bioconductor: ArrayExpress | Projects

10.1186/1476-4598-12-130

miR-125b targets erythropoietin and its receptor and their expression correlates with metastatic potential and ERBB2/HER2 expression
Cited by: 74
Author(s): Manuela Ferracin, Cristian Bassi, Massimo Pedriali, Sara Pagotto, Lucilla D’Abundo, Barbara Zagatti, Fabio Corrà, Gentian Musa, Elisa Callegari, Laura Lupini, Stefano Volpato, Patrizia Querzoli, Massimo Negrini
Software Mentions: 2
Published: over 13 years ago

10.1186/s12943-020-01217-2

LINC00173.v1 promotes angiogenesis and progression of lung squamous cell carcinoma by sponging miR-511-5p to regulate VEGFA expression
Cited by: 85
Author(s): Jia‐Rong Chen, Aibin Liu, Zhihui Wang, Bin Wang, Xingxing Chai, Wenjie Lu, Ting Cao, Ronggang Li, Mingyan Wu, Zhuming Lu, Wei Pang, Lin Xiao, Xiangmeng Chen, Yan Zheng, Qiong Chen, Jincheng Zeng, Jun Li, Xin Zhang, Dong Ren, Yanming Huang
Software Mentions: 2
Published: almost 6 years ago

10.3390/molecules23071763

Genome Identification of B-BOX Gene Family Members in Seven Rosacea Species and Their Expression Analysis in Response to Flower Induction in Malus domestica
Cited by: 31
Author(s): Abdullah Shalmani, Shiliang Fan, Peng Jia, Guofang Li, Izhar Muhammad, Youmei Li, Rahat Sharif, Feng Dong, Xia Zuo, Ké Li, Kun-Ming Chen, Mingyu Han
Software Mentions: 2
Published: over 7 years ago

10.1016/j.molmet.2019.03.012

Dietary calories and lipids synergistically shape adipose tissue cellularity during postnatal growth
Cited by: 14
Author(s): Irina Meln, Gretchen Wolff, Thomas Gajek, Johanna Koddebusch, Sarah Lerch, Liza Harbrecht, Wujun Hong, Irem Bayindir‐Buchhalter, Damir Krunic, Hellmut G. Augustin, Alexandros Vegiopoulos
Software Mentions: 2
Published: almost 7 years ago

10.1111/j.1365-2958.2009.06883.x

Role of the heat shock transcription factor, Hsf1, in a major fungal pathogen that is obligately associated with warm-blooded animals
Cited by: 89
Author(s): Susan M. Nicholls, Michelle Leach, Claire L. Priest, Alistair J. P. Brown
Software Mentions: 2
Published: over 16 years ago

10.1002/1878-0261.12068

Gain-of-function p53 activates multiple signaling pathways to induce oncogenicity in lung cancer cells
Cited by: 13
Author(s): Catherine Vaughan, S. K. Singh, Steven R. Grossman, Brad E. Windle, Sumitra Deb, Sumitra Deb
Software Mentions: 2
Published: almost 9 years ago

10.1002/1878-0261.12107

Prognostic and functional role of subtype-specific tumor-stroma interaction in breast cancer
Cited by: 5
Author(s): Giuseppe Merlino, Patrizia Miodini, Maurizio Callari, Francesca D'Aiuto, Vera Cappelletti, Maria Grazia Daidone
Software Mentions: 2
Published: over 8 years ago

10.15252/msb.20145172

Cell cycle population effects in perturbation studies
Cited by: 103
Author(s): Eoghan O’Duibhir, Philip Lijnzaad, Joris J. Benschop, Tineke L. Lenstra, Dik van Leenen, Marian J. A. Groot Koerkamp, Thanasis Margaritis, Mariël Brok, Patrick Kemmeren, Frank C. P. Holstege
Software Mentions: 2
Published: almost 12 years ago

10.3390/v4101844

miRNA Profiles of Monocyte-Lineage Cells Are Consistent with Complicated Roles in HIV-1 Restriction
Cited by: 31
Author(s): Jeanne M. Sisk, Janice E. Clements, Kenneth W. Witwer
Software Mentions: 2
Published: over 13 years ago

10.12688/wellcomeopenres.13119.2

Using mitoribosomal profiling to investigate human mitochondrial translation
Cited by: 2
Author(s): Fei Gao, Maria Wesołowska, Reuven Agami, Koos Rooijers, Fabricio Loayza‐Puch, Conor Lawless, RN Lightowlers, Z. Chrzanowska-Lightowlers
Software Mentions: 2
Published: about 8 years ago

