bioconductor: ArrayExpress | Projects

10.1093/hmg/ddw417

Mapping eQTLs with RNA-seq reveals novel susceptibility genes, non-coding RNAs and alternative-splicing events in systemic lupus erythematosus
Cited by: 25
Author(s): Christopher A. Odhams, Andrea Cortini, Lingyan Chen, Amy L. Roberts, Ana Viñuela, Alfonso Buil, Kerrin S. Small, Emmanouil T. Dermitzakis, David L. Morris, Timothy J. Vyse, Deborah S. Cunninghame Graham
Software Mentions: 1
Published: over 9 years ago

10.1186/s13046-016-0403-2

Microarray-based identification of genes associated with cancer progression and prognosis in hepatocellular carcinoma
Cited by: 33
Author(s): Fuqiang Yin, Liuyang Shu, Xia Liu, Ting Li, Tao Peng, Yueli Nan, Shu Li, Xianmin Zeng, Xiaoqiang Qiu
Software Mentions: 1
Published: over 9 years ago

10.1186/s13046-016-0477-x

Nomogram integrating gene expression signatures with clinicopathological features to predict survival in operable NSCLC: a pooled analysis of 2164 patients
Cited by: 18
Author(s): Jianhui Wu, Lizhi Zhou, Lixia Huang, Jincui Gu, Shaoli Li, Baomo Liu, Jinlun Feng, Yunyun Zhou
Software Mentions: 1
Published: over 9 years ago

10.1186/s13046-017-0568-3

miR-500a-3p promotes cancer stem cells properties via STAT3 pathway in human hepatocellular carcinoma
Cited by: 60
Author(s): Chonghe Jiang, Jianting Long, Baoxian Liu, Ming Xu, Wei Wang, Xian-Jin Xie, Xiaolin Wang, Ming Kuang
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-017-0642-x

Drug repurposing for the treatment of glioblastoma multiforme
Cited by: 56
Author(s): Claudia Abbruzzese, Silvia Matteoni, Michele Signore, Luca Cardone, Kavindra Nath, Jerry D. Glickson, Marco G. Paggi
Software Mentions: 1
Published: over 8 years ago

10.1186/s13046-019-1147-6

Anti-CD166/4-1BB chimeric antigen receptor T cell therapy for the treatment of osteosarcoma
Cited by: 42
Author(s): Yitian Wang, Wei Yu, Jian Zhu, Junjie Wang, Kaishun Xia, Chengzhen Liang, Huimin Tao
Software Mentions: 1
Published: almost 7 years ago

10.1002/ijc.25688

Zinc deficiency activates S100A8 inflammation in the absence of COX‐2 and promotes murine oral‐esophageal tumor progression
Cited by: 37
Author(s): Shao Gui Wan, Cristian Taccioli, Yubao Jiang, Hongping Chen, Karl J. Smalley, Kun Huang, Xiu Ping Liu, John L. Farber, Carlo M. Croce, Louise Y.Y. Fong
Software Mentions: 1
Published: over 15 years ago

10.3892/ijmm.2014.2001

Integrative genomic analyses of a novel cytokine, interleukin-34 and its potential role in cancer prediction
Cited by: 30
Author(s): Bo Wang, Wei Xu, Tan Miao-lian, Xin Yan, Haiwei Yang, Tiansong Xia
Software Mentions: 1
Published: over 11 years ago

10.1186/s13045-016-0339-1

The expression profile and clinic significance of the SIX family in non-small cell lung cancer
Cited by: 54
Author(s): Qian Liu, An‐Ping Li, Yijun Tian, Yu Liu, Tengfei Li, Cuntai Zhang, Jennifer D. Wu, Xinwei Han, Kongming Wu
Software Mentions: 1
Published: over 9 years ago

10.1155/2012/984346

Cell Polarity, Epithelial-Mesenchymal Transition, and Cell-Fate Decision Gene Expression in Ductal Carcinoma In Situ
Cited by: 7
Author(s): Danila Coradini, Patrizia Boracchi, Federico Ambrogi, Elia Biganzoli, Saro Oriana
Software Mentions: 1
Published: over 14 years ago

10.1136/jitc-2019-000285

IL-6 promotes PD-L1 expression in monocytes and macrophages by decreasing protein tyrosine phosphatase receptor type O expression in human hepatocellular carcinoma
Cited by: 76
Author(s): Wenjie Zhang, Yang Liu, Zhongyi Yan, Hui Yang, Wei Sun, Yongliang Yao, Yun Chen, Runqiu Jiang
Software Mentions: 1
Published: almost 6 years ago

10.1155/2020/8897936

SCUBE3 Is Likely a Susceptibility Gene for Systemic Lupus Erythematosus for Chinese Populations
Cited by: 2
Author(s): Yuanyuan Qi, Ya-Fei Zhao, Yunkai Zhai, Xiaoxue Zhang, Xiaoyang Wang, Xin-Ran Liu, Caixia Yan, Xianghui Ning, Zhanzheng Zhao
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/9485285

