bioconductor: ALDEx2 | Projects | Ecosyste.ms: Papers

10.3390/foods10092040

Impact of Plant-Based Meat Alternatives on the Gut Microbiota of Consumers: A Real-World Study
Cited by: 36
Author(s): Miguel Toribio-Mateas, Adri Bester, Natalia Klimenko
Software Mentions: 3
Published: about 3 years ago

10.7717/peerj.12229

Large-scale differences in diversity and functional adaptations of prokaryotic communities from conserved and anthropogenically impacted mangrove sediments in a tropical estuary
Cited by: 5
Author(s): Carolina Oliveira de Santana, Pieter Spealman, Vânia Maria Maciel Melo, David Gresham, Taise de Jesus, Eddy José Francisco de Oliveira, Fábio Alexandre Chinalia
Software Mentions: 3
Published: about 3 years ago

10.1016/j.xcrm.2021.100398

Identification of Faecalibacterium prausnitzii strains for gut microbiome-based intervention in Alzheimer’s-type dementia
Cited by: 35
Author(s): Atsushi Ueda, Shoji Shinkai, Hirotsugu Shiroma, Yu Taniguchi, Sayaka Tsuchida, Takahiro Kariya, Tomohiro Kawahara, Yodai Kobayashi, Noriyuki Kohda, Kazunari Ushida, Akihiko Kitamura, Takuji Yamada
Software Mentions: 3
Published: about 3 years ago

10.1016/j.ebiom.2020.102968

Prebiotic administration modulates gut microbiota and faecal short-chain fatty acid concentrations but does not prevent chronic intermittent hypoxia-induced apnoea and hypertension in adult rats
Cited by: 15
Author(s): Karen O’Connor, Eric F. Lucking, Thomaz F.S. Bastiaanssen, Veronica L. Peterson, Fiona Crispie, Paul D. Cotter, Gerard Clarke, John F. Cryan, Ken D. O’Halloran
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8101518

Physiological Stress Mediated by Corticosterone Administration Alters Intestinal Bacterial Communities and Increases the Relative Abundance of Clostridium perfringens in the Small Intestine of Chickens
Cited by: 11
Author(s): Sarah J. M. Zaytsoff, Richard R. E. Uwiera, G. Douglas Inglis
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8111829

Behind Taxonomic Variability: The Functional Redundancy in the Tick Microbiome
Cited by: 24
Author(s): Agustı́n Estrada-Peña, Alejandro Cabezas‐Cruz, Dasiel Obregón
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms8040492

Impact of a Multistrain Probiotic Formulation with High Bifidobacterial Content on the Fecal Bacterial Community and Short-Chain Fatty Acid Levels of Healthy Adults
Cited by: 5
Author(s): Giorgio Gargari, Valentina Taverniti, Ranjan Koirala, Claudio Gardana, Simone Guglielmetti
Software Mentions: 2
Published: over 4 years ago

10.1186/s13099-021-00403-x

Gut microbiota of patients with different subtypes of gastric cancer and gastrointestinal stromal tumors
Cited by: 20
Author(s): Virinder Sarhadi, Binu Mathew, Arto Kokkola, Tiina Karla, Milja Tikkanen, Hilpi Rautelin, Leo Lahti, Pauli Puolakkainen, Sakari Knuutila
Software Mentions: 2
Published: almost 4 years ago

10.3390/jcm9030687

Changes in the Intestinal Microbiota Are Seen Following Treatment with Infliximab in Children with Crohn’s Disease
Cited by: 16
Author(s): Kinga Kowalska-Duplaga, Przemysław Kapusta, Tomasz Gosiewski, Agnieszka Sroka-Oleksiak, Agnieszka H. Ludwig-Słomczyńska, Paweł Wołkow, Krzysztof Fyderek
Software Mentions: 2
Published: over 4 years ago

10.1093/jxb/erz572

Unique bacterial assembly, composition, and interactions in a parasitic plant and its host
Cited by: 16
Author(s): Connor R. Fitzpatrick, Adam C. Schneider
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12859-019-3174-x

omicplotR: visualizing omic datasets as compositions
Cited by: 0
Author(s): Daniel J. Giguere, Jean M. Macklaim, Brandon Y. Lieng, Gregory B. Gloor
Software Mentions: 2
Published: about 5 years ago

10.1186/s40168-015-0145-y

Human milk microbiota profiles in relation to birthing method, gestation and infant gender
Cited by: 218
Author(s): Camilla Urbaniak, Michelle Angelini, Gregory B. Gloor, Gregor Reid
Software Mentions: 2
Published: almost 9 years ago

