bioconductor: ArrayExpress | Projects

10.1186/1755-8794-2-11

Promoter methylation correlates with reduced NDRG2expression in advanced colon tumour
Cited by: 36
Author(s): Ada Piepoli, Rosa Cotugno, Giuseppe Merla, Annamaria Gentile, Bartolomeo Augello, M. Quitadamo, Antonio Merla, Anna Panza, Massimo Carella, Rosalia Maglietta, A. D’Addabbo, Nicola Ancona, Saverio Fusilli, Francesco Perri, Angelo Andriulli
Software Mentions: 1
Published: almost 17 years ago

10.1186/1755-8794-1-33

An approach to analyse the specific impact of rapamycin on mRNA-ribosome association
Cited by: 16
Author(s): Raphaël Genolet, Tanguy Araud, Laetitia Maillard, Pascale Jaquier-Gubler, Joseph Curran
Software Mentions: 1
Published: over 17 years ago

10.1186/1755-8794-2-12

Impaired immune function in Gulf War Illness
Cited by: 71
Author(s): Toni Whistler, Mary A Fletcher, William Lonergan, Xiao Rong Zeng, Jin Mann S. Lin, A. LaPerriere, Suzanne D. Vernon, Nancy G. Klimas
Software Mentions: 1
Published: almost 17 years ago

10.1186/1755-8794-3-5

Insight in modulation of inflammation in response to diclofenac intervention: a human intervention study
Cited by: 34
Author(s): Marjan J. van Erk, Suzan Wopereis, Carina M. Rubingh, T. van Vliet, Elwin Verheij, N.H.P. Cnubben, Theresa L. Pedersen, John W. Newman, Age K. Smilde, J. van der Greef, H. Hendriks, Ben van Ommen
Software Mentions: 1
Published: almost 16 years ago

10.1186/1755-8794-2-41

Functional annotations of diabetes nephropathy susceptibility loci through analysis of genome-wide renal gene expression in rat models of diabetes mellitus
Cited by: 12
Author(s): Yaomin Hu, Pamela J. Kaisaki, Karène Argoud, Steven P. Wilder, Karin J. Wallace, Peng Yeong Woon, Christine Blancher, Lise Tarnow, Per‐Henrik Groop, Samy Hadjadj, Michel Marre, Hans‐Henrik Parving, Martin Farrall, Roger D. Cox, Mark Lathrop, Nathalie Vionnet, Marie-Thérèse Bihoreau, Dominique Guyader
Software Mentions: 1
Published: over 16 years ago

10.1186/1755-8794-2-18

PrognoScan: a new database for meta-analysis of the prognostic value of genes
Cited by: 698
Author(s): Hideaki Mizuno, Koji Kitada, Katsunori Nakai, Akinori Sarai
Software Mentions: 1
Published: almost 17 years ago

10.1186/1755-8794-6-35

Genomic pathway analysis reveals that EZH2 and HDAC4 represent mutually exclusive epigenetic pathways across human cancers
Cited by: 34
Author(s): Adam L. Cohen, Stephen R. Piccolo, Luis Cheng, Rafaella Soldi, Bing Han, W. Evan Johnson, Andrea Bild
Software Mentions: 1
Published: over 12 years ago

10.1186/s12920-014-0063-z

Integrated differential transcriptome maps of Acute Megakaryoblastic Leukemia (AMKL) in children with or without Down Syndrome (DS)
Cited by: 22
Author(s): Maria Chiara Pelleri, Allison Piovesan, Maria Caracausi, Anna C. Berardi, Lorenza Vitale, Pierluigi Strippoli
Software Mentions: 1
Published: about 11 years ago

10.1186/s12920-017-0293-y

Differential gene expression in disease: a comparison between high-throughput studies and the literature
Cited by: 52
Author(s): Raul Rodriguez‐Esteban, Xiaoyu Jiang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12911-021-01634-3

A framework for validating AI in precision medicine: considerations from the European ITFoC consortium
Cited by: 18
Author(s): Rosy Tsopra, Xose M Fernandez-Suarez, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Uğur Sezerman, Marc Cuggia, Marie de Tayrac, Edvīns Miklaševičs, Lucian Mihai Itu, Marius Geantă, Lesley A. Ogilvie, Florence Godey, C. Boldisor, Boris Campillo‐Gimenez, Cosmina Cioroboiu, Costin Florian Ciușdel, Simona M. Coman, Oliver Hijano Cubelos, Alexandru Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabilès, Anita Burgun
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2180-10-106

