Ecosyste.ms: Papers

10.1371/journal.pone.0184399

PreImplantation Factor in endometriosis: A potential role in inducing immune privilege for ectopic endometrium
Cited by: 8
Author(s): Marco Sbracia, Brett McKinnon, F. Scarpellini, Daniela Marconi, Gabriele Rossi, Cedric Simmilion, Michael D. Mueller, Eytan R. Barnea, Martin Mueller
Software Mentions: 1
Published: about 7 years ago

10.3897/phytokeys.75.10328

Systematics of Simplicia Kirk (Poaceae, Agrostidinae) – an endemic, threatened New Zealand grass genus
Cited by: 4
Author(s): P. J. de Lange, Rob D. Smissen, Jeremy R. Rolfe, C. C. Ogle
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1002164

Complex Evolutionary Events at a Tandem Cluster of Arabidopsis thaliana Genes Resulting in a Single-Locus Genetic Incompatibility
Cited by: 60
Author(s): Lisa M. Smith, Kirsten Bomblies, Detlef Weigel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1008511

Patient genetics is linked to chronic wound microbiome composition and healing
Cited by: 23
Author(s): Craig D. Tipton, Randall D. Wolcott, Nicholas E. Sanford, Clint L. Miller, Gita A Pathak, Talisa Silzer, Jie Sun, Derek Fleming, Kendra P. Rumbaugh, Todd D. Little, Nicole Phillips, C. Douglas Phillips
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0004885

Population Genetic Analysis Reveals a High Genetic Diversity in the Brazilian Cryptococcus gattii VGII Population and Shifts the Global Origin from the Amazon Rainforest to the Semi-arid Desert in the Northeast of Brazil
Cited by: 46
Author(s): Ana Carolina Souto, Lucas Xavier Bonfietti, Kennio Ferreira‐Paim, Luciana Trilles, Marilena dos Anjos Martins, Marcelo Ribeiro-Alves, Cau D. Pham, Liline Maria Soares Martins, Wallace dos Santos, Marilene Rodrigues Chang, Fábio Brito-Santos, Dayane Cristina Silva Santos, Silvana Túlio Fortes, Shawn R. Lockhart, Bodo Wanke, M. S. C. Melhem, Márcia Lazéra, Wieland Meyer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0001888

New Insights on Taxonomy, Phylogeny and Population Genetics of Leishmania (Viannia) Parasites Based on Multilocus Sequence Analysis
Cited by: 77
Author(s): Mariana Côrtes Boité, Isabel Maurício, Michael A. Miles, Elisa Cupolillo
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0128019

Branchfall as a Demographic Filter for Epiphyte Communities: Lessons from Forest Floor-Based Sampling
Cited by: 33
Author(s): Juliano Sarmento Cabral, Gunnar Petter, Glenda Mendieta‐Leiva, Katrin Wagner, Gerhard Zotz, Holger Kreft
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0035699

Whole Genome Sequencing to Investigate the Emergence of Clonal Complex 23 Neisseria meningitidis Serogroup Y Disease in the United States
Cited by: 28
Author(s): Mary G. Krauland, Julie C. Dunning Hotopp, David R. Riley, Sean C. Daugherty, Jane W. Marsh, Nancy E. Messonnier, Leonard W. Mayer, Hervé Tettelin, Lee H. Harrison
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0059614

A Molecular Phylogeny of Plesiorycteropus Reassigns the Extinct Mammalian Order ‘Bibymalagasia’
Cited by: 64
Author(s): Michael Buckley
Software Mentions: 1
Published: over 11 years ago

10.7717/peerj.9856

If you build it, they will come: rapid colonization by dragonflies in a new effluent-dependent river reach
Cited by: 10
Author(s): Michael T. Bogan, Drew E. Eppehimer, Hamdhani Hamdhani, Kelsey D. Hollien
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0108267

tBRD-1 Selectively Controls Gene Activity in the Drosophila Testis and Interacts with Two New Members of the Bromodomain and Extra-Terminal (BET) Family
Cited by: 14
Author(s): Ina Theofel, Marek Bartkuhn, Tim Hundertmark, Thomas Boettger, Stefanie Gärtner, Katja Leser, Stephan Awe, Michael Schipper, Renate Renkawitz‐Pohl, Christina Rathke
Software Mentions: 1
Published: about 10 years ago

