bioconductor: ArrayExpress | Projects

10.1371/journal.pone.0109978

Life without Oxygen: Gene Regulatory Responses of the Crucian Carp (Carassius carassius) Heart Subjected to Chronic Anoxia
Cited by: 11
Author(s): Kåre‐Olav Stensløkken, Stian Ellefsen, Olga Vasieva, Yongxiang Fang, Anthony P. Farrell, Lisa Olohan, Jarle Vaage, Göran Nilsson, Andrew R. Cossins
Software Mentions: 1
Published: over 11 years ago

10.1038/s41380-019-0505-2

Familial t(1;11) translocation is associated with disruption of white matter structural integrity and oligodendrocyte–myelin dysfunction
Cited by: 17
Author(s): Navneet A. Vasistha, Mandy Johnstone, Samantha K. Barton, Steffen Mayerl, Bhuvaneish T. Selvaraj, Pippa A. Thomson, Owen Dando, Ellen Grünewald, Clara Alloza, Mark E. Bastin, Matthew R. Livesey, Kyriakos D. Economides, Dario Magnani, Paraskevi Makedonopolou, Karen Burr, David Story, Douglas Blackwood, DJ Wyllie, Andrew M. McIntosh, J. Kirsty Millar, Charles ffrench‐Constant, Giles E. Hardingham, Stephen M. Lawrie, Siddharthan Chandran
Software Mentions: 1
Published: almost 7 years ago

10.1002/1878-0261.12894

Multiomics integrative analysis reveals antagonistic roles of CBX2 and CBX7 in metabolic reprogramming of breast cancer
Cited by: 17
Author(s): Mohammad Askandar Iqbal, Shumaila Siddiqui, Asad Ur Rehman, Farid Ahmad Siddiqui, Prithvi Singh, Bhupender Kumar, Daman Saluja
Software Mentions: 1
Published: over 5 years ago

10.1111/mmi.13091

Deciphering the metabolic response of <scp> M </scp> ycobacterium tuberculosis to nitrogen stress
Cited by: 33
Author(s): Katrina Williams, Victoria A Jenkins, Geraint Barton, William A Bryant, Nitya Krishnan, Brian Robertson
Software Mentions: 1
Published: almost 11 years ago

10.7150/jca.34693

Distinct Roles of VEGFA and ANGPT2 in Lung Adenocarcinoma and Squamous Cell Carcinoma
Cited by: 20
Author(s): Shuang Qin, Ming Yi, Dechao Jiao, An‐Ping Li, Zeyu Wu
Software Mentions: 1
Published: over 6 years ago

10.1111/mmi.12358

Induced ectopic expression of <scp>HigB</scp> toxin in <scp>M</scp>ycobacterium tuberculosis results in growth inhibition, reduced abundance of a subset of <scp>mRNAs</scp> and cleavage of <scp>tmRNA</scp>
Cited by: 46
Author(s): Dorothée L. Schuessler, Teresa Cortes, Amanda S. Fivian‐Hughes, Kathryn Lougheed, Evelyn Harvey, Roger S. Buxton, E. A. Davis, Douglas B. Young
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2407-13-184

Expressional alterations in functional ultra-conserved non-coding rnas in response to all-transretinoic acid - induced differentiation in neuroblastoma cells
Cited by: 34
Author(s): Karen M. Watters, Kenneth Bryan, Niamh H. Foley, Maria Meehan, Raymond L. Stallings
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0053478

Genome-Wide Alteration of Histone H3K9 Acetylation Pattern in Mouse Offspring Prenatally Exposed to Arsenic
Cited by: 83
Author(s): Andrea A. Cronican, Nicholas F. Fitz, Alexis B. Carter, Muzamil Saleem, Sruti Shiva, Aaron Barchowsky, Radosveta Koldamova, Jonathan Schug, Iliya Lefterov
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0109745

Mg2+ Effect on Argonaute and RNA Duplex by Molecular Dynamics and Bioinformatics Implications
Cited by: 9
Author(s): Seungyoon Nam, Hyojung Ryu, Won Son, Yon Hui Kim, Young Ho Kim, Curt Balch, Kenneth P. Nephew, Jinhyuk Lee
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2407-14-871

Estrogen independent gene expression defines clinically relevant subgroups of estrogen receptor positive breast cancer
Cited by: 4
Author(s): Robin Hallett, John A. Hassell
Software Mentions: 1
Published: over 11 years ago

10.1111/mmi.12381

Genome‐wide profiling of chromosome interactions in <scp>P</scp> lasmodium falciparum characterizes nuclear architecture and reconfigurations associated with antigenic variation
Cited by: 47
Author(s): Jacob E. Lemieux, Sue Kyes, Thomas D. Otto, Avi Feller, Richard T. Eastman, Robert Pinches, Matthew Berriman, Xin‐zhuan Su, Chris Newbold
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0181231

