bioconductor: ArrayExpress | Projects

10.3389/fcell.2020.629030

Dynamic Expression of m6A Regulators During Multiple Human Tissue Development and Cancers
Cited by: 8
Author(s): Ya Zhang, Sicong Xu, Gang Xu, Yueying Gao, Si Li, Ke Zhang, Zhanyu Tian, Jing Guo, Xia Li, Juan Xu, Yongsheng Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.642681

Analyzing Metabolic States of Adipogenic and Osteogenic Differentiation in Human Mesenchymal Stem Cells via Genome Scale Metabolic Model Reconstruction
Cited by: 4
Author(s): Þóra Björg Sigmarsdóttir, Sarah McGarrity, James T. Yurkovich, Óttar Rolfsson, Ólafur E. Sigurjónsson
Software Mentions: 2
Published: over 5 years ago

10.1186/s12859-020-03932-5

GEOlimma: differential expression analysis and feature selection using pre-existing microarray data
Cited by: 4
Author(s): Liangqun Lu, Kevin Townsend, Bernie J. Daigle
Software Mentions: 2
Published: over 5 years ago

10.1002/biot.201100305

Molecular signatures from omics data: From chaos to consensus
Cited by: 103
Author(s): Jaeyun Sung, Yuliang Wang, Sriram Chandrasekaran, Daniela Witten, Nathan D. Price
Software Mentions: 2
Published: over 14 years ago

10.3389/fcvm.2019.00165

Single Cell Analysis of Endothelial Cells Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features
Cited by: 64
Author(s): Wei Feng, Lyuqin Chen, Patricia K. Nguyen, Sean M. Wu, Guang Li
Software Mentions: 2
Published: almost 7 years ago

10.3390/biom9070282

Exploring the Molecular Mechanism of the Drug-Treated Breast Cancer Based on Gene Expression Microarray
Cited by: 12
Author(s): Ali Mohamed Alshabi, Basavaraj Vastrad, Ibrahim Ahmed Shaikh, Chanabasayya Vastrad
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-6-S4-S14

Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical role in cell-cycle control
Cited by: 20
Author(s): Giacomo Finocchiaro, Francesco Mancuso, Heiko Müller
Software Mentions: 2
Published: almost 21 years ago

10.1186/s12864-016-3435-2

Meta-analysis reveals conserved cell cycle transcriptional network across multiple human cell types
Cited by: 29
Author(s): Bruno Giotti, Anagha Joshi, Tom C. Freeman
Software Mentions: 2
Published: almost 10 years ago

10.1111/febs.15261

Data libraries – the missing element for modeling biological systems
Cited by: 3
Author(s): Anastasia Baryshnikova
Software Mentions: 2
Published: over 6 years ago

10.1002/2211-5463.12354

The clinical value of miR-193a-3p in non-small cell lung cancer and its potential molecular mechanism exploredin silicousing RNA-sequencing and microarray data
Cited by: 11
Author(s): Xiang Gao, Rongjiang Tang, Qiongni Xie, Jiaying Lin, Hong-lan Shi, Gang Chen, Zu‐Yun Li
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-10-S3-S15

Improving gene expression similarity measurement using pathway-based analytic dimension
Cited by: 4
Author(s): Changwon Keum, Jung Hoon Woo, Won Seok Oh, Sue-Nie Park, Kyoung Tai No
Software Mentions: 2
Published: almost 17 years ago

10.3389/fbioe.2019.00106

Cyberbiosecurity Challenges of Pathogen Genome Databases
Cited by: 15
Author(s): Boris A. Vinatzer, Lenwood S. Heath, Hussain M. J. Almohri, Michael J. Stulberg, Christopher J. Lowe, Song Li
Software Mentions: 2
Published: over 7 years ago

10.1155/2021/8849415

Identification of Multiple Hub Genes and Pathways in Hepatocellular Carcinoma: A Bioinformatics Analysis
Cited by: 8
Author(s): Junwei Liu, Fang Han, Jianyi Ding, Xiaodong Liang, Jie Liu, Dongsheng Huang, Chengwu Zhang
Software Mentions: 2
Published: over 5 years ago

10.1155/2014/170289

Clinic-Genomic Association Mining for Colorectal Cancer Using Publicly Available Datasets
Cited by: 5
Author(s): Fang Liu, Feng Yi, Zhenye Li, Chao Pan, Yuncong Su, Rui Yang, Lei Song, Huilong Duan, Ning Deng
Software Mentions: 2
Published: almost 13 years ago

