bioconductor: ArrayExpress | Projects

10.1093/database/baaa073

A curated database reveals trends in single-cell transcriptomics
Cited by: 130
Author(s): Valentine Svensson, Eduardo da Veiga Beltrame, Lior Pachter
Software Mentions: 1
Published: over 6 years ago

<scp>TORC</scp>1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression, and cell proliferation of fission yeast
Cited by: 113
Author(s): Charalampos Rallis, Sandra Codlin, Jürg Bähler
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.devcel.2016.10.015

The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
Cited by: 188
Author(s): Orsolya Symmons, Leslie Pan, Silvia Remeseiro, Tuğçe Aktaş, Felix A. Klein, Wolfgang Huber, François Spitz
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-6-178

GPX-Macrophage Expression Atlas: A database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults
Cited by: 16
Author(s): Graeme R. Grimes, Stuart Moodie, John S. Beattie, Marie Craigon, Paul Dickinson, Thorsten Forster, Andrew D. Livingston, Muriel Mewissen, Kevin A. Robertson, Alan J. Ross, Garwin K. Sing, Peter Ghazal
Software Mentions: 1
Published: over 20 years ago

10.1111/acel.12160

Meta-analysis on blood transcriptomic studies identifies consistently coexpressed protein-protein interaction modules as robust markers of human aging
Cited by: 40
Author(s): Erik B. van den Akker, Willemijn M. Passtoors, Ritsert C. Jansen, Erik W. van Zwet, Jelle J. Goeman, Marc Hulsman, Valur Emilsson, Markus Perola, Gonneke Willemsen, Brenda W. J. H. Penninx, B.T. Heijmans, Andrea B. Maier, Dorret I. Boomsma, Joost N. Kok, P. Eline Slagboom, Marcel J. T. Reinders, Marian Beekman
Software Mentions: 1
Published: over 12 years ago

10.1016/j.devcel.2014.12.024

Hoxa2 Selectively Enhances Meis Binding to Change a Branchial Arch Ground State
Cited by: 70
Author(s): Shilu Amin, Ian J. Donaldson, Denise A. Zannino, James Hensman, Magnus Rattray, Marta Losa, François Spitz, Franck Ladam, Charles G. Sagerström, Nicoletta Bobola
Software Mentions: 1
Published: about 11 years ago

10.1242/dev.168146

Postnatal liver functional maturation requires Cnot complex-mediated decay of mRNAs encoding cell cycle and immature liver genes
Cited by: 17
Author(s): Toru Suzuki, Chisato Kikuguchi, Saori Nishijima, Takeshi Nagashima, Akinori Takahashi, Mariko Okada, Tadashi Yamamoto
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-9-221

Improved microarray gene expression profiling of virus-infected cells after removal of viral RNA
Cited by: 5
Author(s): Matthijs Raaben, Penn Whitley, Diane Bouwmeester, Robert A. Setterquist, Peter J. M. Rottier, Cornelis A. M. de Haan
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2105-8-360

Linking microarray reporters with protein functions
Cited by: 12
Author(s): Stan Gaj, Arie van Erk, Rachel I. M. van Haaften, Chris T. Evelo
Software Mentions: 1
Published: over 18 years ago

10.1242/dev.112623

Major transcriptome re-organisation and abrupt changes in signalling, cell cycle and chromatin regulation at neural differentiation in vivo
Cited by: 53
Author(s): Isabel Olivera-Martínez, Nicholas J. Schurch, Roman A. Li, Junfang Song, Pamela A. Halley, Raman M Das, David W. Burt, Geoffrey J. Barton, Kate G. Storey
Software Mentions: 1
Published: over 11 years ago

10.1186/ar1903

Cited by: 51
Author(s): Johan Lindberg, Erik af Klint, Ann‐Kristin Ulfgren, André Stark, T. Andersson, Peter Nilsson, Lars Klareskog, Joakim Lundeberg
Software Mentions: 1
Published: over 20 years ago

10.1186/1471-2164-13-33

Transcriptional ontogeny of the developing liver
Cited by: 41
Author(s): Janice S. Lee, William O. Ward, Geremy W. Knapp, Hongzu Ren, Beena Vallanat, Barbara D. Abbott, Karen J. Ho, Seth J. Karp, J. Christopher Corton
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-020-69254-x

Identification of potential biomarkers for predicting the early onset of diabetic cardiomyopathy in a mouse model
Cited by: 8
Author(s): Rabia Johnson, Xolisa Nxele, Martin Cour, Nonhlakanipho F. Sangweni, Tracey Jooste, Nkanyiso Hadebe, Ebrahim Samodien, Mongi Benjeddou, Mikateko Mazino, Johan Louw, Sandrine Lecour
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-11-418