10.1186/s13071-016-1945-z

Immune and biochemical responses in skin differ between bovine hosts genetically susceptible and resistant to the cattle tick Rhipicephalus microplus
Cited by: 32
Author(s): Alessandra Mara Franzin, Sandra Regina Maruyama, Gustavo García, Rosane Oliveira, José M. C. Ribeiro, Richard P. Bishop, Antônio Augusto Mendes Maia, Daniela D. Moré, Beatriz Rossetti Ferreira, Isabel Kinney Ferreira de Miranda Santos
Software Mentions: 2
Published: about 9 years ago

10.7717/peerj.618

Network based meta-analysis prediction of microenvironmental relays involved in stemness of human embryonic stem cells
Cited by: 2
Author(s): Virginie Mournetas, Quentin Nunes, Patricia Murray, Christopher M. Sanderson, David G. Fernig
Software Mentions: 2
Published: over 11 years ago

10.1016/j.placenta.2010.10.010

Genome-wide expression profile of first trimester villous and extravillous human trophoblast cells
Cited by: 114
Author(s): Richard Apps, Andrew Sharkey, Lucy Gardner, Victoria Male, Matthew Trotter, Nigel Miller, Robyn A. North, Sandra A. Founds, Ashley Moffett
Software Mentions: 2
Published: over 15 years ago

10.1093/pcp/pct178

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants
Cited by: 92
Author(s): Takeshi Obayashi, Yasunobu Okamura, Satoshi Ito, Shu Tadaka, Yosuke Aoki, Matsuyuki Shirota, Kengo Kinoshita
Software Mentions: 2
Published: over 12 years ago

10.1093/pcp/pcu183

Triticeae Resources in Ensembl Plants
Cited by: 57
Author(s): Dan Bolser, Arnaud Kerhornou, Brandon Walts, Paul J. Kersey
Software Mentions: 2
Published: over 11 years ago

10.1007/s00497-015-0261-7

A decade of pollen transcriptomics
Cited by: 113
Author(s): Nicholas Rutley, David Twell
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pbio.0060225

A Morning-Specific Phytohormone Gene Expression Program underlying Rhythmic Plant Growth
Cited by: 200
Author(s): Todd P. Michael, Ghislaı̀n Breton, Samuel P. Hazen, Henry D. Priest, Todd C. Mockler, Steve A. Kay, Joanne Chory
Software Mentions: 2
Published: over 17 years ago

10.1371/journal.pcbi.1005873

A FAIR guide for data providers to maximise sharing of human genomic data
Cited by: 24
Author(s): Manuel Corpas, Nadezda V. Kovalevskaya, Amanda McMurray, Fiona Nielsen
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pcbi.1000779

A Quick Guide to Large-Scale Genomic Data Mining
Cited by: 38
Author(s): Curtis Huttenhower, Oliver Hofmann
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pgen.1007440

Antimicrobial peptides modulate long-term memory
Cited by: 45
Author(s): Raquel Barajas-Azpeleta, Jianping Weng, Jason Gill, Ryan Welte, Chris Seidel, Sean A. McKinney, Stephane Dissel, Kausik Si
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pgen.1005251

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding
Cited by: 34
Author(s): Xin Xie, Michael J. T. Stubbington, Jesper K. Nissen, Kristian G. Andersen, Daniel Hebenstreit, Sarah A. Teichmann, Alexander G. Betz
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pgen.1009297

Dis3L2 regulates cell proliferation and tissue growth through a conserved mechanism
Cited by: 12
Author(s): Benjamin P. Towler, Amy L. Pashler, Hope J. Haime, Katarzyna M. Przybyl, Sandra C. Viegas, Rute G. Matos, Simon Morley, Cecília M. Arraiano, Sarah F. Newbury
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1004288

Genome-Wide Profiling of Yeast DNA:RNA Hybrid Prone Sites with DRIP-Chip
Cited by: 188
Author(s): Yujia Alina Chan, Maria J. Aristizabal, Phoebe Y. T. Lu, Zongli Luo, Akil Hamza, Michæl S. Kobor, Peter C. Stirling, Philip Hieter
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pgen.1000663

Imprinting of the Polycomb Group Gene MEDEA Serves as a Ploidy Sensor in Arabidopsis
Cited by: 137
Author(s): Aleksandra Erilova, Lynette Brownfield, Vivien Exner, Marisa Rosa, David Twell, Ortrun Mittelsten Scheid, Lars Hennig, Claudia Köhler
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pgen.1002505

