bioconductor: ConsensusClusterPlus | Projects

10.1155/2021/6699808

Glycolysis-Related Genes Serve as Potential Prognostic Biomarkers in Clear Cell Renal Cell Carcinoma
Cited by: 26
Author(s): Yan Zhang, Mingying Chen, Meihong Liu, Yingkun Xu, Guangzhen Wu
Software Mentions: 3
Published: over 3 years ago

10.7150/ijbs.49243

Deciphering the genomic and lncRNA landscapes of aerobic glycolysis identifies potential therapeutic targets in pancreatic cancer
Cited by: 14
Author(s): Lili Zhu, Zheng Wu, Rongkun Li, Xin Xing, Yongsheng Jiang, Jun Li, Yahui Wang, Li-Peng Hu, Xu Wang, Weiting Qin, Yongwei Sun, Zhigang Zhang, Qin Yang, Shu‐Heng Jiang
Software Mentions: 3
Published: over 3 years ago

10.1186/s13148-021-01000-0

MethCORR infers gene expression from DNA methylation and allows molecular analysis of ten common cancer types using fresh-frozen and formalin-fixed paraffin-embedded tumor samples
Cited by: 0
Author(s): Trine B. Mattesen, Claus Lindbjerg Andersen, Jesper B. Bramsen
Software Mentions: 3
Published: over 3 years ago

10.1186/s40425-019-0660-7

Epigenetic alterations are associated with tumor mutation burden in non-small cell lung cancer
Cited by: 28
Author(s): Lun Cai, Hua Bai, Jianchun Duan, Zhijie Wang, Shugeng Gao, Di Wang, Shuhang Wang, Jun Jiang, Jiefei Han, Yanhua Tian, Xue Zhang, Yue Hao, Minghui Li, Bingding Huang, Jie He, Jie Wang
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2018.00422

Identification of miR-200c and miR141-Mediated lncRNA-mRNA Crosstalks in Muscle-Invasive Bladder Cancer Subtypes
Cited by: 17
Author(s): Guojun Liu, Zihao Chen, И. Г. Данилова, Mikhail A. Bolkov, Irina A. Tuzankina, Guoqing Liu
Software Mentions: 3
Published: over 5 years ago

10.1101/2020.08.03.235242

Robotic High-Throughput Biomanufacturing and Functional Differentiation of Human Pluripotent Stem Cells
Cited by: 3
Author(s): Carlos A. Tristan, Pinar Ormanoglu, Jaroslav Slamecka, Claire Malley, Pei-Hsuan Chu, Vukasin M. Jovanovic, Yeliz Gedik, Charles Bonney, Elena Barnaeva, John C. Braisted, Sunil K. Mallanna, Dorjbal Dorjsuren, Michael J. Iannotti, Ty C. Voss, Sam Michael, Anton Simeonov, Ilyas Singeç
Software Mentions: 3
Published: almost 4 years ago

10.7150/thno.36585

Comprehensive characterization of the alternative splicing landscape in head and neck squamous cell carcinoma reveals novel events associated with tumorigenesis and the immune microenvironment
Cited by: 66
Author(s): Zhixuan Li, Zi-Qi Zheng, Zhuo-Hui Wei, Lulu Zhang, Li Feng, Lin Li, Ruiqi Liu, Xiao-Dan Huang, Jiawei Lv, Fo-Ping Chen, Xiaoxi He, Jia-Li Guan, Jia Kou, Jingfei Ma, Guan-Qun Zhou
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.657531

Genomic Analysis of Glioblastoma Multiforme Reveals a Key Transcription Factor Signature Relevant to Prognosis and the Immune Processes
Cited by: 6
Author(s): Zhen-Hang Li, Yanlei Guan, Guobin Zhang
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.ppat.1008870

Eomes cannot replace its paralog T-bet during expansion and differentiation of CD8 effector T cells
Cited by: 7
Author(s): Jonas Fixemer, Jonas Hummel, Frederic Arnold, Christoph S. N. Klose, Alexis Hofherr, Kristoffer Weißert, Tamara Kögl, Michael Köttgen, Sebastian J. Arnold, Peter Aichele, Yakup Tanriver
Software Mentions: 3
Published: over 3 years ago

10.1002/1878-0261.12309

Specific breast cancer prognosis‐subtype distinctions based on<scp>DNA</scp>methylation patterns
Cited by: 62
Author(s): Shumei Zhang, Yihan Wang, Yue Gu, Jiang Zhu, Ce Ci, Zhongfu Guo, Chuangeng Chen, Yanjun Wei, Wenhua Lv, Hongbo Liu, Dongwei Zhang, Yan Zhang
Software Mentions: 3
Published: about 6 years ago

10.1186/s12885-020-07216-2

Comprehensive analysis of prognostic tumor microenvironment-related genes in osteosarcoma patients
Cited by: 19
Author(s): Chuan Hu, Chuan Liu, Shaoqi Tian, Yuanhe Wang, Rui Shen, Huili Rao, Jianyi Li, Yu Xu, Bo Chen, Ye Lin
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2021.716854