The HP0256 gene product is involved in motility and cell envelope architecture of Helicobacter pylori
Cited by: 3
Author(s): François P. Douillard, Kevin Ryan, Michael Lane, Delphine L. Caly, Stanley A. Moore, Charles W. Penn, Jason Hinds, Paul W. O’Toole
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2180-12-212

Insight into the bacterial gut microbiome of the North American moose (Alces alces)
Cited by: 45
Author(s): Suzanne L. Ishaq, André‐Denis G. Wright
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2180-8-73

Performance of a 70-mer oligonucleotide microarray for genotyping of Campylobacter jejuni
Cited by: 20
Author(s): Sandra Rodin, Anders F. Andersson, Valtteri Wirta, Lena Eriksson, Marianne Ljungström, Britta Björkholm, Hans Lindmark, Lars Engstrand
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2180-9-246

Global transcriptional response of pig brain and lung to natural infection by Pseudorabies virus
Cited by: 7
Author(s): J. F. Yuan, Zhang Sj, Osman Jafer, RA Furlong, OE Chausiaux, Carole A. Sargent, Zhang Gh, Nabeel A. Affara
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2180-13-224

Computational approaches for discovery of common immunomodulators in fungal infections: towards broad-spectrum immunotherapeutic interventions
Cited by: 8
Author(s): Yared H. Kidane, Christopher B. Lawrence, T. M. Murali
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2180-12-104

The distribution of plasmids that carry virulence and resistance genes in Staphylococcus aureus is lineage associated
Cited by: 120
Author(s): Alex J. McCarthy, Jodi A. Lindsay
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2180-7-88

Comparative gene expression profiling in two congenic mouse strains following Bordetella pertussis infection
Cited by: 7
Author(s): Sander Banus, Rob J. Vandebriel, Jeroen L. A. Pennings, Eric R. Gremmer, Piet W. Wester, Henk J. van Kranen, Timo M. Breit, Peter Démant, Frits R. Mooi, Barbara Hoebee, Tjeerd G. Kimman
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2199-11-95

Overexpression of miR-128 specifically inhibits the truncated isoform of NTRK3 and upregulates BCL2 in SH-SY5Y neuroblastoma cells
Cited by: 78
Author(s): Monia Guidi, Margarita Muiños‐Gimeno, Birgit Kagerbauer, Eulàlia Martı́, Xavier Estivill, Yolanda Espinosa‐Parrilla
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2199-8-119

Checkpoint effects and telomere amplification during DNA re-replication in fission yeast
Cited by: 10
Author(s): Katie L Mickle, Anna Maria Oliva, Joel A. Huberman, Janet Leatherwood
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2199-8-112

Checkpoint independence of most DNA replication origins in fission yeast
Cited by: 36
Author(s): Katie L Mickle, Sunita Ramanathan, Adam P. Rosebrock, Anna Maria Oliva, Amna Chaudari, Chulee Yompakdee, David Scott, Janet Leatherwood, Joel A. Huberman
Software Mentions: 1
Published: about 19 years ago

10.1186/1471-2474-13-130

Expression profile analysis of mycotoxin-related genes in cartilage with endemic osteochondropathy kashin-beck disease
Cited by: 7
Author(s): Na Zhang, Xiong Guo, Weizhuo Wang, Shixun Wu, Wei-Juan Ma, Yan Hua
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2202-8-34

Reduced expression of TAC1, PENK and SOCS2 in Hcrtr-2 mutated narcoleptic dog brain
Cited by: 7
Author(s): Julia Hedlund Lindberg, Peter Saetre, Seiji Nishino, Emmanuel Mignot, Elena Jazin
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2202-11-14

Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation
Cited by: 365
Author(s): Tim R. Mercer, Irfan A. Qureshi, Şölen Gokhan, Marcel E. Dinger, Guangyu Li, John S. Mattick, Mark F. Mehler
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2202-6-28

Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method
Cited by: 12
Author(s): Maria Sievertzon, Valtteri Wirta, Alex Mercer, Konstantinos Meletis, Rikard Erlandsson, Lilian Wikström, Jonas Frisén, Joakim Lundeberg
Software Mentions: 1
Published: almost 21 years ago

