Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: CAMERA
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CAMERA
Collection of annotation related methods for mass spectrometry data
1 version
Latest release: about 1 year ago
8 dependent packages
102,123 downloads total
Papers Mentioning CAMERA 429
10.4056/sigs.802738
Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010Cited by: 2
Author(s): Lynette Hirschman, Peter J. Sterk, Dawn Field, John Wooley, Guy Cochrane, Jack A. Gilbert, Eugene Kolker, Nikos C. Kyrpides, Patrick Meyer, Ilene Karsch-Mizrachi, Yasukazu Nakamura, Susanna-Assunta Sansone, Lynn M. Schriml, Tatiana Tatusova, Owen White, Pelin Yilmaz
Software Mentions: 1
Published: over 14 years ago
10.4056/sigs.1383476
Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010Cited by: 4
Author(s): Dawn Field, Susanna Assunta Sansone, Edward F. DeLong, Peter J. Sterk, Iddo Friedberg, Renzo Kottmann, Lynette Hirschman, George M Garrity, Guy Cochrane, John Wooley, Folker Meyer, Sarah Hunter, Owen White
Software Mentions: 1
Published: almost 15 years ago
10.4056/sigs.1333437
Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010Cited by: 7
Author(s): Jack A. Gilbert, Patrick Meyer, Rob Knight, Dawn Field, Nikos C. Kyrpides, Pelin Yilmaz, John Wooley
Software Mentions: 1
Published: almost 15 years ago
10.4056/sigs.4319681
Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012.Cited by: 1
Author(s): Neil Davies, Dawn Field, Linda Amaral‐Zettler, Katharine Barker, Mesude Bicak, Sarah J. Bourlat, Jonathan A. Coddington, John Deck, Alexei J. Drummond, Jack A. Gilbert, Frank Oliver Glöckner, Renzo Kottmann, Christopher P. Meyer, Norman Morrison, Matthias Obst, Robert J. Robbins, Lynn M. Schriml, Peter J. Sterk, Steven Stones-Havas
Software Mentions: 1
Published: over 10 years ago
10.4056/sigs.5749944
Meeting report: Ocean ‘omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013)Cited by: 5
Author(s): Jack A. Gilbert, Gregory J. Dick, Bethany D. Jenkins, John F. Heidelberg, Eric E. Allen, Katherine Mackey, Edward F. DeLong
Software Mentions: 1
Published: over 10 years ago
10.1186/1944-3277-9-18
Metazen – metadata capture for metagenomesCited by: 6
Author(s): Jared Bischof, Travis Harrison, Tobias Paczian, Elizabeth M. Glass, Andreas Wilke, Patrick Meyer
Software Mentions: 1
Published: almost 10 years ago
10.1186/s13287-015-0250-7
Tissues from equine cadaver ligaments up to 72 hours of post-mortem: a promising reservoir of stem cellsCited by: 14
Author(s): Mohamad Khir Shikh Alsook, Annick Gabriel, Joëlle Piret, Olivier Waroux, Céline Tonus, Delphine Connan, Etienne Baise, Nadine Antoine
Software Mentions: 1
Published: almost 9 years ago
10.3390/toxins12030192
Salt Shock Responses of Microcystis Revealed through Physiological, Transcript, and Metabolomic AnalysesCited by: 14
Author(s): Maxime Georges des Aulnois, Damien Réveillon, Elise Robert, Amandine Caruana, Enora Briand, Arthur Guljamow, Elke Dittmann, Zouher Amzil, Myriam Bormans
Software Mentions: 1
Published: over 4 years ago
10.3390/toxins12080479
Iron Deposits in Periaqueductal Gray Matter Are Associated with Poor Response to OnabotulinumtoxinA in Chronic MigraineCited by: 12
Author(s): Clara Domínguez Vivero, Yago Leira, María de las Mercedes Paino Piñeiro, Xiana Rodríguez‐Osorio, Pedro Ramos‐Cabrer, Carmen Martín, Tomás Sobrino, Francisco Campos, José Castillo, Rogelio Leira
Software Mentions: 1
Published: over 4 years ago
10.3390/toxins13070468
Identification and Functional Characterization of the Gene Cluster Responsible for Fusaproliferin Biosynthesis in Fusarium proliferatumCited by: 7
Author(s): Asja Ćeranić, T Svoboda, Franz Berthiller, Michael Sulyok, Jonathan Matthew Samson, Ulrich Güldener, Rainer Schuhmacher, Gerhard Adam
Software Mentions: 1
Published: over 3 years ago
10.1128/mSystems.00638-19
Marine Metabolomics: a Method for Nontargeted Measurement of Metabolites in Seawater by Gas Chromatography–Mass SpectrometryCited by: 41
Author(s): Emilia M. Sogin, Erik Puskás, Nicole Dubilier, Manuel Liebeke
Software Mentions: 1
Published: almost 5 years ago
10.1128/mSystems.00587-20
Microbiota-Derived Short-Chain Fatty Acids Promote LAMTOR2-Mediated Immune Responses in MacrophagesCited by: 33
Author(s): Ting Wu, Hongru Li, Cong Su, Fangming Xu, Guangwei Yang, Kaili Sun, Mingxiang Xu, Na Lv, Meng Bao, Yanyan Liu, Lintao Hu, Yan Liu, Yufeng Gao, Heng Wang, Yanhu Lan, Dexiang Xu, Jiabin Li
Software Mentions: 1
Published: almost 4 years ago
10.1038/ismej.2016.6
Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSPCited by: 104
