bioconductor: ArrayExpress | Projects

10.3389/fimmu.2016.00272

Transcriptome Analysis of B Cell Immune Functions in Periodontitis: Mucosal Tissue Responses to the Oral Microbiome in Aging
Cited by: 22
Author(s): Jeffrey L. Ebersole, Sreenatha Kirakodu, M. John Novak, Luis Orraca, Janis Gonzalez Martinez, Larry L. Cunningham, Mark V. Thomas, Arnold J. Stromberg, Subramanya Pandruvada, Octavio A. González
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2018.00032

Induction of Short NFATc1/αA Isoform Interferes with Peripheral B Cell Differentiation
Cited by: 4
Author(s): Khalid Muhammad, Ronald Rudolf, Duong Anh Thuy Pham, Stefan Klein-Heßling, Katsuyoshi Takata, Nobuko Matsushita, Volker Ellenrieder, Eisaku Kondo, Edgar Serfling
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2105-8-52

PASSIM – an open source software system for managing information in biomedical studies
Cited by: 23
Author(s): Juris Vīksna, Edgars Celms, Mārtiņš Opmanis, Kārlis Podnieks, Pēteris Ručevskis, Andris Zarins, Amy Barrett, Sudeshna Guha Neogi, Maria Krestyaninova, Mark I. McCarthy, Alvis Brāzma, Ugis Sarkans
Software Mentions: 1
Published: almost 18 years ago

10.3389/fimmu.2017.00479

Co-Inflammatory Roles of TGFβ1 in the Presence of TNFα Drive a Pro-inflammatory Fate in Mesenchymal Stem Cells
Cited by: 25
Author(s): Shalom Lerrer, Yulia Liubomirski, Alexander Bott, Khalid Abnaof, Nino Oren, Afsheen Yousaf, Cindy Körner, Tsipi Meshel, Stefan Wiemann, Adit Ben‐Baruch
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-13-146

Meta-analysis of Chicken – Salmonella infection experiments
Cited by: 11
Author(s): M.F.W. te Pas, Ina Hulsegge, Dirkjan Schokker, M.A. Smits, Mark Fife, Rima Zoorob, Marie-Laure Endale, Johanna M.J. Rebel
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-9-324

Topoisomerase II inhibition involves characteristic chromosomal expression patterns
Cited by: 7
Author(s): Susanne Reymann, Jürgen Borlak
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2105-9-S6-S18

ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses
Cited by: 29
Author(s): Todd H. Stokes, J.T. Torrance, Henry Li, May D. Wang
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-15-333

MicroRNA profiling of rats with ochratoxin A nephrotoxicity
Cited by: 47
Author(s): Dai Qiu, Jingbo Zhao, Xiaozhe Qi, Wentao Xu, Xiaoyun He, Mingzhang Guo, Harsh Dweep, Wen‐Hsing Cheng, Yunbo Luo, Kai Xia, Norbert Gretz, Kunlun Huang
Software Mentions: 1
Published: over 10 years ago

10.1186/s13046-016-0403-2

Microarray-based identification of genes associated with cancer progression and prognosis in hepatocellular carcinoma
Cited by: 33
Author(s): Fuqiang Yin, Liuyang Shu, Xia Liu, Ting Li, Tao Peng, Yueli Nan, Shu Li, Xianmin Zeng, Xiaoqiang Qiu
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.585414

Oral Microbiome and Gingival Tissue Apoptosis and Autophagy Transcriptomics
Cited by: 10
Author(s): Jeffrey L. Ebersole, Sreenatha Kirakodu, Elliot Neumann, Luis Orraca, Janis Gonzalez Martinez, Octavio A. González
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2020.00438

Dual Pro- and Anti-Inflammatory Features of Monocyte-Derived Dendritic Cells
Cited by: 12
Author(s): Waqas Azeem, Ragnhild Maukon Bakke, Silke Appel, Anne Margrete Øyan, Karl‐Henning Kalland
Software Mentions: 1
Published: over 4 years ago

10.1186/s13046-016-0477-x

Nomogram integrating gene expression signatures with clinicopathological features to predict survival in operable NSCLC: a pooled analysis of 2164 patients
Cited by: 18
Author(s): Jianhui Wu, Lizhi Zhou, Lixia Huang, Jincui Gu, Shaoli Li, Baomo Liu, Jinlun Feng, Yunyun Zhou
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-10-119

Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes
Cited by: 58
Author(s): José Osorio y Fortéa, Emilie de La Llave, Béatrice Regnault, Jean‐Yves Coppée, Geneviève Milon, Thierry Lang, Éric Prina
Software Mentions: 1
Published: over 15 years ago

10.3389/fimmu.2020.00380

Development of a Bioinformatics Framework for Identification and Validation of Genomic Biomarkers and Key Immunopathology Processes and Controllers in Infectious and Non-infectious Severe Inflammatory Response Syndrome
Cited by: 14
Author(s): Dong Tong, Karen E. Kempsell, Tamás Szakmány, Graham Ball
Software Mentions: 1
Published: over 4 years ago

10.1186/s13046-017-0568-3

miR-500a-3p promotes cancer stem cells properties via STAT3 pathway in human hepatocellular carcinoma
Cited by: 60
Author(s): Chonghe Jiang, Jianting Long, Baoxian Liu, Ming Xu, Wei Wang, Xian-Jin Xie, Xiaolin Wang, Ming Kuang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-6-174

Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies
Cited by: 137
Author(s): Heenam Stanley Kim, Mark A. Schell, Yan Yu, Ricky L. Ulrich, Saul Sarria, William C. Nierman, David DeShazer
Software Mentions: 1
Published: almost 19 years ago

10.3389/fmed.2020.527433

Distinct miRNA Gene Expression Profiles Among the Nodule Tissues of Lung Sarcoidosis, Tuberculous Lymphadenitis and Normal Healthy Control Individuals
Cited by: 2
Author(s): Yunan Zhao, Wei Li, Qin Zhang, Yan Yin, Chuanjia Yang, Wen-Xiang Xu, Jian Kang, Ruiqun Qi, Gang Hou
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2019.01157

Inactivation of farR Causes High Rhodomyrtone Resistance and Increased Pathogenicity in Staphylococcus aureus
Cited by: 13
Author(s): Minh Thu Nguyen, Jongkon Saising, Paula María Tribelli, Mulugeta Nega, Seydina M. Diène, Patrice François, Jacques Schrenzel, Cathrin Spröer, Boyke Bunk, Patrick Ebner, Tobias Hertlein, Nimerta Kumari, Thomas Härtner, Dorothee Wistuba, Supayang Piyawan Voravuthikunchai, Ulrike Mäder, Knut Ohlsen, Friedrich Götz
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.02039

A Novel TetR-Like Transcriptional Regulator Is Induced in Acid-Nitrosative Stress and Controls Expression of an Efflux Pump in Mycobacteria
Cited by: 9
Author(s): Filomena Perrone, Barbara De Siena, Lidia Muscariello, Sharon L. Kendall, Simon J. Waddell, Margherita Sacco
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2016.00759

The Chromatin of Candida albicans Pericentromeres Bears Features of Both Euchromatin and Heterochromatin
Cited by: 13
Author(s): Verónica Freire-Benéitez, R. Jordan Price, Alessia Buscaino
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-14-799

Chronic parasitization by Nosema microsporidia causes global expression changes in core nutritional, metabolic and behavioral pathways in honey bee workers (Apis mellifera)
Cited by: 85
Author(s): Holly L. Holt, Katherine A. Aronstein, Christina M. Grozinger
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13046-017-0642-x

Drug repurposing for the treatment of glioblastoma multiforme
Cited by: 56
Author(s): Claudia Abbruzzese, Silvia Matteoni, Michele Signore, Luca Cardone, Kavindra Nath, Jerry D. Glickson, Marco G. Paggi
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.01952

Coumarin Reduces Virulence and Biofilm Formation in Pseudomonas aeruginosa by Affecting Quorum Sensing, Type III Secretion and C-di-GMP Levels
Cited by: 53
Author(s): Yunhui Zhang, Andrea Saß, Heleen Van Acker, Jasper Wille, Bruno Verhasselt, Filip Van Nieuwerburgh, Volkhard Kaever, Aurélie Crabbé, Tom Coenye
Software Mentions: 1
Published: over 6 years ago

10.1186/s13046-019-1147-6

Anti-CD166/4-1BB chimeric antigen receptor T cell therapy for the treatment of osteosarcoma
Cited by: 42
Author(s): Yitian Wang, Wei Yu, Jian Zhu, Junjie Wang, Kaishun Xia, Chengzhen Liang, Huimin Tao
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-10-441