PD-L1 Expression Predicts a Distinct Prognosis in Krukenberg Tumor with Corresponding Origins
Cited by: 10
Author(s): Haiyan Tai, Qin Yang, Zhi‐Yong Wu, Sujuan Sun, Rui Cao, Yanfeng Xi, Ran Zhao, Mengyu Zhang, Zhigang Zhang, Congjian Xu
Software Mentions: 1
Published: over 8 years ago

10.1155/2021/7079359

Association of the PINX1 Variant rs6984094, Which Lengthens Telomeres, with Systemic Lupus Erythematosus Susceptibility in Chinese Populations
Cited by: 2
Author(s): Yuanyuan Qi, Xin-Ran Liu, HE Ying-xin, Min Zhou, Xianghui Ning, Yunkai Zhai, Xiaoxue Zhang, Xiaoyang Wang, Ya-Fei Zhao, Caixia Yan, Zhigang Zhao
Software Mentions: 1
Published: almost 5 years ago

10.1089/omi.2016.0041

Epigenomics of Total Acute Sleep Deprivation in Relation to Genome-Wide DNA Methylation Profiles and RNA Expression
Cited by: 48
Author(s): Emil Nilsson, Adrian Boström, Jessica Mwinyi, Helgi B. Schiöth
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.jmb.2012.10.014

Gene Function Hypotheses for the Campylobacter jejuni Glycome Generated by a Logic-Based Approach
Cited by: 18
Author(s): Michael J.E. Sternberg, Alireza Tamaddoni‐Nezhad, Victor I. Lesk, Emily Kay, Paul G. Hitchen, Adrian P. Cootes, Lieke B. van Alphen, Marc P. Lamoureux, Harold C. Jarrell, Christopher J. Rawlings, Evelyn C. Soo, Christine M. Szymanski, Anne Dell, Brendan W. Wren, Stephen Muggleton
Software Mentions: 1
Published: over 13 years ago

10.1016/j.yjmcc.2019.02.006

The cardiomyocyte “redox rheostat”: Redox signalling via the AMPK-mTOR axis and regulation of gene and protein expression balancing survival and death
Cited by: 25
Author(s): Daniel N. Meijles, Georgia Zoumpoulidou, Thomais Markou, Kerry A Rostron, Rishi Patel, Kenneth Lay, Balvinder S. Handa, Bethany Wong, Peter H. Sugden, Angela Clerk
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.45051

The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity
Cited by: 36
Author(s): Tamara Sirey, Kenny Roberts, Wilfried Haerty, Oscar C. Bedoya-Reina, Sebastian Rogatti-Granados, Jennifer Y. Tan, Nick Li, Lisa C. Heather, Roderick N. Carter, Sarah Cooper, Andrew J. Finch, Jimi Wills, Nicholas M. Morton, Ana C. Marques, Chris P. Ponting
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.69160

GIV/Girdin, a non-receptor modulator for Gαi/s, regulates spatiotemporal signaling during sperm capacitation and is required for male fertility
Cited by: 5
Author(s): Sequoyah Reynoso, Vanessa Castillo, Gajanan D. Katkar, Inmaculada López-Sánchez, Sahar Taheri, Celia R. Espinoza, Cristina C. Rohena, Debashis Sahoo, Pascal Gagneux, Pradipta Ghosh
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.58374

SOX11 promotes epithelial/mesenchymal hybrid state and alters tropism of invasive breast cancer cells
Cited by: 24
Author(s): Erik Oliemuller, Richard Newman, Siu Man Tsang, Shane Foo, Gareth Muirhead, Farzana Noor, Syed Haider, Iskander Aurrekoetxea-Rodríguez, María dM Vivanco, Beatrice A. Howard
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.66865

Metabolic flexibility via mitochondrial BCAA carrier SLC25A44 is required for optimal fever
Cited by: 10
Author(s): Takeshi Yoneshiro, Nobuhiko Kataoka, Jacquelyn M. Walejko, Kenji Ikeda, Zachary D. Brown, Momoko Yoneshiro, Scott B. Crown, Tsuyoshi Osawa, Juro Sakai, Robert W. McGarrah, Phillip J. White, Kazuhiro Nakamura, Shingo Kajimura
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.03743

The transcription factor Pitx2 positions the embryonic axis and regulates twinning
Cited by: 33
Author(s): Angela Torlopp, Mohsin A.F. Khan, Nidia M M Oliveira, Ingrid Lekk, Luz Mayela Soto‐Jiménez, Alona Sosinsky, Claudio D. Stern
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.09886

Protein kinase C coordinates histone H3 phosphorylation and acetylation
Cited by: 13
Author(s): Zoulfia Darieva, Aaron Webber, Stacey Warwood, Andrew D. Sharrocks
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms10083658

Co-Expression of Neighboring Genes in the Zebrafish (Danio rerio) Genome
Cited by: 15
Author(s): Huai-Kuang Tsai, Peiying Huang, Cheng−Yan Kao, Daryi Wang
Software Mentions: 1
Published: over 16 years ago

10.3390/ijms11093397

Practical Application of Toxicogenomics for Profiling Toxicant-Induced Biological Perturbations
Cited by: 21
Author(s): Naoki Kiyosawa, Sunao Manabe, Takashi Yamoto, Atsushi Sanbuissho
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms140611444