Starvation alters the liver transcriptome of the innate immune response in Atlantic salmon (Salmo salar)
Cited by: 124
Author(s): Samuel Martín, Alex Douglas, D.F. Houlihan, Christopher J. Secombes
Software Mentions: 1
Published: over 16 years ago

10.1242/dmm.021626

Pulmonary transcriptome analysis in the rabbit model of surgically-induced diaphragmatic hernia treated with fetal tracheal occlusion
Cited by: 17
Author(s): Alexander C. Engels, Paul Brady, Molka Kammoun, Julio Finalet Ferreiro, Philip DeKoninck, Masayuki Endo, Jaan Toelen, Joris Robert Vermeesch, Jan Deprest
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-019-5464-0

A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes
Cited by: 3
Author(s): Marzena Mura, Roman Jaksik, Anna Lalik, Krzysztof Biernacki, Marek Kimmel, Joanna Rzeszowska-Wolny, Krzysztof Fujarewicz
Software Mentions: 1
Published: about 7 years ago

10.1016/j.drudis.2012.07.014

Transcriptional data: a new gateway to drug repositioning?
Cited by: 193
Author(s): Francesco Iorio, Timothy Rittman, Hong Ge, Michael P. Menden, Julio Sáez-Rodríguez
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-7-319

Systematic interpretation of microarray data using experiment annotations
Cited by: 17
Author(s): Kurt Fellenberg, Christian Busold, Olaf Witt, Andrea S. Bauer, Boris Beckmann, Nicole Hauser, Marcus Frohme, Stefan Winter, Jürgen Dippon, Jörg D. Hoheisel
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-9-3

Switch-like genes populate cell communication pathways and are enriched for extracellular proteins
Cited by: 36
Author(s): Adam Ertel, Aydın Tözeren
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-8-202

Species differences in brain gene expression profiles associated with adult behavioral maturation in honey bees
Cited by: 48
Author(s): Moushumi Sen Sarma, Charles W. Whitfield, Gene E. Robinson
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-14-169

Transcriptome analysis of pigeon milk production – role of cornification and triglyceride synthesis genes
Cited by: 38
Author(s): Meagan J Gillespie, Tamsyn M. Crowley, Volker Häring, Susanne Wilson, Jennifer Harper, Jean Payne, Diane Green, Paul Monaghan, John A. Donald, Kevin R. Nicholas, Robert J. Moore
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-8-181

Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni
Cited by: 34
Author(s): Michael Waisberg, Francisco Pereira Lobo, Gustavo C. Cerqueira, Liana Konovaloff Jannotti Passos, Omar S. Carvalho, Glória Regina Franco, Najib M. El-Sayed
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-8-387

BMDExpress: a software tool for the benchmark dose analyses of genomic data
Cited by: 160
Author(s): Longlong Yang, Bruce C. Allen, Russell S. Thomas
Software Mentions: 1
Published: over 18 years ago

10.15252/emmm.201708163

An <scp>FGFR</scp> 3/ <scp>MYC</scp> positive feedback loop provides new opportunities for targeted therapies in bladder cancers
Cited by: 40
Author(s): Mélanie Mahé, Florent Dufour, Hélène Neyret–Kahn, Aura Ileana Moreno-Vega, C Béraud, Ming Shi, Iméne Hamaidi, Virginia Sánchez-Quiles, Clémentine Krucker, Marion Dorland‐Galliot, Élodie Chapeaublanc, Rémy Nicolle, Hervé Lang, Célio Pouponnot, Thierry Massfelder, François Radvanyi, Isabelle Bernard‐Pierrot
Software Mentions: 1
Published: about 8 years ago

10.1098/rsob.120091

Systems analysis of transcription factor activities in environments with stable and dynamic oxygen concentrations
Cited by: 27
Author(s): Matthew D. Rolfe, Andrea Ocone, Melanie R. Stapleton, Simon T.E. Hall, Eleanor W. Trotter, Robert K. Poole, Guido Sanguinetti, Jeffrey Green
Software Mentions: 1
Published: almost 14 years ago

10.1186/1743-7075-7-56

Identification of the Eph receptor pathway as a novel target for eicosapentaenoic acid (EPA) modification of gene expression in human colon adenocarcinoma cells (HT-29)
Cited by: 5
Author(s): Joanne F. Doleman, John J. Eady, Ruan Elliott, Robert J. Foxall, John Seers, Ian T. Johnson, Elizabeth K. Lund
Software Mentions: 1
Published: over 16 years ago

