bioconductor: ChAMP | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0171694

An integrative study on the impact of highly differentially methylated genes on expression and cancer etiology
Cited by: 2
Author(s): Buğra Özer, Uğur Sezerman
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers11111650

The Role of Aberrant DNA Methylation in Misregulation of Gene Expression in Gonadotroph Nonfunctioning Pituitary Tumors
Cited by: 10
Author(s): Paulina Kober, Joanna Boresowicz, Natalia Rusetska, Maria Maksymowicz, Agnieszka Paziewska, Michalina Dąbrowska, Jacek Kunicki, Wiesław Bonicki, Jerzy Ostrowski, Janusz A. Siedlecki, Mateusz Bujko
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13148-020-00847-z

The signature of HBV-related liver disease in peripheral blood mononuclear cell DNA methylation
Cited by: 14
Author(s): Kang Li, Ling Qin, Sanjie Jiang, Ang Li, Chi Zhang, Guihai Liu, Jianping Sun, Haolin Sun, Yan Zhao, Ning Li, Yonghong Zhang
Software Mentions: 3
Published: over 4 years ago

10.1186/s13148-020-0822-y

Epigenetic age acceleration of cervical squamous cell carcinoma converged to human papillomavirus 16/18 expression, immunoactivation, and favourable prognosis
Cited by: 13
Author(s): Xiaofan Lu, Yu Jie Zhou, Jialin Meng, Liyun Jiang, Jun Gao, Xiaohu Fan, Yanfeng Chen, Changhong Yu, Yang Wang, Bing Zhang, Hangyu Yan, Fangrong Yan
Software Mentions: 3
Published: over 4 years ago

10.1186/s13148-020-00984-5

Longitudinal data in peripheral blood confirm that PM20D1 is a quantitative trait locus (QTL) for Alzheimer’s disease and implicate its dynamic role in disease progression
Cited by: 19
Author(s): Q Wang, Yinghua Chen, Benjamin Readhead, Kewei Chen, Yi Su, Eric M. Reiman, Joel T. Dudley
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13148-018-0487-y

A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples
Cited by: 41
Author(s): María Gallardo-Gómez, Sebastián Morán, Marı́a Páez de la Cadena, Vicenta S. Martínez-Zorzano, Francisco Javier Rodrı́guez-Berrocal, Mar Rodríguez-Girondo, Manel Esteller, Joaquín Cubiella, Luís Bujanda, Antoni Castells, Francesc Balaguer, Rodrigo Jover, Loretta De Chiara
Software Mentions: 3
Published: over 6 years ago

10.1186/s13148-021-01121-6

Methylation status of genes escaping from X-chromosome inactivation in patients with X-chromosome rearrangements
Cited by: 1
Author(s): Sayaka Kawashima, Atsushi Hattori, Erina Suzuki, Kazuo Matsubara, Machiko Toki, Rika Kosaki, Yukihiro Hasegawa, Kazuhiko Nakabayashi, Maki Fukami, Masayo Kagami
Software Mentions: 3
Published: about 3 years ago

10.1186/s13148-016-0235-0

Genome-scale methylation assessment did not identify prognostic biomarkers in oral tongue carcinomas
Cited by: 7
Author(s): Annette Lim, Nicholas C. Wong, Ruth Pidsley, Elena Zotenko, June Corry, Alexander Dobrovic, Susan J. Clark, Danny Rischin, Benjamin Solomon
Software Mentions: 3
Published: about 8 years ago

10.1155/2021/6697848

Identification of Molecular Regulatory Features and Markers for Acute Type A Aortic Dissection
Cited by: 5
Author(s): Rui Li, Guochao Zhang, Shaomin Yan, Lichao Sun, Guoqiang Zhang
Software Mentions: 3
Published: over 3 years ago

10.1002/2211-5463.13018

Genome‐wide DNA methylation analysis of Hashimoto's thyroiditis during pregnancy
Cited by: 2
Author(s): Wenqian Cai, Wenlei Fan, Xi‐Jiang Hu
Software Mentions: 3
Published: almost 4 years ago

10.3389/fcell.2020.572628

DNA Methylation-Based Panel Predicts Survival of Patients With Clear Cell Renal Cell Carcinoma and Its Correlations With Genomic Metrics and Tumor Immune Cell Infiltration
Cited by: 4
Author(s): Xiaoping Li, Lingao Ju, Chen Chen, Tongzu Liu, Sheng Li, Xinghuan Wang
Software Mentions: 3
Published: almost 4 years ago

10.3389/fgene.2020.00301

Genome-Wide Analysis of Methylation-Driven Genes and Identification of an Eight-Gene Panel for Prognosis Prediction in Breast Cancer
Cited by: 12
Author(s): Yanshen Kuang, Ying Wang, Wanli Zhai, Xuning Wang, Bingdong Zhang, Maolin Xu, Shaohua Guo, Mu Ke, Baoqing Jia, Hongyi Liu
Software Mentions: 3
Published: over 4 years ago

10.3390/genes12020178

Integrated Analysis of Methylomic and Transcriptomic Data to Identify Potential Diagnostic Biomarkers for Major Depressive Disorder
Cited by: 4
Author(s): Yinping Xie, Ling Xiao, Lijuan Chen, Yage Zheng, Caixia Zhang, Gaohua Wang
Software Mentions: 3
Published: over 3 years ago