Comprehensive Analysis of the Immune Infiltrates of Pyroptosis in Kidney Renal Clear Cell Carcinoma
Cited by: 17
Author(s): Zhuolun Sun, Changying Jing, Xudong Guo, Mingxiao Zhang, Feng Kong, Zhenqing Wang, Shaobo Jiang, Hanbo Wang
Software Mentions: 3
Published: over 2 years ago

10.1371/journal.pone.0056823

Molecular Subtypes in Head and Neck Cancer Exhibit Distinct Patterns of Chromosomal Gain and Loss of Canonical Cancer Genes
Cited by: 257
Author(s): Vonn Walter, Xiaoying Yin, Matthew D. Wilkerson, Christopher R. Cabanski, Ni Zhao, Ying Du, Mei Kim Ang, Michele C. Hayward, Ashley H. Salazar, Katherine A. Hoadley, Karen Fritchie, Charles J. Sailey, Mark C. Weissler, W. Shockley, Adam M. Zanation, Trevor Hackman, Leigh B. Thorne, W. D. Funkhouser, Kenneth L. Muldrew, Andrew F. Olshan, Scott H. Randell, Fred A. Wright, Carol G. Shores, D. Neil Hayes
Software Mentions: 3
Published: over 11 years ago

10.1038/s41416-018-0309-1

The immunologic constant of rejection classification refines the prognostic value of conventional prognostic signatures in breast cancer
Cited by: 45
Author(s): François Bertucci, Pascal Finetti, Ines Simeone, Wouter Hendrickx, Ena Wang, Francesco M. Marincola, Patrice Viens, Émilie Mamessier, Michele Ceccarelli, Daniel Birnbaum, Davide Bedognetti
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2021.651406

A Novel Immune-Related Prognostic Model for Response to Immunotherapy and Survival in Patients With Lung Adenocarcinoma
Cited by: 28
Author(s): Zheng Yang, He Tian, Zheng Zhou, Xiao Chu, Hengchang Liu, Yu Liu, Li-Yu Wang, Tao Fan, Bo Zheng, Fengwei Tan, Qi Xue, Gengshu Gao, Chunxiang Li, Jie He
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-021-84465-6

B2M overexpression correlates with malignancy and immune signatures in human gliomas
Cited by: 34
Author(s): Hao Zhang, Biqi Cui, Yulai Zhou, Xinxing Wang, Wantao Wu, Zeyu Wang, Ziyu Dai, Quan Cheng, Kui Yang
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-017-19100-4

Single-cell RNA-sequencing resolves self-antigen expression during mTEC development
Cited by: 28
Author(s): Ricardo J. Miragaia, Xiuwei Zhang, Tomás Gomes, Valentine Svensson, Tomislav Ilicic, Johan Henriksson, Gozde Kar, Tapio Lönnberg
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2021.669145

Landscape of Prognostic m6A RNA Methylation Regulators in Hepatocellular Carcinoma to Aid Immunotherapy
Cited by: 7
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Nanjun Li, Ruiqi Mu, Zhixuan Qi, Yunuo Shen, Zijie Wang, Jingchao Wen, Jiaxin Zhao, Di Weng, Wen Huang
Software Mentions: 3
Published: almost 3 years ago

10.1038/s41598-019-41625-z

Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data
Cited by: 12
Author(s): Lázaro Betancourt, Krzysztof Pawłowski, Jonatan Eriksson, Attila Marcell Szász, Shamik Mitra, Indira Pla, Charlotte Welinder, Henrik Ekedahl, Per Broberg, Roger Appelqvist, Maria Yakovleva, Y. Sugita, Kenichi Miharada, Christian Ingvar, Lotta Lundgren, Bo Baldetorp, Håkan Olsson, Melinda Rezeli, Elisabet Wieslander, Péter Horvatovich, Johan Malm, Göran Jönsson, György Markó-Varga
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2019.01038

m6A RNA Methylation Regulators Contribute to Malignant Progression and Have Clinical Prognostic Impact in Gastric Cancer
Cited by: 68
Author(s): Yue Su, Jinqi Huang, Jichang Hu
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2021.645912

Identification of Tumor Microenvironment-Related Alternative Splicing Events to Predict the Prognosis of Endometrial Cancer
Cited by: 4
Author(s): Xuan Li, Chuan Liu, Jie Liu, Ying Song, Shanshan Wang, Miaoqing Wu, Shanshan Yu, Luya Cai
Software Mentions: 3
Published: about 3 years ago

10.3389/fimmu.2021.648917

Deciphering the Prognostic Implications of the Components and Signatures in the Immune Microenvironment of Pancreatic Ductal Adenocarcinoma
Cited by: 34
Author(s): Rong Tang, Xiaomeng Liu, Chen Liang, Jie Hua, Jin Xu, Wei Wang, Qingcai Meng, Jiang Liu, Bo Zhang, Xianjun Yu, Si Shi
Software Mentions: 3
Published: about 3 years ago

10.3389/fmed.2020.00556

Expression Pattern and Prognostic Value of Key Regulators for m6A RNA Modification in Hepatocellular Carcinoma
Cited by: 12
Author(s): Lele Zhang, Yiting Qiao, Jiacheng Huang, Dalong Wan, Lin Zhou, Shigang Lin, Shusen Zheng
Software Mentions: 3
Published: over 3 years ago