10.1080/22221751.2019.1645572

Inter- and intra-lineage genetic diversity of wild-type Zika viruses reveals both common and distinctive nucleotide variants and clusters of genomic diversity
Cited by: 19
Author(s): Natalie D. Collins, Steven G. Widen, Li Li, Daniele M. Swetnam, Pei–Yong Shi, Robert B. Tesh, Vanessa V. Sarathy
Software Mentions: 1
Published: over 7 years ago

10.1530/ERC-13-0098

Clinical and functional impact of TARBP2 over-expression in adrenocortical carcinoma
Cited by: 51
Author(s): Stefano Caramuta, Linkiat Lee, Deniz M. Özata, Pınar Akçakaya, Hong Xie, Anders Höög, Jan Zedenius, Martin Bäckdahl, Catharina Larsson, Weng‐Onn Lui
Software Mentions: 1
Published: almost 13 years ago

10.1530/ERC-17-0399

GnRH antagonist treatment of malignant adrenocortical tumors
Cited by: 14
Author(s): Milena Doroszko, Marcin Chruściel, Joanna Stelmaszewska, T. Ślęzak, Sławomir Anisimowicz, Ursula Plöckinger, Marcus Quinkler, Marco Bonomi, Sławomir Wołczyński, Ilpo Huhtaniemi, Jorma Toppari, Nafis Rahman
Software Mentions: 1
Published: over 7 years ago

10.1186/ar2294

Expression and regulation of CCL18 in synovial fluid neutrophils of patients with rheumatoid arthritis
Cited by: 49
Author(s): Judith Auer, Bläss Markus, Hendrik Schulze‐Koops, Stefan Rußwurm, Thomas Nagel, Joachim R. Kalden, Martin Röllinghoff, H U Beuscher
Software Mentions: 1
Published: over 19 years ago

10.1186/ar2002

Cited by: 54
Author(s): Betti Giusti, Gabriella Fibbi, Francesca Margheri, Simona Serratì, Luciana Rossi, Filippo Poggi, Ilaria Lapini, Alberto Magi, Angela Del Rosso, Marina Cinelli, Serena Guiducci, Bashar Kahaleh, Laura Bazzichi, Stefano Bombardieri, Marco Matucci‐Cerinic, Gian Franco Gensini, Mario Del Rosso, Rosanna Abbate
Software Mentions: 1
Published: over 20 years ago

10.1111/1462-2920.12726

Adaptation of anaerobic cultures ofEscherichia coli K-12 in response to environmental trimethylamine-N-oxide
Cited by: 9
Author(s): Katie J. Denby, Matthew D. Rolfe, Ellen Crick, Guido Sanguinetti, Robert K. Poole, Jeffrey Green
Software Mentions: 1
Published: about 11 years ago

10.1111/j.1462-2920.2011.02461.x

Genomic variations define divergence of water/wildlife‐associated Campylobacter jejuni niche specialists from common clonal complexes
Cited by: 54
Author(s): Philip J. Hepworth, Kevin E. Ashelford, Jason Hinds, Katherine A. Gould, Adam A. Witney, Nicola Williams, Howard Leatherbarrow, Nigel P. French, Richard J. Birtles, Chriselle Mendonca, Nick Dorrell, Brendan W. Wren, Paul Wigley, Neil Hall, Craig Winstanley
Software Mentions: 1
Published: about 15 years ago

10.1186/ar2090

Cited by: 71
Author(s): Johan Lindberg, Erik af Klint, Anca I. Catrina, Peter Nilsson, Lars Klareskog, Ann‐Kristin Ulfgren, Joakim Lundeberg
Software Mentions: 1
Published: over 20 years ago

10.1186/s12864-016-2562-0

Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq
Cited by: 44
Author(s): Shaofeng Li, Chengming Fan, Yán Li, Jianhui Zhang, Jie Sun, Yuhong Chen, Tian Chen, Xiaohua Su, Mengzhu Lu, Chengzhi Liang, Zhongliang Hu
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms21103480

The GOLIATH Project: Towards an Internationally Harmonised Approach for Testing Metabolism Disrupting Compounds
Cited by: 33
Author(s): Juliette Legler, Daniel Zalko, Fabien Jourdan, Miriam N. Jacobs, Bernard Fromenty, Patrick Balaguer, William Bourguet, Vesna Munić Kos, Ángel Nadal, Claire Beausoleil, Susana Cristóbal, Sylvie Remy, Sibylle Ermler, Luigi Margiotta-Casaluci, Julian L. Griffin, Bruce Blumberg, Christophe Chesné, Sebastian Hoffmann, Patrik L. Andersson, Jorke H. Kamstra
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13072-015-0018-4

Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast
Cited by: 40
Author(s): Cristina Cotobal, María Rodríguez-López, Caia D. S. Duncan, Ayesha Hasan, Akira Yamashita, Masayuki Yamamoto, Jürg Bähler, Juan Mata
Software Mentions: 1
Published: over 10 years ago

10.1186/s13072-016-0078-0

Chromatin variation associated with liver metabolism is mediated by transposable elements
Cited by: 30
Author(s): Juan Du, Amy Leung, Candi Trac, Michael Lee, Brian W. Parks, Aldons J. Lusis, Rama Natarajan, Dustin E. Schones
Software Mentions: 1
Published: almost 10 years ago

10.1186/1756-8935-3-6

A paucity of heterochromatin at functional human neocentromeres
Cited by: 86
Author(s): Alicia Alonso, Dan Hasson, Fanny Cheung, Peter E. Warburton
Software Mentions: 1
Published: about 16 years ago

10.1186/s12864-018-4954-9

Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression
Cited by: 13
Author(s): Jochen T. Bick, Veronika L. Flöter, Mark D. Robinson, Stefan Bauersachs, Susanne E. Ulbrich
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21113749

17-Aminogeldanamycin Inhibits Constitutive Nuclear Factor-Kappa B (NF-κB) Activity in Patient-Derived Melanoma Cell Lines
Cited by: 7
Author(s): Mariusz L. Hartman, Magdalena Rogut, Aleksandra Mielczarek-Lewandowska, Michal Wozniak, Małgorzata Czyż
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-7-113

Cross-species hybridizations on a multi-species cDNA microarray to identify evolutionarily conserved genes expressed in oocytes
Cited by: 41
Author(s): Maud Vallée, Claude Robert, S. Méthot, Marie‐France Palin, Marc‐André Sirard
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2164-14-301

Genome wide analysis of the complete GlnR nitrogen-response regulon in Mycobacterium smegmatis
Cited by: 53
Author(s): Victoria A Jenkins, Geraint Barton, Brian D. Robertson, Katrina Williams
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.exer.2021.108553

ON-bipolar cell gene expression during retinal degeneration: Implications for optogenetic visual restoration
Cited by: 13
Author(s): Michael James Gilhooley, Doron Hickey, Moritz Lindner, Teele Palumaa, Steven Hughes, Stuart N. Peirson, Robert E. MacLaren, Mark W. Hankins
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2164-8-450

Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance
Cited by: 75
Author(s): Fanny Ramel, Cécile Sulmon, Francisco Cabello‐Hurtado, Ludivine Taconnat, Marie‐Laure Martin‐Magniette, Jean-Pierre Renou, Abdelhak El Amrani, Ivan Couée, Gwenola Gouesbet
Software Mentions: 1
Published: over 18 years ago

10.1038/s12276-018-0162-6

The E3 ubiquitin ligase TRIM25 regulates adipocyte differentiation via proteasome-mediated degradation of PPARγ
Cited by: 17
Author(s): Jae Min Lee, Sun Sil Choi, Yo Han Lee, Keon Woo Khim, Susan A. Yoon, Byung-gyu Kim, Dougu Nam, Pann‐Ghill Suh, Kyungjae Myung, Jang Hyun Choi
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-14-710

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression
Cited by: 26
Author(s): Paul Golby, Javier Nuñez, Adam A. Witney, Jason Hinds, Michael A. Quail, Stephen D. Bentley, Simon R. Harris, Noel H. Smith, R. Glyn Hewinson, Stephen V. Gordon
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-020-6712-z

Lung transcriptomic clock predicts premature aging in cigarette smoke-exposed mice
Cited by: 12
Author(s): Mohamed-Amin Choukrallah, Julia Hoeng, Manuel C. Peitsch, Florian Martin
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-017-4200-x

Genes for asparagine metabolism in Lotus japonicus: differential expression and interconnection with photorespiration
Cited by: 8
Author(s): Margarita García‐Calderón, Carmen M. Pérez-Delgado, Alfredo Credali, José M. Vega, Marco Betti, Antonio J. Márquez
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-12-12

Mesenteric lymph node transcriptome profiles in BALB/c mice sensitized to three common food allergens
Cited by: 12
Author(s): Mainul Husain, Herman J. Boermans, Niel A. Karrow
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-016-2803-2

Purifying selection acts on coding and non-coding sequences of paralogous genes in Arabidopsis thaliana
Cited by: 9
Author(s): Robert Hoffmann, Michael G. Palmgren
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-11-361

Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background
Cited by: 11
Author(s): Harry Noyes, Morris Agaba, Stuart Anderson, Alan Archibald, Andy Brass, John P. Gibson, Laurence S. Hall, Helen Hulme, Sung Jong Oh, Stephen J. Kemp
Software Mentions: 1
Published: almost 16 years ago