10.1111/acel.13092

Hdac3, Setdb1, and Kap1 mark H3K9me3/H3K14ac bivalent regions in young and aged liver
Cited by: 20
Author(s): Andrew Price, Mohan C. Manjegowda, Jessica Kain, Swetha Anandh, Irina M. Bochkis
Software Mentions: 2
Published: almost 7 years ago

10.12688/f1000research.28449.1

Recommendations for the FAIRification of genomic track metadata
Cited by: 7
Author(s): Sveinung Gundersen, Sanjay Boddu, Salvador Capella-Gutierrez, Finn Drabløs, José Marı́a Fernández, Radmila Kompova, Kieron Taylor, Dmytro Titov, Daniel R. Zerbino, Eivind Hovig
Software Mentions: 2
Published: over 5 years ago

10.12688/f1000research.15119.1

Norwegian e-Infrastructure for Life Sciences (NeLS)
Cited by: 10
Author(s): Kidane Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Zhang Wei, Christian Andreetta, Teshome Dagne Mulugeta, Matúš Kalaš, Morten Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2105-11-36

Quantitative model for inferring dynamic regulation of the tumour suppressor gene p53
Cited by: 16
Author(s): Junbai Wang, Tianhai Tian
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2164-7-240

MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies
Cited by: 5
Author(s): Paul Honoré, Samuel Granjeaud, Rebecca Tagett, S. Deraco, Emmanuel Beaudoing, Jacques Rougemont, Stéphane Debono, Pascal Hingamp
Software Mentions: 2
Published: about 20 years ago

10.1093/bioinformatics/btv002

RNA-Rocket: an RNA-Seq analysis resource for infectious disease research
Cited by: 11
Author(s): Andrew S. Warren, Cristina Aurrecoechea, Brian P. Brunk, Prerak Desai, Scott J. Emrich, Gloria I. Giraldo-Calderón, Omar S. Harb, Deborah Hix, Daniel Lawson, Dustin Machi, Chunhong Mao, Michael McClelland, Eric K. Nordberg, Maulik Shukla, Leslie B. Vosshall, Alice R. Wattam, Rebecca Will, Hyun Seung Yoo, Bruno W. S. Sobral
Software Mentions: 2
Published: almost 12 years ago

10.1186/s40001-018-0328-7

Membrane-bound estrogen receptor alpha initiated signaling is dynamin dependent in breast cancer cells
Cited by: 9
Author(s): István Marczell, Petra Balogh, G Nyírő, Anna L. Kiss, Balázs Kovács, Gábor Békési, Kàroly Rácz, Attila Patócs
Software Mentions: 2
Published: over 8 years ago

10.1186/s13040-014-0035-z

Identifying genetic interactions associated with late-onset Alzheimer’s disease
Cited by: 17
Author(s): Charalampos S. Floudas, Nara Um, M. Ilyas Kamboh, M. Michael Barmada, Shyam Visweswaran
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12864-017-3627-4

Exploring the nature of prediagnostic blood transcriptome markers of chronic lymphocytic leukemia by assessing their overlap with the transcriptome at the clinical stage
Cited by: 3
Author(s): Jelle Vlaanderen, Max Leenders, Marc Chadeau‐Hyam, Lützen Portengen, Soterios A. Kyrtopoulos, Ingvar A. Bergdahl, Anders Johansson, Dennie G. A. J. Hebels, Theo M. C. M. de Kok, Paolo Víneis, Roel Vermeulen
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-11-267

A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes
Cited by: 13
Author(s): Guofeng Meng, Axel Mosig, Martin Vingron
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2105-13-S1-S8

Argudas: lessons for argumentation in biology based on a gene expression use case
Cited by: 2
Author(s): Kenneth McLeod, Gus Ferguson, Albert Burger
Software Mentions: 2
Published: over 14 years ago

10.1186/s13072-018-0232-y

Non-canonical Drosophila X chromosome dosage compensation and repressive topologically associated domains
Cited by: 7
Author(s): Hangnoh Lee, Brian Oliver
Software Mentions: 2
Published: almost 8 years ago

10.1530/ERC-14-0454

HES5 silencing is an early and recurrent change in prostate tumourigenesis
Cited by: 10
Author(s): Charles E. Massie, Inmaculada Spiteri, Helen Ross-Adams, Hayley J. Luxton, Jonathan Kay, Hayley C. Whitaker, Mark J. Dunning, Alastair Lamb, Antonio Ramos-Montoya, Daniel Brewer, Christopher S. Cooper, Rosalind Eeles, _ _, Anne Y. Warren, Simon Tavaré, David E. Neal, Andy G. Lynch
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12859-014-0383-1