10.7717/peerj.9619

Density and diversity of macroinvertebrates in Colombian Andean streams impacted by mining, agriculture and cattle production
Cited by: 8
Author(s): Ana María Meza-Salazar, Giovany Guevara, Lucimar Gomes-Días, Carlos A. Cultid‐Medina
Software Mentions: 1
Published: about 4 years ago

10.3897/zookeys.733.20159

Fishes of the Cusiana River (Meta River basin, Colombia), with an identification key to its species
Cited by: 3
Author(s): Alexander Urbano‐Bonilla, Gustavo A. Ballen, Guido A. Herrera‐R, Jhon Zamudio, Edgar Esteban Herrera-Collazos, Carlos DoNascimiento, Saúl Prada‐Pedreros, Javier A. Maldonado-Ocampo
Software Mentions: 1
Published: almost 7 years ago

10.1155/2021/6618874

Maternal Probiotic or Synbiotic Supplementation Modulates Jejunal and Colonic Antioxidant Capacity, Mitochondrial Function, and Microbial Abundance in Bama Mini-piglets
Cited by: 10
Author(s): Kai Wang, Xiangfeng Kong, Md. Abul Kalam Azad, Qian Zhu, Xiong Li, Yuzhong Zheng, Zhangli Hu, Yulong Yin, Q. He
Software Mentions: 1
Published: over 3 years ago

10.1590/0074-02760190170

Diversity, natural infection and blood meal sources of phlebotomine sandflies (Diptera, Psychodidae) in the western Brazilian Amazon
Cited by: 25
Author(s): Antônio Marques Pereira Júnior, Ana Beatriz Nascimento Souza, Thaís Santos Castro, Michelli Santos da Silva, Paula Frassinetti Medeiros de Paulo, Gabriel Eduardo Melim Ferreira, Jansen Fernandes Medeiros
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0128559

Munroa argentina, a Grass of the South American Transition Zone, Survived the Andean Uplift, Aridification and Glaciations of the Quaternary
Cited by: 8
Author(s): Leonardo Amarilla, Ana M. Antón, Jorge Oscar Chiapella, María Marcela Manifesto, Diego F. Angulo, Victoria Sosa
Software Mentions: 1
Published: over 9 years ago

10.3354/meps11078

Size matters at deep-sea hydrothermal vents: different diversity and habitat fidelity patterns of meio- and macrofauna
Cited by: 34
Author(s): Sabine Gollner, Breea Govenar, Charles R. Fisher, Monika Bright
Software Mentions: 1
Published: almost 10 years ago

10.1002/ece3.5456

Applying the resource dispersion hypothesis to a fission–fusion society: A case study of the African lion (<i>Panthera leo</i>)
Cited by: 9
Author(s): Moreangels M. Mbizah, Marion Valeix, David W. Macdonald, Andrew J. Loveridge
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0103959

Effect of Incubation on Bacterial Communities of Eggshells in a Temperate Bird, the Eurasian Magpie (Pica pica)
Cited by: 42
Author(s): Won Young Lee, Min‐Cheol Kim, Piotr G. Jabłoński, Jae Chun Choe, Sang‐im Lee
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0198727

New insights into the genetic diversity of Leishmania RNA Virus 1 and its species-specific relationship with Leishmania parasites
Cited by: 19
Author(s): Lilian Motta Cantanhêde, Flávia Gonçalves Fernandes, Gabriel Eduardo Melim Ferreira, Renato Porrozzi, Ricardo de Godoi Mattos Ferreira, Elisa Cupolillo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0032123

Infected Dendritic Cells Facilitate Systemic Dissemination and Transplacental Passage of the Obligate Intracellular Parasite Neospora caninum in Mice
Cited by: 58
Author(s): Esther Collantes-Fernández, Romanico B. G. Arrighi, Gema Álvarez‐García, Jessica M. Weidner, Javier Regidor‐Cerrillo, John C. Boothroyd, Luis Miguel Ortega‐Mora, Antonio Barragán
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0088945

