Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: ChAMP

https://packages.ecosyste.ms/registries/bioconductor.org/packages/ChAMP

Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
1 version
Latest release: about 1 year ago
1 dependent package
109,414 downloads total

Papers Mentioning ChAMP 208

Discovery of Molecular DNA Methylation-Based Biomarkers through Genome-Wide Analysis of Response Patterns to BCG for Bladder Cancer
Cited by: 10
Author(s): Dafina Ilijazi, Walter Pulverer, Iris E Ertl, Ursula Lemberger, Shoji Kimura, Mohammad Abufaraj, David D’Andrea, Benjamin Pradère, Andreas Bruchbacher, Arndt Graf, Francesco Soria, Martin Susani, Andrea Haitel, Luca Molinaro, Armin Pycha, Evi Comploj, Stephan Pabinger, Andreas Weinhäusel, Gerda Egger, Shahrokh F. Shariat, Melanie R. Hassler
Software Mentions: 1
Published: over 4 years ago

10.1186/s13073-016-0361-5

Genome-wide methylation profiling of ovarian cancer patient-derived xenografts treated with the demethylating agent decitabine identifies novel epigenetically regulated genes and pathways
Cited by: 30
Author(s): Tushar Tomar, Steven de Jong, Nicolette G. Alkema, Rieks L Hoekman, Gert Jan Meersma, Harry G. Klip, Ate Gj van der Zee, G. Bea A. Wisman
Software Mentions: 1
Published: about 8 years ago

10.3390/epigenomes5010006

Ultra-Low DNA Input into Whole Genome Methylation Assays and Detection of Oncogenic Methylation and Copy Number Variants in Circulating Tumour DNA
Cited by: 7
Author(s): Celina M. Whalley, Karl Payne, Enric Domingo, A. Blake, Susan D. Richman, Jill Brooks, Nikolaos Batis, Rachel Spruce, Hisham Mehanna, Paul Nankivell, Andrew D Beggs
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12881-018-0542-8

Altered DNA methylation in liver and adipose tissues derived from individuals with obesity and type 2 diabetes
Cited by: 30
Author(s): Francisco Barajas‐Olmos, Federico Centeno-Cruz, Carlos Zerrweck, Iván Imaz-Rosshandler, Angélica Martínez‐Hernández, Emilio J. Córdova, Claudia Rangel‐Escareño, Faustino Gálvez, Armando Castillo, Hernán Maydón, Francisco Ramos Campos, Diana Gabriela Maldonado-Pintado
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13040706

Melanotic Neuroectodermal Tumor of Infancy (MNTI) and Pineal Anlage Tumor (PAT) Harbor A Medulloblastoma Signature by DNA Methylation Profiling
Cited by: 8
Author(s): Oscar Lopez‐Nunez, Rita Alaggio, Ivy John, Andrea Ciolfi, Lucia Pedace, Angela Mastronuzzi, Francesca Gianno, Felice Giangaspero, Sabrina Rossi, Vittoria Donofrio, Giuseppe Cinalli, Lea F. Surrey, Marco Tartaglia, Franco Locatelli, Evelina Miele
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jcyt.2020.06.001

Induced pluripotent stem cells derived from the developing striatum as a potential donor source for cell replacement therapy for Huntington disease
Cited by: 10
Author(s): Narawadee Choompoo, Oliver Bartley, Sophie Victoria Precious, Ngoc-Nga Vinh, Christian Schnell, A. Denise R. Garcia, Victoria H. Roberton, N. M. Williams, Paul J. Kemp, Claire Kelly, Anne Elizabeth Rosser
Software Mentions: 1
Published: almost 4 years ago

10.1038/oncsis.2017.88

DNA methylation signal has a major role in the response of human breast cancer cells to the microenvironment
Cited by: 24
Author(s): Pauline Mathot, Mélodie Grandin, Guillaume Devailly, Frédérique Souazé, Vincent Cahais, Sebastián Morán, Mario Campone, Zdenko Herceg, Manel Esteller, Philippe Juin, Patrick Mehlen, Robert Dante
Software Mentions: 1
Published: about 7 years ago

10.3389/fonc.2020.535449

KDM5c Promotes Colon Cancer Cell Proliferation Through the FBXW7-c-Jun Regulatory Axis
Cited by: 15
Author(s): Huiyun Lin, Nina Ma, Lei Zhao, Guowei Yang, Bangwei Cao
Software Mentions: 1
Published: about 4 years ago