Efficient prediction of human protein-protein interactions at a global scale
Cited by: 31
Author(s): Andrew Schoenrock, Bahram Samanfar, Sylvain Pitre, M. A. Hooshyar, Ke Jin, Charles Phillips, Hui Wang, Sadhna Phanse, Katayoun Omidi, Yuan Gui, Alamgir, Alex Wong, Fredrik Barrenäs, Mohan Babu, Mikael Benson, Michael A. Langston, James R. Green, Frank Dehne, Ashkan Golshani
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2164-15-231

An overlapping set of genes is regulated by both NFIB and the glucocorticoid receptor during lung maturation
Cited by: 12
Author(s): Mathieu Lajoie, Yu-Chih Hsu, Richard M. Gronostajski, Timothy L. Bailey
Software Mentions: 2
Published: over 12 years ago

10.15252/embr.201540476

Abo1, a conserved bromodomain <scp>AAA</scp> ‐ <scp>ATP</scp> ase, maintains global nucleosome occupancy and organisation
Cited by: 20
Author(s): Csenge Gal, Heather E. Murton, Lakxmi Subramanian, Alex J. Whale, Karen Moore, Konrad Paszkiewicz, Sandra Codlin, Jürg Bähler, Kevin M. Creamer, Janet F. Partridge, Robin C. Allshire, Nicholas A. Kent, Simon K. Whitehall
Software Mentions: 2
Published: almost 11 years ago

10.1111/1462-2920.13930

Transcriptome and proteome dynamics in chemostat culture reveal howCampylobacter jejunimodulates metabolism, stress responses and virulence factors upon changes in oxygen availability
Cited by: 28
Author(s): Edward Guccione, John J. Kendall, Andrew Hitchcock, Nitanshu Garg, Michael A. White, Francis Mulholland, Robert K. Poole, David J. Kelly
Software Mentions: 2
Published: about 9 years ago

10.1186/s12918-017-0466-5

Incorporating genomic, transcriptomic and clinical data: a prognostic and stem cell-like MYC and PRC imbalance in high-risk neuroblastoma
Cited by: 8
Author(s): Xinan Yang, Fangming Tang, Jisu Shin, John M. Cunningham
Software Mentions: 2
Published: about 9 years ago

10.1186/1752-0509-2-36

A logic-based diagram of signalling pathways central to macrophage activation
Cited by: 65
Author(s): Sobia Raza, Kevin A. Robertson, Paul Lacaze, David L. Page, Anton J. Enright, Peter Ghazal, Tom C. Freeman
Software Mentions: 2
Published: over 18 years ago

10.15252/embr.201846222

Budding yeast Rif1 binds to replication origins and protects <scp>DNA</scp> at blocked replication forks
Cited by: 30
Author(s): Shin‐ichiro Hiraga, Chandre Monerawela, Yuki Katou, Sophie Shaw, Kate Rosalind Mary Clark, Katsuhiko Shirahige, Anne Donaldson
Software Mentions: 2
Published: about 8 years ago

10.1007/s11356-017-0515-z

Transcriptional changes measured in rice roots after exposure to arsenite-contaminated sediments
Cited by: 7
Author(s): Alexandra Brinke, Georg Reifferscheid, Roland Klein, Ute Feiler, Sebastian Buchinger
Software Mentions: 2
Published: almost 9 years ago

10.1186/1752-0509-8-26

Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions
Cited by: 5
Author(s): Shubhada R. Hegde, Khushbu Pal, Shekhar C. Mande
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2105-10-409

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation)
Cited by: 89
Author(s): Martin J. Aryee, José A. Gutiérrez‐Pabello, Igor Kramnik, Tapabrata Maiti, John Quackenbush
Software Mentions: 2
Published: almost 17 years ago

10.18632/aging.203406

Autophagic flux in cancer cells at the invasive front in the tumor-stroma border
Cited by: 6
Author(s): Fei Yan, Xuexi Zhang, Rongying Tan, Mingchen Li, Zengtuan Xiao, Hao Wang, Zhenfa Zhang, Zhenyi Ma, Liu Zhe
Software Mentions: 2
Published: about 5 years ago

10.1186/1752-0509-8-S2-I1

Data integration in the era of omics: current and future challenges
Cited by: 295
Author(s): David Gomez-Cabrero, Imad Abugessaisa, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager, Andreas Gisel, Esteban Ballestar, Erik Bongcam‐Rudloff, Ana Conesa, Jesper Tegnér
Software Mentions: 2
Published: almost 13 years ago

10.1007/s00125-020-05107-6

Metabolic alterations in immune cells associate with progression to type 1 diabetes
Cited by: 37
Author(s): Partho Sen, Alex M. Dickens, M.A. López-Bascón, Tuomas Lindeman, Esko Kemppainen, Santosh Lamichhane, Tuukka Rönkkö, Jorma Ilonen, Jorma Toppari, Riitta Veijola, Heikki Hyöty, Tuulia Hyötyläinen, Mikael Knip, Matej Orešič
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-13-59