Coexpression Network Analysis in Abdominal and Gluteal Adipose Tissue Reveals Regulatory Genetic Loci for Metabolic Syndrome and Related Phenotypes
Cited by: 56
Author(s): Josine L. Min, George Nicholson, Ingileif Halgrimsdottir, Kristian Almstrup, Andreas Petri, Amy Barrett, Mary E. Travers, Nigel W. Rayner, Reedik Mägi, Fredrik Pettersson, John Broxholme, Matt J. Neville, Quin F. Wills, Jane Cheeseman, Maxine Allen, Chris Holmes, Tim D. Spector, Jan Fleckner, Mark I. McCarthy, Fredrik Karpe, Cecilia M. Lindgren, Krina T. Zondervan
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pgen.1004684

Systematic Analysis of the Role of RNA-Binding Proteins in the Regulation of RNA Stability
Cited by: 65
Author(s): Ayesha Hasan, Cristina Cotobal, Caia D. S. Duncan, Juan Mata
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1008837

Control of mRNA translation by dynamic ribosome modification
Cited by: 12
Author(s): Lucia Grenga, Richard Little, Govind Chandra, Stuart Daniel Woodcock, Gerhard Saalbach, Richard J. Morris, Jacob G. Malone
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pgen.1004112

Transcriptomics and Functional Genomics of ROS-Induced Cell Death Regulation by RADICAL-INDUCED CELL DEATH1
Cited by: 83
Author(s): Mikael Brosché, Tiina Blomster, Jarkko Salojärvi, Fuqiang Cui, Nina Sipari, Johanna Leppälä, Airi Lamminmäki, Gloria Tomai, Shaman Narayanasamy, Ramesha A. Reddy, Markku Keinänen, Kirk Overmyer, Jaakko Kangasjärvi
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pgen.1000161

Delayed and Accelerated Aging Share Common Longevity Assurance Mechanisms
Cited by: 186
Author(s): Björn Schumacher, Ingrid van der Pluijm, Michael Moorhouse, Theodoros Kosteas, Andria Rasile Robinson, Yousin Suh, Timo M. Breit, Harry van Steeg, Laura J. Niedernhofer, Wilfred F. J. van IJcken, Andrzej Bartke, Stephen R. Spindler, Jan H.J. Hoeijmakers, Gijsbertus T. J. van der Horst, George A. Garinis
Software Mentions: 2
Published: over 17 years ago

10.1371/journal.pgen.1006682

Wnt/Tcf1 pathway restricts embryonic stem cell cycle through activation of the Ink4/Arf locus
Cited by: 37
Author(s): Anchel de Jaime-Soguero, Francesco Aulicino, Gökhan Ertaylan, Anna Griego, Aniello Cerrato, Aravind Tallam, Antonio del Sol, María Pía Cosma, Frederic Lluı́s
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1000605

CHD3 Proteins and Polycomb Group Proteins Antagonistically Determine Cell Identity in Arabidopsis
Cited by: 151
Author(s): Ernst Aichinger, Corina Belle R. Villar, Sara Farrona, José Carlos Castañeda Reyes, Lars Hennig, Claudia Köhler
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pgen.1004903

The Yeast La Related Protein Slf1p Is a Key Activator of Translation during the Oxidative Stress Response
Cited by: 37
Author(s): Christopher J. Kershaw, Joseph L. Costello, Lydia M. Castelli, David Talavera, William Rowe, Paul F. G. Sims, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt, Chris M. Grant
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1000859

Structure, Function, and Evolution of the Thiomonas spp. Genome
Cited by: 119
Author(s): Florence Arsène-Ploetze, Sandrine Koechler, Marie Marchal, Jean‐Yves Coppée, Michaël Chandler, Violaine Bonnefoy, Céline Brochier-Armanet, Mohamed Barakat, Valérie Barbe, Fabienne Battaglia-Brunet, Odile Bruneel, Christopher G. Bryan, Jessica Cleiss-Arnold, Stéphane Cruveiller, Mathieu Erhardt, Audrey Heinrich-Salmeron, Florence Hommais, Catherine Joulian, Evelyne Krin, Aurélie Lieutaud, Didier Lièvremont, Caroline Michel, Daniel Müller, Philippe Ortet, Caroline Proux, Patricia Siguier, David Roche, Zoé Rouy, Grégory Salvignol, Djamila Slyemi, Emmanuel Talla, Stéphanie Weiss, Jean Weissenbach, Claudine Médigue, Philippe Bertin
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pmed.1002352

Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study
Cited by: 73
Author(s): Claudia Cabrera, Joanna Manson, Joanna Shepherd, Hew D.T. Torrance, David S. Watson, M. Paula Longhi, Mimoza Hoti, Minal Patel, Michael J. O’Dwyer, Sussan Nourshargh, Daniel J. Pennington, Michael R. Barnes, Karim Brohi
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pntd.0000543