Silicon Era of Carbon-Based Life: Application of Genomics and Bioinformatics in Crop Stress Research
Cited by: 6
Author(s): Man-Wah Li, Xiaofeng Qi, Meng Ni, Hon‐Ming Lam
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms151019037

ToxDBScan: Large-Scale Similarity Screening of Toxicological Databases for Drug Candidates
Cited by: 7
Author(s): Michael Roemer, Linus Backert, Johannes Eichner, Andreas Zell
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms19051369

Meta-Analysis and Experimental Validation Identified FREM2 and SPRY1 as New Glioblastoma Marker Candidates
Cited by: 11
Author(s): Marko Vidak, Ivana Jovčevska, Neja Šamec, Alja Zottel, Mirjana Liović, Damjana Rozman, Sašo Džeroski, Peter Juvan, Radovan Komel
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19071967

miR-196a Is Able to Restore the Aggressive Phenotype of Annexin A1 Knock-Out in Pancreatic Cancer Cells by CRISPR/Cas9 Genome Editing
Cited by: 26
Author(s): Raffaella Belvedere, Pasquale Saggese, Emanuela Pessolano, Domenico Memoli, Valentina Bizzarro, Francesca Rizzo, Luca Parente, Alessandro Weisz, Antonello Petrella
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms20133173

Meta-Analysis of Microarray Expression Studies on Metformin in Cancer Cell Lines
Cited by: 8
Author(s): Hans-Juergen Schulten, Sherin Bakhashab
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20215274

The CCR4–NOT Deadenylase Complex Maintains Adipocyte Identity
Cited by: 11
Author(s): Akinori Takahashi, Shohei Takaoka, Shungo Kobori, Tomokazu Yamaguchi, Sara Ferwati, Keiji Kuba, Tadashi Yamamoto, Toru Suzuki
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20225783

Genome-Wide Identification and Characterization of ABC Transporters in Nine Rosaceae Species Identifying MdABCG28 as a Possible Cytokinin Transporter linked to Dwarfing
Cited by: 19
Author(s): Yi Feng, Qiran Sun, Guifen Zhang, Ting Wu, Xinzhong Zhang, Xuefeng Xu, Zhenhai Han, Yi Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-37591-7

Author Correction: Authentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1
Cited by: 1
Author(s): Edwin Garcia, Annette Hayden, Charles N. Birts, Edward Britton, Connor Rogerson, Christopher W. Bleaney, Andrew Cowie, Karen Pickard, Massimiliano Mellone, C Choh, Mathieu Derouet, Patrick J. Duriez, Fergus Noble, Michael J. White, John Primrose, Jonathan C. Strefford, Matthew Rose-Zerilli, Gareth J. Thomas, Yeng Ang, Andrew D Sharrocks, Rebecca C. Fitzgerald, Tim Underwood
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-42750-5

Common patterns of gene regulation associated with Cesarean section and the development of islet autoimmunity – indications of immune cell activation
Cited by: 5
Author(s): Michael Laimighofer, Ramona Lickert, R. Fuerst, Fabian J. Theis, Christiane Winkler, Ezio Bonifacio, Anette‐Gabriele Ziegler, Jan Krumsiek
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13023-014-0160-2

Molecular characterization of subcutaneous panniculitis-like T-cell lymphoma reveals upregulation of immunosuppression- and autoimmunity-associated genes
Cited by: 15
Author(s): Pilvi Maliniemi, Sonja Hahtola, Kristian Ovaska, Leila Jeskanen, Liisa Väkevä, Kirsi Jäntti, Rudolf Stadler, David Michonneau, Sylvie Fraïtag, Sampsa Hautaniemi, Annamari Ranki
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-019-43795-2

Replication termination without a replication fork trap
Cited by: 20
Author(s): Elisa Galli, Jean-Luc Ferat, Jean-Michel Desfontaines, Marie-Eve Val, Ove Skovgaard, François‐Xavier Barre, Christophe Possoz
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-46664-0

Virus Genotype-Dependent Transcriptional Alterations in Lipid Metabolism and Inflammation Pathways in the Hepatitis C Virus-infected Liver
Cited by: 18
Author(s): W. d’Avigdor, Magdalena A. Budzinska, M Lee, Roselind S. Lam, James G. Kench, Michael Stapelberg, Susan V. McLennan, Geoffrey C. Farrell, Jacob George, Geoffrey W. McCaughan, Thomas Tu, Nicholas Shackel
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-019-0281-1

SnRK2 protein kinases represent an ancient system in plants for adaptation to a terrestrial environment
Cited by: 69
Author(s): Akihisa Shinozawa, Ryoko Otake, Daisuke Takezawa, Taishi Umezawa, Kenji Kono, Keisuke Tanaka, Anna Amagai, Shin-nosuke Ishikawa, Yusuke Hara, Yasuko Kamisugi, Andrew C. Cuming, Koichi Hori, Hiroyuki Ohta, Fumiyuki Takahashi, Kazuo Shinozaki, Takahisa Hayashi, Teruaki Taji, Yoichi Sakata
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-49124-x

