Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: Biostrings
https://packages.ecosyste.ms/registries/bioconductor.org/packages/Biostrings
Efficient manipulation of biological strings
3 versions
Latest release: 12 months ago
323 dependent packages
5,528,488 downloads total
Papers Mentioning Biostrings 220
10.1371/journal.pone.0167602
The Number of Overlapping AID Hotspots in Germline IGHV Genes Is Inversely Correlated with Mutation Frequency in Chronic Lymphocytic LeukemiaCited by: 4
Author(s): Chaohui Yuan, Charles C. Chu, Xiao‐Jie Yan, Davide Bagnara, Nicholas Chiorazzi, Thomas MacCarthy
Software Mentions: 1
Published: over 7 years ago
10.1128/mSystems.00029-16
Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of SelectionCited by: 79
Author(s): Inês N. Silva, Pedro M. Santos, Mário R. Santos, James E. A. Zlosnik, David P. Speert, Sean W. Buskirk, Eric L. Bruger, Christopher M. Waters, Vaughn S. Cooper, Leonilde M. Moreira
Software Mentions: 1
Published: over 8 years ago
10.1155/2020/8819942
Randomness for Nucleotide Sequences of SARS-CoV-2 and Its Related SubfamiliesCited by: 5
Author(s): Ray-Ming Chen
Software Mentions: 1
Published: almost 4 years ago
10.1093/database/baab020
COVIDOUTCOME—estimating COVID severity based on mutation signatures in the SARS-CoV-2 genomeCited by: 15
Author(s): Ádám Nagy, Balázs Ligeti, János Szebeni, Sándor Pongor, Balázs Gyrffy
Software Mentions: 1
Published: almost 4 years ago
10.7554/eLife.34594
Ancient mechanisms for the evolution of the bicoid homeodomain's function in fly developmentCited by: 28
Author(s): Qinwen Liu, Pınar Önal, Rhea R. Datta, Julia M. Rogers, Urs Schmidt‐Ott, Martha L. Bulyk, Stephen Small, Joseph W. Thornton
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pbio.1002315
The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X ChromosomeCited by: 22
Author(s): Laurence D. Hurst, Avazeh T. Ghanbarian, Alistair R.R. Forrest, Łukasz Huminiecki
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13059-015-0777-z
Determining exon connectivity in complex mRNAs by nanopore sequencingCited by: 133
Author(s): Mohan Bolisetty, Gopinath Rajadinakaran, Brenton R. Graveley
Software Mentions: 1
Published: about 9 years ago
10.1186/gb-2011-12-10-r98
The transcriptional landscape of Chlamydia pneumoniaeCited by: 73
Author(s): Marco Albrecht, Cynthia M. Sharma, Marcus Dittrich, Tobias Müller, Richard Reinhardt, Jörg Vogel, Thomas Rudel
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0144816
Complex Genotype Mixtures Analyzed by Deep Sequencing in Two Different Regions of Hepatitis B VirusCited by: 8
Author(s): Andrea Caballero, Josep Gregori, María Homs, David Tabernero, Carolina González, Josep Quer, Maria Di Blasi, Rosario Casillas, Leonardo Nieto, Mar Riveiro‐Barciela, Rafael Esteban, Marı́a Buti, Francisco Rodríguez‐Frías
Software Mentions: 1
Published: almost 9 years ago
10.3390/genes12081223
Suggested Absence of Horizontal Transfer of Retrotransposons between Humans and Domestic Mammal SpeciesCited by: 4
Author(s): Nicole Wanner, Christopher Faulk
Software Mentions: 1
Published: about 3 years ago
10.1016/j.molcel.2014.01.029
The Breast Cancer Oncogene EMSY Represses Transcription of Antimetastatic microRNA miR-31Cited by: 49
Author(s): Emmanuelle Viré, Christina Curtis, Verónica Dávalos, Anna Git, Samuel Robson, Alberto Villanueva, August Vidal, Isaia Barbieri, Samuel Aparicio, Manel Esteller, Carlos Caldas, Tony Kouzarides
Software Mentions: 1
Published: over 10 years ago
10.3390/genes10040291
Pacbio Sequencing Reveals Identical Organelle Genomes between American Cranberry (Vaccinium macrocarpon Ait.) and a Wild RelativeCited by: 10
Author(s): Luis Díaz-Garcia, Lorraine Rodríguez-Bonilla, Jessica Rohde, Tyler Smith, Juan Zalapa
Software Mentions: 1
Published: over 5 years ago
10.1186/s12915-014-0074-4
Human endogenous retroviral elements promote genome instability via non-allelic homologous recombinationCited by: 57
Author(s): Ian Campbell, Tomasz Gambin, Piotr Dittwald, Christine R. Beck, Andrey Shuvarikov, Patricia Hixson, Ankita Patel, Anna Gambin, Chad A. Shaw, Jill A. Rosenfeld, Paweł Stankiewicz
Software Mentions: 1
Published: about 10 years ago
10.12688/f1000research.22507.2
In silico identification of vaccine targets for 2019-nCoVCited by: 61
Author(s): Chloe H. Lee, Hashem Koohy
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.ppat.1004604
Dengue Virus RNA Structure Specialization Facilitates Host AdaptationCited by: 128
Author(s): Sergio Villordo, Claudia Verónica Filomatori, Irma Sánchez-Vargas, Carol D. Blair, Andrea V. Gamarnik
Software Mentions: 1
Published: over 9 years ago
10.1186/s12983-019-0349-2
Transcriptome of pleuropodia from locust embryos supports that these organs produce enzymes enabling the larva to hatchCited by: 7
Author(s): Barbora Konopová, Elisa Buchberger, Alastair Crisp
Software Mentions: 1
Published: over 4 years ago
10.1186/s40168-019-0697-3
Microbiomes of stony and soft deep-sea corals share rare core bacteriaCited by: 37
Author(s): Christina A. Kellogg
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2017.01753
eQTLs Regulating Transcript Variations Associated with Rapid Internode Elongation in Deepwater RiceCited by: 18
Author(s): Takeshi Kuroha, Keisuke Nagai, Yusuke Kurokawa, Yoshiaki Nagamura, Miyako Kusano, Hirofumi Yasui, Motoyuki Ashikari, Atsushi Fukushima
Software Mentions: 1
Published: almost 7 years ago
10.1093/bib/bbw138
High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunitiesCited by: 63
Author(s): James Heather, Maznah Ismail, Theres Oakes, Benjamin M. Chain
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2016.01883
Comparative Characterization of the Leaf Tissue of Physalis alkekengi and Physalis peruviana Using RNA-seq and Metabolite ProfilingCited by: 24
Author(s): Atsushi Fukushima, Michimi Nakamura, Hideyuki Suzuki, Mami Yamazaki, Eva Knoch, Tetsuya Mori, Naoyuki Umemoto, Masaki Morita, Go Hirai, Mikiko Sodeoka, Kazuki Saito
Software Mentions: 1
Published: almost 8 years ago