10.1186/s12903-019-0738-0

Investigation of molecular biomarker candidates for diagnosis and prognosis of chronic periodontitis by bioinformatics analysis of pooled microarray gene expression datasets in Gene Expression Omnibus (GEO)
Cited by: 26
Author(s): Asami Suzuki, Tetsuro Horie, Yukihiro Numabe
Software Mentions: 1
Published: almost 7 years ago

10.1186/2050-6511-15-5

Skin sensitizers differentially regulate signaling pathways in MUTZ-3 cells in relation to their individual potency
Cited by: 34
Author(s): Ann-Sofie Albrekt, Henrik Johansson, Anna Börje, Carl Borrebaeck, Malin Lindstedt
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2229-9-28

Differential patterns of reactive oxygen species and antioxidative mechanisms during atrazine injury and sucrose-induced tolerance in Arabidopsis thaliana plantlets
Cited by: 264
Author(s): Fanny Ramel, Cécile Sulmon, Matthieu Bogard, Ivan Couée, Gwenola Gouesbet
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2229-10-108

Expression profiling of Crambe abyssinicaunder arsenate stress identifies genes and gene networks involved in arsenic metabolism and detoxification
Cited by: 66
Author(s): Bibin Paulose, Suganthi Kandasamy, Om Parkash Dhankher
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2229-14-155

Salicylic acid signaling inhibits apoplastic reactive oxygen species signaling
Cited by: 61
Author(s): Enjun Xu, Mikael Brosché
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2229-11-39

Prediction of transcriptional regulatory elements for plant hormone responses based on microarray data
Cited by: 45
Author(s): Yoshiharu Y. Yamamoto, Yohei Yoshioka, Mitsuro Hyakumachi, Kyonoshin Maruyama, Kazuko Yamaguchi-Shinozaki, Mutsutomo Tokizawa, Hiroyuki Koyama
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2229-12-17

Organ specificity and transcriptional control of metabolic routes revealed by expression QTL profiling of source-sink tissues in a segregating potato population
Cited by: 16
Author(s): Bjorn Kloosterman, A. M. Anithakumari, Pierre-Yves Chibon, Marian Oortwijn, Gerard C van der Linden, R.G.F. Visser, Christian W.B. Bachem
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2229-12-204

Expression of geminiviral AC2 RNA silencing suppressor changes sugar and jasmonate responsive gene expression in transgenic tobacco plants
Cited by: 39
Author(s): Arto Soitamo, Balaji Jada, Kirsi Lehto
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2229-10-202

Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.)
Cited by: 59
Author(s): Pete E. Hedley, Joanne Russell, Linzi Jorgensen, Sandra Gordon, Jenny Morris, Christine A. Hackett, Linda Cardle, Rex Brennan
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2229-9-15

Validation of candidate genes putatively associated with resistance to SCMV and MDMV in maize (Zea mays L.) by expression profiling
Cited by: 53
Author(s): Anna Użarowska, Giuseppe Dionisio, Barbara Sarholz, Hans‐Peter Piepho, Ming Xu, Christina Ingvardsen, G. Wenzel, Thomas Lübberstedt
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2229-9-19

TRUNCATULIX - a data warehouse for the legume community
Cited by: 11
Author(s): Kolja Henckel, Kai J. Runte, Thomas Bekel, Michael Dondrup, Tobias Jakobi, H. Küster, Alexander Goesmann
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2229-7-56

Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis
Cited by: 151
Author(s): Xiaoping Tan, Blake C. Meyers, Alexander Kozik, Marilyn A. L. West, Michèle Morgante, Dina A. St. Clair, Andrew F. Bent, Richard W. Michelmore
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2229-12-74

Effects of yeast trehalose-6-phosphate synthase 1 on gene expression and carbohydrate contents of potato leaves under drought stress conditions
Cited by: 57
Author(s): Mihály Kondrák, Ferenc Marincs, Ferenc Antal, Zsófia Juhász, Zsófia Bánfalvi
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2229-8-76

Articulation of three core metabolic processes in Arabidopsis: Fatty acid biosynthesis, leucine catabolism and starch metabolism
Cited by: 70
Author(s): Wieslawa I. Mentzen, Peng Jisheng, Nick Ransom, Basil J. Nikolau, Eve Syrkin Wurtele
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2229-10-77