10.4049/jimmunol.2100063

Defining T Cell Subsets in Human Tonsils Using ChipCytometry
Cited by: 3
Author(s): Joachim Hagel, Kyle Bennett, Francesca M. Buffa, Paul Klenerman, Christian Willberg, Kate Powell
Software Mentions: 3
Published: almost 3 years ago

10.1186/s12935-021-02033-4

Immune signature-based hepatocellular carcinoma subtypes may provide novel insights into therapy and prognosis predictions
Cited by: 13
Author(s): Qiuxian Zheng, Qin Yang, Jiaming Zhou, Xinyu Gu, Haibo Zhou, Xuejun Dong, Haihong Zhu, Zhi Chen
Software Mentions: 3
Published: almost 3 years ago

10.3389/fonc.2021.598017

m6A RNA Methylation Regulators Impact Prognosis and Tumor Microenvironment in Renal Papillary Cell Carcinoma
Cited by: 9
Author(s): Lianze Chen, Baohui Hu, Xinyue Song, Lin Wang, Mingyi Ju, Zinan Li, Chuanjian Zhou, Ming Zhang, Wei Qian, Qiutong Guan, Longyang Jiang, Ting Chen, Minjie Wei, Lin Zhao
Software Mentions: 3
Published: about 3 years ago

10.3389/fimmu.2021.711433

Landscape of Immune Microenvironment Under Immune Cell Infiltration Pattern in Breast Cancer
Cited by: 54
Author(s): Qianhui Xu, Shaohuai Chen, Yuanbo Hu, Wen Huang
Software Mentions: 3
Published: almost 3 years ago

10.1097/MD.0000000000025031

Expression patterns and prognostic value of m6A RNA methylation regulators in adrenocortical carcinoma
Cited by: 6
Author(s): Fusheng Yang, Shanshan Sun, Jianbin Bi, Chuize Kong, Lei Yin
Software Mentions: 2
Published: about 3 years ago

10.3389/fcell.2021.573497

Integrated Analysis of Immune Infiltration Features for Cervical Carcinoma and Their Associated Immunotherapeutic Responses
Cited by: 18
Author(s): Yi Lan Kang, Jin Huang, Yang Liu, Nan Zhang, Quan Cheng, Yi Zhang
Software Mentions: 2
Published: about 3 years ago

10.18632/aging.102492

Molecular subtypes based on DNA methylation predict prognosis in colon adenocarcinoma patients
Cited by: 33
Author(s): Changshun Yang, Yu Zhang, Xiaoqin Xu, Weihua Li
Software Mentions: 2
Published: over 4 years ago

10.1155/2020/2053902

Prognostic Value of an m6A RNA Methylation Regulator-Based Signature in Patients with Hepatocellular Carcinoma
Cited by: 22
Author(s): Xiaomin Wu, Xiaojing Zhang, Leilei Tao, Xichao Dai, Ping Chen
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers12123562

Single-Cell Spatial Analysis of Tumor and Immune Microenvironment on Whole-Slide Image Reveals Hepatocellular Carcinoma Subtypes
Cited by: 14
Author(s): Haiyue Wang, Yuming Jiang, Bailiang Li, Yi Cui, Dengwang Li
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/5514726

Distinct Molecular Subtypes of Diffuse Large B Cell Lymphoma Patients Treated with Rituximab-CHOP Are Associated with Different Clinical Outcomes and Molecular Mechanisms
Cited by: 3
Author(s): Hong Yu, Shuang Peng, Songling Han, Xi Chen, Qinghua Lyu, Lei Tao
Software Mentions: 2
Published: almost 3 years ago

10.3389/fonc.2021.709579

m6A Regulator-Mediated Methylation Modification Model Predicts Prognosis, Tumor Microenvironment Characterizations and Response to Immunotherapies of Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Wenhao Xu, Xi Tian, Wangrui Liu, Aihetaimujiang Anwaier, Jiaqi Su, Wenkai Zhu, Fangning Wan, Guohai Shi, Gaomeng Wei, Yuanyuan Qu, Ye Zhang, Dingwei Ye
Software Mentions: 2
Published: almost 3 years ago

10.1186/s12943-014-0286-9

ID helix-loop-helix proteins as determinants of cell survival in B-cell chronic lymphocytic leukemia cells in vitro
Cited by: 13
Author(s): Sarah R. Weiler, Jolaolu A Ademokun, John D. Norton
Software Mentions: 2
Published: over 9 years ago

10.3389/fonc.2020.554165

Comprehensive Study of Tumor Immune Microenvironment and Relevant Genes in Hepatocellular Carcinoma Identifies Potential Prognostic Significance
Cited by: 7
Author(s): Wenbiao Chen, Xujun Zhang, Kefan Bi, Hetong Zhou, Jia Xu, Yong Dai, Hongyan Diao
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.666561

Integrative Analysis of Gene Expression Through One-Class Logistic Regression Machine Learning Identifies Stemness Features in Multiple Myeloma
Cited by: 2
Author(s): Chunmei Ban, Feiyan Yang, Min Wei, Qin Liu, Jiankun Wang, Lei Chen, Liuting Lu, Dongmei Xie, Lie Liu, Jinxiong Huang
Software Mentions: 2
Published: almost 3 years ago