CSmiRTar: Condition-Specific microRNA targets database
Cited by: 20
Author(s): Wei Wu, Bor Wen Tu, Tsung Te Chen, Shang Wei Hou, Joseph T. Tseng
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2407-10-176

Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells
Cited by: 12
Author(s): Michael St.Pierre, Benoît DeHertogh, Anthoula Gaigneaux, Bertrand DeMeulder, Fabrice Berger, Eric Bareke, Carine Michiels, Eric Depiereux
Software Mentions: 1
Published: about 16 years ago

10.1016/j.mcpro.2021.100071

Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future
Cited by: 21
Author(s): Nuno Bandeira, Eric W. Deutsch, Oliver Kohlbacher, Lennart Martens, Juan Antonio Vizcaíno
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0054717

Global Transcriptional Profiling of Longitudinal Clinical Isolates of Mycobacterium tuberculosis Exhibiting Rapid Accumulation of Drug Resistance
Cited by: 43
Author(s): Anirvan Chatterjee, Dhananjaya Saranath, Purva Bhatter, Nerges Mistry
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0089318

Global Meta-Analysis of Transcriptomics Studies
Cited by: 11
Author(s): José Caldas, Susana Vinga
Software Mentions: 1
Published: over 12 years ago

10.1111/jcmm.13023

Reduced angiogenic gene expression in morbillivirus‐triggered oncolysis in a translational model for histiocytic sarcoma
Cited by: 24
Author(s): Vanessa Maria Pfankuche, Ingo Spitzbarth, Stefanie Lapp, Reiner Ulrich, Ulrich Deschl, Arno Kalkuhl, Wolfgang Baumgärtner, Christina Puff
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0037646

Stromal Genes Add Prognostic Information to Proliferation and Histoclinical Markers: A Basis for the Next Generation of Breast Cancer Gene Signatures
Cited by: 17
Author(s): Dwain Mefford, Joel Mefford
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0084428

DACH1: Its Role as a Classifier of Long Term Good Prognosis in Luminal Breast Cancer
Cited by: 24
Author(s): Desmond G. Powe, Gopal Krishna Dhondalay, Christophe Lemetre, Tony Allen, Hany Onsy Habashy, Ian O. Ellis, Robert C. Rees, Graham Ball
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0067802

Insulin Receptor-Overexpressing β-Cells Ameliorate Hyperglycemia in Diabetic Rats through Wnt Signaling Activation
Cited by: 14
Author(s): Mi‐Hyun Kim, Seung-Hyun Hong, Moon‐Kyu Lee
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0006576

Genome-Scale Identification Method Applied to Find Cryptic Aminoglycoside Resistance Genes in Pseudomonas aeruginosa
Cited by: 17
Author(s): Julie M. Struble, Ryan T. Gill
Software Mentions: 1
Published: over 16 years ago

10.1111/jcmm.13051

Acquired TET 2 mutation in one patient with familial platelet disorder with predisposition to AML led to the development of pre‐leukaemic clone resulting in T2‐ ALL and AML ‐M0
Cited by: 10
Author(s): Vladimir T. Manchev, Hind Bouzid, Iléana Antony-Debré, Betty Leite, Guillaume Meurice, Nathalie Droin, Thomas Prébet, Régis Costello, William Vainchenker, Isabelle Plo, M’Boyba Diop, Elizabeth Macintyre, Vahid Asnafi, Rémi Favier, Véronique Baccini, Hana Raslová
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0006554

Genome-Wide Profile of Pleural Mesothelioma versus Parietal and Visceral Pleura: The Emerging Gene Portrait of the Mesothelioma Phenotype
Cited by: 63
Author(s): Oluf Dimitri Røe, Endre Anderssen, E. Helge, Caroline Hild Pettersen, Anja Olsen, Helmut Sandeck, Rune Haaverstad, Steinar Lundgren, Erik G. Larsson
Software Mentions: 1
Published: almost 17 years ago

10.18632/aging.101078

Human exceptional longevity: transcriptome from centenarians is distinct from septuagenarians and reveals a role of Bcl-xL in successful aging
Cited by: 37
Author(s): Consuelo Borrás, Kheira M. Abdelaziz, Juan Gambini, Eva Serna, Marta Inglés, Mónica De la Fuente, Idoia García, Ander Matheu, Paula Sanchís, Ángel Belenguer, Alessandra Errigo, Juan A. Avellana, Ana Barettino, Carla Lloret-Fernández, Nuria Flames, Giovanni Mario Pes, Leocadio Rodríguez‐Mañas, José Viña
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2407-10-482

Differential detection of alternatively spliced variants of Ciz1 in normal and cancer cells using a custom exon-junction microarray
Cited by: 22
Author(s): Faisal Rahman, Naveed Aziz, Dawn Coverley
Software Mentions: 1
Published: almost 16 years ago

10.1186/ar3062

New insights into the pathogenesis of glucocorticoid-induced avascular necrosis: microarray analysis of gene expression in a rat model
Cited by: 47
Author(s): Mohammad Amin Kerachian, Denis Cournoyer, Edward J. Harvey, Terry Y.-K. Chow, Louis R. Bégin, Ayoub Nahal, Chantal Séguin
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2407-12-608