Anti-schistosomal Intervention Targets Identified by Lifecycle Transcriptomic Analyses
Cited by: 117
Author(s): Jennifer M. Fitzpatrick, Emily Peak, Samïrah Perally, Iain W. Chalmers, John Barrett, Timothy P. Yoshino, Alasdair Ivens, Karl F. Hoffmann
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pntd.0001458

A Semantic Problem Solving Environment for Integrative Parasite Research: Identification of Intervention Targets for Trypanosoma cruzi
Cited by: 5
Author(s): Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir Asiaee, Satya S. Sahoo, Prashant Doshi, Rick L. Tarleton, Amit P. Sheth
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pntd.0004624

Comprehensive Transcriptome Meta-analysis to Characterize Host Immune Responses in Helminth Infections
Cited by: 25
Author(s): Guohui Zhou, Mary M. Stevenson, Timothy G. Geary, Jianguo Xia
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pntd.0005302

Pyrethroid Resistance in Malaysian Populations of Dengue Vector Aedes aegypti Is Mediated by CYP9 Family of Cytochrome P450 Genes
Cited by: 44
Author(s): Intan H. Ishak, Basile Kamgang, Sulaiman S. Ibrahim, Jacob M. Riveron, Helen Irving, Charles S. Wondji
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0127127

RulNet: A Web-Oriented Platform for Regulatory Network Inference, Application to Wheat –Omics Data
Cited by: 7
Author(s): Jonathan Vincent, Pierre Martre, Benjamin Gouriou, Catherine Ravel, Zhanwu Dai, Jean-Marc Petit, Marie Pailloux
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0233818

Intracellular Cryptococcus neoformans disrupts the transcriptome profile of M1- and M2-polarized host macrophages
Cited by: 16
Author(s): Aarthi Subramani, Prianca Griggs, Niah Frantzen, James Mendez, Jamila S Tucker, Jada Murriel, Linda M. Sircy, Grace E. Millican, Erin E. McClelland, Rebecca L. Seipelt-Thiemann, David E. Nelson
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0255679

Development of the petaloid bracts of a paleoherb species, Saururus chinensis
Cited by: 1
Author(s): Yanyan Zhao, Xuemei Zhang, Li D
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0224854

Acute Influenza A virus outbreak in an enzootic infected sow herd: Impact on viral dynamics, genetic and antigenic variability and effect of maternally derived antibodies and vaccination
Cited by: 20
Author(s): Pia Ryt-Hansen, Anders Gorm Pedersen, Inge Larsen, Jesper Schak Krog, Charlotte Sonne Kristensen, Lars Erik Larsen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0235852

Astrocytes influence medulloblastoma phenotypes and CD133 surface expression
Cited by: 8
Author(s): Emily Gronseth, Ankan Gupta, Chris Koceja, Suresh Kumar, Raman G. Kutty, Kevin R. Rarick, Ling Wang, Ramani Ramchandran
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0246263

Nutrient availability is a dominant predictor of soil bacterial and fungal community composition after nitrogen addition in subtropical acidic forests
Cited by: 17
Author(s): Juyan Cui, Xiaochun Yuan, Qiufang Zhang, Junyi Zhou, Kaimiao Lin, Jianguo Xu, Yaozhong Zeng, Yue Wu, Leping Cheng, Quanxin Zeng, Kongcan Mei, Yuehmin Chen
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0232023

Epithelial changes of congenital intestinal obstruction in a rat model
Cited by: 0
Author(s): Quentin Ballouhey, Laurent Fourcade, Laurence Richard, Camille Bellet, Chaharazed El Hamel, Jean Michel Vallat, Franck Sturtz, Sylvie Bourthoumieu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0242770

Comparison of the human microbiome in adults and children with chronic rhinosinusitis
Cited by: 4
Author(s): Il Ho Park, Joong Seob Lee, Joo Hoo Park, Suk Ho Kang, Seong Ahn Hong, Il Seok Park, Joo Heung Yoon
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0049831

Molecular Pathways Involved in Prostate Carcinogenesis: Insights from Public Microarray Datasets
Cited by: 18
Author(s): Sarah C. Baetke, Michiel E. Adriaens, Renaud Seigneuric, Chris T. Evelo, Lars Eijssen
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0231503