10.3390/genes12091433

Environmental Influences Measured by Epigenetic Clock and Vulnerability Components at Birth Impact Clinical ASD Heterogeneity
Cited by: 3
Author(s): Viviane Neri de Souza Reis, Ana Carolina Tahira, Vinícius Daguano Gastaldi, Paula Mari, Joana Portolese, Ana Cecília Feio dos Santos, Bianca Cristina Garcia Lisbôa, Jair J. Mari, Sheila C. Caetano, Décio Brunoni, Daniela Bordini, Cristinane Silvestre de Paula, Ricardo Zorzetto Nicoliello Vêncio, John Quackenbush, Helena Brentani
Software Mentions: 3
Published: almost 3 years ago

10.3390/genes12091408

Years of Schooling Could Reduce Epigenetic Aging: A Study of a Mexican Cohort
Cited by: 1
Author(s): Juan Carlos Gómez-Verján, Marcelino Esparza-Aguilar, Verónica Martín-Martín, Cecilia Salazar-Pérez, Cinthya Cadena-Trejo, Luis Miguel Gutiérrez‐Robledo, José Jaime Martínez‐Magaña, Humberto Nicolini, Pedro Arroyo
Software Mentions: 3
Published: almost 3 years ago

10.1186/s13059-015-0600-x

A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies
Cited by: 260
Author(s): Benjamin Lehne, Alexander W. Drong, Marie Loh, Weihua Zhang, William R. Scott, Sian-Tsung Tan, Uzma Afzal, James A. Scott, Marjo‐Riitta Järvelin, Paul Elliott, Mark I. McCarthy, Jaspal S. Kooner, John C. Chambers
Software Mentions: 3
Published: over 9 years ago

10.1093/ibd/izy119

Discovery and Validation of Methylation Biomarkers for Ulcerative Colitis Associated Neoplasia
Cited by: 8
Author(s): Andrew D Beggs, Jonathan James, Germaine Caldwell, Toby Prout, Mark Dilworth, Philippe Taniere, Tariq Iqbal, Dean Morton, Glenn Matthews
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-78809-x

Epigenetic differences at the HTR2A locus in progressive multiple sclerosis patients
Cited by: 8
Author(s): Vicki E. Maltby, Rodney Arthur Lea, Sean M Burnard, Alexandre Xavier, Thao Van Cao, Nicole White, Kira Groen, Katherine Sanders, Rebecca Seeto, Samara Bray, Melissa Gresle, Louise Laverick, Helmut Butzkueven, Rodney J. Scott, Jeannette Lechner‐Scott
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-021-83016-3

Identification of epigenetic memory candidates associated with gestational age at birth through analysis of methylome and transcriptional data
Cited by: 6
Author(s): Kohei Kashima, Tomoko Kawai, Riki Nishimura, Yuh Shiwa, Kevin Y. Urayama, Hiromi Kamura, Kazue Takeda, Saki Aoto, Atsushi Ito, Kazuo Matsubara, Takeshi Nagamatsu, Tomoyuki Fujii, Isaku Omori, Mitsumasa Shimizu, Hironobu Hyodo, Koji Kugu, Kenji Matsumoto, Atsushi Shimizu, Akira Oka, Masashi Mizuguchi, Kazuhiko Nakabayashi, Kenichiro Hata, Naoto Takahashi
Software Mentions: 3
Published: over 3 years ago

10.1155/2018/8608327

Transcriptome and DNA Methylome Dynamics during Triclosan-Induced Cardiomyocyte Differentiation Toxicity
Cited by: 7
Author(s): Guizhen Du, Mingming Yu, Lingling Wang, Wu Hu, Song Lee, Chuncheng Lu, Xinru Wang
Software Mentions: 3
Published: almost 6 years ago

10.1155/2018/4390789

A DNA-Methylated Sight on Autoimmune Inflammation Network across RA, pSS, and SLE
Cited by: 9
Author(s): Xingqiang Wang, Dongyun Lei, Jie Ding, Shuang Liu, Tao Li, Fan Zhang, Jiangyun Peng, Jian Xu
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.41356

Chemical modulation of transcriptionally enriched signaling pathways to optimize the conversion of fibroblasts into neurons
Cited by: 34
Author(s): Joseph R. Herdy, Simon Schäfer, Yongsung Kim, Zoya Ansari, Dina Zangwill, Manching Ku, Apuã C.M. Paquola, Hyungjun Lee, Jérôme Mertens, Fred H. Gage
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.14826

Stem cell cultures derived from pediatric brain tumors accurately model the originating tumors
Cited by: 30
Author(s): Anna Wenger, Susanna C. Larsson, Anna Danielsson, Kirstine Juul Elbæk, Petronella Kettunen, Magnus Tisell, Magnus Sabel, Birgitta Lannering, Claes Nordborg, Elizabeth Schepke, Helena Carén
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.16178

Survival differences of CIMP subtypes integrated with CNA information in human breast cancer
Cited by: 3
Author(s): Huihan Wang, Weili Yan, Shumei Zhang, Yue Gu, Yihan Wang, Yanjun Wei, Hongbo Liu, Fang Wang, Qiong Wu, Yan Zhang
Software Mentions: 3
Published: over 7 years ago

10.3390/nu13051413

Individuals Diagnosed with Binge-Eating Disorder Have DNA Hypomethylated Sites in Genes of the Metabolic System: A Pilot Study
Cited by: 4
Author(s): Mariana Lizbeth Rodríguez-López, José Jaime Martínez‐Magaña, David Ruiz‐Ramos, Ana Rosa Sepúlveda García, Laura González, Carlos Alfonso Tóvilla-Zárate, Emmanuel Sarmiento, Isela Esther Juárez‐Rojop, Humberto Nicolini, Thelma Beatriz González‐Castro, Alma Delia Genis‐Mendoza
Software Mentions: 3
Published: over 3 years ago