Gene Regulatory Networks in Peripheral Mononuclear Cells Reveals Critical Regulatory Modules and Regulators of Multiple Sclerosis
Cited by: 8
Author(s): Perumal Gnanakkumaar, Ram Murugesan, Shiek S. S. J. Ahmed
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9010142

Dissecting Mechanisms of Melanoma Resistance to BRAF and MEK Inhibitors Revealed Genetic and Non-Genetic Patient- and Drug-Specific Alterations and Remarkable Phenotypic Plasticity
Cited by: 41
Author(s): Mariusz L. Hartman, Małgorzata Sztiller-Sikorska, Anna Gajos-Michniewicz, Małgorzata Czyż
Software Mentions: 1
Published: over 6 years ago

10.1186/2001-1326-3-7

Clinical proteomic biomarkers: relevant issues on study design & technical considerations in biomarker development
Cited by: 108
Author(s): Maria Frantzi, Akshay Bhat, Agnieszka Latosinska
Software Mentions: 1
Published: about 12 years ago

10.1038/cti.2015.17

Expression profiling pre‐diabetic mice to uncover drugs with clinical application to type 1 diabetes
Cited by: 2
Author(s): Dimeng Pang, Katharine M. Irvine, Ahmed M. Mehdi, Helen E. Thomas, Mark Harris, Emma E. Hamilton‐Williams, Ranjeny Thomas
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-020-69254-x

Identification of potential biomarkers for predicting the early onset of diabetic cardiomyopathy in a mouse model
Cited by: 8
Author(s): Rabia Johnson, Xolisa Nxele, Martin Cour, Nonhlakanipho F. Sangweni, Tracey Jooste, Nkanyiso Hadebe, Ebrahim Samodien, Mongi Benjeddou, Mikateko Mazino, Johan Louw, Sandrine Lecour
Software Mentions: 1
Published: over 5 years ago

10.1093/cid/ciaa503

The Current Status of Enteric Fever Diagnostics and Implications for Disease Control
Cited by: 2
Author(s): Stephen Baker, Christoph J. Blohmke, Mailis Maes, Peter I Johnston, Thomas C. Darton
Software Mentions: 1
Published: over 5 years ago

10.1007/s10585-016-9810-1

Prognostic value of 5-microRNA based signature in T2-T3N0 colon cancer
Cited by: 49
Author(s): Maciej Bobowicz, Marcin Skrzypski, Piotr Czapiewski, Michał Marczyk, Agnieszka Maciejewska, Michał Jankowski, Anna Szulgo-Paczkowska, Wojciech Zegarski, Ryszard Pawłowski, Joanna Polańska, Wojciech Biernat, Janusz Jaśkiewicz, Jacek Jassem
Software Mentions: 1
Published: over 9 years ago

10.1186/1479-5876-9-72

SULFs in human neoplasia: implication as progression and prognosis factors
Cited by: 68
Author(s): Caroline Bret, Jérôme Moreaux, Jean‐François Schved, Dirk Hose, Bernard Klein
Software Mentions: 1
Published: almost 15 years ago

10.3390/ijms21103480

The GOLIATH Project: Towards an Internationally Harmonised Approach for Testing Metabolism Disrupting Compounds
Cited by: 33
Author(s): Juliette Legler, Daniel Zalko, Fabien Jourdan, Miriam N. Jacobs, Bernard Fromenty, Patrick Balaguer, William Bourguet, Vesna Munić Kos, Ángel Nadal, Claire Beausoleil, Susana Cristóbal, Sylvie Remy, Sibylle Ermler, Luigi Margiotta-Casaluci, Julian L. Griffin, Bruce Blumberg, Christophe Chesné, Sebastian Hoffmann, Patrik L. Andersson, Jorke H. Kamstra
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21113749

17-Aminogeldanamycin Inhibits Constitutive Nuclear Factor-Kappa B (NF-κB) Activity in Patient-Derived Melanoma Cell Lines
Cited by: 7
Author(s): Mariusz L. Hartman, Magdalena Rogut, Aleksandra Mielczarek-Lewandowska, Michal Wozniak, Małgorzata Czyż
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13148-020-00851-3

Genome-wide DNA methylation profiles of low- and high-grade adenoma reveals potential biomarkers for early detection of colorectal carcinoma
Cited by: 32
Author(s): Fan Jian, Jun Li, Shicheng Guo, Chengcheng Tao, Haikun Zhang, Wenjing Wang, Ying Zhang, Dake Zhang, Shigang Ding, Changqing Zeng
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21124442

Functional Heterogeneity of Protein Kinase A Activation in Multipotent Stromal Cells
Cited by: 11
Author(s): Pyotr A. Tyurin‐Kuzmin, Maxim Karagyaur, Konstantin Kulebyakin, Daniyar T. Dyikanov, Vadim Chechekhin, Anastasiya M Ivanova, Mariya Skryabina, Mikhail Arbatskiy, Veronika Sysoeva, Kalinina Ni, В. А. Ткачук
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21207437