Whole genome sequencing characterization of Slovenian carbapenem-resistant Klebsiella pneumoniae, including OXA-48 and NDM-1 producing outbreak isolates
Cited by: 7
Author(s): Katarina Benulič, Mateja Pirš, Natacha Couto, Monika A. Chlebowicz, John W. A. Rossen, Tomaž Mark Zorec, Katja Seme, Mario Poljak, Tatjana Lejko Zupanc, Eva Ružić‐Sabljić, Tjaša Cerar
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0009779

Hepatic Gene Expression Profile in Mice Perorally Infected with Echinococcus multilocularis Eggs
Cited by: 30
Author(s): Bruno Gottstein, Matthias Wittwer, Marc Schild, Michael Merli, Stephen L. Leib, Norbert Müller, Joachim Müller, Rolf Jaggi
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0256884

Seed dressing with mefenpyr-diethyl as a safener for mesosulfuron-methyl application in wheat: The evaluation and mechanisms
Cited by: 8
Author(s): Li‐Bing Yuan, Guiping Ma, Yaling Geng, Xiaomin Liu, Hua Wang, Jian Li, Shanshan Song, Wenliang Pan, Hun Zhi-ying
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0091272

Increasing Consistency of Disease Biomarker Prediction Across Datasets
Cited by: 5
Author(s): Maria Chikina, Stuart C. Sealfon
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0015068

Analysis of Kinase Gene Expression Patterns across 5681 Human Tissue Samples Reveals Functional Genomic Taxonomy of the Kinome
Cited by: 45
Author(s): Sami Kilpinen, K. Ojala, Olli Kallioniemi
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0244227

Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans
Cited by: 11
Author(s): Anders Werner, Paula Mölling, Anna Fagerström, Fredrik Dyrkell, Dimitrios Arnellos, Karin Johansson, Martin Sundqvist, Torbjörn Norén
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0062870

Gene Expression Analysis of Peripheral Blood Cells Reveals Toll-Like Receptor Pathway Deregulation in Colorectal Cancer
Cited by: 10
Author(s): Ye Xu, Qinghua Xu, Yang Li, Fang Liu, Xun Ye, Fei Wu, Shujuan Ni, Cong Tan, Guoxiang Cai, Meng Xia, Sanjun Cai, Xiang Du
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0246844

alms1 mutant zebrafish do not show hair cell phenotypes seen in other cilia mutants
Cited by: 0
Author(s): Lauren Parkinson, Tamara M. Stawicki
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0244755

Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya
Cited by: 8
Author(s): Samuel Mwangangi Muturi, Lucy Muthui, Paul Njogu, Justus M. Onguso, Francis N. Wachira, Stephen O. Opiyo, Roger Pellé
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0236424

Salt stress induces endoplasmic reticulum stress-responsive genes in a grapevine rootstock
Cited by: 22
Author(s): Birsen Aydemir, Canan Yüksel Özmen, Umut Kibar, Filiz Mutaf, Pelin Burcu Büyük, Melike Bakır, Ali Ergül
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0181365

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice
Cited by: 6
Author(s): Olusegun Oshota, Max Conway, María Fookes, Fernanda Schreiber, Roy R. Chaudhuri, Lu Yu, Fiona J. E. Morgan, Simon Clare, Jyoti S. Choudhary, Nicholas R. Thomson, Píetro Lió, Duncan J. Maskell, Pietro Mastroeni, A. Grant
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0044800

Mining Gene Expression Signature for the Detection of Pre-Malignant Melanocytes and Early Melanomas with Risk for Metastasis
Cited by: 21
Author(s): Cláudia Souza, Patrícia Xander, Ana Carolina Monteiro, Amanda Gonçalves dos Santos Silva, Débora Castanheira Pereira da Silva, Sabine Mai, Viviane Bernardo, José Daniel Lopes, Miriam Galvonas Jasiulionis
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0200004

Activation of Nrf2 in the liver is associated with stress resistance mediated by suppression of the growth hormone-regulated STAT5b transcription factor
Cited by: 36
Author(s): John P. Rooney, Keiyu Oshida, Naresh Vasani, Beena Vallanat, Natalia Ryan, Brian N. Chorley, Xuting Wang, Douglas A. Bell, Kai Wu, Lauren M. Aleksunes, Curtis D. Klaassen, Thomas W. Kensler, J. Christopher Corton
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0235551

An iron-dependent metabolic vulnerability underlies VPS34-dependence in RKO cancer cells
Cited by: 7
Author(s): M.J. Kobylarz, Jonathan M. Goodwin, Kang Zhao, John W. Annand, Sarah Hevi, Ellen O’Mahony, Gregory McAllister, John S. Reece‐Hoyes, Qiong Wang, John Alford, Carsten Russ, Alicia Lindeman, Martin Beibel, Guglielmo Roma, Walter Carbone, Judith Knehr, Joseph Loureiro, Christophe Antczak, Dmitri Wiederschain, Leon O. Murphy, Suchithra Menon, Beat Nyfeler
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0036351