Heritable genome-wide variation of gene expression and promoter methylation between wild and domesticated chickens
Cited by: 132
Author(s): Daniel Nätt, Carl-Johan Rubin, Dominic Wright, Martin Johnsson, Johan Bélteky, Leif Andersson, Per Jensen
Software Mentions: 2
Published: over 14 years ago

10.1242/dev.157081

Coordination of meristem and boundary functions by transcription factors in the SHOOT MERISTEMLESS regulatory network
Cited by: 38
Author(s): Simon Scofield, Alex Murison, Angharad Jones, John A. Fozard, Mitsuhiro Aida, Leah R. Band, Malcolm J. Bennett, James A. H. Murray
Software Mentions: 2
Published: almost 9 years ago

10.1155/2016/2619828

Pathway Analysis Based on Attractor and Cross Talk in Colon Cancer
Cited by: 6
Author(s): Yanxia Liu, Lin Wang, Bingping Wang, Meng Yue, Yufeng Cheng
Software Mentions: 2
Published: almost 11 years ago

10.1016/j.ydbio.2011.03.003

A Dictyostelium SH2 adaptor protein required for correct DIF-1 signaling and pattern formation
Cited by: 3
Author(s): Christopher Sugden, Scott R. Ross, Sarah J. Annesley, Christian Callebaut, Gareth Bloomfield, Alasdair Ivens, Jason Skelton, Paul R. Fisher, Geoffrey J. Barton, Jeffrey Williams
Software Mentions: 2
Published: over 15 years ago

10.1016/j.devcel.2016.12.023

Non-Canonical and Sexually Dimorphic X Dosage Compensation States in the Mouse and Human Germline
Cited by: 72
Author(s): Mahesh N. Sangrithi, Hélène Royo, Shantha K. Mahadevaiah, Obah A. Ojarikre, Leena Bhaw, Abdul Karim Sesay, Antoine H.F.M. Peters, Michael Stadler, James M. A. Turner
Software Mentions: 2
Published: over 9 years ago

10.1093/database/baz149

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans
Cited by: 34
Author(s): L. Basten Snoek, M.G. Sterken, Margi Hartanto, Albert-Jan van Zuilichem, J.E. Kammenga, Dick de Ridder, Harm Nijveen
Software Mentions: 2
Published: almost 7 years ago

10.1186/1756-0500-6-72

The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization
Cited by: 2
Author(s): Jaishree Garhyan, Raad Z. Gharaibeh, Stephen J. McGee, Cynthia Gibas
Software Mentions: 2
Published: over 13 years ago

10.1186/1756-0500-4-157

Transcriptional regulatory program in wild-type and retinoblastoma gene-deficient mouse embryonic fibroblasts during adipocyte differentiation
Cited by: 10
Author(s): Robab Hakim-Weber, Anne Krogsdam, Claus Jørgensen, Maria Fischer, Andreas Prokesch, Juliane Gertrude Bogner‐Strauß, Stefan R. Bornstein, Jacob B. Hansen, Lise Madsen, Karsten Kristiansen, Zlatko Trajanoski, Hubert Hackl
Software Mentions: 2
Published: over 15 years ago

10.1186/1471-2164-11-582

Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba)
Cited by: 43
Author(s): Paul J. Seear, Geraint A. Tarling, Gavin Burns, William P. Goodall‐Copestake, E. Gaten, Özge Özkaya, Ezio Rosato
Software Mentions: 2
Published: almost 16 years ago

10.1093/database/baaa111

MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle
Cited by: 2
Author(s): Olof Asplund, Johan Rung, Leif Groop, Rashmi B. Prasad, Ola Hansson
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-8-383

Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map
Cited by: 19
Author(s): Stefano Campanaro, Simone Picelli, Rossella Torregrossa, Laura Colluto, Monica Ceol, Dorella Del Prete, Angela D’Angelo, Giorgio Valle, Franca Anglani
Software Mentions: 2
Published: almost 19 years ago

10.1093/database/bax069

IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes
Cited by: 0
Author(s): I-Man Ng, Jia-Hsin Huang, Shang-Chi Tsai, Huai-Kuang Tsai
Software Mentions: 2
Published: almost 10 years ago

10.1093/database/bav019

BioXpress: an integrated RNA-seq-derived gene expression database for pan-cancer analysis
Cited by: 75
Author(s): Qing Wan, Hayley Dingerdissen, Fan Yu, Naila Gulzar, Yang Pan, Tsung-Jung Wu, Yan Cheng, Haichen Zhang, Raja Mazumder
Software Mentions: 2
Published: almost 12 years ago