Molecular pathways undergoing dramatic transcriptomic changes during tumor development in the human colon
Cited by: 16
Author(s): Rosalia Maglietta, Vania C. Liuzzi, Elisa Cattaneo, Endre Laczkó, Ada Piepoli, Anna Panza, Massimo Carella, Orazio Palumbo, Teresa Staiano, Federico Buffoli, Angelo Andriulli, Giancarlo Marra, Nicola Ancona
Software Mentions: 1
Published: over 13 years ago

10.1172/JCI129115

Zeb1 modulates hematopoietic stem cell fates required for suppressing acute myeloid leukemia
Cited by: 29
Author(s): Alhomidi Almotiri, Hamed Ahmad A. Alzahrani, Juan Bautista Menendez-Gonzalez, Ali Abdelfattah, Badi Alotaibi, Lubaid Saleh, Adelle Greene, Mia R. F. Georgiou, Alex Gibbs, Amani Salem Alsayari, Sarab Taha, Leigh-anne Thomas, Dhruv Shah, Sarah Edkins, Peter Giles, Marc P. Stemmler, Simone Brabletz, Thomas Brabletz, Ashleigh S. Boyd, Florian A. Siebzehnrübl, Neil P. Rodrigues
Software Mentions: 1
Published: over 5 years ago

10.1371/annotation/121b04a1-0cbb-4e24-8a63-fc9cdd31ec76

Correction: Klf4 Is a Transcriptional Regulator of Genes Critical for EMT, Including Jnk1 (Mapk8)
Cited by: 24
Author(s): Neha Tiwari, Nathalie Meyer-Schaller, Phil Arnold, Helena Antoniadis, Mikhail Pachkov, Erik van Nimwegen, Gerhard Christofori
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0218934

Ticagrelor induces paraoxonase-1 (PON1) and better protects hypercholesterolemic mice against atherosclerosis compared to clopidogrel
Cited by: 10
Author(s): Hasseri Halim, Decha Pinkaew, Preedakorn Chunhacha, Patuma Sinthujaroen, Perumal Thiagarajan, Kenichi Fujise
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0065034

Cholecalciferol (Vitamin D3) Improves Myelination and Recovery after Nerve Injury
Cited by: 102
Author(s): Jean-François Chabas, Delphine Stephan, Tanguy Marqueste, Stéphane García, Marie‐Noëlle Lavaut, Catherine Nguyen, R. Legré, Michel Khrestchatisky, Patrick Decherchi, François Féron
Software Mentions: 1
Published: about 13 years ago

10.1016/j.molcel.2007.03.002

A Network of Multiple Regulatory Layers Shapes Gene Expression in Fission Yeast
Cited by: 188
Author(s): Daniel H. Lackner, Traude H. Beilharz, Samuel Marguerat, Juan Mata, Stephen Watt, Falk Schubert, Thomas Preiß, Jürg Bähler
Software Mentions: 1
Published: about 19 years ago

10.1186/1471-2407-8-18

Expression profiling to predict the clinical behaviour of ovarian cancer fails independent evaluation
Cited by: 11
Author(s): Olivier Gevaert, Frank De Smet, Toon Van Gorp, Nathalie Pochet, Kristof Engelen, Frédéric Amant, Bart De Moor, Dirk Timmerman, Ignace Vergote
Software Mentions: 1
Published: over 18 years ago

10.1093/jxb/ert337

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family
Cited by: 109
Author(s): Selahattin Danisman, Aalt D. J. van Dijk, Andrea Bimbó, Froukje van der Wal, Lars Hennig, Stefan de Folter, Gerco C. Angenent, Richard G. H. Immink
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0030269

Angiogenic mRNA and microRNA Gene Expression Signature Predicts a Novel Subtype of Serous Ovarian Cancer
Cited by: 99
Author(s): Stefan Bentink, Benjamin Haibe‐Kains, Thomas S. Risch, Jian–Bing Fan, Michelle S. Hirsch, Kristina M. Holton, Renee Rubio, Craig April, Jing Chen, Eliza Wickham-Garcia, Joyce F. Liu, Aedín C. Culhane, Ronny Drapkin, John Quackenbush, Ursula A. Matulonis
Software Mentions: 1
Published: over 14 years ago

10.1186/s12943-017-0717-5

Phospholipid Phosphatase 4 promotes proliferation and tumorigenesis, and activates Ca2+-permeable Cationic Channel in lung carcinoma cells
Cited by: 55
Author(s): Xin Zhang, Lan Zhang, Bihua Lin, Xingxing Chai, Ronggang Li, Yuehua Liao, Xing-Hui Deng, Qiongru Liu, Wenli Yang, Yubo Cai, Wei Zhou, Zhichao Lin, Wenhai Huang, Meigong Zhong, Fangyong Lei, Jiangxue Wu, Shuaishuai Yu, Xiaoping Li, Shangren Li, Yueyue Li, Jincheng Zeng, Wansheng Long, Dong Ren, Yanming Huang
Software Mentions: 1
Published: almost 9 years ago