Large impact of the apoplast on somatic embryogenesis in Cyclamen persicum offers possibilities for improved developmental control in vitro
Cited by: 30
Author(s): Claudia Hoenemann, Sandra Richardt, Katja Krüger, Andreas Zimmer, Annette Hohe, Stefan A. Rensing
Software Mentions: 1
Published: almost 16 years ago

10.1186/1753-6561-5-S4-S4

Jejunal gene expression patterns correlate with severity of systemic infection in chicken
Cited by: 4
Author(s): Dirkjan Schokker, M.A. Smits, Johanna M.J. Rebel
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-244X-7-46

Inflammation-related genes up-regulated in schizophrenia brains
Cited by: 245
Author(s): Peter Saetre, Lina Emilsson, Elin Axelsson, Johan Kreuger, Eva Lindholm, Elena Jazin
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2466-13-63

Altered microRNA expression profile during epithelial wound repair in bronchial epithelial cells
Cited by: 15
Author(s): Aleksandra Szczepankiewicz, Peter M. Lackie, John W. Holloway
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-0500-3-16

Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics
Cited by: 2
Author(s): Michael Gruenberger, Rudi Alberts, Damian Smedley, Morris A. Swertz, Paul N. Schofield, Klaus Schughart
Software Mentions: 1
Published: about 16 years ago

10.1186/1756-0500-5-401

Critical COPD respiratory illness is linked to increased transcriptomic activity of neutrophil proteases genes
Cited by: 33
Author(s): Raquel Almansa, Lorenzo Socías, Monica Sanchez-Garcia, Ignacio Martín‐Loeches, Milagros Del Olmo, David Andaluz‐Ojeda, Felipe Bobillo, Lucía Rico, Agueda Herrero, Vicente Roig, C Alicia San-Jose, Sara Rosich, Julia Barbado, Carlos Disdier, Raúl Ortíz de Lejarazu, Maria C Gallegos, Victoria Fernández, Jesús F. Bermejo-Martín
Software Mentions: 1
Published: over 13 years ago

10.1186/1756-0500-7-148

Comparison of alternative mixture model methods to analyze bacterial CGH experiments with multi-genome arrays
Cited by: 0
Author(s): Liliana Sofia Mendonça Cardoso, Cláudia Elvas Suissas, Mário Ramirez, Marília Antunes, Francisco Pinto
Software Mentions: 1
Published: almost 12 years ago

10.1186/1756-0500-4-78

Genome-wide transcriptomic analysis of the response to nitrogen limitation in Streptomyces coelicolor A3(2)
Cited by: 22
Author(s): Richard A. Lewis, Sanjay Shahi, Emma Laing, Giselda Bucca, Georgios Efthimiou, Michael E. Bushell, Colin P. Smith
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12918-018-0579-5

New perspectives: systems medicine in cardiovascular disease
Cited by: 13
Author(s): Frank Krämer, Steffen Just, Tanja Zeller
Software Mentions: 1
Published: almost 8 years ago

10.1186/1752-0509-5-68

Global network analysis of drug tolerance, mode of action and virulence in methicillin-resistant S. aureus
Cited by: 37
Author(s): Ian M. Overton, Shirley A. Graham, Katherine A. Gould, Jason Hinds, Catherine H. Botting, Sally L. Shirran, Geoffrey J. Barton, Peter J. Coote
Software Mentions: 1
Published: about 15 years ago

10.1186/1752-0509-9-S2-S3

KPP: KEGG Pathway Painter
Cited by: 18
Author(s): Ganiraju C. Manyam, Aybike Birerdinc, Ancha Baranova
Software Mentions: 1
Published: almost 11 years ago

10.1186/1752-0509-3-86

Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network
Cited by: 39
Author(s): Osnat Atias, Benny Chor, Daniel Chamovitz
Software Mentions: 1
Published: over 16 years ago

10.1186/1752-0509-4-86

Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems
Cited by: 7
Author(s): Michał Dąbrowski, Norbert Dojer, Małgorzata Zawadzka, Jakub Mieczkowski, Bożena Kamińska
Software Mentions: 1
Published: over 15 years ago

10.1186/1752-0509-5-125

A Systems Biology Strategy for Predicting Similarities and Differences of Drug Effects: Evidence for Drug-specific Modulation of Inflammation in Atherosclerosis
Cited by: 15
Author(s): Robert Kleemann, Svetlana Bureeva, Ally Perlina, Jim Kaput, Lars Verschuren, Peter Y. Wielinga, Eva Hurt-Camejo, Yuri Nikolsky, Ben van Ommen, Teake Kooistra
Software Mentions: 1
Published: about 15 years ago