The Medicago truncatula gene expression atlas web server
Cited by: 172
Author(s): Ji He, Vagner A. Benedito, Mingyi Wang, J. D. Murray, Patrick Xuechun Zhao, Yuhong Tang, Michael K. Udvardi
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-9-628

Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality
Cited by: 13
Author(s): Adam Ertel, Aydın Tözeren
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2105-11-610

BiologicalNetworks 2.0 - an integrative view of genome biology data
Cited by: 21
Author(s): Sergey Kozhenkov, Yulia Dubinina, Mayya Sedova, Amarnath Gupta, Julia Ponomarenko, Michael Baitaluk
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2018.00763

An sRNA and Cold Shock Protein Homolog-Based Feedforward Loop Post-transcriptionally Controls Cell Cycle Master Regulator CtrA
Cited by: 12
Author(s): Marta Garrido, Jan-Philip Schlüter, Lars O. Loehr, Uwe Linne, Stefan P. Albaum, Josè I. Jiménez-Zurdo, Anke Becker
Software Mentions: 1
Published: over 6 years ago

10.1002/ijc.25688

Zinc deficiency activates S100A8 inflammation in the absence of COX‐2 and promotes murine oral‐esophageal tumor progression
Cited by: 37
Author(s): Shao Gui Wan, Cristian Taccioli, Yubao Jiang, Hongping Chen, Karl J. Smalley, Kun Huang, Xiu Ping Liu, John L. Farber, Carlo M. Croce, Louise Y.Y. Fong
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2164-11-714

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources
Cited by: 22
Author(s): Camille Rustenholz, Pete E. Hedley, Jenny Morris, Frédéric Choulet, Catherine Feuillet, Robbie Waugh, Etienne Paux
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-12-452

Histological and global gene expression analysis of the 'lactating' pigeon crop
Cited by: 43
Author(s): Meagan J Gillespie, Volker Häring, Kenneth A. McColl, Paul Monaghan, John A. Donald, Kevin R. Nicholas, Robert J. Moore, Tamsyn M. Crowley
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-13-407

Comparative genomics among Saccharomyces cerevisiae × Saccharomyces kudriavzevii natural hybrid strains isolated from wine and beer reveals different origins
Cited by: 75
Author(s): David Peris, Christian A. Lopes, Carmela Belloch, Amparo Querol, Eladio Barrio
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-15-649

Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation
Cited by: 28
Author(s): Alison F. Richard, Paul Lyons, James E. Peters, Daniele Biasci, Shaun Flint, James C. Lee, Eoín McKinney, Richard M. Siegel, Kenneth G. C. Smith
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-11-142

TobEA: an atlas of tobacco gene expression from seed to senescence
Cited by: 61
Author(s): Kieron D. Edwards, Aureliano Bombarely, Geraint W. Story, F H Allen, Lukas A. Mueller, Steve Coates, Louise Jones
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-10-226

Information management for high content live cell imaging
Cited by: 4
Author(s): Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Mike White, Douglas B. Kell, Norman W. Paton
Software Mentions: 1
Published: over 15 years ago

10.3389/fninf.2014.00051

Allen Brain Atlas-Driven Visualizations: a web-based gene expression energy visualization tool
Cited by: 11
Author(s): Andrew Zaldivar, Jeffrey L. Krichmar
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-11-343

Regulation of the cardiomyocyte transcriptome vs translatome by endothelin-1 and insulin: translational regulation of 5' terminal oligopyrimidine tract (TOP) mRNAs by insulin
Cited by: 15
Author(s): Thomais Markou, Andrew Keith Marshall, Timothy E. Cullingford, El Li Tham, Peter H. Sugden, Angela Clerk
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-11-709

Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans
Cited by: 62
Author(s): Jessica Cleiss-Arnold, Sandrine Koechler, Caroline Proux, Marie‐Laure Fardeau, Marie‐Agnès Dillies, Jean‐Yves Coppée, Florence Arsène-Ploetze, Philippe Bertin
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-8-70

Gene expression profiling of human mesenchymal stem cells derived from bone marrow during expansion and osteoblast differentiation
Cited by: 338
Author(s): Birgit Kulterer, Gerald Friedl, Anita Jandrositz, Fátima Sánchez‐Cabo, Andreas Prokesch, Christine Paar, Marcel Scheideler, Reinhard Windhager, Karl‐Heinz Preisegger, Zlatko Trajanoski
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-9-375