10.3389/fgene.2020.614566

Contributions and Prognostic Values of N6-Methyladenosine RNA Methylation Regulators in Hepatocellular Carcinoma
Cited by: 8
Author(s): Li-Wen Qi, Jianhui Jia, Cuncang Jiang, Jianming Hu
Software Mentions: 2
Published: over 3 years ago

10.1186/s12967-020-02492-9

A hypoxia-related signature for clinically predicting diagnosis, prognosis and immune microenvironment of hepatocellular carcinoma patients
Cited by: 93
Author(s): Baohui Zhang, Bufu Tang, Jianyao Gao, Jiatong Li, Lingming Kong, Ling Qin
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2021.708294

DNA Damage Response and Repair Gene Alterations Increase Tumor Mutational Burden and Promote Poor Prognosis of Advanced Lung Cancer
Cited by: 11
Author(s): Jing Dai, Minlin Jiang, Kan He, Hao Wang, Peixin Chen, Haoyue Guo, Wencheng Zhao, Hui Lü, Yayi He, Caicun Zhou
Software Mentions: 2
Published: over 2 years ago

10.1371/journal.pone.0087449

Composition of Microbial Oral Biofilms during Maturation in Young Healthy Adults
Cited by: 28
Author(s): Daniela Langfeldt, Sven C. Neulinger, Wieland Heuer, Ingmar Staufenbiel, Sven Künzel, John F. Baines, Jörg Eberhard, Ruth A. Schmitz
Software Mentions: 2
Published: over 10 years ago

10.3389/fonc.2019.01019

Multi-omics Analysis of Microenvironment Characteristics and Immune Escape Mechanisms of Hepatocellular Carcinoma
Cited by: 51
Author(s): Wenli Li, Huimei Wang, Zhu Ma, Jian Zhang, Wen Ouyang, Qi Yan, Jun Li
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0229075

miRNA profiling in renal carcinoma suggest the existence of a group of pro-angionenic tumors in localized clear cell renal carcinoma
Cited by: 6
Author(s): Lucía Trilla-Fuertes, Nahir Miranda, Daniel Castellano, Rocío López-Vacas, Carlos A. Farfán Tello, Guillermo Velasco, Felipe Villacampa, Elena López-Camacho, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Enrique Espinosa, Juan Ángel Fresno Vara, Álvaro Pinto, Angelo Gámez‐Pozo
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.562574

Ceramide Pathway Regulators Predict Clinical Prognostic Risk and Affect the Tumor Immune Microenvironment in Lung Adenocarcinoma
Cited by: 4
Author(s): Yuan Zhang, Jianbo Chen, Yunan Zhao, Lihong Weng, Yiquan Xu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41420-020-00295-x

The prognostic value of six survival-related genes in bladder cancer
Cited by: 7
Author(s): Songbai Cheng, Jiang Zhou, Jing Xiao, Huiling Guo, Zhengrong Wang, Yuhui Wang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fonc.2020.00183

Genomics and Prognosis Analysis of Epithelial-Mesenchymal Transition in Glioma
Cited by: 54
Author(s): Chuming Tao, Kai Huang, Jin Shi, Qing Hu, Kuangxun Li, Xingen Zhu
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-019-6086-2

A qualitative transcriptional signature for the histological reclassification of lung squamous cell carcinomas and adenocarcinomas
Cited by: 9
Author(s): Xin Li, Gengen Shi, Qingsong Chu, Wenbin Jiang, Yixin Liu, Sainan Zhang, Zheyang Zhang, Zixin Wei, Fei He, Zheng Guo, Lishuang Qi
Software Mentions: 2
Published: over 4 years ago

10.3389/fendo.2021.631680

Integrated Whole-Exome and Transcriptome Sequencing of Sporadic Parathyroid Adenoma
Cited by: 10
Author(s): Ya Hu, Xiang Zhang, Ou Wang, Ming Cui, Xiaobin Li, Mengyi Wang, Surong Hua, Quan Liao
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2021.726034

Activity of Wnt/PCP Regulation Pathway Classifies Patients of Low-Grade Glioma Into Molecularly Distinct Subgroups With Prognostic Difference
Cited by: 1
Author(s): Meng Zhang, Dan Wang, Lan Su, Jingjiao Ma, Sizhen Wang, Meng Cui, Shunming Hong, Bing Guan, Xiaodong Ma
Software Mentions: 2
Published: almost 3 years ago

10.1111/cpr.12634

Inferring immune‐associated signatures based on a co‐expression network in Guillain‐Barré syndrome
Cited by: 1
Author(s): Xiaoming Zhang, Huixue Zhang, Zhaojun Liu, Ruijuan Guan, Jianjian Wang, Xiaotong Kong, Lixia Chen, Chunrui Bo, Jie Li, Ming Bai, Xiaoyu Lu, Jia Shen, Lihua Wang, Mian Guo
Software Mentions: 2
Published: about 5 years ago