Transcriptome Sequencing Revealed Significant Alteration of Cortical Promoter Usage and Splicing in Schizophrenia
Cited by: 96
Author(s): Jing Qin Wu, Xi Wang, Natalie J. Beveridge, Paul A. Tooney, Rodney J. Scott, Vaughan J. Carr, Murray J. Cairns
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0230157

Linking ecology and systematics of acidobacteria: Distinct habitat preferences of the Acidobacteriia and Blastocatellia in tundra soils
Cited by: 57
Author(s): Anastasia A. Ivanova, А. Д. Железова, Т. И. Чернов, Svetlana N. Dedysh
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0042297

Distinct Cardiac Transcriptional Profiles Defining Pregnancy and Exercise
Cited by: 34
Author(s): Eunhee Chung, Joseph Heimiller, Leslie A. Leinwand
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0237541

Caecal microbiota compositions from 7-day-old chicks reared in high-performance and low-performance industrial farms and systematic culturomics to select strains with anti-Campylobacter activity
Cited by: 3
Author(s): Aurore Duquenoy, Maryne Ania, Noémie Boucher, Frédéric Reynier, Lilia Boucinha, C. Andréoni, Vincent Thomas
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0249537

Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence
Cited by: 3
Author(s): Marie Gurke, Amalia Vidal-Gorosquieta, Johanna L. A. Pajimans, Karolina Wȩcek, Axel Barlow, Gloria González-Fortes, Stefanie Hartmann, Aurora Grandal-d’Anglade, Michael Hofreiter
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0245171

Manganese exposure in juvenile C57BL/6 mice increases glial inflammatory responses in the substantia nigra following infection with H1N1 influenza virus
Cited by: 6
Author(s): Collin M. Bantle, C. Tenley French, Jason E. Cummings, Shankar Sadasivan, Kevin Tran, Richard A. Slayden, Richard J. Smeyne, Ronald B. Tjalkens
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0031475

LAL Regulators SCO0877 and SCO7173 as Pleiotropic Modulators of Phosphate Starvation Response and Actinorhodin Biosynthesis in Streptomyces coelicolor
Cited by: 32
Author(s): Susana Guerra, Antonio Rodríguez‐García, Javier Santos‐Aberturas, Cláudia M. Vicente, Tamara D. Payero, Juan F. Martı́n, Jesús F. Aparicio
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0042490

Gene Profile of Chemokines on Hepatic Stellate Cells of Schistosome-Infected Mice and Antifibrotic Roles of CXCL9/10 on Liver Non-Parenchymal Cells
Cited by: 26
Author(s): Yuejin Liang, Jie Luo, Qiao Lu, Ying Zhou, Hai Wei Wu, Dan Zheng, Yong ya Ren, Ke Sun, Yong Wang, Zhao Song Zhang
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0242939

DamID identifies targets of CEH-60/PBX that are associated with neuron development and muscle structure in Caenorhabditis elegans
Cited by: 5
Author(s): Pieter Van de Walle, Celia Muñoz-Jiménez, Peter Askjaer, Liliane Schoofs, Liesbet Temmerman
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0022196

Gene Coexpression Network Analysis as a Source of Functional Annotation for Rice Genes
Cited by: 119
Author(s): Kevin L. Childs, Rebecca M. Davidson, C. Robin Buell
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0232297

Association between the rs1544410 polymorphism in the vitamin D receptor (VDR) gene and insulin secretion after gestational diabetes mellitus
Cited by: 6
Author(s): Nael Shaat, Anastasia Katsarou, Bushra Shahida, Rashmi B. Prasad, Karl Kristensen, Tereza Planck
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0236460

Gut microbiota profiles of treatment-naïve adult acute myeloid leukemia patients with neutropenic fever during intensive chemotherapy
Cited by: 12
Author(s): Thanawat Rattanathammethee, Pimchanok Tuitemwong, Parameth Thiennimitr, Phinitphong Sarichai, Sarisa Na Pombejra, Pokpong Piriyakhuntorn, Sasinee Hantrakool, Chatree Chai‐Adisaksopha, Ekarat Rattarittamrong, Adisak Tantiworawit, Lalita Norasetthada
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0110840

Measuring the Effect of Inter-Study Variability on Estimating Prediction Error
Cited by: 19
Author(s): Shuyi Ma, Jaeyun Sung, Andrew T. Magis, Yuliang Wang, Donald Geman, Nathan D. Price
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0072591