Pooling breast cancer datasets has a synergetic effect on classification performance and improves signature stability
Cited by: 76
Author(s): Martin H. van Vliet, Fabien Reyal, Hugo M. Horlings, Marc J. van de Vijver, Marcel J. T. Reinders, Lodewyk Wessels
Software Mentions: 1
Published: almost 17 years ago

10.3389/fonc.2019.01515

CXCL1 as an Unfavorable Prognosis Factor Negatively Regulated by DACH1 in Non-small Cell Lung Cancer
Cited by: 24
Author(s): Shengnan Yu, Ming Yi, Lei Xu, Shuang Qin, An‐Ping Li, Kongming Wu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2017.00332

Human Epididymis Protein 4 Promotes Events Associated with Metastatic Ovarian Cancer via Regulation of the Extracelluar Matrix
Cited by: 19
Author(s): Jennifer Ribeiro, Hilary Gaudet, Mehreen Ali Khan, Christoph Schorl, Nicole James, M. Oliver, Paul DiSilvestro, Richard G. Moore, Naohiro Yano
Software Mentions: 1
Published: almost 7 years ago

10.3389/fonc.2019.00026

EYA2 Correlates With Clinico-Pathological Features of Breast Cancer, Promotes Tumor Proliferation, and Predicts Poor Survival
Cited by: 16
Author(s): Hanxiao Xu, Yanmei Jiao, Ming Yi, Wei Zhao, Zeyu Wu
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-10-324

Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
Cited by: 28
Author(s): Anita Grigoriadis, Gavin R. Oliver, Austin Tanney, Howard Kendrick, Matthew J. Smalley, Parmjit Jat, A. Munro Neville
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-9-121

Transcriptome analysis of grain development in hexaploid wheat
Cited by: 183
Author(s): Yongfang Wan, Rebecca L Poole, Alison K. Huttly, C. Toscano-Underwood, Kevin A. Feeney, S. J. Welham, M. J. Gooding, Clare Mills, Keith J. Edwards, Peter R. Shewry, R. A. C. Mitchell
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-7-266

Novel design and controls for focused DNA microarrays: applications in quality assurance/control and normalization for the Health Canada ToxArray™
Cited by: 14
Author(s): Carole L. Yauk, Andrew Williams, Sherri E. Boucher, Lynn Berndt, Gu Zhou, Jiangxia Zheng, Andrea Rowan-Carroll, Hongyan Dong, Iain B. Lambert, George R. Douglas, Craig L.J. Parfett
Software Mentions: 1
Published: about 18 years ago

10.1186/s12864-015-1342-6

The recent escalation in strength of pyrethroid resistance in Anopheles coluzzi in West Africa is linked to increased expression of multiple gene families
Cited by: 80
Author(s): Hyacinthe K. Toé, N’Falé Sagnon, Roch K. Dabiré, Hilary Ranson, Christopher M. Jones
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-14-376

Time-dependent changes in gene expression induced by secreted amyloid precursor protein-alpha in the rat hippocampus
Cited by: 35
Author(s): Margaret M. Ryan, Gary P. Morris, Bruce G. Mockett, Katie Bourne, Wickliffe C. Abraham, Warren P. Tate, Joanna M. Williams
Software Mentions: 1
Published: almost 12 years ago

10.3389/fonc.2021.605884

Exosomal LncRNA LBX1-AS1 Derived From RBPJ Overexpressed-Macrophages Inhibits Oral Squamous Cell Carcinoma Progress via miR-182-5p/FOXO3
Cited by: 17
Author(s): Yilong Ai, Haigang Wei, Si-Pei Wu, Zhe Tang, Xia Li, Chen Zou
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-14-336

A simple and reproducible breast cancer prognostic test
Cited by: 47
Author(s): Luigi Marchionni, Bahman Afsari, Donald Geman, Jeffrey T. Leek
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-16-S1-S11

Transcriptomics profiling study of breast cancer from Kingdom of Saudi Arabia revealed altered expression of Adiponectin and Fatty Acid Binding Protein4: Is lipid metabolism associated with breast cancer?
Cited by: 25
Author(s): Adnan Merdad, Sajjad Karim, Hans-Juergen Schulten, Jayapal Manikandan, Ashraf Dallol, Abdelbaset Buhmeida, Fatima Al-Thubaity, Mamdooh A GariI, Adeel Chaudhary, Adel M. Abuzenadah, Mohammed Al‐Qahtani
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms11093397