10.1186/ar2311

SOX9 transduction of a human chondrocytic cell line identifies novel genes regulated in primary human chondrocytes and in osteoarthritis
Cited by: 61
Author(s): Simon R. Tew, Peter Clegg, Christopher J Brew, C. Redmond, Timothy E. Hardingham
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-11-93

Comparative transcriptome analysis coupled to X-ray CT reveals sucrose supply and growth velocity as major determinants of potato tuber starch biosynthesis
Cited by: 65
Author(s): Stephanus J. Ferreira, Melanie Senning, Sophia Sonnewald, Petra-Maria Keßling, Ralf Goldstein, Uwe Sonnewald
Software Mentions: 1
Published: about 16 years ago

10.3390/ijms21124442

Functional Heterogeneity of Protein Kinase A Activation in Multipotent Stromal Cells
Cited by: 11
Author(s): Pyotr A. Tyurin‐Kuzmin, Maxim Karagyaur, Konstantin Kulebyakin, Daniyar T. Dyikanov, Vadim Chechekhin, Anastasiya M Ivanova, Mariya Skryabina, Mikhail Arbatskiy, Veronika Sysoeva, Kalinina Ni, В. А. Ткачук
Software Mentions: 1
Published: almost 6 years ago

10.12688/f1000research.7911.1

Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources
Cited by: 14
Author(s): David Bousfield, Johanna McEntyre, Sameer Velankar, George Papadatos, Alex Bateman, Guy Cochrane, Jee-Hyub Kim, Florian Graef, Vid Vartak, Blaise T. F. Alako, Niklas Blomberg
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-8-377

Optimization of cDNA microarrays procedures using criteria that do not rely on external standards
Cited by: 4
Author(s): Torunn Bruland, Endre Anderssen, Berit Doseth, Hallgeir Bergum, Vidar Beisvåg, Astrid Lægreid
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-11-389

Array comparative hybridisation reveals a high degree of similarity between UK and European clinical isolates of hypervirulent Clostridium difficile
Cited by: 24
Author(s): Gemma Marsden, Ian J. Davis, Victoria Wright, Mohammed Sebaihia, Ed J. Kuijper, Nigel P. Minton
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-7-224

Development and validation of a bovine macrophage specific cDNA microarray
Cited by: 38
Author(s): Kirsty Jensen, Richard Talbot, Edith Paxton, David Waddington, Elizabeth J. Glass
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2148-9-59

Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation
Cited by: 53
Author(s): Arne W. Nolte, Sébastien Renaut, Louis Bernatchez
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-213X-7-129

Gene array identification of Ipf1/Pdx1-/-regulated genes in pancreatic progenitor cells
Cited by: 26
Author(s): Per H. Svensson, Cecilia Williams, Joakim Lundeberg, Patrik Rydén, Ingela Bergqvist, Helena Edlund
Software Mentions: 1
Published: over 18 years ago

10.1186/s13023-014-0160-2

Molecular characterization of subcutaneous panniculitis-like T-cell lymphoma reveals upregulation of immunosuppression- and autoimmunity-associated genes
Cited by: 15
Author(s): Pilvi Maliniemi, Sonja Hahtola, Kristian Ovaska, Leila Jeskanen, Liisa Väkevä, Kirsi Jäntti, Rudolf Stadler, David Michonneau, Sylvie Fraïtag, Sampsa Hautaniemi, Annamari Ranki
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms21207437

Targeting SRC Kinase Signaling in Pancreatic Cancer Stem Cells
Cited by: 17
Author(s): Sonia Alcalá, Víctor Mayoral-Varo, Laura Ruiz-Cañas, Juan Carlos López-Gil, Christopher Heeschen, Jorge Martı́n-Pérez, Bruno Sáinz
Software Mentions: 1
Published: over 5 years ago

10.1002/2211-5463.12082

Cryptochrome 2 extensively regulates transcription of the chloroplast genome in tomato
Cited by: 14
Author(s): Paolo Facella, Fabrizio Carbone, Antonio Placido, Gaetano Perrotta
Software Mentions: 1
Published: about 9 years ago

10.1111/1574-6968.12230

An attenuated mutant of the Rv1747 ATP-binding cassette transporter ofMycobacterium tuberculosisand a mutant of its cognate kinase, PknF, show increased expression of the efflux pump-relatediniBACoperon
Cited by: 6
Author(s): Vicky L. Spivey, Rachael H. Whalan, Elizabeth Hirst, Stephen J. Smerdon, Roger S. Buxton
Software Mentions: 1
Published: over 12 years ago

