Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: CNVrd2
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CNVrd2
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
1 version
Latest release: about 1 year ago
20,843 downloads total
Papers Mentioning CNVrd2 7
10.1186/s12864-015-2096-x
The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica BorkhCited by: 19
Author(s): James Boocock, David Chagné, Tony R. Merriman, Michael A. Black
Software Mentions: 5
Published: about 9 years ago
10.3389/fgene.2014.00248
The CNVrd2 package: measurement of copy number at complex loci using high-throughput sequencing dataCited by: 22
Author(s): Hoang Nguyen, Tony R. Merriman, Michael A. Black
Software Mentions: 4
Published: over 10 years ago
10.3389/fgene.2015.00045
Identification of copy number variants in whole-genome data using Reference Coverage ProfilesCited by: 18
Author(s): Gustavo Glusman, Alissa L. Severson, Varsha Dhankani, Max Robinson, Terry Farrah, Denise E. Mauldin, Anna Barbara Stittrich, Seth A. Ament, Jared C. Roach, Mary E. Brunkow, Dale L. Bodian, Joseph G. Vockley, Ilya Shmulevich, John E. Niederhuber, Leroy Hood
Software Mentions: 2
Published: almost 10 years ago
10.3389/fgene.2016.00160
SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable RegionsCited by: 7
Author(s): Hoang Nguyen, James Boocock, Tony R. Merriman, Michael A. Black
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pcbi.1007069
Comprehensively benchmarking applications for detecting copy number variationCited by: 55
Author(s): Le Zhang, Wanyu Bai, Yuan Ni, Zhenglin Du
Software Mentions: 1
Published: over 5 years ago
10.12688/wellcomeopenres.13902.2
Human CCL3L1 copy number variation, gene expression, and the role of the CCL3L1-CCR5 axis in lung functionCited by: 10
Author(s): Adeolu B. Adewoye, Nick Shrine, Linda Odenthal-Hesse, Samantha Welsh, Anders Mälarstig, Scott A. Jelinsky, Iain Kilty, Martin D. Tobin, Edward J. Hollox, Louise V. Wain
Software Mentions: 1
Published: over 6 years ago
10.1186/s12896-019-0523-9
Copy number determination of the gene for the human pancreatic polypeptide receptor NPY4R using read depth analysis and droplet digital PCRCited by: 2
Author(s): Kateryna Shebanits, Torsten Günther, Ada Johansson, Khurram Maqbool, Lars Feuk, Mattias Jakobsson, Dan Larhammar
Software Mentions: 1
Published: over 5 years ago