Prioritizing Populations for Conservation Using Phylogenetic Networks
Cited by: 64
Author(s): Logan A. Volkmann, Iain Martyn, Vincent Moulton, Andreas Spillner, Arne Ø. Mooers
Software Mentions: 1
Published: over 10 years ago

10.1002/ece3.7914

Mating systems and predictors of relative reproductive success in a Cutthroat Trout subspecies of conservation concern
Cited by: 6
Author(s): John S. Hargrove, Jesse McCane, Curtis J. Roth, Brett High, Matthew R. Campbell
Software Mentions: 1
Published: over 3 years ago

10.3897/BDJ.9.e65317

Fish species richness in the Terminos Lagoon: An occurrence data compilation of four sampling campaigns along a multidecadal series
Cited by: 2
Author(s): Carlos E. Paz-Ríos, Atahualpa Sosa-López, Yassir Edén Torres‐Rojas, Julia Ramos-Miranda, Rodolfo E. del Río-Rodríguez
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0078102

The Transcriptional Repressor TupA in Aspergillus niger Is Involved in Controlling Gene Expression Related to Cell Wall Biosynthesis, Development, and Nitrogen Source Availability
Cited by: 19
Author(s): Doreen Schachtschabel, Mark Arentshorst, Benjamin Nitsche, Sam Morris, Kristian Fog Nielsen, Cees A. M. J. J. van den Hondel, Frans M. Klis, Arthur F. J. Ram
Software Mentions: 1
Published: about 11 years ago

10.1007/s10531-020-02063-w

Low diversity or poorly explored? Mesophotic molluscs highlight undersampling in the Eastern Mediterranean
Cited by: 13
Author(s): Paolo G. Albano, Michele Azzarone, Bruno Amati, Cesare Bogi, Bruno Sabelli, Gil Rilov
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0123533

Sequence, Structure and Ligand Binding Evolution of Rhodopsin-Like G Protein-Coupled Receptors: A Crystal Structure-Based Phylogenetic Analysis
Cited by: 45
Author(s): Steffen Wolf, Stefan Grünewald
Software Mentions: 1
Published: over 9 years ago

10.1155/2017/4397340

Flavonoids as Putative Inducers of the Transcription Factors Nrf2, FoxO, and PPAR<i>γ</i>
Cited by: 55
Author(s): Kathrin Pallauf, Nils Duckstein, Mario Hasler, Lars‐Oliver Klotz, Gerald Rimbach
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0103213

Discriminating Micropathogen Lineages and Their Reticulate Evolution through Graph Theory-Based Network Analysis: The Case of Trypanosoma cruzi, the Agent of Chagas Disease
Cited by: 4
Author(s): Sophie Arnaud–Haond, Yann Moalic, Christian Barnabé, Francisco J. Ayala, Michel Tibayrenc
Software Mentions: 1
Published: over 10 years ago

10.1186/s12898-019-0260-x

A systematic survey of regional multi-taxon biodiversity: evaluating strategies and coverage
Cited by: 24
Author(s): Ane Kirstine Brunbjerg, Hans Henrik Bruun, Lars Brøndum, Aimée T. Classen, Lars Dalby, Kåre Fog, Tobias Guldberg Frøslev, Irina Goldberg, Anders J. Hansen, Morten D. D. Hansen, Toke T. Høye, Anders A. Illum, Thomas Læssøe, Gregory S. Newman, Lars Skipper, Ulrik Søchting, Rasmus Ejrnæs
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0242793

Correlation of genetic alterations by whole-exome sequencing with clinical outcomes of glioblastoma patients from the Lebanese population
Cited by: 1
Author(s): Fadi Saadeh, Rami Z. Morsi, Abdullah El-Kurdi, Georges Nemer, Rami Mahfouz, Maya Charafeddine, Jessica Khoury, Marwan Najjar, Pierre Khoueiry, Hazem Assi
Software Mentions: 1
Published: almost 4 years ago