Comparative Gene Expression Profiling Identifies Common Molecular Signatures of NF-κB Activation in Canine and Human Diffuse Large B Cell Lymphoma (DLBCL)
Cited by: 74
Author(s): Manikhandan Mudaliar, Ross Haggart, Gino Miele, Grant C. Sellar, Karen A. L. Tan, John Goodlad, Elspeth Milne, David M. Vail, Ilene D. Kurzman, Daniel Crowther, David Argyle
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0083762

The Effect of Gestational Age on Angiogenic Gene Expression in the Rat Placenta
Cited by: 13
Author(s): Kanchan Vaswani, Melissa Hum, Hsiu‐Wen Chan, Jennifer Ryan, Ryan J Wood-Bradley, Marloes Dekker Nitert, Murray D. Mitchell, James A. Armitage, Gregory E. Rice
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0009114

Functional Overlap between eIF4G Isoforms in Saccharomyces cerevisiae
Cited by: 51
Author(s): Bryan K. Clarkson, Wendy V. Gilbert, Jennifer A. Doudna
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0238923

Maternal supplementation with Bifidobacterium breve M-16V prevents their offspring from allergic airway inflammation accelerated by the prenatal exposure to an air pollutant aerosol
Cited by: 16
Author(s): Chiyoko Terada-Ikeda, Masahiro Kitabatake, Akari Hiraku, Koichi Kato, Satsuki Yasui, Natsuko Imakita, Noriko Ouji-Sageshima, Noriyuki Iwabuchi, Kaoru Hamada, Toshihiro Ito
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0242297

Whole genome genetic variation and linkage disequilibrium in a diverse collection of Listeria monocytogenes isolates
Cited by: 0
Author(s): Swarnali Louha, Richard J. Meinersmann, Travis C. Glenn
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0243065

Differential plasma exosomal long non-coding RNAs expression profiles and their emerging role in E-cigarette users, cigarette, waterpipe, and dual smokers
Cited by: 16
Author(s): Gagandeep Kaur, K. R. P. Singh, Krishna Prahlad Maremanda, Dongmei Li, Hitendra S. Chand, Irfan Rahman
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0232972

Polysaccharides isolated from Cordyceps Sinensis contribute to the progression of NASH by modifying the gut microbiota in mice fed a high-fat diet
Cited by: 17
Author(s): Lei Chen, Liangyu Zhang, Wendong Wang, Wei Qiu, Lei Liu, Anhong Ning, Jing Cao, Min Huang, Ming-Chao Zhong
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0244056

Viruses in unexplained encephalitis cases in American black bears (Ursus americanus)
Cited by: 10
Author(s): Charles E. Alex, Elizabeth Fahsbender, Eda Altan, Robert J. Bildfell, Peregrine L. Wolff, Ling Jin, Wendy Black, K. A. Jackson, Leslie W. Woods, Brandon Munk, Tiffany Tse, Eric Delwart, Patricia A. Pesavento
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0237245

Increasing temperature can modify the effect of straw mulching on soil C fractions, soil respiration, and microbial community composition
Cited by: 10
Author(s): Xin Fu, Jun Wang, Meng-Yi Xie, Fazhu Zhao, Russell Doughty
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0121042

Host Glycan Sugar-Specific Pathways in Streptococcus pneumonia: Galactose as a Key Sugar in Colonisation and Infection
Cited by: 67
Author(s): Laura Paixão, J.Santos Oliveira, André Veríssimo, Susana Vinga, Eva C. Lourenço, M. Rita Ventura, Morten Kjos, Jan‐Willem Veening, Vitor E. Fernandes, Peter W. Andrew, Hasan Yeşilkaya, Ana Rute Neves
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0237463

Bio-activating ultrafine grain titanium: RNA sequencing reveals enhanced mechano-activation of osteoconduction on nanostructured substrates
Cited by: 4
Author(s): Rebecca A. Reiss, Terry C. Lowe, Johnny A. Sena, Oleg Makhnin, Melanie C. Connick, Patrick Erik Illescas, Casey F. Davis
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0148957

Low Concordance between Gene Expression Signatures in ER Positive HER2 Negative Breast Carcinoma Could Impair Their Clinical Application
Cited by: 9
Author(s): Enora Laas, Peter Mallon, François P. Duhoux, Amina Hamidouche, Roman Rouzier, Fabien Reyal
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0240025

PLA2R antibody, PLA2R rs4664308 polymorphism and PLA2R mRNA levels in Tunisian patients with primary membranous nephritis
Cited by: 2
Author(s): Tarak Dhaouadi, Jihen Abdellatif, R. Trabelsi, H. Gaied, Sameh Chamkhi, Imen Sfar, R. Goucha, Fethi Ben Hamida, T. Ben Abdallah, Yousr Gorgi
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0058992