Practical Application of Toxicogenomics for Profiling Toxicant-Induced Biological Perturbations
Cited by: 21
Author(s): Naoki Kiyosawa, Sunao Manabe, Takashi Yamoto, Atsushi Sanbuissho
Software Mentions: 1
Published: about 14 years ago

10.3389/fonc.2020.00044

Clinical Significance of Circulating miR-1273g-3p and miR-122-5p in Pancreatic Cancer
Cited by: 19
Author(s): Tommaso Mazza, Domenica Gioffreda, Andrea Fontana, Tommaso Biagini, Massimo Carella, Orazio Palumbo, Evaristo Maiello, Francesca Bazzocchi, Angelo Andriulli, Francesca Tavano
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2020.00068

Comprehensive Review of Web Servers and Bioinformatics Tools for Cancer Prognosis Analysis
Cited by: 70
Author(s): Hong Zheng, Guosen Zhang, Lu Zhang, Qiang Wang, Huimin Li, Yali Han, Longxiang Xie, Zhongyi Yan, Yongqiang Li, Yang An, H. Dong, Wan Zhu, Xiangqian Guo
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2019.00145

Spheroid-Induced Epithelial-Mesenchymal Transition Provokes Global Alterations of Breast Cancer Lipidome: A Multi-Layered Omics Analysis
Cited by: 29
Author(s): Yun Pyo Kang, Jung-ho Yoon, Nguyen Phuoc Long, Gi‐Bang Koo, Hyunjin Noh, Seung-Jae Oh, Sae Bom Lee, Hyung Min Kim, Ji Yeon Hong, Wonjun Lee, Seul Ji Lee, Soon‐Sun Hong, Sung Won Kwon, You‐Sun Kim
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2018.00847

UBE2C Is a Potential Biomarker of Intestinal-Type Gastric Cancer With Chromosomal Instability
Cited by: 43
Author(s): Jun Zhang, Xinyu Liu, Guanzhen Yu, Lei Liu, Jiejun Wang, Xiaoyu Chen, Yuhai Bian, Yuan Ji, Xiaoyan Zhou, Yinan Chen, Jun Ji, Zhen Xiang, Li Guo, Jing‐Yuan Fang, Yihong Sun, Hui Cao, Zhenggang Zhu, Yingyan Yu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-2537-1

On the genome base composition of teleosts: the effect of environment and lifestyle
Cited by: 14
Author(s): Andrea Tarallo, Claudia Angelini, Remo Sanges, Mitsuharu Yagi, Claudio Agnisola, Giuseppe D’Onofrio
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-15-315

Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach
Cited by: 66
Author(s): Tommy Bengtsson, Deborah Weighill, Estelle Proux‐Wéra, Fredrik Levander, Svante Resjö, Dharani Dhar Burra, Laith Ibrahim Moushib, Pete E. Hedley, Erland Liljeroth, Dan Jacobson, Erik Alexandersson, Erik Andréasson
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-10-151

MIMAS 3.0 is a Multiomics Information Management and Annotation System
Cited by: 16
Author(s): Alexandre Gattiker, Leandro Hermida, Robin Liechti, Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig
Software Mentions: 1
Published: over 15 years ago

10.3389/fphar.2017.00563

Transcriptome Profiling in Systems Vascular Medicine
Cited by: 22
Author(s): Suowen Xu
Software Mentions: 1
Published: about 7 years ago

10.3389/fphar.2020.00533

Cyclooxygenase 2-Regulated Genes an Alternative Avenue to the Development of New Therapeutic Drugs for Colorectal Cancer
Cited by: 17
Author(s): Alicia M. Hidalgo-Estévez, Konstantinos Stamatakis, Marta Jiménez-Martínez, Ricardo López‐Pérez, Manuel Fresno
Software Mentions: 1
Published: over 4 years ago

10.3389/fphys.2018.00937

Blood Gene Expression and Vascular Function Biomarkers in Professional Saturation Diving
Cited by: 15
Author(s): Fatima Zohra Kiboub, Andreas Møllerløkken, Astrid Hjelde, Arnar Flatberg, Øyvind Loennechen, Ingrid Eftedal
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2019.00474

