions: 2
Published: almost 6 years ago
10.1042/BSR20182048
Function analysis of differentially expressed microRNAs in TGF-β1-induced cardiac fibroblasts differentiation
Cited by: 2
Author(s): Suxuan Liu, Wen Ke, Yang Liu, Zhenzhen Zhao, Li-Na An, Xiaona You, Fan Yang, Xiangqun Yang, Guokun Wang, Xianxian Zhao
Software Mentions: 2
Published: about 5 years ago
10.1186/s12864-018-5421-3
The genome-wide transcriptional consequences of the nullisomic-tetrasomic stocks for homoeologous group 7 in bread wheat
Cited by: 2
Author(s): Rongzhi Zhang, Shuaifeng Geng, Zhengrui Qin, Ziyang Tang, Cheng Liu, Dongfeng Liu, Guang Song, Yulian Li, Shujuan Zhang, Wei Li, Jie Gao, Xiao Han, Genying Li
Software Mentions: 2
Published: almost 6 years ago
10.18632/aging.202656
Determining the influence of high glucose on exosomal lncRNAs, mRNAs, circRNAs and miRNAs derived from human renal tubular epithelial cells
Cited by: 12
Author(s): Sijie Zhou, Jiuyuan Fang, Mingyang Hu, Shaokang Pan, Dongwei Li, Guolan Xing, Zhangsuo Liu
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0191213
Transcriptome analysis revealed the possible regulatory pathways initiating female geese broodiness within the hypothalamic-pituitary-gonadal axis
Cited by: 13
Author(s): Hehe Liu, Jiwen Wang, Li Liang, Chunchun Han, Hua He, Hengyong Xu
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0175391
RNA-seq approach to analysis of gene expression profiles in dark green islands and light green tissues of Cucumber mosaic virus-infected Nicotiana tabacum
Cited by: 6
Author(s): Lijuan Chen, Chunyan Fei, Lin Zhu, Zhe Xu, Wenshan Zou, Ting Yang, Honghui Lin, Dehui Xi
Software Mentions: 2
Published: over 7 years ago