10.1186/1752-0509-4-62

Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis
Cited by: 51
Author(s): Elizabeth Allen, Annick Moing, Timothy M. D. Ebbels, Mickaël Maucourt, A. D. Tomos, Dominique Rolin, Mark A. Hooks
Software Mentions: 1
Published: over 15 years ago

10.1186/1752-0509-4-164

ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-work
Cited by: 69
Author(s): Gregor Warsow, Boris Greber, Steffi Falk, Clemens Harder, Marcin Siatkowski, Sandra Schordan, Anup Som, Nicole Endlich, Hans R. Schöler, Dirk Repsilber, Karlhans Endlich, Georg Fuellen
Software Mentions: 1
Published: about 15 years ago

10.1186/1752-0509-2-58

Short time-series microarray analysis: Methods and challenges
Cited by: 43
Author(s): Xuewei Wang, Ming Tsang Wu, Lirong Zheng, Christina Chan
Software Mentions: 1
Published: over 17 years ago

10.1186/s12894-015-0056-z

An online tool for evaluating diagnostic and prognostic gene expression biomarkers in bladder cancer
Cited by: 14
Author(s): Garrett M. Dancik
Software Mentions: 1
Published: over 10 years ago

10.1186/1746-6148-6-44

Feasibility of a liver transcriptomics approach to assess bovine treatment with the prohormone dehydroepiandrosterone (DHEA)
Cited by: 19
Author(s): Jeroen C.W. Rijk, Ad Peijnenburg, Peter J.M. Hendriksen, Johan M. Van Hende, M.J. Groot, Michel W. F. Nielen
Software Mentions: 1
Published: about 16 years ago

10.1186/1756-0381-4-15

Detection of changes in gene regulatory patterns, elicited by perturbations of the Hsp90 molecular chaperone complex, by visualizing multiple experiments with an animation
Cited by: 13
Author(s): Pablo Christian Echeverria, Fedor Forafonov, Deo Prakash Pandey, Guillaume Mühlebach, Didier Picard
Software Mentions: 1
Published: over 14 years ago

10.1186/1756-0381-1-9

Fast approximate hierarchical clustering using similarity heuristics
Cited by: 18
Author(s): Meelis Kull, Jaak Vilo
Software Mentions: 1
Published: over 17 years ago

10.1186/1756-0381-7-18

ExpressionData - A public resource of high quality curated datasets representing gene expression across anatomy, development and experimental conditions
Cited by: 20
Author(s): Philip Zimmermann, Stefan Bleuler, Oliver Laule, Florian Martin, Nikolai V. Ivanov, Prisca Campanoni, Karen K. Oishi, Nicolas Lugon-Moulin, Markus Wyss, Tomás Hrúz, Wilhelm Gruissem
Software Mentions: 1
Published: over 11 years ago

10.1093/bioinformatics/btz731

Metric learning on expression data for gene function prediction
Cited by: 10
Author(s): Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
Software Mentions: 1
Published: over 6 years ago

10.1093/bioinformatics/btx739

SATORI: a system for ontology-guided visual exploration of biomedical data repositories
Cited by: 9
Author(s): Fritz Lekschas, Nils Gehlenborg
Software Mentions: 1
Published: about 8 years ago

10.1093/bioinformatics/btt108

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data
Cited by: 13
Author(s): George Y. Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji
Software Mentions: 1
Published: almost 13 years ago

10.1093/bioinformatics/btt019

CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data
Cited by: 841
Author(s): Gabriela Bindea, Jérôme Galon, Bernhard Mlecnik
Software Mentions: 1
Published: about 13 years ago

10.1093/bioinformatics/btw545

PhenomeScape: a cytoscape app to identify differentially regulated sub-networks using known disease associations
Cited by: 12
Author(s): Jamie Soul, Sara Dunn, Timothy E. Hardingham, Raymond P. Boot-Handford, Jean-Marc Schwartz
Software Mentions: 1
Published: over 9 years ago

10.1093/bioinformatics/btz959

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences
Cited by: 41
Author(s): Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie-Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo López, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Elixir Core Data Resource Forum, Niklas Blomberg, Christine Durinx, Johanna McEntyre
Software Mentions: 1
Published: about 6 years ago