10.3390/molecules24244455

Beneficial Metabolic Effects of Chitosan and Chitosan Oligosaccharide on Epididymal WAT Browning and Thermogenesis in Obese Rats
Cited by: 18
Author(s): Jin Wang, Wanping He, Di Yang, Hua Cao, Yan Bai, Jiao Guo, Zhixing Su
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.11375

Mining TCGA database for gene expression in ovarian serous cystadenocarcinoma microenvironment
Cited by: 5
Author(s): Youzheng Xu, Yixin Xu, Chun Wang, Baoguo Xia, Qingling Mu, Shaohong Luan, Jun Fan
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0067090

Fine-Grained Semantic Categorization across the Abstract and Concrete Domains
Cited by: 59
Author(s): Marta Ghio, Matilde M. Vaghi, Marco Tettamanti
Software Mentions: 1
Published: over 11 years ago

10.1093/gerona/glz175

Sex-Specific Responses of Life Span and Fitness to Variation in Developmental Versus Adult Diets in Drosophila melanogaster
Cited by: 21
Author(s): Elizabeth M. L. Duxbury, Tracey Chapman
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-14196-0

Genetic and phenotypic characterization of the novel mouse substrain C57BL/6N Korl with increased body weight
Cited by: 6
Author(s): Kyung-Min Choi, Jae‐Hoon Jung, Young Min Cho, Kwondo Kim, Mi‐Gyeong Kim, Jin-Ho Kim, Huibae Kim, Hee Jung Shin, Hae Deun Kim, Seung-Tae Chung, Seoae Cho, Myeon-Woo Chung
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0112786

Whole Blood Transcriptional Profiling Reveals Deregulation of Oxidative and Antioxidative Defence Genes in Myelofibrosis and Related Neoplasms. Potential Implications of Downregulation of Nrf2 for Genomic Instability and Disease Progression
Cited by: 55
Author(s): Hans Carl Hasselbalch, Mads Thomassen, Caroline Hasselbalch Riley, Lasse Kjær, Thomas Stauffer Larsen, Morten Krogh Jensen, Ole Weis Bjerrum, Torben A. Kruse, Vibe Skov
Software Mentions: 1
Published: about 10 years ago

10.1111/pbi.13056

<scp>ERF</scp>109 of trifoliate orange (<i>Poncirus trifoliata</i> (L.) Raf.) contributes to cold tolerance by directly regulating expression of <i>Prx1</i> involved in antioxidative process
Cited by: 68
Author(s): Min Wang, Wen-Shan Dai, Juan Du, Ruhong Ming, Bachar Dahro, Jihong Liu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0066169

The Effect of Expertise on Eye Movement Behaviour in Medical Image Perception
Cited by: 72
Author(s): Raymond Bertram, Laura Helle, Johanna K. Kaakinen, Erkki Svedström
Software Mentions: 1
Published: over 11 years ago

10.1111/pbi.13075

The basic helix‐loop‐helix transcription factor, Os<scp>PIL</scp>15, regulates grain size via directly targeting a purine permease gene <i>Os<scp>PUP</scp>7</i> in rice
Cited by: 38
Author(s): Xin Ji, Yanxiu Du, Fēi Li, Hong Sun, Jing Zhang, Junzhou Li, Ting Peng, Zhouping Xin, Quanzhi Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.3000872

Nucleotide de novo synthesis increases breast cancer stemness and metastasis via cGMP-PKG-MAPK signaling pathway
Cited by: 53
Author(s): Yajing Lyu, Xiaoshuang Wang, Xiaoyü Li, Guang-wei Xu, Y. Bai, Jiayi Wu, Yongjun Piao, Yi Shi, Rong Xiang, Longlong Wang
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0051134

Pupil Dilation Co-Varies with Memory Strength of Individual Traces in a Delayed Response Paired-Associate Task
Cited by: 51
Author(s): Hedderik van Rijn, Jelle R. Dalenberg, Jelmer P. Borst, Simone Sprenger
Software Mentions: 1
Published: almost 12 years ago