10.1002/cjp2.195

Chromosome 2q gain and epigenetic silencing of <scp>GATA3</scp> in microglandular adenosis of the breast
Cited by: 3
Author(s): Martin Radner, Jana Lisa van Luttikhuizen, Stephan Bartels, Janin Bublitz, Isabel Grote, Luisa Rieger, Henriette Christgen, Helge Stark, Christopher Werlein, Marcel Lafos, Doris Steinemann, Ulrich Lehmann, Matthias Christgen, Hans Kreipe
Software Mentions: 2
Published: over 3 years ago

10.3389/fphys.2019.00932

Personalized Epigenome Remodeling Under Biochemical and Psychological Changes During Long-Term Isolation Environment
Cited by: 10
Author(s): Feng Liang, Ke Lv, Yue Wang, Yanhong Yuan, Lu Liang, Qiang Feng, Xiaolu Jing, Honghui Wang, Changning Liu, Simon Rayner, Shukuan Ling, Hailong Chen, Wan Yue, Wenxing Zhou, Li He, Bin Wu, Lei Qu, Shanguang Chen, Jianghui Xiong, Yinghui Li
Software Mentions: 2
Published: about 5 years ago

10.1186/s13148-019-0686-1

Smoking-associated AHRR demethylation in cord blood DNA: impact of CD235a+ nucleated red blood cells
Cited by: 15
Author(s): Matthew A. Bergens, Gary S. Pittman, Isabel J. Thompson, Michelle R. Campbell, Xuting Wang, Cathrine Hoyo, Douglas A. Bell
Software Mentions: 2
Published: about 5 years ago

10.1186/s13148-020-00967-6

Epigenetic profiling of Italian patients identified methylation sites associated with hereditary transthyretin amyloidosis
Cited by: 9
Author(s): Antonella De Lillo, Gita A. Pathak, Flavio De Angelis, Marco Di Girolamo, Marco Luigetti, Mario Sabatelli, Federico Perfetto, Sabrina Frusconi, Dario Manfellotto, Maria Fuciarelli, Renato Polimanti
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpsyt.2020.588229

Genome-Wide DNA Methylation Analysis in Male Methamphetamine Users With Different Addiction Qualities
Cited by: 2
Author(s): Liang Liu, Tao Luo, Huixi Dong, Chenxi Zhang, Tieqiao Liu, Xiangyang Zhang, Wei Hao
Software Mentions: 2
Published: almost 4 years ago

10.18632/oncotarget.8544

Comprehensive analysis of genome-wide DNA methylation across human polycystic ovary syndrome ovary granulosa cell
Cited by: 42
Author(s): Jie Xu, Xiaojing Bao, Zhaoliang Peng, Linlin Wang, Linqing Du, Wenbin Niu, Yingpu Sun
Software Mentions: 2
Published: over 8 years ago

10.1186/s13059-014-0569-x

An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after gastric bypass and weight loss
Cited by: 188
Author(s): Miles C. Benton, Alice Johnstone, David Eccles, Brennan Harmon, Mark Hayes, Rodney Arthur Lea, Lyn R. Griffiths, Eric P. Hoffman, Richard S. Stubbs, Donia Macartney-Coxson
Software Mentions: 2
Published: over 9 years ago

10.1186/s13148-021-01130-5

Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers
Cited by: 14
Author(s): David W. Chan, Wai Lam, Fushun Chen, Mingo M. H. Yung, Yau-Sang Chan, Wai-Sun Chan, Fengjiao He, Stephanie S. Liu, Ki Chan, Benjamin Li, Hextan Ys Ngan
Software Mentions: 2
Published: about 3 years ago

10.1186/s13148-016-0303-5

UroMark—a urinary biomarker assay for the detection of bladder cancer
Cited by: 75
Author(s): Andrew Feber, Pawan Dhami, Dong Liang, Patricia de Winter, Wei Shen Tan, Mónica Martínez‐Fernández, Dirk S. Paul, Antony Hynes-Allen, Sheida Rezaee, Pratik Gurung, Simon Rodney, Ahmed Mehmood, Felipe Villacampa, Federico de la Rosa, Charles Jameson, Kar Keung Cheng, Maurice P. Zeegers, Richard T. Bryan, Nicholas D. James, Jesús M. Paramio, Alex Freeman, Stephan Beck, John D. Kelly
Software Mentions: 2
Published: over 7 years ago

10.1186/s13148-021-01010-y

Genome-wide DNA methylation profiling is able to identify prefibrotic PMF cases at risk for progression to myelofibrosis
Cited by: 0
Author(s): Ulrich Lehmann, Helge Stark, Stephan Bartels, Jérôme Schlué, Guntram Büsche, Hans Kreipe
Software Mentions: 2
Published: over 3 years ago

10.1186/s13148-020-00907-4

Genome-wide methylation patterns predict clinical benefit of immunotherapy in lung cancer
Cited by: 45
Author(s): Jeong Yeon Kim, Jung Kyoon Choi, Hyunchul Jung
Software Mentions: 2
Published: about 4 years ago

10.3390/cells9081864

S-Adenosylmethionine Treatment of Colorectal Cancer Cell Lines Alters DNA Methylation, DNA Repair and Tumor Progression-Related Gene Expression
Cited by: 15
Author(s): Sára Zsigrai, Alexandra Kalmár, Zsófia Brigitta Nagy, Barbara Kinga Barták, Gábor Valcz, Krisztina Andrea Szigeti, Orsolya Galamb, Titanilla Dankó, Anna Sebestyén, Gábor Barna, V. Szabó, Orsolya Pipek, Anna Medgyes-Horváth, István Csabai, Zsolt Tulassay, Péter Igaz, István Takács, Béla Molnár
Software Mentions: 2
Published: about 4 years ago