10.1242/bio.047530

Forcing contacts between mitochondria and the endoplasmic reticulum extends lifespan in a Drosophila model of Alzheimer's disease
Cited by: 25
Author(s): Juan Garrido-Maraver, Samantha H. Y. Loh, L. Miguel Martins
Software Mentions: 1
Published: about 7 years ago

10.1155/2015/724715

Detecting Key Genes Regulated by miRNAs in Dysfunctional Crosstalk Pathway of Myasthenia Gravis
Cited by: 11
Author(s): Yuze Cao, Jianjian Wang, Huixue Zhang, Qinghua Tian, Lixia Chen, Shangwei Ning, Peifang Liu, Xiang Sun, Xiaoyu Lu, Chang Eun Song, Shuai Zhang, Bo Xiao, Lihua Wang
Software Mentions: 1
Published: about 11 years ago

10.1155/2017/9614596

Detecting the Candidate Gender Determinants by Bioinformatic Prediction of miRNAs and Their Targets from Transcriptome Sequences of the Male and Female Flowers in Salix suchowensis
Cited by: 1
Author(s): Suyun Wei, Ning Ye, Tongming Yin
Software Mentions: 1
Published: about 9 years ago

10.1155/2021/6529255

Synthetic Evaluation of MicroRNA-1-3p Expression in Head and Neck Squamous Cell Carcinoma Based on Microarray Chips and MicroRNA Sequencing
Cited by: 1
Author(s): Yubing Chen, Mingjiang Liu, Jin Hu, Bo Peng, Luo Dai, Sifan Wang, H. Rosie Xing, Baoju Wang, Zhan He Wu
Software Mentions: 1
Published: over 4 years ago

10.3390/biomedicines9091251

Ladostigil Attenuates Induced Oxidative Stress in Human Neuroblast-like SH-SY5Y Cells
Cited by: 4
Author(s): Keren Zohar, Elyad Lezmi, Tsiona Eliyahu, Michal Linial
Software Mentions: 1
Published: over 4 years ago

10.1186/s13068-019-1446-3

Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana
Cited by: 17
Author(s): Hong-Li Xie, Nancy L. Engle, Sivasankari Venketachalam, Chang Geun Yoo, Jaime Barros, Mitch Lecoultre, Nikki Howard, Guifen Li, Liang Sun, Ashutosh Srivastava, Sivakumar Pattathil, Yunqiao Pu, Michael G. Hahn, Arthur J. Ragauskas, Richard S. Nelson, Richard A. Dixon, Timothy J. Tschaplinski, Elison B. Blancaflor, Yuhong Tang
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13068-019-1489-5

The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16
Cited by: 16
Author(s): Christian Arenas-López, Jessica Locker, Diego Orol, Frederik Walter, Tobias Busche, Jörn Kalinowski, Nigel P. Minton, Kármen Kovács, Klaus Winzer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41416-018-0125-7

Transcriptomic immune profiling of ovarian cancers in paraneoplastic cerebellar degeneration associated with anti-Yo antibodies
Cited by: 12
Author(s): Clément Vialatte de Pémille, Giulia Berzero, Mathilde Small, Dimitri Psimaras, Marine Giry, Maïlys Daniau, Marc Sanson, Jean‐Yves Delattre, Jérôme Honnorat, Virginie Desestret, Agustí Alentorn
Software Mentions: 1
Published: over 7 years ago

10.1186/bcr3154

Functional characterization of the 19q12 amplicon in grade III breast cancers
Cited by: 61
Author(s): Rachael Natrajan, Alan Mackay, Paul M. Wilkerson, Maryou B. Lambros, Daniel Wetterskog, Mónica Arnedos, K-K. Shiu, Felipe C. Geyer, Anita Langerød, Bas Kreike, Fabien Reyal, Hugo M. Horlings, Marc J. van de Vijver, José Palacios, Britta Weigelt, Jorge S. Reis‐Filho
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13058-017-0897-3

SPEN, a new player in primary cilia formation and cell migration in breast cancer
Cited by: 28
Author(s): Stéphanie Légaré, Catherine Chabot, Mark Basik
Software Mentions: 1
Published: over 8 years ago

