Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: ABSSeq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/ABSSeq
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
1 version
Latest release: about 1 year ago
20,402 downloads total
Papers Mentioning ABSSeq 7
10.1186/s12864-020-06856-9
mitch: multi-contrast pathway enrichment for multi-omics and single-cell profiling dataCited by: 28
Author(s): Antony Kaspi, Mark Ziemann
Software Mentions: 15
Published: over 4 years ago
10.3389/fmicb.2019.01793
The Inducible Response of the Nematode Caenorhabditis elegans to Members of Its Natural Microbiota Across Development and Adult LifeCited by: 22
Author(s): Wentao Yang, Carola Petersen, Barbara Pees, Johannes Zimmermann, Silvio Waschina, Philipp Dirksen, Philip Rosenstiel, Andreas Tholey, Matthias Leippe, Katja Dierking, Christoph Kaleta, Hinrich Schulenburg
Software Mentions: 9
Published: about 5 years ago
10.1186/s12864-016-2848-2
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differencesCited by: 21
Author(s): Wentao Yang, Philip Rosenstiel, Hinrich Schulenburg
Software Mentions: 8
Published: over 8 years ago
10.1186/s12864-019-5686-1
aFold – using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing dataCited by: 4
Author(s): Wentao Yang, Philip Rosenstiel, Hinrich Schulenburg
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.ppat.1009454
Effector and regulator: Diverse functions of C. elegans C-type lectin-like domain proteinsCited by: 17
Author(s): Barbara Pees, Wentao Yang, Anke Kloock, Carola Petersen, Lena Peters, Liancheng Fan, Meike Friedrichsen, Sabrina Butze, Alejandra Zárate-Potes, Hinrich Schulenburg, Katja Dierking
Software Mentions: 6
Published: over 3 years ago
10.3390/ijms221810006
Increased Autotaxin Levels in Severe COVID-19, Correlating with IL-6 Levels, Endothelial Dysfunction Biomarkers, and Impaired Functions of Dendritic CellsCited by: 14
Author(s): Ioanna Nikitopoulou, Dionysiοs Fanidis, Konstantinos Ntatsoulis, Panagiotis Moulos, George Mpekoulis, Maria Evangelidou, Alice G. Vassiliou, Vasiliki Dimakopoulou, Edison Jahaj, Stamatios Tsipilis, Stylianos E. Orfanos, Ioanna Dimopoulou, Emmanouil Angelakis, Karolina Akinosoglou, Niki Vassilaki, Argyrios Tzouvelekis, Αναστασία Κοτανίδου, Vassilis Aidinis
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.ppat.1008826
The C. elegans GATA transcription factor elt-2 mediates distinct transcriptional responses and opposite infection outcomes towards different Bacillus thuringiensis strainsCited by: 19
Author(s): Alejandra Zárate-Potes, Wentao Yang, Barbara Pees, Rebecca Schalkowski, Philipp Segler, Bentje Andresen, Daniela Haase, Rania Nakad, Philip Rosenstiel, Guillaume Tetreau, Jacques‐Philippe Colletier, Hinrich Schulenburg, Katja Dierking
Software Mentions: 3
Published: about 4 years ago