10.1186/1476-4598-13-20

Oncogenic transformation of mesenchymal stem cells decreases Nrf2 expression favoring in vivo tumor growth and poorer survival
Cited by: 36
Author(s): Juan M. Funes, Stephen Henderson, Rachel Kaufman, James M. Flanagan, Mathew Robson, R. Barbara Pedley, Salvador Moncada, Chris Boshoff
Software Mentions: 1
Published: over 12 years ago

10.1093/jxb/ert397

Overexpression ofPYL5in rice enhances drought tolerance, inhibits growth, and modulates gene expression
Cited by: 178
Author(s): Hyun-Mi Kim, Kyeyoon Lee, Hyunsik Hwang, Nikita Bhatnagar, Dool Yi Kim, In Sun Yoon, Myung-Ok Byun, Sun Tae Kim, Ki‐Hong Jung, Beom-Gi Kim
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2407-9-409

Impact of biospecimens handling on biomarker research in breast cancer
Cited by: 84
Author(s): Loris De Cecco, Valeria Musella, Silvia Veneroni, Vera Cappelletti, Italia Bongarzone, Maurizio Callari, Barbara Valeri, Marco A. Pierotti, Maria Grazia Daidone
Software Mentions: 1
Published: over 16 years ago

10.1016/j.kint.2018.11.040

Lrig2 and Hpse2, mutated in urofacial syndrome, pattern nerves in the urinary bladder
Cited by: 25
Author(s): Neil Roberts, Emma Hilton, Filipa Lopes, Subir Singh, Michael J. Randles, Natalie J. Gardiner, Karl Chopra, Riccardo Coletta, Zunera Bajwa, Robert J. Hall, Wyatt W. Yue, Franz Schaefer, Stefanie Weber, Roger Henriksson, Helen M. Stuart, Håkan Hedman, William G. Newman, Adrian S. Woolf
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms22126505

Screen Key Genes Associated with Distraction-Induced Osteogenesis of Stem Cells Using Bioinformatics Methods
Cited by: 2
Author(s): Jishizhan Chen, Jia Hua, Wenhui Song
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1000066

The Uptake of Apoptotic Cells Drives Coxiella burnetii Replication and Macrophage Polarization: A Model for Q Fever Endocarditis
Cited by: 49
Author(s): Marie Benoit, Éric Ghigo, Christian Capo, Didier Raoult, Jean‐Louis Mège
Software Mentions: 1
Published: about 18 years ago

10.1186/1476-4598-9-88

Organ-, inflammation- and cancer specific transcriptional fingerprints of pancreatic and hepatic stellate cells
Cited by: 90
Author(s): Mert Erkan, Nadine Weis, Pan Zheng, Christian Schwager, Tamar Samkharadze, Xiaohua Jiang, Ute Wirkner, Nathalia A. Giese, Wilhelm Ansorge, Jürgen Debus, Peter E. Huber, Helmut Friess, Amir Abdollahi, Jörg Kleeff
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0134866

Transcriptomic Profiling of Virus-Host Cell Interactions following Chicken Anaemia Virus (CAV) Infection in an In Vivo Model
Cited by: 19
Author(s): Efstathios S. Giotis, Lisa Rothwell, Alistair Scott, Tuanjun Hu, Richard Talbot, D. Todd, David W. Burt, Elizabeth J. Glass, Pete Kaiser
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0053391

Characterization of the Humoral Immune Response during Staphylococcus aureus Bacteremia and Global Gene Expression by Staphylococcus aureus in Human Blood
Cited by: 69
Author(s): P. Martijn den Reijer, Nicole Lemmens-den Toom, Samantha Kant, Susan V. Snijders, Hélène Boelens, Mehri Tavakol, Nelianne J. Verkaik, Alex van Belkum, Henri A. Verbrugh, Willem J. B. van Wamel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0093175

Renal Tissue Thawed for 30 Minutes Is Still Suitable for Gene Expression Analysis
Cited by: 5
Author(s): Yi Ma, Xiaonan Kang, Weijun Ding, Haozheng Yang, Ye Wang, Jin Zeng, Yiran Huang, Hongyue Dai
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0152997

Overexpression and Biological Function of Ubiquitin-Specific Protease 42 in Gastric Cancer
Cited by: 19
Author(s): Kezuo Hou, Zhihua Zhu, Yong Wang, Chunhui Zhang, Shanshan Yu, Qingqing Zhu, Bo Yan
Software Mentions: 1
Published: about 10 years ago

10.1186/1476-4598-9-123

MicroRNAs involvement in fludarabine refractory chronic lymphocytic leukemia
Cited by: 98
Author(s): Manuela Ferracin, Barbara Zagatti, Lara Rizzotto, Francesco Cavazzini, Angelo Veronese, Maria Ciccone, Elena Saccenti, Laura Lupini, Andrea Grilli, Cristiano De Angeli, Massimo Negrini, Antonio Cuneo
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0040538