10.3389/fnbeh.2019.00103

Autonomic and Redox Imbalance Correlates With T-Lymphocyte Inflammation in a Model of Chronic Social Defeat Stress
Cited by: 23
Author(s): Cassandra Moshfegh, Safwan Elkhatib, Christopher W. Collins, Allison J. Kohl, Adam J. Case
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21218069

Intra-Individual Behavioural Variability: A Trait under Genetic Control
Cited by: 12
Author(s): Rie Henriksen, Andrey Höglund, Jesper Fogelholm, Robin N. Abbey-Lee, Martin Johnsson, Niels Jeroen Dingemanse, Dominic Wright
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2015.00058

SPECTRA: An Integrated Knowledge Base for Comparing Tissue and Tumor-Specific PPI Networks in Human
Cited by: 13
Author(s): Giovanni Micale, Alfredo Ferro, Alfredo Pulvirenti, Rosalba Giugno
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-213X-10-54

Analysis of the asymmetrically expressed Ablim1 locus reveals existence of a lateral plate Nodal-independent left sided signal and an early, left-right independent role for nodal flow
Cited by: 11
Author(s): Jonathan L. Stevens, А. Н. Ермаков, José Bragança, Helen Hilton, Peter A. Underhill, Shoumo Bhattacharya, Nigel A. Brown, Dominic P. Norris
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2407-12-260

Colon cancer molecular subtypes identified by expression profiling and associatedto stroma, mucinous type and different clinical behavior
Cited by: 112
Author(s): Beatriz Pérez-Villamil, Alejandro Romera Lopez, Susana Prieto, Guillermo López–Campos, Antonio Calles, J. A. Asenjo, Julián Sanz-Ortega, Cristina Fernández Pérez, Javier Sastre, Rosario Alfonso, Trinidad Caldés, Fernando Martín-Sánchez, Eduardo Díaz-Rubio
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2407-13-184

Expressional alterations in functional ultra-conserved non-coding rnas in response to all-transretinoic acid - induced differentiation in neuroblastoma cells
Cited by: 34
Author(s): Karen M. Watters, Kenneth Bryan, Niamh H. Foley, Maria Meehan, Raymond L. Stallings
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2407-14-871

Estrogen independent gene expression defines clinically relevant subgroups of estrogen receptor positive breast cancer
Cited by: 4
Author(s): Robin Hallett, John A. Hassell
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2407-10-176

Meta-analysis of archived DNA microarrays identifies genes regulated by hypoxia and involved in a metastatic phenotype in cancer cells
Cited by: 12
Author(s): Michael St.Pierre, Benoît DeHertogh, Anthoula Gaigneaux, Bertrand DeMeulder, Fabrice Berger, Eric Bareke, Carine Michiels, Eric Depiereux
Software Mentions: 1
Published: almost 16 years ago

10.1111/jcmm.13023

Reduced angiogenic gene expression in morbillivirus‐triggered oncolysis in a translational model for histiocytic sarcoma
Cited by: 24
Author(s): Vanessa Maria Pfankuche, Ingo Spitzbarth, Stefanie Lapp, Reiner Ulrich, Ulrich Deschl, Arno Kalkuhl, Wolfgang Baumgärtner, Christina Puff
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.13051

Acquired TET 2 mutation in one patient with familial platelet disorder with predisposition to AML led to the development of pre‐leukaemic clone resulting in T2‐ ALL and AML ‐M0
Cited by: 10
Author(s): Vladimir T. Manchev, Hind Bouzid, Iléana Antony-Debré, Betty Leite, Guillaume Meurice, Nathalie Droin, Thomas Prébet, Régis Costello, William Vainchenker, Isabelle Plo, M’Boyba Diop, Elizabeth Macintyre, Vahid Asnafi, Rémi Favier, Véronique Baccini, Hana Raslová
Software Mentions: 1
Published: over 9 years ago

10.18632/aging.101078

Human exceptional longevity: transcriptome from centenarians is distinct from septuagenarians and reveals a role of Bcl-xL in successful aging
Cited by: 37
Author(s): Consuelo Borrás, Kheira M. Abdelaziz, Juan Gambini, Eva Serna, Marta Inglés, Mónica De la Fuente, Idoia García, Ander Matheu, Paula Sanchís, Ángel Belenguer, Alessandra Errigo, Juan A. Avellana, Ana Barettino, Carla Lloret-Fernández, Nuria Flames, Giovanni Mario Pes, Leocadio Rodríguez‐Mañas, José Viña
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2407-10-482

Differential detection of alternatively spliced variants of Ciz1 in normal and cancer cells using a custom exon-junction microarray
Cited by: 22
Author(s): Faisal Rahman, Naveed Aziz, Dawn Coverley
Software Mentions: 1
Published: over 15 years ago