10.1186/s13578-019-0278-y

Regional methylome profiling reveals dynamic epigenetic heterogeneity and convergent hypomethylation of stem cell quiescence-associated genes in breast cancer following neoadjuvant chemotherapy
Cited by: 13
Author(s): Yan Luo, Juan Huang, Yi Tang, Xitu Luo, Lingxia Ge, Xiujie Sheng, Xiaofang Sun, Yaoyong Chen, Detu Zhu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0222188

Genome-wide analysis of DNA methylation profile identifies differentially methylated loci associated with human intervertebral disc degeneration
Cited by: 23
Author(s): Akihiro Ikuno, Koji Akeda, Shin‐ichiro Takebayashi, Motomu Shimaoka, Katsuhiko Okumura, Akihiro Sudo
Software Mentions: 2
Published: almost 5 years ago

10.3390/nu13093210

Association Study among Comethylation Modules, Genetic Polymorphisms and Clinical Features in Mexican Teenagers with Eating Disorders: Preliminary Results
Cited by: 1
Author(s): Germán Alberto Nolasco-Rosales, José Jaime Martínez‐Magaña, Isela Esther Juárez‐Rojop, Thelma Beatríz González-Castro, Carlos Alfonso Tóvilla-Zárate, Ana Rosa Sepúlveda García, Emmanuel Sarmiento, David Ruiz‐Ramos, Alma Delia Genis‐Mendoza, Humberto Nicolini
Software Mentions: 2
Published: almost 3 years ago

10.1371/journal.pone.0212043

Epigenome-wide analysis of sperm cells identifies IL22 as a possible germ line risk locus for psoriatic arthritis
Cited by: 21
Author(s): Remy Pollock, Laila Zaman, Vinod Chandran, Dafna D. Gladman
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.14231

Predicting overall survival of patients with hepatocellular carcinoma using a three‐category method based on DNA methylation and machine learning
Cited by: 26
Author(s): Rui‐Zhao Dong, Xuan Yang, Xinyu Zhang, Ping Gao, Ai–Wu Ke, Hui‐Chuan Sun, Jian Zhou, Jia Fan, Jia‐Bin Cai, Guo‐Ming Shi
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.15642

S‐adenosylmethionine in combination with decitabine shows enhanced anti‐cancer effects in repressing breast cancer growth and metastasis
Cited by: 18
Author(s): Niaz Mahmood, Ani Arakelian, David Cheishvili, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 2
Published: about 4 years ago

10.3390/ph14020118

Integrative Genomic–Epigenomic Analysis of Clozapine-Treated Patients with Refractory Psychosis
Cited by: 6
Author(s): Yerye Gibrán Mayén-Lobo, José Jaime Martínez‐Magaña, Blanca Estela Pérez-Aldana, Alberto Ortega-Vázquez, Alma Delia Genis‐Mendoza, David José Dávila-Ortiz de Montellano, Ernesto Soto-Reyes, Humberto Nicolini, Marisol López-López, Nancy Monroy-Jaramillo
Software Mentions: 2
Published: over 3 years ago

10.1093/rheumatology/key101

Widespread epigenomic, transcriptomic and proteomic differences between hip osteophytic and articular chondrocytes in osteoarthritis
Cited by: 19
Author(s): Julia Steinberg, Brooks Ra, Lorraine Southam, Sahir Bhatnagar, Roumeliotis Ti, Konstantinos Hatzikotoulas, Eleni Zengini, Wilkinson Jm, Jyoti S. Choudhary, Andrew W. McCaskie, Eleftheria Zeggini
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.8196

DNA methylation profiling in recurrent miscarriage
Cited by: 3
Author(s): Li Pi, Zhaofeng Zhang, Yu Gu, Xinyue Wang, Jianmei Wang, Jianhua Xu, Junwei Liu, Xuan Zhang, Jing Du
Software Mentions: 2
Published: over 4 years ago

10.1038/srep14466

Multigenerational epigenetic inheritance in humans: DNA methylation changes associated with maternal exposure to lead can be transmitted to the grandchildren
Cited by: 122
Author(s): Arko Sen, N Ronald Heredia, Marie Claude Senut, Susan Land, Kurt Hollocher, Xiangyi Lu, Mary O. Dereski, Douglas M. Ruden
Software Mentions: 2
Published: almost 9 years ago

10.1155/2020/4612375

Association between APOBEC3H-Mediated Demethylation and Immune Landscape in Head and Neck Squamous Carcinoma
Cited by: 6
Author(s): Qin Liu, Yong Luo, Ruoyan Cao, Xue Pan, Xijuan Chen, Siyuan Zhang, Weilin Zhang, Jiaju Zhou, Bin Cheng, Xianyue Ren
Software Mentions: 2
Published: about 4 years ago

10.1186/s12920-018-0423-1

Personal Genome Project UK (PGP-UK): a research and citizen science hybrid project in support of personalized medicine
Cited by: 26
Author(s): Stephan Beck, Berner Am, Graham R. Bignell, Mike Bond, MJ Callanan, Olga Chervova, Lucía Conde, Manuel Corpas, Simone Ecker, Hannah R Elliott, SA Fioramonti, Adrienne M. Flanagan, R Gaentzsch, David Graham, D Gribbin, JA Guerra-Assuncao, Rifat Hamoudi, Harding, PL Harrison, Javier Herrero, Julia Hofmann, Elizabeth Jones, Shahbaz Khan, Jane Kaye, Peter G. Kerr, Emanuele Libertini, Leah Marks, L McCormack, Ismail Moghul, Nikolas Pontikos, Sharmini Rajanayagam, K Rana, M Semega-Janneh, Colin P. Smith, Lena Ström, S Umur, AP Webster, Liz Williams, K Wint, Wood Jn
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.21911