Temporal Profiling of Gene Networks Associated with the Late Phase of Long-Term Potentiation In Vivo
Cited by: 50
Author(s): Margaret M. Ryan, Brigid Ryan, Madeleine Kyrke-Smith, Barbara Logan, Warren P. Tate, Wickliffe C. Abraham, Joanna M. Williams
Software Mentions: 1
Published: almost 14 years ago

10.1186/1756-6606-6-12

Synaptosomal-associated protein 25 mutation induces immaturity of the dentate granule cells of adult mice
Cited by: 51
Author(s): Koji Ohira, Katsunori Kobayashi, Keiko Toyama, Hironori Nakamura, Hirotaka Shoji, Keizo Takao, Rika Takeuchi, Shun Yamaguchi, Masakazu Kataoka, Shintaro Otsuka, Masami Takahashi, Tsuyoshi Miyakawa
Software Mentions: 1
Published: over 13 years ago

10.1093/molbev/msu299

Expression Profile and Gene Age Jointly Shaped the Genome-Wide Distribution of Premature Termination Codons in a Drosophila melanogaster Population
Cited by: 19
Author(s): Haiwang Yang, Bin He, Huijing Ma, Shun-Chern Tsaur, Chenyu Ma, Ying Wu, Chau‐Ti Ting, Yong E. Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/1479-5876-9-72

SULFs in human neoplasia: implication as progression and prognosis factors
Cited by: 68
Author(s): Caroline Bret, Jérôme Moreaux, Jean‐François Schved, Dirk Hose, Bernard Klein
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0187920

Insights into soybean transcriptome reconfiguration under hypoxic stress: Functional, regulatory, structural, and compositional characterization
Cited by: 15
Author(s): Thiago Jonas Nakayama, Fabiana Aparecida Rodrigues, N. Neumaier, Juliana Marcolino-Gomes, Hugo Bruno Correa Molinari, Thaís Ribeiro Santiago, Eduardo Fernandes Formighieri, Marcos Fernando Basso, J. R. B. Farias, Beatriz Marti Emygdio, A. Oliveira, Ângela Diniz Campos, Aluízio Borém, Frank G. Harmon, L. M. Mertz-Henning, Alexandre Lima Nepomuceno
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0008408

Expression Profiling the Temperature-Dependent Amphibian Response to Infection by Batrachochytrium dendrobatidis
Cited by: 144
Author(s): Laia Ribas, Mingshi Li, Benjamin J. Doddington, Jacques Robert, Judith A. Seidel, J. Simon Kroll, Lyle B. Zimmerman, Nicholas C Grassly, Trenton W. J. Garner, Matthew C. Fisher
Software Mentions: 1
Published: over 16 years ago

10.1186/2040-2392-5-21

Altered brain gene expression but not steroid biochemistry in a genetic mouse model of neurodevelopmental disorder
Cited by: 20
Author(s): Simon Trent, JP Fry, Obah A. Ojarikre, William Davies
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0026985

Transcriptomics Responses in Marine Diatom Thalassiosira pseudonana Exposed to the Polycyclic Aromatic Hydrocarbon Benzo[a]pyrene
Cited by: 51
Author(s): Ralph Carvalho, Stephanie K. Bopp, Teresa Lettieri
Software Mentions: 1
Published: over 14 years ago

10.3390/ijms21061941

Fighting Against Promoter DNA Hyper-Methylation: Protective Histone Modification Profiles of Stress-Resistant Intestinal Stem Cells
Cited by: 1
Author(s): Torsten Thalheim, Lydia Hopp, Maria Herberg, Susann Siebert, Christiane Kerner, Marianne Quaas, Michal R. Schweiger, Gabriela Aust, Joerg Galle
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.673073

MeiosisOnline: A Manually Curated Database for Tracking and Predicting Genes Associated With Meiosis
Cited by: 4
Author(s): Xiaohua Jiang, Dingtao Zhao, Asim Ali, Bo Xu, Wei Liu, Jie Wen, Huan Zhang, Qinghua Shi, Yuanwei Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2021.716501

GADD45B Is a Potential Diagnostic and Therapeutic Target Gene in Chemotherapy-Resistant Prostate Cancer
Cited by: 4
Author(s): Qiong Wang, Wanhua Wu, Zhe Gao, Kaiwen Li, Shirong Peng, Huiyang Fan, Zhongqiu Xie, Zhanfang Guo, Hai Huang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2014.00470

A gene mapping bottleneck in the translational route from zebrafish to human
Cited by: 2
Author(s): Nigel Klein, Mark Ibberson, Isaac Crespo, Sophie Rodius, Francisco Azuaje
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2019.00769

Inferring Latent Disease-lncRNA Associations by Faster Matrix Completion on a Heterogeneous Network
Cited by: 14
Author(s): Li Wen, Shulin Wang, Junlin Xu, Guo Mao, Geng Tian, Jialiang Yang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2014.00191

Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria
Cited by: 19
Author(s): Miguel A. Hernández‐Prieto, T. A. Semeniuk, Matthias E. Futschik
Software Mentions: 1
Published: almost 12 years ago

10.3389/fgene.2018.00125

Integrated Quantitative Transcriptome Maps of Human Trisomy 21 Tissues and Cells
Cited by: 32
Author(s): Maria Chiara Pelleri, Chiara Cattani, Lorenza Vitale, Francesca Antonaros, Pierluigi Strippoli, Chiara Locatelli, Guido Cocchi, Allison Piovesan, Maria Caracausi
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2014.00206

Evolutionary analysis of the cystatin family in three Schistosoma species
Cited by: 13
Author(s): Yesid Cuesta-Astroz, Larissa Lopes Silva Scholte, Fabiano Sviatopolk-Mirsky Pais, Guilherme Oliveira, Laila Alves Nahum
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2013.00353

MicroRNA-Mediated Down-Regulation of M-CSF Receptor Contributes to Maturation of Mouse Monocyte-Derived Dendritic Cells
Cited by: 28
Author(s): Joey Riepsaame, A. Van Oudenaren, Berlinda J. H. den Broeder, Wilfred F. J. van IJcken, Joris Pothof, Pieter J. M. Leenen
Software Mentions: 1
Published: over 13 years ago

10.3389/fimmu.2021.653110

Endothelial Immunity Trained by Coronavirus Infections, DAMP Stimulations and Regulated by Anti-Oxidant NRF2 May Contribute to Inflammations, Myelopoiesis, COVID-19 Cytokine Storms and Thromboembolism
Cited by: 37
Author(s): Ying Shao, Jason Saredy, Keman Xu, Yu Sun, Fatma Saaoud, Charles Drummer, Yifan Lu, Jin Jun Luo, Jahaira Lopez-Pastraña, Eric T. Choi, Xiaohua Jiang, Hong Wang, Xiaofeng Yang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.631044

An Immunological Perspective: What Happened to Pregnant Women After Recovering From COVID-19?
Cited by: 12
Author(s): Sijia Zhao, Ting Xie, Li Shen, Hong Liu, Liling Wang, Xixiang Ma, Jiankang Wu, Shuiqiao Yuan, Gil Mor, Aihua Liao
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2018.01425

Chromatin Binding of c-REL and p65 Is Not Limiting for Macrophage IL12B Transcription During Immediate Suppression by Ovarian Carcinoma Ascites
Cited by: 11
Author(s): Annika Unger, Florian Finkernagel, Nathalie Hoffmann, Felix Neuhaus, Barbara Joos, Andrea Nist, Thorsten Stiewe, Alexander Visekruna, Uwe Wagner, Silke Reinartz, Sabine Müller‐Brüsselbach, Rolf Müller, Till Adhikary
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2016.00272

Transcriptome Analysis of B Cell Immune Functions in Periodontitis: Mucosal Tissue Responses to the Oral Microbiome in Aging
Cited by: 22
Author(s): Jeffrey L. Ebersole, Sreenatha Kirakodu, M. John Novak, Luis Orraca, Janis Gonzalez Martinez, Larry L. Cunningham, Mark V. Thomas, Arnold J. Stromberg, Subramanya Pandruvada, Octavio A. González
Software Mentions: 1
Published: almost 10 years ago

10.3389/fimmu.2018.00032

Induction of Short NFATc1/αA Isoform Interferes with Peripheral B Cell Differentiation
Cited by: 4
Author(s): Khalid Muhammad, Ronald Rudolf, Duong Anh Thuy Pham, Stefan Klein-Heßling, Katsuyoshi Takata, Nobuko Matsushita, Volker Ellenrieder, Eisaku Kondo, Edgar Serfling
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2017.00479

Co-Inflammatory Roles of TGFβ1 in the Presence of TNFα Drive a Pro-inflammatory Fate in Mesenchymal Stem Cells
Cited by: 25
Author(s): Shalom Lerrer, Yulia Liubomirski, Alexander Bott, Khalid Abnaof, Nino Oren, Afsheen Yousaf, Cindy Körner, Tsipi Meshel, Stefan Wiemann, Adit Ben‐Baruch
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2020.585414

Oral Microbiome and Gingival Tissue Apoptosis and Autophagy Transcriptomics
Cited by: 10
Author(s): Jeffrey L. Ebersole, Sreenatha Kirakodu, Elliot Neumann, Luis Orraca, Janis Gonzalez Martinez, Octavio A. González
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2020.00438

Dual Pro- and Anti-Inflammatory Features of Monocyte-Derived Dendritic Cells
Cited by: 12
Author(s): Waqas Azeem, Ragnhild Maukon Bakke, Silke Appel, Anne Margrete Øyan, Karl‐Henning Kalland
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2020.00380