10.1186/ar3062

New insights into the pathogenesis of glucocorticoid-induced avascular necrosis: microarray analysis of gene expression in a rat model
Cited by: 47
Author(s): Mohammad Amin Kerachian, Denis Cournoyer, Edward J. Harvey, Terry Y.-K. Chow, Louis R. Bégin, Ayoub Nahal, Chantal Séguin
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2407-12-608

Molecular pathways undergoing dramatic transcriptomic changes during tumor development in the human colon
Cited by: 16
Author(s): Rosalia Maglietta, Vania C. Liuzzi, Elisa Cattaneo, Endre Laczkó, Ada Piepoli, Anna Panza, Massimo Carella, Orazio Palumbo, Teresa Staiano, Federico Buffoli, Angelo Andriulli, Giancarlo Marra, Nicola Ancona
Software Mentions: 1
Published: over 13 years ago

10.1172/JCI129115

Zeb1 modulates hematopoietic stem cell fates required for suppressing acute myeloid leukemia
Cited by: 29
Author(s): Alhomidi Almotiri, Hamed Ahmad A. Alzahrani, Juan Bautista Menendez-Gonzalez, Ali Abdelfattah, Badi Alotaibi, Lubaid Saleh, Adelle Greene, Mia R. F. Georgiou, Alex Gibbs, Amani Salem Alsayari, Sarab Taha, Leigh-anne Thomas, Dhruv Shah, Sarah Edkins, Peter Giles, Marc P. Stemmler, Simone Brabletz, Thomas Brabletz, Ashleigh S. Boyd, Florian A. Siebzehnrübl, Neil P. Rodrigues
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-8-18

Expression profiling to predict the clinical behaviour of ovarian cancer fails independent evaluation
Cited by: 11
Author(s): Olivier Gevaert, Frank De Smet, Toon Van Gorp, Nathalie Pochet, Kristof Engelen, Frédéric Amant, Bart De Moor, Dirk Timmerman, Ignace Vergote
Software Mentions: 1
Published: about 18 years ago

10.1093/jxb/ert337

Analysis of functional redundancies within the Arabidopsis TCP transcription factor family
Cited by: 109
Author(s): Selahattin Danisman, Aalt D. J. van Dijk, Andrea Bimbó, Froukje van der Wal, Lars Hennig, Stefan de Folter, Gerco C. Angenent, Richard G. H. Immink
Software Mentions: 1
Published: over 12 years ago

10.1093/jxb/ert397

Overexpression ofPYL5in rice enhances drought tolerance, inhibits growth, and modulates gene expression
Cited by: 178
Author(s): Hyun-Mi Kim, Kyeyoon Lee, Hyunsik Hwang, Nikita Bhatnagar, Dool Yi Kim, In Sun Yoon, Myung-Ok Byun, Sun Tae Kim, Ki‐Hong Jung, Beom-Gi Kim
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2407-9-409

Impact of biospecimens handling on biomarker research in breast cancer
Cited by: 84
Author(s): Loris De Cecco, Valeria Musella, Silvia Veneroni, Vera Cappelletti, Italia Bongarzone, Maurizio Callari, Barbara Valeri, Marco A. Pierotti, Maria Grazia Daidone
Software Mentions: 1
Published: over 16 years ago

10.3390/microarrays4040454

Genomic-Wide Analysis with Microarrays in Human Oncology
Cited by: 10
Author(s): Kenichi Inaoka, Yoshikuni Inokawa, Shuji Nomoto
Software Mentions: 1
Published: over 10 years ago

10.3390/microarrays3040322

Variation of RNA Quality and Quantity Are Major Sources of Batch Effects in Microarray Expression Data
Cited by: 10
Author(s): Mario Fasold, Hans Binder
Software Mentions: 1
Published: over 11 years ago

10.3390/metabo2040983

Metabolic Consequences of TGFb Stimulation in CulturedPrimary Mouse Hepatocytes Screened from Transcript Data with ModeScore
Cited by: 3
Author(s): Andreas Hoppe, Iryna Ilkavets, Steven Dooley, Hermann−Georg Holzhütter
Software Mentions: 1
Published: over 13 years ago

10.1186/1475-2859-6-4

A perspective on microarrays: current applications, pitfalls, and potential uses
Cited by: 90
Author(s): Pratik Jaluria, Κωνσταντίνος Κωνσταντόπουλος, Michael J. Betenbaugh, Joseph Shiloach
Software Mentions: 1
Published: about 19 years ago