10.1186/1471-2164-9-133

A software framework for microarray and gene expression object model (MAGE-OM) array design annotation
Cited by: 1
Author(s): Matloob Qureshi, Alasdair Ivens
Software Mentions: 2
Published: almost 19 years ago

10.1093/database/bav099

NeuroTransDB: highly curated and structured transcriptomic metadata for neurodegenerative diseases
Cited by: 7
Author(s): Shweta Bagewadi, Subash Adhikari, Anjani Dhrangadhariya, Afroza Khanam Irin, Christian Ebeling, A Namasivayam, Matthew J. Page, Martin Hofmann‐Apitius, Philipp Senger
Software Mentions: 2
Published: almost 12 years ago

10.1093/database/baaa002

GXD’s RNA-Seq and Microarray Experiment Search: using curated metadata to reliably find mouse expression studies of interest
Cited by: 2
Author(s): Cyndi M. Smith, James A. Kadin, Richard M. Baldarelli, Jonathan S Beal, Olin Blodgett, Sharon C Giannatto, Joel E. Richardson, Martin Ringwald
Software Mentions: 2
Published: almost 7 years ago

10.1186/1753-6561-5-S2-S10

Managing and querying gene expression data using Curray
Cited by: 3
Author(s): Hasan M. Jamil, Aminul Islam
Software Mentions: 2
Published: over 15 years ago

10.1186/s12859-015-0519-y

Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity
Cited by: 17
Author(s): Xindong Zhang, Lin Gao, Zhiping Liu, Luonan Chen
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-11-7

Decoding pooled RNAi screens by means of barcode tiling arrays
Cited by: 10
Author(s): Michael Boettcher, Johannes Fredebohm, Amin Moghaddas Gholami, Yafit Hachmo, Iris Dotan, Dan Canaani, Jörg D. Hoheisel
Software Mentions: 2
Published: almost 17 years ago

10.3390/antiox5010001

Effects of Antioxidants in Human Cancers: Differential Effects on Non-Coding Intronic RNA Expression
Cited by: 6
Author(s): Shreya Menon, Chunxia Lü, Rajasree Menon, Jessica Schwartz, Yuanfang Guan
Software Mentions: 2
Published: almost 11 years ago

10.1016/j.dib.2019.105053

Data describing the experimental design and quality control of RNA-Seq of human adipose-derived stem cells undergoing early adipogenesis and osteogenesis
Cited by: 5
Author(s): Bruna Hilzendeger Marcon, Lucía Spangenberg, Bernardo Bonilauri, Anny Waloski Robert, Addeli Bez Batti Angulski, Guillermo Cabrera Cabo, Axel R. Cofré, Paulo Sergio Loiacono Bettes, Bruno Dallagiovanna, Patrícia Shigunov
Software Mentions: 2
Published: over 6 years ago

10.1093/database/baab043

The Progenetix oncogenomic resource in 2021
Cited by: 8
Author(s): Qingyao Huang, Paula Carrio-Cordo, Bo Gao, Rahel Paloots, Michael Baudis
Software Mentions: 2
Published: almost 6 years ago

10.1093/database/bau030

'In silico expression analysis', a novel PathoPlant web tool to identify abiotic and biotic stress conditions associated with specific cis-regulatory sequences
Cited by: 18
Author(s): Julio C. Bolívar, Fabian Machens, Yuri Brill, Artyom Romanov, Lorenz Bülow, Reinhard Hehl
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-9-266

Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus
Cited by: 100
Author(s): Jennifer Owen, B Ann Hedley, Claus Svendsen, Jodie F Wren, Martijs J. Jonker, Peter K. Hankard, Linsey J Lister, Stephen R. Stürzenbaum, Andrew Morgan, David J. Spurgeon, Mark Blaxter, Peter Kille
Software Mentions: 2
Published: over 18 years ago

10.1038/s42003-018-0215-3

Sox9 regulates cell state and activity of embryonic mouse mammary progenitor cells
Cited by: 11
Author(s): Naoko Kogata, Philip Bland, Mandy Tsang, Erik Oliemuller, Anne Lowe, Beatrice A. Howard
Software Mentions: 2
Published: almost 8 years ago