Dietary folate levels alter the kinetics and molecular mechanism of prostate cancer recurrence in the CWR22 model
Cited by: 11
Author(s): Hayley C. Affronti, Mark D. Long, Spencer R. Rosario, Bryan M. Gillard, Ellen Karasik, Christoph S. Boerlin, Anthony J. Pellerite, Barbara A. Foster, Kristopher Attwood, Роберто Пили, John H. Wilton, Moray J. Campbell, Dominic J. Smiraglia
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-91934-5

Differential methylation of G-protein coupled receptor signaling genes in gastrointestinal neuroendocrine tumors
Cited by: 5
Author(s): Seyoun Byun, Kajsa E. Affolter, Angela K. Snow, Karen Curtin, Austin R. Cannon, Lisa Cannon-Albright, Ramya Thota, Deborah W. Neklason
Software Mentions: 2
Published: about 3 years ago

10.1186/s12920-021-00966-3

Gene expression and DNA methylation analyses suggest that two immune related genes are prognostic factors of colorectal cancer
Cited by: 3
Author(s): Xiao-Liang Xing, Zhen Yao, Chaoqun Xing, Zhi Huang, Jing Peng, Yuanwu Liu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41398-019-0589-0

Integrated genome-wide methylation and expression analyses reveal functional predictors of response to antidepressants
Cited by: 30
Author(s): Chelsey Ju, Laura M. Fiori, Raoul Belzeaux, Jean-François Théroux, Gary Gang Chen, Zahia Aouabed, Pierre Blier, Faranak Farzan, Benício N. Frey, Peter Giacobbe, Raymond W. Lam, Francesco Leri, Glenda MacQueen, Roumen Milev, Daniel J. Müller, Sagar V. Parikh, Susan Rotzinger, Cláudio N. Soares, Rudolf Uher, Qingqin Li, Jane A. Foster, Sidney H. Kennedy, Gustavo Turecki
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12881-019-0767-1

HIF-1 transcription activity: HIF1A driven response in normoxia and in hypoxia
Cited by: 49
Author(s): Flora Cimmino, Marianna Avitabile, Vito Alessandro Lasorsa, Annalaura Montella, Lucia Pezone, Sueva Cantalupo, Feliciano Visconte, Maria Valeria Corrias, Achille Iolascon, Mario Capasso
Software Mentions: 2
Published: over 5 years ago

10.1002/path.5537

Drivers underpinning the malignant transformation of giant cell tumour of bone
Cited by: 19
Author(s): Matthew Fittall, Iben Lyskjær, Peter Ellery, Patrick Lombard, Jannat Ijaz, Anna Strobl, Dahmane Oukrif, Maxime Tarabichi, Martin Sill, Christian Koelsche, Gunhild Mechtersheimer, Jonas Demeulemeester, Roberto Tirabosco, Fernanda Amary, Peter J. Campbell, Stefan M. Pfister, David Jones, Nischalan Pillay, Peter Van Loo, Sam Behjati, Adrienne M. Flanagan
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-015-1915-4

The idiopathic preterm delivery methylation profile in umbilical cord blood DNA
Cited by: 35
Author(s): Febilla Fernando, Remco Keijser, Peter Henneman, Anne-Marie F. van der Kevie-Kersemaekers, Marcel M.A.M. Mannens, Joris A. M. van der Post, Gijs B. Afink, Carrie Ris‐Stalpers
Software Mentions: 2
Published: almost 9 years ago

10.3389/fcimb.2021.666143

Global CpG DNA Methylation Footprint in Kaposi’s Sarcoma
Cited by: 5
Author(s): Guy Journo, Amit Ahuja, David Dias‐Polak, Yonatan Eran, Reuven Bergman, Meir Shamay
Software Mentions: 2
Published: about 3 years ago

10.3389/fcell.2021.636291

Genome-Wide Differentially Methylated Region Analysis to Reveal Epigenetic Differences of Articular Cartilage in Kashin–Beck Disease and Osteoarthritis
Cited by: 7
Author(s): Yue Fan, Dehua Gao, Yingang Zhang, Jiaqiang Zhu, Feng Zhang, Lu Wang, Yan Wen, Xiong Guo, Shuang Sun
Software Mentions: 2
Published: over 3 years ago

10.1186/s13072-016-0060-x

Genome-wide methylation analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause random DNA demethylation in fragile X syndrome cells
Cited by: 22
Author(s): Elisabetta Tabolacci, Giorgia Mancano, Stella Lanni, Federica Palumbo, Martina Goracci, Fabrizio Ferrè, Manuela Helmer-Citterich, Giovanni Neri
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2021.587440

Transcriptome and Differential Methylation Integration Analysis Identified Important Differential Methylation Annotation Genes and Functional Epigenetic Modules Related to Vitiligo
Cited by: 11
Author(s): Yihuan Pu, Xuenuo Chen, Yangmei Chen, Lingzhao Zhang, Jiayi Chen, Yujie Zhang, Xinyi Shao
Software Mentions: 2
Published: over 3 years ago

10.3389/fmolb.2020.00118

A DNA Methylation-Based Panel for the Prognosis and Diagnosis of Patients With Breast Cancer and Its Mechanisms
Cited by: 11
Author(s): Xiaoping Li, Jian Hou, Chen Chen, Li Guan, He-xuan Hu, Sheng Li
Software Mentions: 2
Published: about 4 years ago

10.1111/jcmm.13680

<i><scp>HORMAD</scp>2</i> methylation‐mediated epigenetic regulation of gene expression in thyroid cancer
Cited by: 10
Author(s): Qiao Lin, Sen Hou, Feng Guan, Chenghe Lin
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms18030535