10.1186/s40168-018-0502-8

Increased richness and diversity of the vaginal microbiota and spontaneous preterm birth
Cited by: 131
Author(s): Aline C. Freitas, Alan D. Bocking, Janet E. Hill, Deborah Money
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-69188-4

Sierra Nevada sweep: metagenomic measurements of bioaerosols vertically distributed across the troposphere
Cited by: 12
Author(s): Crystal Jaing, James B. Thissen, Michael D. Morrison, Michael Dillon, Samantha M. Waters, Garrett T. Graham, Nicholas A. Be, Patrick Nicoll, Sonali Verma, Tristan Caro, David J. Smith
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-018-0531-3

Influence of cigarette smoking on the human duodenal mucosa-associated microbiota
Cited by: 60
Author(s): Erin R. Shanahan, Ayesha Shah, Natasha A. Koloski, Marjorie M. Walker, Nicholas J. Talley, Mark Morrison, Gerald Holtmann
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-70244-2

Obesity and ethnicity alter gene expression in skin
Cited by: 5
Author(s): Joseph R. Walker, Sandra Garcet, José O. Alemán, Christopher E. Mason, David Danko, Simone Zuffa, Jonathan R. Swann, James G. Krueger, Jan L. Breslow, Peter R. Holt
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-89822-z

Longitudinal profiling of the burn patient cutaneous and gastrointestinal microbiota: a pilot study
Cited by: 6
Author(s): Kelly M. Lima, Ryan R. Davis, Stephenie Y. Liu, David G. Greenhalgh, Nam K. Tran
Software Mentions: 2
Published: over 3 years ago

10.1002/mbo3.462

Response of the rhizosphere prokaryotic community of barley (<i>Hordeum vulgare</i> L.) to elevated atmospheric CO<sub>2</sub> concentration in open-top chambers
Cited by: 2
Author(s): Márton Szoboszlay, Astrid Näther, Esther Mitterbauer, Jürgen Bender, Hans‐Joachim Weigel, Christoph C. Tebbe
Software Mentions: 2
Published: over 7 years ago

10.3390/md18050278

Puffer Fish Gut Microbiota Studies Revealed Unique Bacterial Co-Occurrence Patterns and New Insights on Tetrodotoxin Producers
Cited by: 10
Author(s): Zhenchi Li, Jinglin Tian, Yuekun Lai, Chiu-Hong Lee, Zongwei Cai, Chun-Fai Yu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0228560

Duckweed hosts a taxonomically similar bacterial assemblage as the terrestrial leaf microbiome
Cited by: 40
Author(s): Kenneth Acosta, Jenny Xu, Sarah Gilbert, Elizabeth R Denison, Thomas Brinkman, Sarah L. Lebeis, Eric Lam
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.03054

Temporal Bacterial Surveillance of Salmon Aquaculture Sites Indicates a Long Lasting Benthic Impact With Minimal Recovery
Cited by: 35
Author(s): Joost T. P. Verhoeven, Flora Salvo, Robyn Knight, Dounia Hamoutene, Suzanne C. Dufour
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSphere.00327-17

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young
Cited by: 130
Author(s): Gaorui Bian, Gregory B. Gloor, Aihua Gong, Changsheng Jia, Wei Zhang, Jun Hu, Hong Zhang, Yumei Zhang, Zhiyong Zhou, Jiangao Zhang, Jeremy P. Burton, Gregor Reid, Yongliang Xiao, Qiang Zeng, Kaiping Yang, Jiangang Li
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-76570-9

Opioid agonist and antagonist use and the gut microbiota: associations among people in addiction treatment
Cited by: 31
Author(s): Rachel E. Gicquelais, Amy S. B. Bohnert, Laura Thomas, Betsy Foxman
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-01259-8

Lactobacillus spp. attenuate antibiotic-induced immune and microbiota dysregulation in honey bees
Cited by: 39
Author(s): Brendan A. Daisley, Andrew P. Pitek, John A. Chmiel, Shaeley Gibbons, Anna M. Chernyshova, Kait F. Al, Kyrillos M. Faragalla, Jeremy P. Burton, Graham Thompson, Gregor Reid
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-019-38901-3

Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity
Cited by: 21
Author(s): Abrey J. Yeo, Anna Henningham, Emmanuelle Fantino, Sally Galbraith, Lutz Krause, Claire Wainwright, Peter D. Sly, Martin F. Lavin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-23296-4