Development of a Bioinformatics Framework for Identification and Validation of Genomic Biomarkers and Key Immunopathology Processes and Controllers in Infectious and Non-infectious Severe Inflammatory Response Syndrome
Cited by: 14
Author(s): Dong Tong, Karen E. Kempsell, Tamás Szakmány, Graham Ball
Software Mentions: 1
Published: about 6 years ago

10.3389/fmed.2020.527433

Distinct miRNA Gene Expression Profiles Among the Nodule Tissues of Lung Sarcoidosis, Tuberculous Lymphadenitis and Normal Healthy Control Individuals
Cited by: 2
Author(s): Yunan Zhao, Wei Li, Qin Zhang, Yan Yin, Chuanjia Yang, Wen-Xiang Xu, Jian Kang, Ruiqun Qi, Gang Hou
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01157

Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus
Cited by: 13
Author(s): Minh Thu Nguyen, Jongkon Saising, Paula María Tribelli, Mulugeta Nega, Seydina M. Diène, Patrice François, Jacques Schrenzel, Cathrin Spröer, Boyke Bunk, Patrick Ebner, Tobias Hertlein, Nimerta Kumari, Thomas Härtner, Dorothee Wistuba, Supayang Piyawan Voravuthikunchai, Ulrike Mäder, Knut Ohlsen, Friedrich Götz
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2017.02039

A Novel TetR-Like Transcriptional Regulator Is Induced in Acid-Nitrosative Stress and Controls Expression of an Efflux Pump in Mycobacteria
Cited by: 9
Author(s): Filomena Perrone, Barbara De Siena, Lidia Muscariello, Sharon L. Kendall, Simon J. Waddell, Margherita Sacco
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.00759

The Chromatin of Candida albicans Pericentromeres Bears Features of Both Euchromatin and Heterochromatin
Cited by: 13
Author(s): Verónica Freire-Benéitez, R. Jordan Price, Alessia Buscaino
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2018.01952

Coumarin Reduces Virulence and Biofilm Formation in Pseudomonas aeruginosa by Affecting Quorum Sensing, Type III Secretion and C-di-GMP Levels
Cited by: 53
Author(s): Yunhui Zhang, Andrea Saß, Heleen Van Acker, Jasper Wille, Bruno Verhasselt, Filip Van Nieuwerburgh, Volkhard Kaever, Aurélie Crabbé, Tom Coenye
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2018.00763

An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA
Cited by: 12
Author(s): Marta Garrido, Jan-Philip Schlüter, Lars O. Loehr, Uwe Linne, Stefan P. Albaum, Josè I. Jiménez-Zurdo, Anke Becker
Software Mentions: 1
Published: about 8 years ago

10.3389/fninf.2014.00051

Allen Brain Atlas-Driven Visualizations: a web-based gene expression energy visualization tool
Cited by: 11
Author(s): Andrew Zaldivar, Jeffrey L. Krichmar
Software Mentions: 1
Published: about 12 years ago

10.3389/fonc.2019.01515

CXCL1 as an Unfavorable Prognosis Factor Negatively Regulated by DACH1 in Non-small Cell Lung Cancer
Cited by: 24
Author(s): Shengnan Yu, Ming Yi, Lei Xu, Shuang Qin, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2017.00332

Human Epididymis Protein 4 Promotes Events Associated with Metastatic Ovarian Cancer via Regulation of the Extracelluar Matrix
Cited by: 19
Author(s): Jennifer Ribeiro, Hilary Gaudet, Mehreen Ali Khan, Christoph Schorl, Nicole James, M. Oliver, Paul DiSilvestro, Richard G. Moore, Naohiro Yano
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2019.00026

EYA2 Correlates With Clinico-Pathological Features of Breast Cancer, Promotes Tumor Proliferation, and Predicts Poor Survival
Cited by: 16
Author(s): Hanxiao Xu, Yanmei Jiao, Ming Yi, Wei Zhao, Zeyu Wu
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2021.605884

Exosomal LncRNA LBX1-AS1 Derived From RBPJ Overexpressed-Macrophages Inhibits Oral Squamous Cell Carcinoma Progress via miR-182-5p/FOXO3
Cited by: 17
Author(s): Yilong Ai, Haigang Wei, Si-Pei Wu, Zhe Tang, Xia Li, Chen Zou
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2020.00044

Clinical Significance of Circulating miR-1273g-3p and miR-122-5p in Pancreatic Cancer
Cited by: 19
Author(s): Tommaso Mazza, Domenica Gioffreda, Andrea Fontana, Tommaso Biagini, Massimo Carella, Orazio Palumbo, Evaristo Maiello, Francesca Bazzocchi, Angelo Andriulli, Francesca Tavano
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2020.00068

Comprehensive Review of Web Servers and Bioinformatics Tools for Cancer Prognosis Analysis
Cited by: 70
Author(s): Hong Zheng, Guosen Zhang, Lu Zhang, Qiang Wang, Huimin Li, Yali Han, Longxiang Xie, Zhongyi Yan, Yongqiang Li, Yang An, H. Dong, Wan Zhu, Xiangqian Guo
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2019.00145