Spatio-Temporal Expression Patterns of Arabidopsis thaliana and Medicago truncatula Defensin-Like Genes
Cited by: 55
Author(s): Mesfin Tesfaye, Kevin A.T. Silverstein, Sumitha Nallu, Lin Wang, Christopher Botanga, S. Karen Gomez, Liliana M. Costa, Maria J. Harrison, Deborah A. Samac, Jane Glazebrook, Fumiaki Katagiri, José Gutierrez-Marcos, Kathryn A. VandenBosch
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0249757

Genome-wide identification and expression analysis of late embryogenesis abundant protein-encoding genes in rye (Secale cereale L.)
Cited by: 7
Author(s): Mengyue Ding, Lijian Wang, Weimin Zhan, Guanghua Sun, Xiaolin Jia, Shizhan Chen, Wusi Ding, Jianping Yang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0253866

Have maternal or paternal ages any impact on the prenatal incidence of genomic copy number variants associated with fetal structural anomalies?
Cited by: 4
Author(s): Marta Larroya, Marta Tortajada, Eduard Mensión, Montse Pauta, Laia Rodríguez‐Revenga, Antoni Borrell
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0004818

PTCH1+/− Dermal Fibroblasts Isolated from Healthy Skin of Gorlin Syndrome Patients Exhibit Features of Carcinoma Associated Fibroblasts
Cited by: 27
Author(s): Alexandre Valin, Stéphanie Barnay‐Verdier, Robert Thomas, Hugues Ripoche, Florence Brellier, Odile Chevallier-Lagente, Marie-Françoise Avril, Thierry Magnaldo
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0229415

Identification of two novel adenoviruses in smooth-billed ani and tropical screech owl
Cited by: 10
Author(s): Ana Paula Jejesky de Oliveira, Maria Cristina Valdetaro Rangel, Márton Z. Vidovszky, João Luiz Rossi, Fernando Vicentini, Balázs Harrach, Győző L. Kaján
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0166991

dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees
Cited by: 2
Author(s): Michael J. Wise
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0019651

Platelets Alter Gene Expression Profile in Human Brain Endothelial Cells in an In Vitro Model of Cerebral Malaria
Cited by: 35
Author(s): Mathieu Barbier, Dorothée Faille, Béatrice Loriod, Julien Textoris, Claire Camus, Denis Puthier, Laurence Flori, Samuel C. Wassmer, Geneviève Victoréro, Marie‐Christine Alessi, Thierry Fusaı̈, Catherine Nguyen, Georges E. Grau, Pascal Rihet
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0052836

An Integrative Approach to Inferring Gene Regulatory Module Networks
Cited by: 5
Author(s): Michael Baitaluk, Sergey Kozhenkov, Julia Ponomarenko
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0244455

Genome-wide association analysis of Russian wheat aphid (Diuraphis noxia) resistance in Dn4 derived wheat lines evaluated in South Africa
Cited by: 5
Author(s): Lavinia Kisten, V. Tolmay, Isack Mathew, Scott L. Sydenham, Eduard Venter
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0241914

Genome-wide profiling of alternative splicing genes in hybrid poplar (P.alba×P.glandulosa cv.84K) leaves
Cited by: 4
Author(s): Ruixue Wang, Peng Yin, Ruixia Yang, Xiao Liu, Lijie Luo, Junfeng Xu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0130028

Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex
Cited by: 43
Author(s): Evelina Sjöstedt, Linn Fagerberg, Björn M. Hallström, Anna Häggmark, Nicholas Mitsios, Peter Nilsson, Fredrik Pontén, Tomas Hökfelt, Mathias Uhlén, Jan Mulder
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0037209

Transcriptomic Characterization of Temperature Stress Responses in Larval Zebrafish
Cited by: 149
Author(s): Yong Long, Linchun Li, Qing Li, Xiaozhen He
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0159934

Nutritional Evaluation of an EPA-DHA Oil from Transgenic Camelina sativa in Feeds for Post-Smolt Atlantic Salmon (Salmo salar L.)
Cited by: 63
Author(s): Mónica B. Betancor, Matthew Sprague, Olga Sayanova, Sarah Usher, Christoforos Metochis, Patrick Campbell, Johnathan A. Napier, Douglas R. Tocher
Software Mentions: 2
Published: over 9 years ago

Projects: bioconductor: ArrayExpress

Science Score: 83/100

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Papers Mentioning ArrayExpress 1,962