10.1186/s13073-019-0669-z

Long non-coding RNAs identify a subset of luminal muscle-invasive bladder cancer patients with favorable prognosis
Cited by: 30
Author(s): Joep J. de Jong, Yang Liu, A. Gordon Robertson, Roland Seiler, Clarice S. Groeneveld, Michiel S. van der Heijden, Jonathan L. Wright, James J. Douglas, Marc Dall’Era, Simon J. Crabb, Bas W.G. van Rhijn, Kim E.M. van Kessel, Elai Davicioni, Mauro A. A. Castro, Yair Lotan, Ellen C. Zwarthoff, Peter C. Black, Joost L. Boormans, Ewan A. Gibb
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0127768

The Longitudinal Transcriptomic Response of the Substantia Nigra to Intrastriatal 6-Hydroxydopamine Reveals Significant Upregulation of Regeneration-Associated Genes
Cited by: 17
Author(s): Nicholas M. Kanaan, Timothy J. Collier, Allyson Cole-Strauss, Tessa Grabinski, Zachary R. Mattingly, Mary E. Winn, Kathy Steece‐Collier, Caryl E. Sortwell, Fredric P. Manfredsson, Jack W. Lipton
Software Mentions: 2
Published: about 9 years ago

10.1186/s13148-020-00940-3

Identification of the subtypes of gastric cancer based on DNA methylation and the prediction of prognosis
Cited by: 10
Author(s): Tengda Li, Xin Chen, Mingli Gu, Anmei Deng, Cheng Qing
Software Mentions: 2
Published: over 3 years ago

10.7150/jca.41193

Prognostic values of m6A RNA methylation regulators in differentiated Thyroid Carcinoma
Cited by: 14
Author(s): Nizhen Xu, Jian Chen, Guannan He, Li Gao, Deguang Zhang
Software Mentions: 2
Published: over 4 years ago

10.7150/jca.45296

Identification of a Glucose Metabolism-related Signature for prediction of Clinical Prognosis in Clear Cell Renal Cell Carcinoma
Cited by: 13
Author(s): Sheng Wang, Ling Zhang, Zhihong Yu, Kequn Chai, Jiabin Chen
Software Mentions: 2
Published: over 4 years ago

10.1186/s12885-020-07596-5

Systematic profiling of diagnostic and prognostic value of autophagy-related genes for sarcoma patients
Cited by: 2
Author(s): Yuanhe Wang, Jianyi Li, Chen Shao, Xiaojie Tang, Yukun Du, Tongshuai Xu, Zheng Zhao, Huiqiang Hu, Yingyi Sheng, Chuan Hu, Yongming Xi
Software Mentions: 2
Published: over 3 years ago

10.1186/s12885-019-5858-z

Biological molecular layer classification of muscle-invasive bladder cancer opens new treatment opportunities
Cited by: 15
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, Jorge M. Arevalillo, María Ferrer-Gómez, Hilario Navarro, Paloma Maı́n, Enrique Espinosa, Álvaro Pinto, Juan Ángel Fresno Vara
Software Mentions: 2
Published: almost 5 years ago

10.3390/jcm10194441

Machine Learning Consensus Clustering Approach for Hospitalized Patients with Phosphate Derangements
Cited by: 7
Author(s): Charat Thongprayoon, Carissa Dumancas, Voravech Nissaisorakarn, Mira T. Keddis, Andrea G. Kattah, Pattharawin Pattharanitima, Tananchai Petnak, Saraschandra Vallabhajosyula, Vesna D. Garovic, Michael A Mao, John Dillon, Stephen B. Erickson, Wisit Cheungpasitporn
Software Mentions: 2
Published: over 2 years ago

10.1002/prca.202100037

A proteomic investigation of isogenic radiation resistant prostate cancer cell lines
Cited by: 3
Author(s): Natalie Kurganovs, Hanzhi Wang, Xiaoyong Huang, Vladimir Ignatchenko, Andrew Macklin, Shahbaz Khan, Michelle Downes, Paul C. Boutros, Stanley K. Liu, Thomas Kislinger
Software Mentions: 2
Published: almost 3 years ago

10.1038/srep16018

Expression profiling of prostate cancer tissue delineates genes associated with recurrence after prostatectomy
Cited by: 89
Author(s): Martin M. Mortensen, Søren Høyer, Anne-Sophie Lynnerup, Torben F. Ørntoft, Karina D. Sørensen, Michael Borre, Lars Dyrskjøt
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-03354-z

Splice variants as novel targets in pancreatic ductal adenocarcinoma
Cited by: 25
Author(s): Jun Wang, Laurent Dumartin, Andrea Mafficini, Pinar Ulug, Ajanthah Sangaralingam, Namaa Audi Alamiry, Tomasz P. Radon, Roberto Salvia, Rita T. Lawlor, Nick R. Lemoine, Aldo Scarpa, Claude Chelala, Tatjana Crnogorac‐Jurčević
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0232520

Low LEF1 expression is a biomarker of early T-cell precursor, an aggressive subtype of T-cell lymphoblastic leukemia
Cited by: 4
Author(s): Mei Wang, Chi Zhang
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-017-1798-2

Unsupervised deep learning reveals prognostically relevant subtypes of glioblastoma
Cited by: 40
Author(s): Jonathan D. Young, Chunhui Cai, Xinghua Lu
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-91560-1