Hyper-Methylated Loci Persisting from Sessile Serrated Polyps to Serrated Cancers
Cited by: 14
Author(s): Angeline S. Andrew, John A. Baron, Lynn F. Butterly, Arief A. Suriawinata, Gregory J. Tsongalis, Christina M. Robinson, Christopher I. Amos
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20051173

Aberrant DOCK2, GRASP, HIF3A and PKFP Hypermethylation has Potential as a Prognostic Biomarker for Prostate Cancer
Cited by: 28
Author(s): Marianne Bjerre, Siri H. Strand, Maibritt Nørgaard, Helle Kristensen, Anne Ki Rasmussen, Martin M. Mortensen, Jacob Fredsøe, Peter Mouritzen, Benedicte Parm Ulhøi, Torben F. Ørntoft, Michael Borre, Karina D. Sørensen
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm10040560

Invasive and Noninvasive Nonfunctioning Gonadotroph Pituitary Tumors Differ in DNA Methylation Level of LINE-1 Repetitive Elements
Cited by: 3
Author(s): Natalia Rusetska, Paulina Kober, Sylwia Król, Joanna Boresowicz, Maria Maksymowicz, Jacek Kunicki, Wiesław Bonicki, Mateusz Bujko
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0166486

Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes
Cited by: 95
Author(s): Dan Su, Xuting Wang, Michelle R. Campbell, Devin K. Porter, Gary S. Pittman, Brian D. Bennett, Wenqiang Ma, Neal A. Englert, Christopher L. Crowl, Ryan C. Gimple, Kelly Adamski, Zhiqing Huang, Susan K. Murphy, Douglas A. Bell
Software Mentions: 1
Published: over 7 years ago

10.3389/fnmol.2018.00322

A DNA Methylation Signature of Addiction in T Cells and Its Reversal With DHEA Intervention
Cited by: 13
Author(s): Elad Lax, Gal Warhaftig, David Ohana, Rachel Maayan, Yael Delayahu, Paola Roska, Alexander M. Ponizovsky, Abraham Weizman, Gal Yadid, Moshe Szyf
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-018-4482-7

DNA methylation signatures of breast cancer in peripheral T-cells
Cited by: 29
Author(s): Surabhi Parashar, David Cheishvili, Niaz Mahmood, Ani Arakelian, Imrana Tanvir, Haseeb Ahmed Khan, Richard Kremer, Catalin Mihalcioiu, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-020-06951-w

The clinical significance of the T2-FLAIR mismatch sign in grade II and III gliomas: a population-based study
Cited by: 27
Author(s): Alba Corell, Sandra Ferreyra Vega, Nickoleta Hoefling, Louise Carstam, Anja Smits, Thomas Olsson Bontell, Isabella M. Björkman‐Burtscher, Helena Carén, Asgeir Store Jakola
Software Mentions: 1
Published: over 4 years ago

10.1038/srep12789

Systematically Prioritizing Functional Differentially Methylated Regions (fDMRs) by Integrating Multi-omics Data in Colorectal Cancer
Cited by: 6
Author(s): Huihui Fan, Hongying Zhao, Lin Pang, Ling Liu, Guanxiong Zhang, Fulong Yu, Tingting Liu, Chaohan Xu, Yun Xiao, Xia Li
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms22115484

Establishment and Characterization of a Cell Line (S-RMS1) Derived from an Infantile Spindle Cell Rhabdomyosarcoma with SRF-NCOA2 Fusion Transcript
Cited by: 3
Author(s): Marta Colletti, Angela Galardi, Evelina Miele, Virginia Di Paolo, Ida Russo, Cristiano De Stefanis, Rita De Vito, Martina Rinelli, Andrea Ciolfi, Biagio De Angelis, Angelica Zin, Alessandro Guffanti, María Cristina Digilio, Antonio Novelli, Rita Alaggio, Giuseppe Maria Milano, Angela Di Giannatale
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-08623-5

DNA methylation in demyelinated multiple sclerosis hippocampus
Cited by: 46
Author(s): Anthony M. Chomyk, Christina Volsko, Ajai K. Tripathi, Sadie A. Deckard, Bruce D. Trapp, Robert J. Fox, Ranjan Dutta
Software Mentions: 1
Published: about 7 years ago

10.1111/bpa.12875

Ependymoma relapse goes along with a relatively stable epigenome, but a severely altered tumor morphology
Cited by: 6
Author(s): Denise Yang, Till Holsten, Daniela Börnigen, Stephan Frank, Christian Mawrin, Markus Glatzel, Ulrich Schüller
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2020.524922

Thioguanine Induces Apoptosis in Triple-Negative Breast Cancer by Regulating PI3K–AKT Pathway
Cited by: 9
Author(s): Daoyu Zhang, Xinglan An, Qi Li, Xiaxia Man, Meiran Chu, Hao Li, Nan Zhang, Xiangpeng Dai, Hao Yu, Ziyi Li
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.620873

Epigenetic Regulation of Claudin-1 in the Development of Ovarian Cancer Recurrence and Drug Resistance
Cited by: 9
Author(s): Zachary R. Visco, Gregory Sfakianos, Carole Grenier, Marie-Helene Boudreau, Sabrina Simpson, Isabel V. Rodriguez, Regina S. Whitaker, Derek Y. Yao, Andrew Berchuck, Susan K. Murphy, Zhiqing Huang
Software Mentions: 1
Published: over 3 years ago

10.3389/fonc.2021.689833

Whole-Genome Methylation Study of Congenital Lung Malformations in Children
Cited by: 0
Author(s): Sara Patrizi, Federica Pederiva, Adamo Pio d’Adamo
Software Mentions: 1
Published: about 3 years ago