Targeting SRC Kinase Signaling in Pancreatic Cancer Stem Cells
Cited by: 17
Author(s): Sonia Alcalá, Víctor Mayoral-Varo, Laura Ruiz-Cañas, Juan Carlos López-Gil, Christopher Heeschen, Jorge Martı́n-Pérez, Bruno Sáinz
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21218069

Intra-Individual Behavioural Variability: A Trait under Genetic Control
Cited by: 12
Author(s): Rie Henriksen, Andrey Höglund, Jesper Fogelholm, Robin N. Abbey-Lee, Martin Johnsson, Niels Jeroen Dingemanse, Dominic Wright
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-018-0542-8

Epigenetic regulation of ID4 in breast cancer: tumor suppressor or oncogene?
Cited by: 20
Author(s): Daniela Nasif, Emanuel Campoy, Sergio Laurito, Richard L. Branham, Guillermo Urrutia, María Roqué, Marı́a Teresita Branham
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22126505

Screen Key Genes Associated with Distraction-Induced Osteogenesis of Stem Cells Using Bioinformatics Methods
Cited by: 2
Author(s): Jishizhan Chen, Jia Hua, Wenhui Song
Software Mentions: 1
Published: almost 5 years ago

10.1155/2019/1697913

Plasticity of Drug-Naïve and Vemurafenib- or Trametinib-Resistant Melanoma Cells in Execution of Differentiation/Pigmentation Program
Cited by: 24
Author(s): Małgorzata Czyż, Małgorzata Sztiller-Sikorska, Anna Gajos-Michniewicz, Marta Osrodek, Mariusz L. Hartman
Software Mentions: 1
Published: almost 7 years ago

10.1186/1479-5876-8-6

Robust TLR4-induced gene expression patterns are not an accurate indicator of human immunity
Cited by: 4
Author(s): Kelly L. Brown, Reza Falsafi, Winnie W. S. Kum, Pamela Hamill, Jennifer L. Gardy, Donald J. Davidson, Stuart E. Turvey, B. Brett Finlay, David P. Speert, Robert E. W. Hancock
Software Mentions: 1
Published: about 16 years ago

10.18632/oncotarget.6768

Inhibiting the anaphase promoting complex/cyclosome induces a metaphase arrest and cell death in multiple myeloma cells
Cited by: 33
Author(s): Susanne Lub, Anke Maes, Ken Maes, Kim De Veirman, Elke De Bruyne, Eline Menu, Karel Fostier, Alboukadel Kassambara, Jérôme Moreaux, Dirk Hose, Xavier Leleu, Randall W. King, Karin Vanderkerken, Els Van Valckenborgh
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9379

GFOD1 and peejar are promising markers for clear-cell renal cell carcinoma disease progression
Cited by: 3
Author(s): Xiaorong Wu, Yonghui Chen, Wei Chen, Wen Kong, Jiwei Huang, Zhendong Jin, Wei Xue, Dongming Liu, Yiran Huang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.9578

Functional/activity network (FAN) analysis of gene-phenotype connectivity liaised by grape polyphenol resveratrol
Cited by: 15
Author(s): Tze Chen Hsieh, Sing-Yung Wu, Dylan John Bennett, Barbara B. Doonan, Erxi Wu, Joseph M. Wu
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.13989

Endometrial cancer cells exhibit high expression of p110β and its selective inhibition induces variable responses on PI3K signaling, cell survival and proliferation
Cited by: 14
Author(s): Thomas Karlsson, Camilla Krakstad, Ingvild L. Tangen, Erling A. Høivik, Pamela M. Pollock, Helga B. Salvesen, Aurélia E. Lewis
Software Mentions: 1
Published: over 9 years ago

10.1016/j.drudis.2012.07.014

Transcriptional data: a new gateway to drug repositioning?
Cited by: 193
Author(s): Francesco Iorio, Timothy Rittman, Hong Ge, Michael P. Menden, Julio Sáez-Rodríguez
Software Mentions: 1
Published: about 13 years ago

10.1242/dmm.021626

Pulmonary transcriptome analysis in the rabbit model of surgically-induced diaphragmatic hernia treated with fetal tracheal occlusion
Cited by: 17
Author(s): Alexander C. Engels, Paul Brady, Molka Kammoun, Julio Finalet Ferreiro, Philip DeKoninck, Masayuki Endo, Jaan Toelen, Joris Robert Vermeesch, Jan Deprest
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.13414

E-cadherin downregulation sensitizes PTEN-mutant tumors to PI3Kβ silencing
Cited by: 10
Author(s): África Millán-Uclés, Susana Zuluaga, Miriam Marqués, Jesús Vallejo-Díaz, Luis Sanz, Ariel Cariaga-Martínez, Francisco X. Real, Ana C. Carrera
Software Mentions: 1
Published: over 9 years ago

10.15252/emmm.201708163

An <scp>FGFR</scp> 3/ <scp>MYC</scp> positive feedback loop provides new opportunities for targeted therapies in bladder cancers
Cited by: 40
Author(s): Mélanie Mahé, Florent Dufour, Hélène Neyret–Kahn, Aura Ileana Moreno-Vega, C Béraud, Ming Shi, Iméne Hamaidi, Virginia Sánchez-Quiles, Clémentine Krucker, Marion Dorland‐Galliot, Élodie Chapeaublanc, Rémy Nicolle, Hervé Lang, Célio Pouponnot, Thierry Massfelder, François Radvanyi, Isabelle Bernard‐Pierrot
Software Mentions: 1
Published: about 8 years ago