Tumor metabolism and associated serum metabolites define prognostic subtypes of Asian hepatocellular carcinoma
Cited by: 7
Author(s): Yotsawat Pomyen, Anuradha Budhu, Jittiporn Chaisaingmongkol, Marshonna Forgues, Hien Dang, Mathuros Ruchirawat, Chulabhorn Mahidol, Xin Wei Wang
Software Mentions: 2
Published: almost 3 years ago

10.7150/thno.58039

Genomic and transcriptional alterations in first-line chemotherapy exert a potentially unfavorable influence on subsequent immunotherapy in NSCLC
Cited by: 11
Author(s): Yayi He, Linsong Chen, Lishu Zhao, Shiying Dang, Guifeng Liu, Shinji Sasada, C. Patrick, Nico van Zandwijk, Rafael Rosell, Helmut Popper, Hao Wang, Minlin Jiang, Haoyue Guo, Xinyi Liu, Shifu Chen, Xiaoni Zhang, Mingyan Xu, Bo Zhu, Ming Liu, Caicun Zhou
Software Mentions: 2
Published: over 3 years ago

10.1038/s41398-020-00992-2

Single-cell mass cytometry of microglia in major depressive disorder reveals a non-inflammatory phenotype with increased homeostatic marker expression
Cited by: 49
Author(s): Chotima Böttcher, Camila Fernández-Zapata, Gijsje Snijders, Stephan Schlickeiser, Marjolein Sneeboer, Désirée Kunkel, Lot de Witte, Josef Priller
Software Mentions: 2
Published: over 3 years ago

10.3390/diseases9030054

Machine Learning Consensus Clustering of Hospitalized Patients with Admission Hyponatremia
Cited by: 7
Author(s): Charat Thongprayoon, Panupong Hansrivijit, Michael A Mao, Pradeep Vaitla, Andrea G. Kattah, Pattharawin Pattharanitima, Saraschandra Vallabhajosyula, Voravech Nissaisorakarn, Tananchai Petnak, Mira T. Keddis, Stephen B. Erickson, John Dillon, Vesna D. Garovic, Wisit Cheungpasitporn
Software Mentions: 2
Published: almost 3 years ago

10.3390/ijms22031450

A Molecular Signature Determines the Prognostic and Therapeutic Subtype of Non-Muscle-Invasive Bladder Cancer Responsive to Intravesical Bacillus Calmette-Guérin Therapy
Cited by: 5
Author(s): Seon‐Kyu Kim, Seonghwan Park, Yeong Uk Kim, Young Joon Byun, Xuan‐Mei Piao, Pildu Jeong, Kyeong Ja Kim, Hee Youn Lee, Sung Pil Seo, Ho Won Kang, Dong-Won Kim, Yong‐June Kim, Sang Cheol Lee, Sung‐Kwon Moon, You‐Jin Jeon, Wun-Jae Kim, Seok Joong Yun
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22031474

Analysis of m6A RNA Methylation-Related Genes in Liver Hepatocellular Carcinoma and Their Correlation with Survival
Cited by: 31
Author(s): Yong Li, Dandan Qi, Baoli Zhu, Xin Ye
Software Mentions: 2
Published: over 3 years ago

10.1002/cam4.3291

Genome‐wide DNA methylome analysis reveals methylation subtypes with different clinical outcomes for acute myeloid leukemia patients
Cited by: 4
Author(s): Haiyan Gao, Xin He, Qiang Li, Ying Wang, Yao Tian, Xi Chen, Jinghua Wang, Yan Guo, Wei Wang, Xiaoyun Li
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12935-021-02048-x

Prognostic value of tumor immune cell infiltration patterns in colon adenocarcinoma based on systematic bioinformatics analysis
Cited by: 3
Author(s): Hao Xu, Qianhui Xu, Lu Yin
Software Mentions: 2
Published: almost 3 years ago

10.3390/ijms22042134

Expression and Prognostic Characteristics of m6A RNA Methylation Regulators in Colon Cancer
Cited by: 7
Author(s): Liting Huang, Jie Zhu, Weikaixin Kong, Peifeng Li, Sujie Zhu
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/6649412

Analysis of Immune Gene Expression Subtypes Reveals Osteosarcoma Immune Heterogeneity
Cited by: 5
Author(s): Ben Wan, Renxian Wang, Jing‐Jun Nie, Yuyang Sun, Bowen Zhang, Weifeng Liu, Dafu Chen
Software Mentions: 2
Published: over 3 years ago

10.18632/aging.102099

Better prognostic determination and feature characterization of cutaneous melanoma through integrative genomic analysis
Cited by: 8
Author(s): Xia Li, Yunpeng Cai
Software Mentions: 2
Published: almost 5 years ago

10.3389/fgene.2018.00108

Identification and Validation of a Diagnostic and Prognostic Multi-Gene Biomarker Panel for Pancreatic Ductal Adenocarcinoma
Cited by: 41
Author(s): Hagen Klett, Hannah Fuellgraf, Ella Levit‐Zerdoun, Saskia Hussung, Silke Kowar, Simon Küsters, Peter Bronsert, Martin Werner, Uwe A. Wittel, Ralph Fritsch, Hauke Busch, Melanie Boerries
Software Mentions: 2
Published: about 6 years ago