10.1038/s42003-021-02215-w

Actin cytoskeleton deregulation confers midostaurin resistance in FLT3-mutant acute myeloid leukemia
Cited by: 11
Author(s): Andoni Garitano‐Trojaola, Ana Sancho, Roland Götz, Patrick Eiring, Susanne Walz, Hardikkumar Jetani, Jesus Gil‐Pulido, Matteo Claudio Da Vià, Eva Teufel, Nadine Rhodes, Larissa Haertle, Estibaliz Arellano-Viera, Raoul Tibes, Andreas Rosenwald, Leo Rasche, Michael Hudecek, Markus Sauer, Jürgen Gröll, Hermann Einsele, Sabrina Kraus, Martin Kortüm
Software Mentions: 2
Published: over 5 years ago

10.1186/s12014-017-9168-7

Proteomic profiling identifies markers for inflammation-related tumor–fibroblast interaction
Cited by: 16
Author(s): Daniel Drev, Andrea Bileck, Zeynep Erdem, Thomas Mohr, Gerald Timelthaler, Andrea Beer, Christopher Gerner, Brigitte Marian
Software Mentions: 2
Published: about 9 years ago

10.1016/j.csbj.2015.10.005

Blood transcriptomics and metabolomics for personalized medicine
Cited by: 66
Author(s): Shuzhao Li, Andrei Todor, Ruiyan Luo
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13148-019-0691-4

DNA methylation changes that precede onset of dysplasia in advanced sessile serrated adenomas
Cited by: 15
Author(s): Cheng Liu, Mark Bettington, Neal I. Walker, Joel Dwine, Barbara A. Leggett, Vicki Whitehall
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-018-5336-z

Characterization of B-BOX gene family and their expression profiles under hormonal, abiotic and metal stresses in Poaceae plants
Cited by: 48
Author(s): Abdullah Shalmani, Xiu-Qing Jing, Yi Shi, Izhar Muhammad, Meng-Ru Zhou, Xiaoli Wei, Qiongqiong Chen, Wenqiang Li, Wenting Liu, Kun-Ming Chen
Software Mentions: 2
Published: almost 8 years ago

10.1186/s13148-018-0554-4

PRC2 targeting is a therapeutic strategy for EZ score defined high-risk multiple myeloma patients and overcome resistance to IMiDs
Cited by: 32
Author(s): Laurie Herviou, Alboukadel Kassambara, Stéphanie Boireau, Robert Naeije, Guilhem Requirand, Carsten Müller‐Tidow, Laure Vincent, Anja Seckinger, Hartmut Goldschmidt, Guillaume Cartron, Dirk Hose, Giacomo Cavalli, Jérôme Moreaux
Software Mentions: 2
Published: about 8 years ago

10.1186/1471-2229-11-113

Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thalianaseeds
Cited by: 48
Author(s): Peter C. McKeown, Sylvia Laouiellé-Duprat, Pjotr Prins, Philip Wolff, Marc W. Schmid, Mark T.A. Donoghue, Antoine Fort, Dorota Duszynska, Aurélie Comte, Nga T. Lao, Trevor Wennblom, G. Smant, Claudia Köhler, Ueli Grossniklaus, Charles Spillane
Software Mentions: 2
Published: about 15 years ago

10.1186/s13148-020-00884-8

meQTL and ncRNA functional analyses of 102 GWAS-SNPs associated with depression implicate HACE1 and SHANK2 genes
Cited by: 19
Author(s): Diana‐Maria Ciuculete, Sarah Voisin, Lara Kular, Jan‐Ingvar Jönsson, Mathias Rask‐Andersen, Jessica Mwinyi, Helgi B. Schiöth
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2229-13-153

Transcriptome analysis of heat stress response in switchgrass (Panicum virgatumL.)
Cited by: 82
Author(s): Yongfang Li, Yixing Wang, Yuhong Tang, Vijaya Gopal Kakani, Ramamurthy Mahalingam
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0062870

Gene Expression Analysis of Peripheral Blood Cells Reveals Toll-Like Receptor Pathway Deregulation in Colorectal Cancer
Cited by: 10
Author(s): Ye Xu, Qinghua Xu, Yang Li, Fang Liu, Xun Ye, Fei Wu, Shujuan Ni, Cong Tan, Guoxiang Cai, Meng Xia, Sanjun Cai, Xiang Du
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0244227

Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans
Cited by: 11
Author(s): Anders Werner, Paula Mölling, Anna Fagerström, Fredrik Dyrkell, Dimitrios Arnellos, Karin Johansson, Martin Sundqvist, Torbjörn Norén
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0015068

Analysis of Kinase Gene Expression Patterns across 5681 Human Tissue Samples Reveals Functional Genomic Taxonomy of the Kinome
Cited by: 45
Author(s): Sami Kilpinen, K. Ojala, Olli Kallioniemi
Software Mentions: 2
Published: almost 16 years ago