Spheroid-Induced Epithelial-Mesenchymal Transition Provokes Global Alterations of Breast Cancer Lipidome: A Multi-Layered Omics Analysis
Cited by: 29
Author(s): Yun Pyo Kang, Jung-ho Yoon, Nguyen Phuoc Long, Gi‐Bang Koo, Hyunjin Noh, Seung-Jae Oh, Sae Bom Lee, Hyung Min Kim, Ji Yeon Hong, Wonjun Lee, Seul Ji Lee, Soon‐Sun Hong, Sung Won Kwon, You‐Sun Kim
Software Mentions: 1
Published: about 7 years ago

10.3389/fphar.2018.00847

UBE2C Is a Potential Biomarker of Intestinal-Type Gastric Cancer With Chromosomal Instability
Cited by: 43
Author(s): Jun Zhang, Xinyu Liu, Guanzhen Yu, Lei Liu, Jiejun Wang, Xiaoyu Chen, Yuhai Bian, Yuan Ji, Xiaoyan Zhou, Yinan Chen, Jun Ji, Zhen Xiang, Li Guo, Jing‐Yuan Fang, Yihong Sun, Hui Cao, Zhenggang Zhu, Yingyan Yu
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphar.2017.00563

Transcriptome Profiling in Systems Vascular Medicine
Cited by: 22
Author(s): Suowen Xu
Software Mentions: 1
Published: almost 9 years ago

10.3389/fphar.2020.00533

Cyclooxygenase 2-Regulated Genes an Alternative Avenue to the Development of New Therapeutic Drugs for Colorectal Cancer
Cited by: 17
Author(s): Alicia M. Hidalgo-Estévez, Konstantinos Stamatakis, Marta Jiménez-Martínez, Ricardo López‐Pérez, Manuel Fresno
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2018.00937

Blood Gene Expression and Vascular Function Biomarkers in Professional Saturation Diving
Cited by: 15
Author(s): Fatima Zohra Kiboub, Andreas Møllerløkken, Astrid Hjelde, Arnar Flatberg, Øyvind Loennechen, Ingrid Eftedal
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2019.00474

Mitochondrial Adaptations in Elderly and Young Men Skeletal Muscle Following 2 Weeks of Bed Rest and Rehabilitation
Cited by: 30
Author(s): Alessia Buso, Marina Comelli, Raffaella Picco, Miriam Isola, Benedetta Magnesa, Rado Pišot, Jörn Rittweger, Desy Salvadego, Boštjan Šimunič, Bruno Grassi, Irene Mavelli
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.640324

Identification and Characterization of Perennial Ryegrass (Lolium perenne) Vernalization Genes
Cited by: 2
Author(s): Rowan P. Herridge, * Samarth, Lynette Brownfield, Richard C. Macknight
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.00753

Light Regulation of Chlorophyll and Glycoalkaloid Biosynthesis During Tuber Greening of Potato S. tuberosum
Cited by: 12
Author(s): Haruko Okamoto, Laurence J. M. Ducreux, J. William Allwood, Pete E. Hedley, Alison J. Wright, Vidyanath Gururajan, Matthew J. Terry, Mark A. Taylor
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.01836

An LRR/Malectin Receptor-Like Kinase Mediates Resistance to Non-adapted and Adapted Powdery Mildew Fungi in Barley and Wheat
Cited by: 39
Author(s): Jeyaraman Rajaraman, Dimitar Douchkov, Goetz Hensel, Francesca L. Stefanato, Anna Gordon, Nelzo C. Ereful, Octav Caldararu, Andrei-José Petrescu, Jochen Kumlehn, Lesley A. Boyd, Patrick Schweizer
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2017.00445

Altered Expression of Genes Implicated in Xylan Biosynthesis Affects Penetration Resistance against Powdery Mildew
Cited by: 22
Author(s): Jamil Chowdhury, Stefanie Lück, Jeyaraman Rajaraman, Dimitar Douchkov, Neil J. Shirley, Julian G. Schwerdt, Patrick Schweizer, Geoffrey B. Fincher, Rachel A. Burton, Alan Little
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2017.02158

Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant
Cited by: 25
Author(s): Sven K. Nelson, Tohru Ariizumi, Camille M. Steber
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2020.00098

BarleyNet: A Network-Based Functional Omics Analysis Server for Cultivated Barley, Hordeum vulgare L.
Cited by: 15
Author(s): Sungho Lee, Tak H. Lee, Sunmo Yang, Insuk Lee
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2016.00903

Mining Functional Modules in Heterogeneous Biological Networks Using Multiplex PageRank Approach
Cited by: 11
Author(s): Jun Li, Patrick Xuechun Zhao
Software Mentions: 1
Published: almost 10 years ago

Projects: bioconductor: ArrayExpress

Science Score: 83/100

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Papers Mentioning ArrayExpress 1,962