10.1002/ece3.5550

The influence of ecological and life history factors on ectothermic temperature–size responses: Analysis of three Lycaenidae butterflies (Lepidoptera)
Cited by: 12
Author(s): Rebecca J. Wilson, Stephen J. Brooks, Phillip B. Fenberg
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1005817

The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis
Cited by: 34
Author(s): Kian Hématy, Yannick Bellec, Ram Podicheti, Nathalie Bouteiller, Pauline Anne, Céline Morineau, Richard P. Haslam, Frédéric Beaudoin, Johnathan A. Napier, Keithanne Mockaitis, Dominique Gagliardi, Hervé Vaucheret, Heike Lange, Jean-Denis Faure
Software Mentions: 1
Published: almost 9 years ago

10.1093/geronb/gbaa084

Up and About: Older Adults’ Well-being During the COVID-19 Pandemic in a Swedish Longitudinal Study
Cited by: 161
Author(s): Marie Kivi, Isabelle Hansson, Pär Bjälkebring
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.4287

Links between blood parasites, blood chemistry, and the survival of nestling American crows
Cited by: 16
Author(s): Andrea K. Townsend, Sarah S. Wheeler, David Freund, Ravinder N. M. Sehgal, Walter M. Boyce
Software Mentions: 1
Published: over 6 years ago

10.3390/v9090252

Analysis of Class I Major Histocompatibility Complex Gene Transcription in Human Tumors Caused by Human Papillomavirus Infection
Cited by: 27
Author(s): Steven F. Gameiro, Ali Zhang, Farhad Ghasemi, John W. Barrett, Anthony C. Nichols, Joe S. Mymryk
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-44996-5

Population divergence and gene flow in two East Asian shorebirds on the verge of speciation
Cited by: 11
Author(s): Keren R. Sadanandan, Clemens Küpper, Grace Kah Mun Low, Cheng‐Te Yao, Yue Li, Tao Xu, Frank E. Rheindt, Shaoyuan Wu
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/520719

Experimenter Effects on Pain Reporting in Women Vary across the Menstrual Cycle
Cited by: 11
Author(s): Jacob M. Vigil, Jared DiDomenico, Chance Strenth, Patrick Coulombe, Eric Kruger, Andrea A. Mueller, Diego Guevara Beltrán, Ian M. Adams
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0190096

Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon
Cited by: 37
Author(s): Lei Gao, Shanjiang Zhao, Xingrong Lu, Nan He, Huiling Zhu, Junling Dou, Wenge Liu
Software Mentions: 1
Published: almost 7 years ago

10.1007/s40291-020-00462-x

Use of an Integrated Pan-Cancer Oncology Enrichment Next-Generation Sequencing Assay to Measure Tumour Mutational Burden and Detect Clinically Actionable Variants
Cited by: 31
Author(s): Valerie Pestinger, Matthew Smith, Toju Sillo, John M. Findlay, Jean-François Laes, Gerald S. Martin, Gary Middleton, Philippe Taniere, Andrew D Beggs
Software Mentions: 1
Published: over 4 years ago

10.1155/2018/2604064

Uterine Artery Doppler in Pregnancy: Women with PCOS Compared to Healthy Controls
Cited by: 3
Author(s): Solhild Stridsklev, Øyvind Salvesen, Kjell Å. Salvesen, Sven Magnus Carlsen, Eszter Vanky
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0104867

Transcriptional Response of Musca domestica Larvae to Bacterial Infection
Cited by: 24
Author(s): Ting Tang, Xiang Li, Xue Yang, Xue Yu, Jianghui Wang, Fengsong Liu, Dawei Huang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0186855

Enhanced chromatin accessibility of the dosage compensated Drosophila male X-chromosome requires the CLAMP zinc finger protein
Cited by: 28
Author(s): Jennifer A. Urban, Guray Kuzu, Sarah K. Bowman, Benjamin S. Scruggs, Telmo Henriques, Robert E. Kingston, Karen Adelman, Michael Y. Tolstorukov, Erica Larschan
Software Mentions: 1
Published: about 7 years ago