10.1210/clinem/dgaa449

The Immune Profile of Pituitary Adenomas and a Novel Immune Classification for Predicting Immunotherapy Responsiveness
Cited by: 25
Author(s): Zihao Wang, Xiaopeng Guo, Lu Gao, Kan Deng, Wei Lian, Xinjie Bao, Ming Feng, Lian Duan, Huijuan Zhu, Bing Xing
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00432-018-2694-5

FOXM1 predicts disease progression in non-muscle invasive bladder cancer
Cited by: 14
Author(s): Sébastien Rinaldetti, Ralph M. Wirtz, Thomas Worst, Arndt Hartmann, Johannes Breyer, Lars Dyrskjøt, Philipp Erben
Software Mentions: 1
Published: almost 6 years ago

10.7150/jca.55140

Malignant Evaluation and Clinical Prognostic Values of M6A RNA Methylation Regulators in Prostate Cancer
Cited by: 7
Author(s): Qijie Zhang, Jiaochen Luan, Lebin Song, Xiao‐Hong Wei, Jun Xia, Ninghong Song
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2020.00020

Co-occurrence and Mutual Exclusivity Analysis of DNA Methylation Reveals Distinct Subtypes in Multiple Cancers
Cited by: 14
Author(s): Wubin Ding, Guoshuang Feng, Yige Hu, Geng Chen, Tieliu Shi
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.01435

The Effect of m6A Methylation Regulatory Factors on the Malignant Progression and Clinical Prognosis of Hepatocellular Carcinoma
Cited by: 16
Author(s): Zhongwei Zhao, Lili Yang, Shiji Fang, Zheng Lu, Fazong Wu, Weiqian Chen, Jingjing Shen, Minjiang Chen, Jiansong Ji
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.23315

Clinical and molecular features of innate and acquired resistance to anti-PD-1/PD-L1 therapy in lung cancer
Cited by: 22
Author(s): Shalin Shah, Kevin Wood, Brian Labadie, Brian Won, Ryan J. Brisson, Theodore Karrison, Thomas A. Hensing, Mark Kozloff, Riyue Bao, Jyoti D. Patel, Jason J. Luke
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12102811

A Machine-Learning Tool Concurrently Models Single Omics and Phenome Data for Functional Subtyping and Personalized Cancer Medicine
Cited by: 0
Author(s): Gift Nyamundanda, Katherine Eason, Justin Guinney, Christopher J. Lord, Anguraj Sadanandam
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-019-0655-8

Identification of biomarkers and drug repurposing candidates based on an immune-, inflammation- and membranous glomerulonephritis-associated triplets network for membranous glomerulonephritis
Cited by: 4
Author(s): Chengwei Zhang, Lei Leng, Zhaozheng Li, Yao Zhao, Jundong Jiao
Software Mentions: 1
Published: over 4 years ago

10.1007/s00401-013-1095-8

Mutations in SETD2 and genes affecting histone H3K36 methylation target hemispheric high-grade gliomas
Cited by: 235
Author(s): Adam M. Fontebasso, Jeremy Schwartzentruber, Dong Anh Khuong-Quang, Xiao Yang Liu, Dominik Sturm, Andrey Korshunov, David Jones, Hendrik Witt, Marcel Kool, Steffen Albrecht, Adam Fleming, Djihad Hadjadj, Stephan Busche, Pierre Lepage, Alexandre Montpetit, Alfredo Staffa, Noha Gerges, Magdalena Zakrzewska, Krzysztof Zakrzewski, Paweł P. Liberski, Péter Hauser, Miklós Garami, Álmos Klekner, László Bognár, Gelareh Zadeh, Damien Faury, Stefan M. Pfister, Nada Jabado, Jacek Majewski
Software Mentions: 1
Published: over 11 years ago

10.1080/07853890.2021.1912385

The intra-class heterogeneity of immunophenotyping and immune landscape in oesophageal cancer and clinical implications
Cited by: 1
Author(s): Yujie Xie, Xiaoshun Shi, Ying Chen, Bomeng Wu, Xiaolin Gong, Wei-Cheng Lu, Wanli Lin
Software Mentions: 1
Published: over 3 years ago

10.1186/s12920-017-0256-3

Revealing cancer subtypes with higher-order correlations applied to imaging and omics data
Cited by: 9
Author(s): Kiley Graim, Tiffany Ting Liu, Achal S. Achrol, Evan O. Paull, Yulia Newton, Steven D. Chang, Griffith R. Harsh, Sergio Cordero, Daniel L. Rubin, Joshua M. Stuart
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2020.00522

Gene Signature and Identification of Clinical Trait-Related m6 A Regulators in Pancreatic Cancer
Cited by: 26
Author(s): Jie Hou, Zhan Wang, Hong Li, Hongzhi Zhang, Lan Luo
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/4354759