Mitochondrial Adaptations in Elderly and Young Men Skeletal Muscle Following 2 Weeks of Bed Rest and Rehabilitation
Cited by: 30
Author(s): Alessia Buso, Marina Comelli, Raffaella Picco, Miriam Isola, Benedetta Magnesa, Rado Pišot, Jörn Rittweger, Desy Salvadego, Boštjan Šimunič, Bruno Grassi, Irene Mavelli
Software Mentions: 1
Published: over 5 years ago

10.3892/ijmm.2014.2001

Integrative genomic analyses of a novel cytokine, interleukin-34 and its potential role in cancer prediction
Cited by: 30
Author(s): Bo Wang, Wei Xu, Tan Miao-lian, Xin Yan, Haiwei Yang, Tiansong Xia
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-8-208

Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits
Cited by: 22
Author(s): Carl-Johan Rubin, Johan Lindberg, Carolyn Fitzsimmons, Peter Savolainen, Per Jensen, Joakim Lundeberg, Leif C. Andersson, Andreas Kindmark
Software Mentions: 1
Published: over 17 years ago

10.1186/s12859-019-2651-6

Identification of trans-eQTLs using mediation analysis with multiple mediators
Cited by: 31
Author(s): Nayang Shan, Zuoheng Wang, Lin Hou
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-2814-z

A targeted analysis reveals relevant shifts in the methylation and transcription of genes responsible for bile acid homeostasis and drug metabolism in non-alcoholic fatty liver disease
Cited by: 20
Author(s): Helgi B. Schiöth, Adrian Boström, Susan K. Murphy, Wiebke Erhart, Jochen Hampe, Cynthia A. Moylan, Jessica Mwinyi
Software Mentions: 1
Published: over 8 years ago

10.1186/s13045-016-0339-1

The expression profile and clinic significance of the SIX family in non-small cell lung cancer
Cited by: 54
Author(s): Qian Liu, An‐Ping Li, Yijun Tian, Yu Liu, Tengfei Li, Cuntai Zhang, Jennifer D. Wu, Xinwei Han, Kongming Wu
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2021.640324

Identification and Characterization of Perennial Ryegrass (Lolium perenne) Vernalization Genes
Cited by: 2
Author(s): Rowan P. Herridge, * Samarth, Lynette Brownfield, Richard C. Macknight
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2020.00753

Light Regulation of Chlorophyll and Glycoalkaloid Biosynthesis During Tuber Greening of Potato S. tuberosum
Cited by: 12
Author(s): Haruko Okamoto, Laurence J. M. Ducreux, J. William Allwood, Pete E. Hedley, Alison J. Wright, Vidyanath Gururajan, Matthew J. Terry, Mark A. Taylor
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2016.01836

An LRR/Malectin Receptor-Like Kinase Mediates Resistance to Non-adapted and Adapted Powdery Mildew Fungi in Barley and Wheat
Cited by: 39
Author(s): Jeyaraman Rajaraman, Dimitar Douchkov, Goetz Hensel, Francesca L. Stefanato, Anna Gordon, Nelzo C. Ereful, Octav Caldararu, Andrei-José Petrescu, Jochen Kumlehn, Lesley A. Boyd, Patrick Schweizer
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2017.00445

Altered Expression of Genes Implicated in Xylan Biosynthesis Affects Penetration Resistance against Powdery Mildew
Cited by: 22
Author(s): Jamil Chowdhury, Stefanie Lück, Jeyaraman Rajaraman, Dimitar Douchkov, Neil J. Shirley, Julian G. Schwerdt, Patrick Schweizer, Geoffrey B. Fincher, Rachel A. Burton, Alan Little
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-7-489

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
Cited by: 197
Author(s): Tim Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert, Joseph A. White, Patricia L. Whetzel, Farrell Wymore, Helen Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brāzma
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2164-8-210

Using biomarker signature patterns for an mRNA molecular diagnostic of mouse embryonic stem cell differentiation state
Cited by: 1
Author(s): Daniel Y L Yap, David K. Smith, Xue W Zhang, Jeffrey Hill
Software Mentions: 1
Published: almost 18 years ago

10.3389/fpls.2017.02158

Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant
Cited by: 25
Author(s): Sven K. Nelson, Tohru Ariizumi, Camille M. Steber
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.00098

BarleyNet: A Network-Based Functional Omics Analysis Server for Cultivated Barley, Hordeum vulgare L.
Cited by: 15
Author(s): Sungho Lee, Tak H. Lee, Sunmo Yang, Insuk Lee
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2016.00903