10.1016/j.ijfoodmicro.2019.108382

Prevalence of Campylobacter and Salmonella in African food animals and meat: A systematic review and meta-analysis
Cited by: 72
Author(s): Kate M. Thomas, William A. de Glanville, G. C. Barker, Jackie Benschop, Joram Buza, Sarah Cleaveland, Margaret A. Davis, Nigel French, Blandina T. Mmbaga, Gerard Prinsen, Emmanuel S. Swai, Ruth N. Zadoks, John A. Crump
Software Mentions: 1
Published: almost 5 years ago

10.1002/ece3.3916

Subtle variation in size and shape of the whole forewing and the red band among co‐mimics revealed by geometric morphometric analysis in <i>Heliconius</i> butterflies
Cited by: 9
Author(s): Dirleane Ottonelli Rossato, Danessa Schardong Boligon, Rodrigo Fornel, Marcus R. Kronforst, Gislene Lopes Gonçalves, Gilson R. P. Moreira
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0151529

Effect of Temperature Downshift on the Transcriptomic Responses of Chinese Hamster Ovary Cells Using Recombinant Human Tissue Plasminogen Activator Production Culture
Cited by: 50
Author(s): Andrea Bedoya-López, Karel Estrada, Alejandro Sánchez-Flores, Octavio T. Ramı́rez, Claudia Altamirano, Lorenzo Segovia, Juan Miranda-Ríos, Mauricio A. Trujillo‐Roldán, Norma A. Valdez‐Cruz
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0164724

Ovarian Transcriptome Analysis of Vitellogenic and Non-Vitellogenic Female Banana Shrimp (Fenneropenaeus merguiensis)
Cited by: 16
Author(s): Uraipan Saetan, Unitsa Sangket, Panchalika Deachamag, Wilaiwan Chotigeat
Software Mentions: 1
Published: about 8 years ago

10.1007/s00262-021-02852-4

Efficacy and safety of anti-PD-1-based therapy in combination with PARP inhibitors for patients with advanced solid tumors in a real-world setting
Cited by: 8
Author(s): Zhaozhen Wu, Haitao Tao, Sujie Zhang, Xiao Wang, Junxun Ma, Ruixin Li, Zhefeng Liu, Jinliang Wang, Pengfei Cui, Shixue Chen, Di Huang, Ziwei Huang, Xuan Zheng, Yi Hu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0159194

Time-Course Study of the Transcriptome of Peripheral Blood Mononuclear Cells (PBMCs) from Sheep Infected with Fasciola hepatica
Cited by: 25
Author(s): Cristian A. Álvarez Rojas, Jean-Pierre Y. Scheerlinck, Brendan R E Ansell, Ross S. Hall, Robin B. Gasser, Aaron R. Jex
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.5041

When to cut your losses: Dispersal allocation in an asexual filamentous fungus in response to competition
Cited by: 8
Author(s): Justin Y. Chan, Stephen P. Bonser, Jeff R. Powell, William K. Cornwell
Software Mentions: 1
Published: over 5 years ago

10.1186/s12935-020-01428-z

Establishment of a novel cell cycle-related prognostic signature predicting prognosis in patients with endometrial cancer
Cited by: 22
Author(s): Jinhui Liu, Jie Mei, Siyue Li, Zhipeng Wu, Yan Zhang
Software Mentions: 1
Published: over 4 years ago

10.1186/s12885-021-08078-y

RB1 and TP53 co-mutations correlate strongly with genomic biomarkers of response to immunity checkpoint inhibitors in urothelial bladder cancer
Cited by: 16
Author(s): Ramón González Manzano, Ana Catalán-Latorre, Antonio Brugarolas
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0158784

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus
Cited by: 103
Author(s): Raj Kumar Joshi, Swati Megha, Urmila Basu, Masudur Rahman, Nat N. V. Kav
Software Mentions: 1
Published: over 8 years ago