Patterns of Circadian Variation in 24-Hour Ambulatory Blood Pressure, Heart Rate, and Sympathetic Tone Correlate with Cardiovascular Disease Risk: A Cluster Analysis
Cited by: 5
Author(s): Myung Han Hyun, Jun Hyuk Kang, Sunghwan Kim, Jin Oh Na, Cheol Ung Choi, Jin Won Kim, Eung Ju Kim, Byoung Geol Choi, Chang Gyu Park, Eun-Mi Lee, Hong Seog Seo
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2020.00900

Genetic Alterations and Transcriptional Expression of m6A RNA Methylation Regulators Drive a Malignant Phenotype and Have Clinical Prognostic Impact in Hepatocellular Carcinoma
Cited by: 10
Author(s): Gui‐Qi Zhu, Lei Yu, Yujie Zhou, Jun-Xian Du, Shuangshuang Dong, Yiming Wu, Ying‐Hong Shi, Jian Zhou, Jia Fan
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2020.611191

RNA m6A Methylation Regulators Subclassify Luminal Subtype in Breast Cancer
Cited by: 9
Author(s): Lin Yang, Shuang‐Ling Wu, Chunhui Ma, Shuhui Song, Feng Jin, Yamei Niu, Wei‐Min Tong
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.602485

The Identification of Critical m6A RNA Methylation Regulators as Malignant Prognosis Factors in Prostate Adenocarcinoma
Cited by: 19
Author(s): Jiaju Xu, Yuenan Liu, Jingchong Liu, Tianbo Xu, Gong Cheng, Yanhong Shou, Junwei Tong, Lilong Liu, Lijie Zhou, Wen Xiao, Xiong Zhang, Chunrong Yuan, Zhixian Chen, Di Liu, Hongmei Yang, Huageng Liang, Ke Chen, Xiaoping Zhang
Software Mentions: 1
Published: over 3 years ago

10.1080/21655979.2020.1787764

The Cancer Genome Atlas (TCGA) based m<sup>6</sup>A methylation-related genes predict prognosis in hepatocellular carcinoma
Cited by: 50
Author(s): Jun Li, Guili Sun, Shang‐Ling Pan, Mengbin Qin, Rong Ouyang, Zhongzhuan Li, Jiean Huang
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.669750

Comprehensive Analysis of PD-L1 Expression, Immune Infiltrates, and m6A RNA Methylation Regulators in Esophageal Squamous Cell Carcinoma
Cited by: 40
Author(s): Wei Guo, Fengwei Tan, Qilin Huai, Zhen Wang, Fei Shao, Guochao Zhang, Zhenlin Yang, Renda Li, Qi Xue, Shugeng Gao, Jié He
Software Mentions: 1
Published: about 3 years ago

10.1186/1752-0509-7-S5-S7

Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma
Cited by: 15
Author(s): Qi Liu, Shilin Zhao, Pei Fang Su, Yu Shyr
Software Mentions: 1
Published: over 10 years ago

10.1186/s40364-020-0186-7

The mir-767-105 cluster: a crucial factor related to the poor prognosis of hepatocellular carcinoma
Cited by: 7
Author(s): Rui Tao, Siyi Xu, Shi Feng, Xueyou Zhang, Haitao Huang, Qi Ling
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.595746

Immune Subtyping in Latent Tuberculosis
Cited by: 6
Author(s): Ushashi Banerjee, Priyanka Baloni, Amit Singh, Nagasuma Chandra
Software Mentions: 1
Published: about 3 years ago

10.3389/fmolb.2021.645024

Tumor Microenvironment Characteristics of Pancreatic Cancer to Determine Prognosis and Immune-Related Gene Signatures
Cited by: 5
Author(s): Congjun Zhang, Jun Ding, Xiao Xu, Yangyang Liu, Wei Huang, Liangshan Da, Qingjie Ma, Shengyang Chen
Software Mentions: 1
Published: almost 3 years ago

10.18632/aging.104062

Molecular subtypes based on DNA promoter methylation predict prognosis in lung adenocarcinoma patients
Cited by: 5
Author(s): Shanping Shi, Mingjun Xu, Yang Xi
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-51616-9

Differential Treatments Based on Drug-induced Gene Expression Signatures and Longitudinal Systemic Lupus Erythematosus Stratification
Cited by: 22
Author(s): Daniel Toro-Domínguez, Raúl López-Domínguez, Adrián García Moreno, Juan Antonio Villatoro-García, Jordi Martorell-Marugán, Daniel Goldman, Michelle Petri, Daniel Wojdyla, Bernardo A. Pons-Estel, David Isenberg, Gabriela Morales-Montes de, María Isabel Trejo-Zambrano, Benjamín García González, Florencia Rosetti, Diana Gómez-Martı́n, Juanita Romero-Díaz, Pedro Carmona-Sáez, Marta E. Alarcón‐Riquelme
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.101829

m6A RNA methylation regulators contribute to malignant progression and have clinical prognostic impact in gliomas
Cited by: 156
Author(s): Rui‐Chao Chai, Fan Wu, Qixue Wang, Shu Zhang, Kenan Zhang, Yuqing Liu, Zheng Zhao, Tao Jiang, Yongzhi Wang, Chunsheng Kang
Software Mentions: 1
Published: over 5 years ago

Projects: bioconductor: ConsensusClusterPlus

Papers Mentioning ConsensusClusterPlus 313