10.1038/s42003-020-01267-8

Comprehensive genetic analysis of pediatric germ cell tumors identifies potential drug targets
Cited by: 8
Author(s): Yasuo Kubota, Masafumi Seki, Tomoko Kawai, Tomoya Isobe, Misa Yoshida, Mutsuo Sekiguchi, Shunsuke Kimura, Kentaro Watanabe, Aiko Sato‐Otsubo, Kenichi Yoshida, Hiromichi Suzuki, Keisuke Kataoka, Yoichi Fujii, Yuichi Shiraishi, Kenichi Chiba, Hiroko Tanaka, Mitsuteru Hiwatari, Akira Oka, Yasuhide Hayashi, Satoru Miyano, Seishi Ogawa, Kenichiro Hata, Yukichi Tanaka, Junko Takita
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13148-017-0436-1

The signature of liver cancer in immune cells DNA methylation
Cited by: 47
Author(s): Yonghong Zhang, Sophie Petropoulos, Jinhua Liu, David Cheishvili, Rudy Zhou, Sergiy Dymov, Kang Li, Ning Li, Moshe Szyf
Software Mentions: 1
Published: over 6 years ago

10.1186/s13148-019-0652-y

Integrative analysis of DNA methylation in discordant twins unveils distinct architectures of systemic sclerosis subsets
Cited by: 27
Author(s): Paula S. Ramos, Kip D. Zimmerman, Sandra Haddad, Carl D. Langefeld, Thomas A. Medsger, Carol Feghali‐Bostwick
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-015-0094-0

DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer
Cited by: 47
Author(s): Kevin C. Johnson, Devin C. Koestler, Thomas Fleischer, Panpan Chen, Erik G. Jenson, Jonathan D. Marotti, Tracy Onega, Vessela N. Kristensen, Brock C. Christensen
Software Mentions: 1
Published: about 9 years ago

10.1155/2015/376423

DNA Methylation Levels of Melanoma Risk Genes Are Associated with Clinical Characteristics of Melanoma Patients
Cited by: 17
Author(s): Érica Sara Souza de Araújo, Dimitrius T. Pramio, André Yoshiaki Kashiwabara, Paula Comune Pennacchi, Silvya Stuchi Maria‐Engler, Maria Isabel Achatz, Antônio Hugo José Fróes Marques Campos, João Pedreira Duprat, Carla Rosenberg, Dirce Maria Carraro, Ana Cristina Victorino Krepischi
Software Mentions: 1
Published: over 9 years ago

10.1002/jor.23525

Effects of chronic cobalt and chromium exposure after metal-on-metal hip resurfacing: An epigenome-wide association pilot study
Cited by: 11
Author(s): Julia Steinberg, Karan M. Shah, Alison Gartland, Eleftheria Zeggini, J. Mark Wilkinson
Software Mentions: 1
Published: over 7 years ago

10.1016/j.envres.2020.109971

DNA methylation signature of passive smoke exposure is less pronounced than active smoking: The Understanding Society study
Cited by: 5
Author(s): Paige M. Hulls, Frank de Vocht, Yanchun Bao, Caroline L Relton, Richard M. Martin, Rebecca C Richmond
Software Mentions: 1
Published: almost 4 years ago

10.3389/fpsyt.2016.00035

DNA Methylation at the Neonatal State and at the Time of Diagnosis: Preliminary Support for an Association with the Estrogen Receptor 1, Gamma-Aminobutyric Acid B Receptor 1, and Myelin Oligodendrocyte Glycoprotein in Female Adolescent Patients with OCD
Cited by: 29
Author(s): Judith Becker Nissen, Christine Søholm Hansen, Anna Starnawska, Manuel Mattheisen, Anders D. Børglum, Henriette Nørmølle Buttenschøn, Mads V. Hollegaard
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2021.618803

Analysis of mRNA Expression and DNA Methylation Datasets According to the Genomic Distribution of CpG Sites in Osteoarthritis
Cited by: 4
Author(s): Yi De Peng, Xiongfeng Xu, Jiawei Yao, Bo Qiu
Software Mentions: 1
Published: over 3 years ago

10.1097/SLA.0000000000002658

Whole Genome Methylation Analysis of Nondysplastic Barrett Esophagus that Progresses to Invasive Cancer
Cited by: 13
Author(s): Mark Dilworth, Tom Nieto, Jo D Stockton, Celina M. Whalley, Louise Tee, Jonathan James, Fergus Noble, Tim Underwood, Michael Hallissey, Rahul Hejmadi, Nigel Trudgill, Olga Tucker, Andrew D Beggs
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-020-07078-8

DNA methylation signatures of Prostate Cancer in peripheral T-cells
Cited by: 16
Author(s): Surabhi Parashar, David Cheishvili, Niaz Mahmood, Ani Arakelian, Imrana Tanvir, Haseeb Ahmed Khan, Richard Kremer, Catalin Mihalcioiu, Moshe Szyf, Shafaat A. Rabbani
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.13442

Altered DNA methylation in neonates born large-for-gestational-age is associated with cardiometabolic risk in children
Cited by: 14
Author(s): Xian-Hua Lin, Dandan Wu, Ling Gao, Jun-yu Zhang, Haitian Pan, Hui Wang, Cheng Li, Zhang Ping, Mingxiao Guo, Yanting Wu, Ya‐Jing Tan, Li Jin, Xiangxian Ying, Juxue Li, Jian‐Zhong Sheng, He‐Feng Huang
Software Mentions: 1
Published: almost 8 years ago