10.1099/mic.0.000423

Identification of new members of the Escherichia coli K-12 MG1655 SlyA regulon
Cited by: 19
Author(s): Thomas D Curran, Fatima Abacha, Stephen P Hibberd, Matthew D. Rolfe, Melissa M. Lacey, Jeffrey Green
Software Mentions: 1
Published: about 9 years ago

10.1099/mic.0.028282-0

The pneumococcal response to oxidative stress includes a role for Rgg
Cited by: 45
Author(s): Magda E. Bortoni, Vanessa S. Terra, Jason Hinds, Peter W. Andrew, Hasan Yeşilkaya
Software Mentions: 1
Published: over 16 years ago

10.1099/mic.0.000296

Developmental delay in a Streptomyces venezuelae glgE null mutant is associated with the accumulation of α-maltose 1-phosphate
Cited by: 11
Author(s): Farzana Miah, Maureen J. Bibb, J. Elaine Barclay, Kim Findlay, Stephen Bornemann
Software Mentions: 1
Published: almost 10 years ago

10.1097/MD.0000000000004085

Expression profile of SIX family members correlates with clinic-pathological features and prognosis of breast cancer
Cited by: 32
Author(s): Xu Han, Kong Ju Wu, Yi Jun Tian, Qian Liu, Na Han, Xue Lian He, Xun Yuan, Gen Sheng Wu, Kai Wu
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.kint.2018.11.040

Lrig2 and Hpse2, mutated in urofacial syndrome, pattern nerves in the urinary bladder
Cited by: 25
Author(s): Neil Roberts, Emma Hilton, Filipa Lopes, Subir Singh, Michael J. Randles, Natalie J. Gardiner, Karl Chopra, Riccardo Coletta, Zunera Bajwa, Robert J. Hall, Wyatt W. Yue, Franz Schaefer, Stefanie Weber, Roger Henriksson, Helen M. Stuart, Håkan Hedman, William G. Newman, Adrian S. Woolf
Software Mentions: 1
Published: almost 7 years ago

10.1186/2040-2392-5-21

Altered brain gene expression but not steroid biochemistry in a genetic mouse model of neurodevelopmental disorder
Cited by: 20
Author(s): Simon Trent, JP Fry, Obah A. Ojarikre, William Davies
Software Mentions: 1
Published: about 12 years ago

10.1093/molbev/msu299

Expression Profile and Gene Age Jointly Shaped the Genome-Wide Distribution of Premature Termination Codons in a Drosophila melanogaster Population
Cited by: 19
Author(s): Haiwang Yang, Bin He, Huijing Ma, Shun-Chern Tsaur, Chenyu Ma, Ying Wu, Chau‐Ti Ting, Yong E. Zhang
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms22126505

Screen Key Genes Associated with Distraction-Induced Osteogenesis of Stem Cells Using Bioinformatics Methods
Cited by: 2
Author(s): Jishizhan Chen, Jia Hua, Wenhui Song
Software Mentions: 1
Published: almost 5 years ago

10.1186/1756-6606-6-12

Synaptosomal-associated protein 25 mutation induces immaturity of the dentate granule cells of adult mice
Cited by: 51
Author(s): Koji Ohira, Katsunori Kobayashi, Keiko Toyama, Hironori Nakamura, Hirotaka Shoji, Keizo Takao, Rika Takeuchi, Shun Yamaguchi, Masakazu Kataoka, Shintaro Otsuka, Masami Takahashi, Tsuyoshi Miyakawa
Software Mentions: 1
Published: about 13 years ago

10.1186/1476-4598-9-123

MicroRNAs involvement in fludarabine refractory chronic lymphocytic leukemia
Cited by: 98
Author(s): Manuela Ferracin, Barbara Zagatti, Lara Rizzotto, Francesco Cavazzini, Angelo Veronese, Maria Ciccone, Elena Saccenti, Laura Lupini, Andrea Grilli, Cristiano De Angeli, Massimo Negrini, Antonio Cuneo
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1000066

The Uptake of Apoptotic Cells Drives Coxiella burnetii Replication and Macrophage Polarization: A Model for Q Fever Endocarditis
Cited by: 49
Author(s): Marie Benoit, Éric Ghigo, Christian Capo, Didier Raoult, Jean‐Louis Mège
Software Mentions: 1
Published: almost 18 years ago

10.1186/1479-5876-9-72

SULFs in human neoplasia: implication as progression and prognosis factors
Cited by: 68
Author(s): Caroline Bret, Jérôme Moreaux, Jean‐François Schved, Dirk Hose, Bernard Klein
Software Mentions: 1
Published: almost 15 years ago

Projects: bioconductor: ArrayExpress

Science Score: 83/100

Bonuses:

Penalties:

Papers Mentioning ArrayExpress 1,962