Mining Functional Modules in Heterogeneous Biological Networks Using Multiplex PageRank Approach
Cited by: 11
Author(s): Jun Li, Patrick Xuechun Zhao
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2012.00294

Reverse Engineering: A Key Component of Systems Biology to Unravel Global Abiotic Stress Cross-Talk
Cited by: 34
Author(s): Swetlana Friedel, Björn Usadel, Nicolaus von Wirén, Nese Sreenivasulu
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2164-7-78

Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: Implications on genome evolution and plasticity
Cited by: 34
Author(s): Vattipally B Sreenu, Pankaj Kumar, Javaregowda Nagaraju, Hampapathalu A. Nagarajaram
Software Mentions: 1
Published: over 18 years ago

10.1155/2012/984346

Cell Polarity, Epithelial-Mesenchymal Transition, and Cell-Fate Decision Gene Expression in Ductal Carcinoma In Situ
Cited by: 7
Author(s): Danila Coradini, Patrizia Boracchi, Federico Ambrogi, Elia Biganzoli, Saro Oriana
Software Mentions: 1
Published: almost 13 years ago

10.3389/fpls.2019.00315

ABA-Induced Vegetative Diaspore Formation in Physcomitrella patens
Cited by: 27
Author(s): Muhammad Arif, Manuel Hiß, Marta Tomek, Hauke Busch, Rabea Meyberg, Stefanie Tintelnot, Ralf Reski, Stefan A. Rensing, Wolfgang Frank
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms140611444

Silicon Era of Carbon-Based Life: Application of Genomics and Bioinformatics in Crop Stress Research
Cited by: 6
Author(s): Man-Wah Li, Xiaofeng Qi, Meng Ni, Hon‐Ming Lam
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-10-560

ExprAlign - the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles
Cited by: 1
Author(s): Weizhong Li, Andrew Y. Gracey, Luciane V. Mello, Andy Brass, Andrew R. Cossins
Software Mentions: 1
Published: almost 15 years ago

10.1136/jitc-2019-000285

IL-6 promotes PD-L1 expression in monocytes and macrophages by decreasing protein tyrosine phosphatase receptor type O expression in human hepatocellular carcinoma
Cited by: 76
Author(s): Wenjie Zhang, Yang Liu, Zhongyi Yan, Hui Yang, Wei Sun, Yongliang Yao, Yun Chen, Runqiu Jiang
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.117.300225

A Deconvolution Protocol for ChIP-Seq Reveals Analogous Enhancer Structures on the Mouse and Human Ribosomal RNA Genes
Cited by: 30
Author(s): Jean-Clément Mars, Marianne Sabourin-Felix, Michel G. Tremblay, Tom Moss
Software Mentions: 1
Published: almost 7 years ago

10.1155/2020/8897936

SCUBE3 Is Likely a Susceptibility Gene for Systemic Lupus Erythematosus for Chinese Populations
Cited by: 2
Author(s): Yuanyuan Qi, Ya-Fei Zhao, Yunkai Zhai, Xiaoxue Zhang, Xiaoyang Wang, Xin-Ran Liu, Caixia Yan, Xianghui Ning, Zhanzheng Zhao
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2164-10-153

Learning from microarray interlaboratory studies: measures of precision for gene expression
Cited by: 9
Author(s): David L. Duewer, Wendell Jones, Laura Reid, Marc Salit
Software Mentions: 1
Published: almost 16 years ago

10.3390/genes5030726

Enterococcus faecalis Infection and Reactive Oxygen Species Down-Regulates the miR-17-92 Cluster in Gastric Adenocarcinoma Cell Culture
Cited by: 22
Author(s): Jesper A.B. Strickertsson, Lene Juel Rasmussen, Lennart Friis‐Hansen
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-10-306

Exploring temporal transcription regulation structure of Aspergillus fumigatus in heat shock by state space model
Cited by: 30
Author(s): Jin Hwan, Rui Yamaguchi, Satoru Miyano
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-8-401

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome
Cited by: 12
Author(s): Santiago P. Aubourg, Marie‐Laure Martin‐Magniette, Véronique Brunaud, Ludivine Taconnat, Frédérique Bitton, Sandrine Balzergue, Pauline E. Jullien, Mathieu Ingouff, Vincent Thareau, Thomas Schiex, Alain Lecharny, Jean-Pierre Renou
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2164-10-42