10.1002/gcc.22837

Genome‐wide characterization of 5‐hydoxymethylcytosine in melanoma reveals major differences with nevus
Cited by: 6
Author(s): Catarina Salgado, Jan Oosting, Bart Janssen, Rajiv Kumar, Nelleke A. Gruis, Remco van Doorn
Software Mentions: 1
Published: over 4 years ago

10.1186/s13148-020-00949-8

Genome-wide methylation analysis in Silver–Russell syndrome, Temple syndrome, and Prader–Willi syndrome
Cited by: 7
Author(s): Kaori Hara-Isono, Kazuo Matsubara, Tomoko Fuke, Kazuki Yamazawa, Kazuhito Satou, Nobuyuki Murakami, Shinji Saitoh, Kazuhiko Nakabayashi, Kenichiro Hata, Tsutomu Ogata, Maki Fukami, Masayo Kagami
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-89128-0

Bortezomib induces methylation changes in neuroblastoma cells that appear to play a significant role in resistance development to this compound
Cited by: 5
Author(s): Karolina Łuczkowska, K Sokołowska, Olga Taryma-Leśniak, Krzysztof Pastuszak, Anna Supernat, Jonas Bybjerg‐Grauholm, Lise Lotte Hansen, Edyta Paczkowska, Tomasz K. Wojdacz, Bogusław Machaliński
Software Mentions: 1
Published: over 3 years ago

10.1186/s13059-014-0434-y

Methylome analysis identifies a Wilms tumor epigenetic biomarker detectable in blood
Cited by: 33
Author(s): Jocelyn Charlton, Richard D. Williams, Mark E. Weeks, Neil J. Sebire, Sergey Popov, Gordan Vujanić, William Mifsud, Marisa Alcaide-German, Lee M. Butcher, Stephan Beck, Kathy Pritchard‐Jones
Software Mentions: 1
Published: about 10 years ago

10.18632/aging.101644

LOC134466 methylation promotes oncogenesis of endometrial carcinoma through LOC134466/hsa-miR-196a-5p/TAC1 axis
Cited by: 16
Author(s): Hai Xu, Yuan Sun, Zhen Ma, Xin Xu, Lili Qin, Baoping Luo
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13059-016-1129-3

Identifying aggressive prostate cancer foci using a DNA methylation classifier
Cited by: 38
Author(s): Kamilla Mundbjerg, Sameer Chopra, Mehrdad Alemozaffar, Christopher E. Duymich, Ranjani Lakshminarasimhan, Peter W. Nichols, Manju Aron, Kimberly D. Siegmund, Osamu Ukimura, Monish Aron, Mariana C. Stern, Parkash S. Gill, John D. Carpten, Torben F. Ørntoft, Karina D. Sørensen, Daniel J. Weisenberger, Peter A. Jones, Vinay Duddalwar, Inderbir S. Gill, Gangning Liang
Software Mentions: 1
Published: over 7 years ago

10.1155/2016/2192853

Discovery and Validation of Hypermethylated Markers for Colorectal Cancer
Cited by: 16
Author(s): Jiaojiao Wei, Guodong Li, Shuwei Dang, Yong Jin Zhou, Kai Zeng, Ming Liu
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.27469

DNA methylation of MMPs and TIMPs in atherothrombosis process in carotid plaques and blood tissues
Cited by: 4
Author(s): Cristina Gallego-Fábrega, Natàlia Cullell, Carolina Soriano‐Tárraga, Caty Carrera, Nuria P. Torres-Águila, Elena Muiño, Jara Cárcel‐Márquez, Manuel Castro de Moura, Alba Fernández‐Sanlés, Manel Esteller, Roberto Elosúa, Jordi Jiménez‐Conde, Jaume Roquer, Joan Montaner, Jerzy Krupiński, Israel Fernández‐Cadenas
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2019.00032

Preeclampsia-Associated Alteration of DNA Methylation in Fetal Endothelial Progenitor Cells
Cited by: 12
Author(s): Lars Brodowski, Tristan Zindler, Sandra von Hardenberg, Bianca Schröder‐Heurich, Constantin S. von Kaisenberg, Helge Frieling, Carl A. Hubel, Thilo Dörk, Frauke von Versen‐Höynck
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.708326

Integrative Analysis of DNA Methylation and microRNA Expression Reveals Mechanisms of Racial Heterogeneity in Hepatocellular Carcinoma
Cited by: 5
Author(s): Rency S. Varghese, Megan E. Barefoot, Sidharth Jain, Yifan Chen, Yunxi Zhang, Amber Alley, Alexander Kroemer, Mahlet G. Tadesse, Deepak Kumar, Zaki A. Sherif, Habtom W. Ressom
Software Mentions: 1
Published: about 3 years ago

10.1186/s13073-014-0116-0

Assessment of patient-derived tumour xenografts (PDXs) as a discovery tool for cancer epigenomics
Cited by: 24
Author(s): Paul Guilhamon, Lee M. Butcher, Nadège Presneau, Gareth A. Wilson, Andrew Feber, Dirk S. Paul, Moritz Schütte, Johannes Haybaeck, Ulrich Keilholz, Jens Hoffman, Mark T. Ross, Adrienne M. Flanagan, Stephan Beck
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13073-015-0136-4

Comparative methylome analysis identifies new tumour subtypes and biomarkers for transformation of nephrogenic rests into Wilms tumour
Cited by: 39
Author(s): Jocelyn Charlton, Richard D. Williams, Neil J. Sebire, Sergey Popov, Gordan Vujanić, Tasnim Chagtai, Marisa Alcaide-German, Tiffany Morris, Lee M. Butcher, Paul Guilhamon, Stephan Beck, Kathy Pritchard‐Jones
Software Mentions: 1
Published: over 9 years ago

Projects: bioconductor: ChAMP

Papers Mentioning ChAMP 208