10.1080/22221751.2019.1645572

Inter- and intra-lineage genetic diversity of wild-type Zika viruses reveals both common and distinctive nucleotide variants and clusters of genomic diversity
Cited by: 19
Author(s): Natalie D. Collins, Steven G. Widen, Li Li, Daniele M. Swetnam, Pei–Yong Shi, Robert B. Tesh, Vanessa V. Sarathy
Software Mentions: 1
Published: over 7 years ago

10.1530/ERC-13-0098

Clinical and functional impact of TARBP2 over-expression in adrenocortical carcinoma
Cited by: 51
Author(s): Stefano Caramuta, Linkiat Lee, Deniz M. Özata, Pınar Akçakaya, Hong Xie, Anders Höög, Jan Zedenius, Martin Bäckdahl, Catharina Larsson, Weng‐Onn Lui
Software Mentions: 1
Published: almost 13 years ago

10.1530/ERC-17-0399

GnRH antagonist treatment of malignant adrenocortical tumors
Cited by: 14
Author(s): Milena Doroszko, Marcin Chruściel, Joanna Stelmaszewska, T. Ślęzak, Sławomir Anisimowicz, Ursula Plöckinger, Marcus Quinkler, Marco Bonomi, Sławomir Wołczyński, Ilpo Huhtaniemi, Jorma Toppari, Nafis Rahman
Software Mentions: 1
Published: over 7 years ago

10.1111/1462-2920.12726

Adaptation of anaerobic cultures ofEscherichia coli K-12 in response to environmental trimethylamine-N-oxide
Cited by: 9
Author(s): Katie J. Denby, Matthew D. Rolfe, Ellen Crick, Guido Sanguinetti, Robert K. Poole, Jeffrey Green
Software Mentions: 1
Published: about 11 years ago

10.1111/j.1462-2920.2011.02461.x

Genomic variations define divergence of water/wildlife‐associated Campylobacter jejuni niche specialists from common clonal complexes
Cited by: 54
Author(s): Philip J. Hepworth, Kevin E. Ashelford, Jason Hinds, Katherine A. Gould, Adam A. Witney, Nicola Williams, Howard Leatherbarrow, Nigel P. French, Richard J. Birtles, Chriselle Mendonca, Nick Dorrell, Brendan W. Wren, Paul Wigley, Neil Hall, Craig Winstanley
Software Mentions: 1
Published: about 15 years ago

10.1242/dev.112623

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo
Cited by: 53
Author(s): Isabel Olivera-Martínez, Nicholas J. Schurch, Roman A. Li, Junfang Song, Pamela A. Halley, Raman M Das, David W. Burt, Geoffrey J. Barton, Kate G. Storey
Software Mentions: 1
Published: over 11 years ago

10.1186/s13072-015-0018-4

Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast
Cited by: 40
Author(s): Cristina Cotobal, María Rodríguez-López, Caia D. S. Duncan, Ayesha Hasan, Akira Yamashita, Masayuki Yamamoto, Jürg Bähler, Juan Mata
Software Mentions: 1
Published: over 10 years ago

10.1186/s13072-016-0078-0

Chromatin variation associated with liver metabolism is mediated by transposable elements
Cited by: 30
Author(s): Juan Du, Amy Leung, Candi Trac, Michael Lee, Brian W. Parks, Aldons J. Lusis, Rama Natarajan, Dustin E. Schones
Software Mentions: 1
Published: almost 10 years ago

10.1186/1756-8935-3-6

A paucity of heterochromatin at functional human neocentromeres
Cited by: 86
Author(s): Alicia Alonso, Dan Hasson, Fanny Cheung, Peter E. Warburton
Software Mentions: 1
Published: about 16 years ago

10.18632/oncotarget.16064

Integrated analysis of genes associated with poor prognosis of patients with colorectal cancer liver metastasis
Cited by: 30
Author(s): Zhenyuan Qian, Guobing Zhang, Guangyuan Song, Jing Shi, Lijie Gong, Yiping Mou, Yong Han
Software Mentions: 1
Published: about 9 years ago

10.1016/j.exer.2021.108553

ON-bipolar cell gene expression during retinal degeneration: Implications for optogenetic visual restoration
Cited by: 13
Author(s): Michael James Gilhooley, Doron Hickey, Moritz Lindner, Teele Palumaa, Steven Hughes, Stuart N. Peirson, Robert E. MacLaren, Mark W. Hankins
Software Mentions: 1
Published: almost 5 years ago

10.1242/dev.168146

Postnatal liver functional maturation requires Cnot complex-mediated decay of mRNAs encoding cell cycle and immature liver genes
Cited by: 17
Author(s): Toru Suzuki, Chisato Kikuguchi, Saori Nishijima, Takeshi Nagashima, Akinori Takahashi, Mariko Okada, Tadashi Yamamoto
Software Mentions: 1
Published: over 7 years ago