Positive correlation between gene coexpression and positional clustering in the zebrafish genome
Cited by: 28
Author(s): Yen Kaow Ng, Wei Wu, Louxin Zhang
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-12-620

An expression map for Anopheles gambiae
Cited by: 27
Author(s): Robert M. MacCallum, Seth Redmond, George K. Christophides
Software Mentions: 1
Published: almost 13 years ago

10.1111/jcmm.13023

Reduced angiogenic gene expression in morbillivirus‐triggered oncolysis in a translational model for histiocytic sarcoma
Cited by: 24
Author(s): Vanessa Maria Pfankuche, Ingo Spitzbarth, Stefanie Lapp, Reiner Ulrich, Ulrich Deschl, Arno Kalkuhl, Wolfgang Baumgärtner, Christina Puff
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.13051

Acquired TET 2 mutation in one patient with familial platelet disorder with predisposition to AML led to the development of pre‐leukaemic clone resulting in T2‐ ALL and AML ‐M0
Cited by: 10
Author(s): Vladimir T. Manchev, Hind Bouzid, Iléana Antony-Debré, Betty Leite, Guillaume Meurice, Nathalie Droin, Thomas Prébet, Régis Costello, William Vainchenker, Isabelle Plo, M’Boyba Diop, Elizabeth Macintyre, Vahid Asnafi, Rémi Favier, Véronique Baccini, Hana Raslová
Software Mentions: 1
Published: almost 8 years ago

10.1155/2018/9485285

PD-L1 Expression Predicts a Distinct Prognosis in Krukenberg Tumor with Corresponding Origins
Cited by: 10
Author(s): Haiyan Tai, Qin Yang, Zhi‐Yong Wu, Sujuan Sun, Rui Cao, Yanfeng Xi, Ran Zhao, Mengyu Zhang, Zhigang Zhang, Congjian Xu
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-9-340

Comparative transcriptomics of human multipotent stem cells during adipogenesis and osteoblastogenesis
Cited by: 87
Author(s): Marcel Scheideler, Christian Elabd, Laure‐Emmanuelle Zaragosi, Chiara Chiellini, Hubert Hackl, Fátima Sánchez‐Cabo, Sunaina Yadav, Kalina Duszka, Gerald Friedl, Christine Papak, Andreas Prokesch, Reinhard Windhager, Gérard Ailhaud, Christian Dani, Ez-Zoubir Amri, Zlatko Trajanoski
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-11-150

Identifying common prognostic factors in genomic cancer studies: A novel index for censored outcomes
Cited by: 41
Author(s): Sigrid Rouam, Thierry Moreau, Philippe Broët
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-6-178

GPX-Macrophage Expression Atlas: A database for expression profiles of macrophages challenged with a variety of pro-inflammatory, anti-inflammatory, benign and pathogen insults
Cited by: 16
Author(s): Graeme R. Grimes, Stuart Moodie, John S. Beattie, Marie Craigon, Paul Dickinson, Thorsten Forster, Andrew D. Livingston, Muriel Mewissen, Kevin A. Robertson, Alan J. Ross, Garwin K. Sing, Peter Ghazal
Software Mentions: 1
Published: almost 19 years ago

10.1172/JCI129115

Zeb1 modulates hematopoietic stem cell fates required for suppressing acute myeloid leukemia
Cited by: 29
Author(s): Alhomidi Almotiri, Hamed Ahmad A. Alzahrani, Juan Bautista Menendez-Gonzalez, Ali Abdelfattah, Badi Alotaibi, Lubaid Saleh, Adelle Greene, Mia R. F. Georgiou, Alex Gibbs, Amani Salem Alsayari, Sarab Taha, Leigh-anne Thomas, Dhruv Shah, Sarah Edkins, Peter Giles, Marc P. Stemmler, Simone Brabletz, Thomas Brabletz, Ashleigh S. Boyd, Florian A. Siebzehnrübl, Neil P. Rodrigues
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-9-221

Improved microarray gene expression profiling of virus-infected cells after removal of viral RNA
Cited by: 5
Author(s): Matthijs Raaben, Penn Whitley, Diane Bouwmeester, Robert A. Setterquist, Peter J. M. Rottier, Cornelis A. M. de Haan
Software Mentions: 1
Published: over 16 years ago

Projects: bioconductor: ArrayExpress

Papers Mentioning ArrayExpress 1,962