10.3390/cells9122693

Targeting Acid Ceramidase to Improve the Radiosensitivity of Rectal Cancer
Cited by: 12
Author(s): Rachael Clifford, Naren Govindarajah, David Bowden, Paul Sutton, Mark A. Glenn, Mahnaz Darvish-Damavandi, Simon Buczacki, Ultan McDermott, Zdzisław M. Szulc, Besim Öğretmen, Jason L. Parsons, Dale Vimalachandran
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2210-8-16

Pharmacokinetics and transcriptional effects of the anti-salmon lice drug emamectin benzoate in Atlantic salmon (Salmo salar L.)
Cited by: 23
Author(s): Pål A. Olsvik, Kai Kristoffer Lie, Eva Mykkeltvedt, Ole Bent Samuelsen, Kjell Petersen, Anne-Kristin Stavrum, Bjørn Tore Lunestad
Software Mentions: 2
Published: about 18 years ago

10.1371/journal.pone.0091272

Increasing Consistency of Disease Biomarker Prediction Across Datasets
Cited by: 5
Author(s): Maria Chikina, Stuart C. Sealfon
Software Mentions: 2
Published: over 12 years ago

10.3390/cancers12102823

Functional Transcription Factor Target Networks Illuminate Control of Epithelial Remodelling
Cited by: 5
Author(s): Ian M. Overton, Andrew H. Sims, Jeremy A. Owen, Bret S.E. Heale, Matthew J. Ford, Alexander L R Lubbock, Erola Pairo-Castineira, Abdelkader Essafi
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2164-14-436

Deciphering the response of Mycobacterium smegmatis to nitrogen stress using bipartite active modules
Cited by: 15
Author(s): Katrina Williams, William A Bryant, Victoria A Jenkins, Geraint Barton, Adam A. Witney, John W. Pinney, Brian D. Robertson
Software Mentions: 2
Published: over 13 years ago

10.3390/cancers11040507

Integrative Analysis Reveals Subtype-Specific Regulatory Determinants in Triple Negative Breast Cancer
Cited by: 8
Author(s): Shujun Huang, Wayne Xu, Pingzhao Hu, Ted M. Lakowski
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-7-145

Identification and characterisation of human apoptosis inducing proteins using cell-based transfection microarrays and expression analysis
Cited by: 44
Author(s): Ella Palmer, Andrew D. Miller, Tom C. Freeman
Software Mentions: 2
Published: over 20 years ago

10.3390/cancers12051136

Increased Level of Long Non-Coding RNA MALAT1 Is a Common Feature of Amoeboid Invasion
Cited by: 4
Author(s): Ladislav Merta, Aneta Gandalovičová, Vladimı́r Čermák, Michal Dibus, Tony Gutschner, Sven Diederichs, Daniel Rösel, Jan Brábek
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-13-187

Genetic and genome-wide transcriptomic analyses identify co-regulation of oxidative response and hormone transcript abundance with vitamin C content in tomato fruit
Cited by: 32
Author(s): Viviana Lima-Silva, Abel Rosado, Vítor Amorim‐Silva, Antonio Muñoz‐Mérida, Clara Pons, Aureliano Bombarely, Oswaldo Trelles, Rafael Fernández-Muñoz, Antonio Granell, Victoriano Valpuesta, Miguel A. Botella
Software Mentions: 2
Published: over 14 years ago

10.3390/cancers13133358

Comprehensive Profiling of Hypoxia-Related miRNAs Identifies miR-23a-3p Overexpression as a Marker of Platinum Resistance and Poor Prognosis in High-Grade Serous Ovarian Cancer
Cited by: 7
Author(s): Paola Todeschini, Elisa Salviato, Chiara Romani, Vittoria Raimondi, Francesco Ciccarese, Federico Ferrari, Germana Tognon, Sérgio Marchini, Maurizio D’Incalci, Laura Zanotti, Antonella Ravaggi, Franco Odicino, Enrico Sartori, Donna M. D’Agostino, Michele Samaja, Chiara Romualdi, Eliana Bignotti
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13153755

Transcription/Replication Conflicts in Tumorigenesis and Their Potential Role as Novel Therapeutic Targets in Multiple Myeloma
Cited by: 6
Author(s): Laure Dutrieux, Yea-Lih Lin, Malik Lutzmann, Raphaël Rodriguez, Michel Cogné, Philippe Pasero, Jérôme Moreaux
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0009779

Hepatic Gene Expression Profile in Mice Perorally Infected with Echinococcus multilocularis Eggs
Cited by: 30
Author(s): Bruno Gottstein, Matthias Wittwer, Marc Schild, Michael Merli, Stephen L. Leib, Norbert Müller, Joachim Müller, Rolf Jaggi
Software Mentions: 2
Published: over 16 years ago