10.1038/s12276-018-0162-6

The E3 ubiquitin ligase TRIM25 regulates adipocyte differentiation via proteasome-mediated degradation of PPARγ
Cited by: 17
Author(s): Jae Min Lee, Sun Sil Choi, Yo Han Lee, Keon Woo Khim, Susan A. Yoon, Byung-gyu Kim, Dougu Nam, Pann‐Ghill Suh, Kyungjae Myung, Jang Hyun Choi
Software Mentions: 1
Published: over 7 years ago

10.1016/j.devcel.2014.12.024

Hoxa2 Selectively Enhances Meis Binding to Change a Branchial Arch Ground State
Cited by: 70
Author(s): Shilu Amin, Ian J. Donaldson, Denise A. Zannino, James Hensman, Magnus Rattray, Marta Losa, François Spitz, Franck Ladam, Charles G. Sagerström, Nicoletta Bobola
Software Mentions: 1
Published: about 11 years ago

10.18632/oncotarget.20284

Downregulation of microRNA-31 inhibits proliferation and induces apoptosis by targeting HIF1AN in human keloid
Cited by: 21
Author(s): Juan Zhang, Dan Xu, Na Li, Yan Li, Yongjing He, Xingbo Hu, Lechun Lyu, Li He
Software Mentions: 1
Published: over 8 years ago

10.1016/j.devcel.2016.10.015

The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
Cited by: 188
Author(s): Orsolya Symmons, Leslie Pan, Silvia Remeseiro, Tuğçe Aktaş, Felix A. Klein, Wolfgang Huber, François Spitz
Software Mentions: 1
Published: over 9 years ago

10.1093/database/baaa073

A curated database reveals trends in single-cell transcriptomics
Cited by: 130
Author(s): Valentine Svensson, Eduardo da Veiga Beltrame, Lior Pachter
Software Mentions: 1
Published: over 6 years ago

10.1093/database/bat074

HypoxiaDB: a database of hypoxia-regulated proteins
Cited by: 29
Author(s): Pankaj Khurana, R. Sugadev, Jaspreet Jain, Shashi Bala Singh
Software Mentions: 1
Published: over 13 years ago

10.12688/f1000research.7911.1

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources
Cited by: 14
Author(s): David Bousfield, Johanna McEntyre, Sameer Velankar, George Papadatos, Alex Bateman, Guy Cochrane, Jee-Hyub Kim, Florian Graef, Vid Vartak, Blaise T. F. Alako, Niklas Blomberg
Software Mentions: 1
Published: about 10 years ago

10.1093/database/bav022

Comprehensive data resources and analytical tools for pathological association of aminoacyl tRNA synthetases with cancer
Cited by: 4
Author(s): Ji Hyun Lee, Sungyong You, Do Young Hyeon, Byeongsoo Kang, Hyerim Kim, Kyoung Mii Park, Byung-Woo Han, Daehee Hwang, Sung Hoon Kim
Software Mentions: 1
Published: about 11 years ago

10.18632/oncotarget.11215

Frequency of expression and generation of T-cell responses against antigens on multiple myeloma cells in patients included in the GMMG-MM5 trial
Cited by: 5
Author(s): Michael Schmitt, Angela Hückelhoven, Michael Hundemer, Anita Schmitt, Susanne Lipp, Martina Emde, Hans Salwender, Mathias Hänel, Katja Weisel, Uta Bertsch, Jan Dürig, Anthony D. Ho, Igor Wolfgang Blau, Hartmut Goldschmidt, Anja Seckinger, Dirk Hose
Software Mentions: 1
Published: over 9 years ago

10.1093/database/bay059

IsopiRBank: a research resource for tracking piRNA isoforms
Cited by: 14
Author(s): Huan Zhang, Asim Ali, Jianing Gao, Rongjun Ban, Xiaohua Jiang, Yuanwei Zhang, Qinghua Shi
Software Mentions: 1
Published: over 8 years ago

10.1002/2211-5463.12082

Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato
Cited by: 14
Author(s): Paolo Facella, Fabrizio Carbone, Antonio Placido, Gaetano Perrotta
Software Mentions: 1
Published: about 9 years ago

10.1111/1574-6968.12230

An attenuated mutant of the Rv1747 ATP-binding cassette transporter ofMycobacterium tuberculosisand a mutant of its cognate kinase, PknF, show increased expression of the efflux pump-relatediniBACoperon
Cited by: 6
Author(s): Vicky L. Spivey, Rachael H. Whalan, Elizabeth Hirst, Stephen J. Smerdon, Roger S. Buxton
Software Mentions: 1
Published: over 12 years ago

10.3389/fnbeh.2019.00103

Autonomic and Redox Imbalance Correlates With T-Lymphocyte Inflammation in a Model of Chronic Social Defeat Stress
Cited by: 23
Author(s): Cassandra Moshfegh, Safwan Elkhatib, Christopher W. Collins, Allison J. Kohl, Adam J. Case
Software Mentions: 1
Published: almost 7 years ago