Methodology challenges in studying human gut microbiota – effects of collection, storage, DNA extraction and next generation sequencing technologies
Cited by: 116
Author(s): Michał Panek, Hana Čipčić Paljetak, Anja Barešić, Mihaela Perić, Mario Matijašić, Ivana Lojkić, Darija Vranešić Bender, Željko Krznarić, Donatella Verbanac
Software Mentions: 1
Published: over 6 years ago

10.3390/nu12020368

Effect of Oral Probiotic Lactobacillus rhamnosus GR-1 and Lactobacillus reuteri RC-14 on the Vaginal Microbiota, Cytokines and Chemokines in Pregnant Women
Cited by: 36
Author(s): Siwen Yang, Gregor Reid, John Challis, Gregory B. Gloor, Elizabeth Asztalos, Deborah Money, Shannon Seney, Alan D. Bocking
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu12010234

Trimethylamine-N-Oxide Postprandial Response in Plasma and Urine Is Lower After Fermented Compared to Non-Fermented Dairy Consumption in Healthy Adults
Cited by: 23
Author(s): Kathryn Burton, Ralf Krüger, Valentin Scherz, Linda H. Münger, Gianfranco Picone, Nathalie Vionnet, Claire Bertelli, Gilbert Greub, Francesco Capozzi, Guy Vergères
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.2095

The oral microbiome of patients with axial spondyloarthritis compared to healthy individuals
Cited by: 18
Author(s): Jordan E. Bisanz, Praema Suppiah, W. Murray Thomson, Trudy Milne, Nigel Yeoh, Anita Nolan, Grace Ettinger, Gregor Reid, Gregory B. Gloor, Jeremy P. Burton, M. P. Cullinan, Simon Stebbings
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.00398

The Microbiomes of Seven Lichen Genera Reveal Host Specificity, a Reduced Core Community and Potential as Source of Antimicrobials
Cited by: 31
Author(s): Maria A. Sierra, David Danko, Tito A. Sandoval, Gleb Pishchany, Bibiana Moncada, Roberto Kolter, Christopher E. Mason, María Mercedes Zambrano
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00498-20

Oxalate-Degrading Bacillus subtilis Mitigates Urolithiasis in a Drosophila melanogaster Model
Cited by: 12
Author(s): Kait F. Al, Brendan A. Daisley, Ryan M. Chanyi, Jennifer Bjazevic, Hassan Razvi, Gregor Reid, Jeremy P. Burton
Software Mentions: 1
Published: about 4 years ago

10.3390/nu12061848

Codium fragile Ameliorates High-Fat Diet-Induced Metabolism by Modulating the Gut Microbiota in Mice
Cited by: 26
Author(s): Jungman Kim, Jae Ho Choi, Tae-Kwang Oh, Byung-Jae Ahn, Tatsuya Unno
Software Mentions: 1
Published: over 4 years ago

10.1186/s12903-021-01606-z

Streptococcus salivarius inhibits immune activation by periodontal disease pathogens
Cited by: 19
Author(s): Kyle W. MacDonald, Ryan M. Chanyi, Jean M. Macklaim, Peter A. Cadieux, Gregor Reid, Jeremy P. Burton
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.608478

Characterization of Spacesuit Associated Microbial Communities and Their Implications for NASA Missions
Cited by: 4
Author(s): David Danko, Ganesh Babu Malli Mohan, Maria A. Sierra, Michelle A. Rucker, Nitin Kumar Singh, A. B. Regberg, M. S. Bell, Niamh B. O’Hara, Rachid Ounit, Christopher E. Mason, Kasthuri Venkateswaran
Software Mentions: 1
Published: over 3 years ago

10.3390/antiox9100911

Dendropanax morbifera Leaf Extracts Improved Alcohol Liver Injury in Association with Changes in the Gut Microbiota of Rats
Cited by: 11
Author(s): Tae-Kil Eom, Gwangpyo Ko, Kyeoung Cheol Kim, Ju-Sung Kim, Tatsuya Unno
Software Mentions: 1
Published: about 4 years ago

10.1186/s42523-021-00126-z

Antibiotics and fecal transfaunation differentially affect microbiota recovery, associations, and antibiotic resistance in lemur guts
Cited by: 10
Author(s): Sally L Bornbusch, Rachel L. Harris, Nicholas M. Grebe, Kimberly Roche, Kristin Dimac-Stohl, Christine M. Drea
Software Mentions: 1
Published: about 3 years ago

Ecosyste.ms: Papers

Projects: bioconductor: ALDEx2

Papers Mentioning ALDEx2 136