10.1186/s13023-020-01629-9

Gene expression profiling of orbital muscles in treatment-resistant ophthalmoplegic myasthenia gravis
Cited by: 5
Author(s): Tarin A. Europa, Melissa Nel, Jeannine M Heckmann
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0160338

Transcriptome Analysis of Storage Roots and Fibrous Roots of the Traditional Medicinal Herb Callerya speciosa (Champ.) ScHot
Cited by: 17
Author(s): Li Xu, Jiabin Wang, Ming Lei, Li Li, Yuhua Fu, Zhunian Wang, Meng-Fei Ao, Zhiying Li
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.202238

Intra-tumoral heterogeneity and immune responses predicts prognosis of gastric cancer
Cited by: 6
Author(s): Feng Wu, Yue Wang, Siyuan Chen, Xiaoyan Zhu
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0212449

Functional analysis finds differences on the muscle transcriptome of pigs fed an n-3 PUFA-enriched diet with or without antioxidant supplementations
Cited by: 6
Author(s): Marika Vitali, Rubina Sirri, Martina Zappaterra, Paolo Zambonelli, Giulia Giannini, Domenico Pietro Lo Fiego, Roberta Davoli
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0066521

Dissecting the Characteristics and Dynamics of Human Protein Complexes at Transcriptome Cascade Using RNA-Seq Data
Cited by: 3
Author(s): Geng Chen, Jiwei Chen, Caiping Shi, Leming Shi, Weida Tong, Tieliu Shi
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0221540

Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems
Cited by: 6
Author(s): Jorge Díaz-Riaño, Leonardo Posada, Iván Camilo Acosta, Carlos A. Ruiz-Pérez, Catalina García-Castillo, Alejandro Reyes, María Mercedes Zambrano
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers10120520

Oncogenic Activation of Nrf2, Though as a Master Antioxidant Transcription Factor, Liberated by Specific Knockout of the Full-Length Nrf1α that Acts as a Dominant Tumor Repressor
Cited by: 36
Author(s): Lu Qiu, Meng Wang, Shaofan Hu, Xufang Ru, Yong Ren, Zhengwen Zhang, Siwang Yu, Yiguo Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41418-018-0157-9

Uric acid: a potent molecular contributor to pluripotent stem cell cardiac differentiation via mesoderm specification
Cited by: 13
Author(s): Bingbing Ke, Yujie Zeng, Zhihong Zhao, Fuzhu Han, Taoyan liu, Jingyi Wang, Anila Khalique, Wenjing Lü, James J.H. Chong, Feng Lan, Hua He
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-03343-7

Period1 mediates rhythmic metabolism of toxins by interacting with CYP2E1
Cited by: 9
Author(s): Weifeng Ge, Tao Wang, Yang Zhao, Yuxuan Yang, Qi Sun, Xiao Yang, Yan Gao, Xi Xu, Jianfa Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41419-019-1384-9

RREB1-induced upregulation of the lncRNA AGAP2-AS1 regulates the proliferation and migration of pancreatic cancer partly through suppressing ANKRD1 and ANGPTL4
Cited by: 73
Author(s): Bingqing Hui, Hao Ji, Yetao Xu, Juan Wang, Zhonghua Ma, Chongguo Zhang, Yan Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41420-020-00340-9

Cardiomyocyte-restricted high-mobility group box 1 (HMGB1) deletion leads to small heart and glycolipid metabolic disorder through GR/PGC-1α signalling
Cited by: 6
Author(s): Peng Yu, Ming Liu, Baoli Zhang, Ying Yu, Enyong Su, Shiyao Xie, Lei Zhang, Xue Yang, Hong Jiang, Ruizhen Chen, Yunzeng Zou, Junbo Ge
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-01224-5

A flavin-dependent monooxygenase catalyzes the initial step in cyanogenic glycoside synthesis in ferns
Cited by: 17
Author(s): Sara Thodberg, Mette Sørensen, Matteo Bellucci, Christoph Crocoll, Amalie Kofoed Bendtsen, David R. Nelson, Mohammed Saddik Motawia, Birger Lindberg Møller, Elizabeth Heather Jakobsen Neilson
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0184976