10.1186/1471-2180-10-53

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans
Cited by: 64
Author(s): Sandrine Koechler, Jessica Cleiss-Arnold, Caroline Proux, Odile Sismeiro, Marie‐Agnès Dillies, Florence Goulhen-Chollet, Florence Hommais, Didier Lièvremont, Florence Arsène-Ploetze, Jean‐Yves Coppée, Philippe Bertin
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0231503

Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates
Cited by: 7
Author(s): Katarina Benulič, Mateja Pirš, Natacha Couto, Monika A. Chlebowicz, John W. A. Rossen, Tomaž Mark Zorec, Katja Seme, Mario Poljak, Tatjana Lejko Zupanc, Eva Ružić‐Sabljić, Tjaša Cerar
Software Mentions: 2
Published: over 6 years ago

10.3390/cancers13184577

The Stress-Inducible BCL2A1 Is Required for Ovarian Cancer Metastatic Progression in the Peritoneal Microenvironment
Cited by: 5
Author(s): Rui Liang, Mingo M. H. Yung, Fengjiao He, Peili Jiao, Ki Chan, Hextan Ys Ngan, David W. Chan
Software Mentions: 2
Published: about 5 years ago

10.3390/cancers12030549

Sphere-Forming Culture for Expanding Genetically Distinct Patient-Derived Glioma Stem Cells by Cellular Growth Rate Screening
Cited by: 2
Author(s): Ki Soon Shin, Hong-Jae Shin, Hee Jin Cho, Hyunju Kang, Jin Ku Lee, Yun Jee Seo, Yong Jae Shin, Donggeon Kim, Harim Koo, Doo‐Sik Kong, Ho Jun Seol, Jung-Il Lee, Hye Won Lee, Do‐Hyun Nam
Software Mentions: 2
Published: over 6 years ago

10.1016/j.dib.2017.11.031

Data on novel DNA methylation changes induced by valproic acid in human hepatocytes
Cited by: 3
Author(s): Jarno E J Wolters, SimoneGJ van Breda, Sandra Claessen, T.D. Kok, J.C.S. Kleinjans
Software Mentions: 2
Published: over 8 years ago

10.3389/fgene.2021.649764

Filtering of Data-Driven Gene Regulatory Networks Using Drosophila melanogaster as a Case Study
Cited by: 1
Author(s): Yesid Cuesta-Astroz, Guilherme Gischkow Rucatti, Leandro Murgas, Carol D. SanMartín, Mario Sanhueza, Alberto J. M. Martin
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0242770

Comparison of the human microbiome in adults and children with chronic rhinosinusitis
Cited by: 4
Author(s): Il Ho Park, Joong Seob Lee, Joo Hoo Park, Suk Ho Kang, Seong Ahn Hong, Il Seok Park, Joo Heung Yoon
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0232023

Epithelial changes of congenital intestinal obstruction in a rat model
Cited by: 0
Author(s): Quentin Ballouhey, Laurent Fourcade, Laurence Richard, Camille Bellet, Chaharazed El Hamel, Jean Michel Vallat, Franck Sturtz, Sylvie Bourthoumieu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0005657

Highly Active Microbial Phosphoantigen Induces Rapid yet Sustained MEK/Erk- and PI-3K/Akt-Mediated Signal Transduction in Anti-Tumor Human γδ T-Cells
Cited by: 47
Author(s): Daniel V. Correia, Francisco d’Orey, Bruno Cardoso, Telma Lança, Ana Rita Grosso, Ana deBarros, Leila R. Martins, João T. Barata, Bruno Silva‐Santos
Software Mentions: 2
Published: over 17 years ago

10.1371/journal.pone.0235852

Astrocytes influence medulloblastoma phenotypes and CD133 surface expression
Cited by: 8
Author(s): Emily Gronseth, Ankan Gupta, Chris Koceja, Suresh Kumar, Raman G. Kutty, Kevin R. Rarick, Ling Wang, Ramani Ramchandran
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0042161

Identification of Pluripotent and Adult Stem Cell Genes Unrelated to Cell Cycle and Associated with Poor Prognosis in Multiple Myeloma
Cited by: 18
Author(s): Alboukadel Kassambara, Dirk Hose, Jérôme Moreaux, Thierry Rème, Jennifer Torrent, Jean François Rossi, Hartmut Goldschmidt, Bernard Klein
Software Mentions: 2
Published: about 14 years ago

Projects: bioconductor: ArrayExpress

Science Score: 83/100

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Papers Mentioning ArrayExpress 1,962