10.3389/fbioe.2015.00058

SPECTRA: An Integrated Knowledge Base for Comparing Tissue and Tumor-Specific PPI Networks in Human
Cited by: 13
Author(s): Giovanni Micale, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.17926

Increased transcriptional and metabolic capacity for lipid metabolism in the peripheral zone of the prostate may underpin its increased susceptibility to cancer
Cited by: 11
Author(s): Omar Al Kadhi, Μαρία Τράκα, Antonietta Melchini, Perla Troncoso‐Rey, Wiktor Jurkowski, Marianne Defernez, Purnima Pachori, Robert Mills, Richard Y. Ball, Richard Mithen
Software Mentions: 1
Published: almost 9 years ago

10.1111/jcmm.13023

Reduced angiogenic gene expression in morbillivirus‐triggered oncolysis in a translational model for histiocytic sarcoma
Cited by: 24
Author(s): Vanessa Maria Pfankuche, Ingo Spitzbarth, Stefanie Lapp, Reiner Ulrich, Ulrich Deschl, Arno Kalkuhl, Wolfgang Baumgärtner, Christina Puff
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.13051

Acquired TET 2 mutation in one patient with familial platelet disorder with predisposition to AML led to the development of pre‐leukaemic clone resulting in T2‐ ALL and AML ‐M0
Cited by: 10
Author(s): Vladimir T. Manchev, Hind Bouzid, Iléana Antony-Debré, Betty Leite, Guillaume Meurice, Nathalie Droin, Thomas Prébet, Régis Costello, William Vainchenker, Isabelle Plo, M’Boyba Diop, Elizabeth Macintyre, Vahid Asnafi, Rémi Favier, Véronique Baccini, Hana Raslová
Software Mentions: 1
Published: over 9 years ago

10.1093/database/baz023

YESdb: integrative analysis of environmental stress in yeast
Cited by: 1
Author(s): Evi Berchtold, Gergely Csaba, Ralf Zimmer
Software Mentions: 1
Published: over 7 years ago

10.1172/JCI129115

Zeb1 modulates hematopoietic stem cell fates required for suppressing acute myeloid leukemia
Cited by: 29
Author(s): Alhomidi Almotiri, Hamed Ahmad A. Alzahrani, Juan Bautista Menendez-Gonzalez, Ali Abdelfattah, Badi Alotaibi, Lubaid Saleh, Adelle Greene, Mia R. F. Georgiou, Alex Gibbs, Amani Salem Alsayari, Sarab Taha, Leigh-anne Thomas, Dhruv Shah, Sarah Edkins, Peter Giles, Marc P. Stemmler, Simone Brabletz, Thomas Brabletz, Ashleigh S. Boyd, Florian A. Siebzehnrübl, Neil P. Rodrigues
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/ert337

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family
Cited by: 109
Author(s): Selahattin Danisman, Aalt D. J. van Dijk, Andrea Bimbó, Froukje van der Wal, Lars Hennig, Stefan de Folter, Gerco C. Angenent, Richard G. H. Immink
Software Mentions: 1
Published: over 12 years ago

10.1093/jxb/ert397

Overexpression ofPYL5in rice enhances drought tolerance, inhibits growth, and modulates gene expression
Cited by: 178
Author(s): Hyun-Mi Kim, Kyeyoon Lee, Hyunsik Hwang, Nikita Bhatnagar, Dool Yi Kim, In Sun Yoon, Myung-Ok Byun, Sun Tae Kim, Ki‐Hong Jung, Beom-Gi Kim
Software Mentions: 1
Published: about 12 years ago

10.1016/j.kint.2018.11.040

Lrig2 and Hpse2, mutated in urofacial syndrome, pattern nerves in the urinary bladder
Cited by: 25
Author(s): Neil Roberts, Emma Hilton, Filipa Lopes, Subir Singh, Michael J. Randles, Natalie J. Gardiner, Karl Chopra, Riccardo Coletta, Zunera Bajwa, Robert J. Hall, Wyatt W. Yue, Franz Schaefer, Stefanie Weber, Roger Henriksson, Helen M. Stuart, Håkan Hedman, William G. Newman, Adrian S. Woolf
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1000066

The Uptake of Apoptotic Cells Drives Coxiella burnetii Replication and Macrophage Polarization: A Model for Q Fever Endocarditis
Cited by: 49
Author(s): Marie Benoit, Éric Ghigo, Christian Capo, Didier Raoult, Jean‐Louis Mège
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1000529

Comprehensive Identification of Salmonella enterica Serovar Typhimurium Genes Required for Infection of BALB/c Mice
Cited by: 74
Author(s): Roy R. Chaudhuri, Sarah Peters, Stephen J. Pleasance, Helen Northen, Chrissie Willers, Gavin K. Paterson, Danielle B. Cone, Andrew G. Allen, Paul Owen, Gil Shalom, Dov J. Stekel, Ian G. Charles, Duncan J. Maskell
Software Mentions: 1
Published: over 16 years ago

Projects: bioconductor: ArrayExpress

Science Score: 83/100

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Penalties:

Papers Mentioning ArrayExpress 1,962