10.1186/bcr3328

Low levels of Stat5a protein in breast cancer are associated with tumor progression and unfavorable clinical outcomes
Cited by: 64
Author(s): Amy R. Peck, Agnieszka K. Witkiewicz, Chengbao Liu, Alexander C. Klimowicz, Ginger A. Stringer, Edward Pequignot, Boris Freydin, Ning Yang, Adam Ertel, Thai H. Tran, Melanie A. Girondo, Anne Rosenberg, Jeffrey A. Hooke, Albert J. Kovatich, Craig D. Shriver, David L. Rimm, Anthony M. Magliocco, Terry Hyslop, Hallgeir Rui
Software Mentions: 1
Published: over 13 years ago

10.1186/bcr3191

Preclinical and clinical studies of estrogen deprivation support the PDGF/Abl pathway as a novel therapeutic target for overcoming endocrine resistance in breast cancer
Cited by: 39
Author(s): Marion T. Weigel, Zara Ghazoui, Anita K. Dunbier, Sunil Pancholi, Mitch Dowsett, Lesley-Ann Martin
Software Mentions: 1
Published: over 13 years ago

10.1186/bcr3048

Metastatic breast cancer cells inhibit osteoblast differentiation through the Runx2/CBFβ-dependent expression of the Wnt antagonist, sclerostin
Cited by: 89
Author(s): Daniel Mendoza-Villanueva, Leo Zeef, Paul Shore
Software Mentions: 1
Published: over 14 years ago

10.1186/bcr3576

A mammosphere formation RNAi screen reveals that ATG4A promotes a breast cancer stem-like phenotype
Cited by: 106
Author(s): Jonas Michel Wolf, Dyah Laksmi Dewi, Johannes Fredebohm, Karin Müller‐Decker, Christa Flechtenmacher, Jörg D. Hoheisel, Michael Boettcher
Software Mentions: 1
Published: about 12 years ago

10.1186/s13058-014-0441-7

Subtype-specific overexpression of the Rac-GEF P-REX1 in breast cancer is associated with promoter hypomethylation
Cited by: 32
Author(s): Laura Barrio-Real, Lorena Benedetti, Nora Engel, Yaping Tu, Soonweng Cho, Saraswati Sukumar, Marcelo G. Kazanietz
Software Mentions: 1
Published: over 11 years ago

10.1186/bcr2819

Prolactin-induced mouse mammary carcinomas model estrogen resistant luminal breast cancer
Cited by: 54
Author(s): Lisa M. Arendt, Debra E. Rugowski, Tara A Grafwallner-Huseth, Maria J. García-Barchino, Hallgeir Rui, Linda A. Schuler
Software Mentions: 1
Published: about 15 years ago

10.1093/bib/bbv018

Adapting bioinformatics curricula for big data
Cited by: 38
Author(s): Anna C. Greene, Kristine A. Giffin, Casey S. Greene, Jason H. Moore
Software Mentions: 1
Published: almost 11 years ago

10.1093/bib/bbv013

Molecular portraits: the evolution of the concept of transcriptome-based cancer signatures
Cited by: 9
Author(s): A. Modelska, Alessandro Quattrone, Angela Re
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12935-020-01465-8

Clinical value and potential mechanisms of COL8A1 upregulation in breast cancer: a comprehensive analysis
Cited by: 16
Author(s): Peng Wei, Jian‐Di Li, Jingjing Zeng, Xiaoping Zou, Deng Tang, Wei Tang, Minhua Rong, Ying Liu, Wei Dai, Zhong-Qing Tang, Zhaoyong Feng, Gang Chen
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.34

Identification of multiple subclones in peripheral T ‐cell lymphoma, not otherwise specified with genomic aberrations
Cited by: 11
Author(s): Noriaki Yoshida, Akira Umino, Fang Liu, Kotaro Arita, Kennosuke Karube, Shinobu Tsuzuki, Koichi Ohshima, Masao Seto
Software Mentions: 1
Published: over 13 years ago

10.1186/s41199-020-0047-y

Transcriptomics and Epigenomics in head and neck cancer: available repositories and molecular signatures
Cited by: 21
Author(s): Mara Serena Serafini, Laura Lopez-Perez, Giuseppe Fico, Lisa Licitra, Loris De Cecco, Carlo Resteghini
Software Mentions: 1
Published: about 6 years ago