Author(s): Winifred M. Johnson, Melissa C. Kido Soule, Elizabeth B. Kujawinski
Software Mentions: 1
Published: almost 9 years ago
10.1007/s10545-017-0080-0
Advances in metabolome information retrieval: turning chemistry into biology. Part II: biological information recoveryCited by: 14
Author(s): Abdellah Tebani, Carlos Afonso, Soumeya Bekri
Software Mentions: 1
Published: about 7 years ago
10.1007/s10545-018-0139-6
Integration of genomics and metabolomics for prioritization of rare disease variants: a 2018 literature reviewCited by: 36
Author(s): Emma Graham, Jessica Lee, Magda Price, Maja Tarailo‐Graovac, Allison Matthews, Udo F. H. Engelke, Jeffrey Tang, Leo A. J. Kluijtmans, Ron A. Wevers, Wyeth W. Wasserman, Clara van Karnebeek, Sara Mostafavi
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.37093
Blumenols as shoot markers of root symbiosis with arbuscular mycorrhizal fungiCited by: 52
Author(s): Ming Wang, M. Schäfer, Dapeng Li, Rayko Halitschke, Chuanfu Dong, Erica McGale, Christian Paetz, Yuanyuan Song, Suhua Li, Junfu Dong, Sven Heiling, Karin Groten, Philipp Franken, Michael Bitterlich, Maria J. Harrison, Uta Paszkowski, Ian T. Baldwin
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.07641
How scent and nectar influence floral antagonists and mutualistsCited by: 55
Author(s): Danny Kessler, Mario Kallenbach, Celia Diezel, Eva Rothe, Mark H. Murdock, Ian Thomas Baldwin
Software Mentions: 1
Published: over 9 years ago
10.3390/ijms19051471
Combined Analysis of the Fruit Metabolome and Transcriptome Reveals Candidate Genes Involved in Flavonoid Biosynthesis in Actinidia argutaCited by: 122
Author(s): Yukuo Li, Jinbao Fang, Xiujuan Qi, Miaomiao Lin, Yunpeng Zhong, Lei Sun, Wen Cui
Software Mentions: 1
Published: over 6 years ago
10.3390/ijms19113597
Development of Biomarkers for Inhibition of SLC6A19 (B0AT1)—A Potential Target to Treat Metabolic DisordersCited by: 18
Author(s): Kiran Javed, Qi Cheng, Adam J. Carroll, Thy T. Truong, Stefan Bröer
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms20020379
Analytical Methods for Detection of Plant Metabolomes Changes in Response to Biotic and Abiotic StressesCited by: 70
Author(s): Anna Piasecka, P. Kachlicki, Maciej Stobiecki
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms20174282
Hippocampus Metabolic Disturbance and Autophagy Deficiency in Olfactory Bulbectomized Rats and the Modulatory Effect of FluoxetineCited by: 18
Author(s): Yunfeng Zhou, Tao Xue, Zhi Wang, Linyin Feng, Lisha Wang, Xinmin Liu, Rui‐Le Pan, Yonghong Liao, Qi Chang
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms22031247
Untargeted Metabolomics Unveil Changes in Autotrophic and Mixotrophic Galdieria sulphuraria Exposed to High-Light IntensityCited by: 5
Author(s): Lu Liu, Carlos Sanchez-Arcos, Georg Pohnert, Wei Dong
Software Mentions: 1
Published: almost 4 years ago
10.18632/oncotarget.16739
Metabolic profiling and novel plasma biomarkers for predicting survival in epithelial ovarian cancerCited by: 27
Author(s): Hongyu Xie, Yan Hou, Jinlong Cheng, Margarita S. Openkova, Bairong Xia, Wenjie Wang, Ang Li, Kai Yang, Junnan Li, Huan Xu, Chunyan Yang, Libing Ma, Zhenzi Li, Xin Fan, Kang Li, Ge Lou
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.11603
Distinct plasma lipids profiles of recurrent ovarian cancer by liquid chromatography-mass spectrometryCited by: 32
Author(s): Junnan Li, Hongyu Xie, Ang Li, Jinlong Cheng, Kai Yang, Jingtao Wang, Wenjie Wang, Fan Zhang, Zhenzi Li, Harman S. Dhillon, Margarita S. Openkova, Xiao‐Hua Zhou, Kang Li, Yan Hou
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.21289
Plasma lipid profiling and diagnostic biomarkers for oral squamous cell carcinomaCited by: 14
Author(s): Lina Wang, Xin Wang, Ying Liu, Yan Hou, Fengyu Sun, Shuang Zhou, Chunming Li, Bin Zhang
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.21779
Multi-omics analyses of red blood cell reveal antioxidation mechanisms associated with hemolytic toxicity of gossypolCited by: 7
Author(s): Chaohua Tang, Qingshi Meng, Kai Zhang, Tengfei Zhan, Qingyu Zhao, Sheng Zhang, Junmin Zhang
Software Mentions: 1
Published: about 7 years ago
10.1098/rsob.190229
High-throughput dense reconstruction of cell lineagesCited by: 19
Author(s): Isabel Espinosa-Medina, Jorge García-Marqués, Connie Cepko, Tzumin Lee
Software Mentions: 1
Published: almost 5 years ago
10.1155/2019/5768953
The Effects of Age and Reproduction on the Lipidome of<i>Caenorhabditis elegans</i>Cited by: 15
Author(s): Qin-Li Wan, Zhonglin Yang, Xiao-Gang Zhou, Aijun Ding, Yuan-Zhu Pu, Huai Rong Luo, Gui-Sheng Wu
Software Mentions: 1
Published: over 5 years ago