10.1016/S2213-2600(19)30282-6

Concise whole blood transcriptional signatures for incipient tuberculosis: a systematic review and patient-level pooled meta-analysis
Cited by: 112
Author(s): Gupta Rk, Chris Turner, Cristina Venturini, Hanif Esmail, Molebogeng X Rangaka, Andrew Copas, Marc Lipman, Ibrahim Abubakar, Mahdad Noursadeghi
Software Mentions: 1
Published: almost 6 years ago

10.3390/life6040042

Cyanobacteria as Chassis for Industrial Biotechnology: Progress and Prospects
Cited by: 60
Author(s): Lamya Al‐Haj, Yuen Tin Lui, Raeid M. M. Abed, Mohamed Gomaa, Saul Purton
Software Mentions: 1
Published: about 9 years ago

10.26508/lsa.201900494

The CCR4–NOT complex maintains liver homeostasis through mRNA deadenylation
Cited by: 15
Author(s): Akinori Takahashi, Toru Suzuki, Shou Soeda, Shohei Takaoka, Shungo Kobori, Tomokazu Yamaguchi, Haytham Mohamed Aly Mohamed, Akiko Yanagiya, Takaya Abe, Mayo Shigeta, Yasuhide Furuta, Keiji Kuba, Tadashi Yamamoto
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.201900371

Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS
Cited by: 9
Author(s): Shaked Afik, Gabriel Raulet, Nir Yosef
Software Mentions: 1
Published: over 6 years ago

10.3390/md17100576

Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives
Cited by: 21
Author(s): Luca Ambrosino, Michael Tangherlini, Chiara Colantuono, Alfonso Esposito, Mara Sangiovanni, Marco Miralto, Clementina Sansone, Maria Luisa Chiusano
Software Mentions: 1
Published: over 6 years ago

10.1155/2010/784343

Leptin Administration Downregulates the Increased Expression Levels of Genes Related to Oxidative Stress and Inflammation in the Skeletal Muscle ofob/obMice
Cited by: 32
Author(s): Neira Sáinz, Amaia Rodríguez, Victoria Catalán, Sara Becerril, Beatriz Ramírez, Javier Gómez-Ambrosi, Gema Frühbeck
Software Mentions: 1
Published: about 16 years ago

10.1097/MD.0000000000004085

Expression profile of SIX family members correlates with clinic-pathological features and prognosis of breast cancer
Cited by: 32
Author(s): Xu Han, Kong Ju Wu, Yi Jun Tian, Qian Liu, Na Han, Xue Lian He, Xun Yuan, Gen Sheng Wu, Kai Wu
Software Mentions: 1
Published: over 9 years ago

10.3390/metabo2040983

Metabolic Consequences of TGFb Stimulation in CulturedPrimary Mouse Hepatocytes Screened from Transcript Data with ModeScore
Cited by: 3
Author(s): Andreas Hoppe, Iryna Ilkavets, Steven Dooley, Hermann−Georg Holzhütter
Software Mentions: 1
Published: about 13 years ago

10.3390/microarrays3040322

Variation of RNA Quality and Quantity Are Major Sources of Batch Effects in Microarray Expression Data
Cited by: 10
Author(s): Mario Fasold, Hans Binder
Software Mentions: 1
Published: about 11 years ago

10.3390/microarrays4040454

Genomic-Wide Analysis with Microarrays in Human Oncology
Cited by: 10
Author(s): Kenichi Inaoka, Yoshikuni Inokawa, Shuji Nomoto
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-2859-6-4

A perspective on microarrays: current applications, pitfalls, and potential uses
Cited by: 90
Author(s): Pratik Jaluria, Κωνσταντίνος Κωνσταντόπουλος, Michael J. Betenbaugh, Joseph Shiloach
Software Mentions: 1
Published: about 19 years ago

10.1099/mic.0.000423

Identification of new members of the Escherichia coli K-12 MG1655 SlyA regulon
Cited by: 19
Author(s): Thomas D Curran, Fatima Abacha, Stephen P Hibberd, Matthew D. Rolfe, Melissa M. Lacey, Jeffrey Green
Software Mentions: 1
Published: almost 9 years ago

10.1099/mic.0.028282-0

The pneumococcal response to oxidative stress includes a role for Rgg
Cited by: 45
Author(s): Magda E. Bortoni, Vanessa S. Terra, Jason Hinds, Peter W. Andrew, Hasan Yeşilkaya
Software Mentions: 1
Published: about 16 years ago

Projects: bioconductor: ArrayExpress

Science Score: 83/100

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Papers Mentioning ArrayExpress 1,962