Lactobacillus paracasei feeding improves immune control of influenza infection in mice
Cited by: 69
Author(s): Nouria Belkacem, Nicolas Serafini, Richard Wheeler, Muriel Derrien, Lilia Boucinha, Aurélie Couesnon, Nadine Cerf–Bensussan, Ivo Gomperts Boneca, James P. Di Santo, Muhamed-Kheir Taha, Raphaëlle Bourdet‐Sicard
Software Mentions: 1
Published: about 7 years ago

10.1242/dev.123547

Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
Cited by: 335
Author(s): Paul Blakeley, Norah M. E. Fogarty, Ignacio del Valle, Sissy E. Wamaitha, Xiaoming Hu, Kay Elder, Philip Snell, Leila Christie, Paul Robson, Kathy K. Niakan
Software Mentions: 1
Published: almost 10 years ago

10.1242/dmm.024109

A mutation disrupting TET1 activity alters the expression of genes critical for neural tube closure in the tuft mouse
Cited by: 12
Author(s): Keith S. K. Fong, Robert B. Hufnagel, Vedbar S. Khadka, Michael J. Corley, Alika K. Maunakea, Ben Fogelgren, Zubair M. Ahmed, Scott Lozanoff
Software Mentions: 1
Published: almost 9 years ago

10.12688/f1000research.19140.1

Iron Hack - A symposium/hackathon focused on porphyrias, Friedreich’s ataxia, and other rare iron-related diseases
Cited by: 9
Author(s): Glória C. Ferreira, Jenna Oberstaller, Renée Fonseca, Thomas E. Keller, Swamy Rakesh Adapa, Justin Gibbons, Chengqi Wang, Xiaoming Liu, Li Chang, Minh Pham, Guy W. Dayhoff, Linh M. Duong, Luis Tañón Reyes, Luciano Enrique Laratelli, Douglas M. Franz, Segun Fatumo, Atm Golam Bari, Audrey Freischel, Lindsey Fiedler, Omkar Dokur, Krishna Deo Sharma, Deborah Cragun, Ben Busby, Rays H. Y. Jiang
Software Mentions: 1
Published: over 5 years ago

10.1186/1476-072X-11-26

Is temperature the main cause of dengue rise in non-endemic countries? The case of Argentina
Cited by: 38
Author(s): Aníbal Eduardo Carbajo, María Victoria Cardo, Darío Vezzani
Software Mentions: 1
Published: almost 13 years ago

10.3389/fgene.2021.625741

Loss of Long Distance Co-Expression in Lung Cancer
Cited by: 16
Author(s): Sergio Andonegui-Elguera, José María Zamora-Fuentes, Jesús Espinal-Enríquez, Enrique Hernández‐Lemus
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00301

The Impact of Chronic Heat Stress on the Growth, Survival, Feeding, and Differential Gene Expression in the Sea Urchin Strongylocentrotus intermedius
Cited by: 27
Author(s): Yaoyao Zhan, Jiaxiang Li, Jiangtao Sun, Weijie Zhang, Yingying Li, Donyao Cui, Wanbin Hu, Yaqing Chang
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2014.00118

Toxic effects of decabromodiphenyl ether (BDE-209) on human embryonic kidney cells
Cited by: 21
Author(s): Min Li, Zhenping Liu, Liang Gu, Rong Yin, Huarong Li, Xiaobai Zhang, Tongcheng Cao, Cizhong Jiang
Software Mentions: 1
Published: over 10 years ago

10.3389/fimmu.2020.569671

Systems Immunology Analysis Reveals an Immunomodulatory Effect of Snail-p53 Binding on Neutrophil- and T Cell-Mediated Immunity in KRAS Mutant Non-Small Cell Lung Cancer
Cited by: 5
Author(s): Sarah Hammoudeh, Thenmozhi Venkatachalam, Abdul Wahid Ansari, Riyad Bendardaf, Qutayba Hamid, Mohamed Rahmani, Rifat Hamoudi
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2019.00149

Transcriptome Profile in Hippocampus During Acute Inflammatory Response to Surgery: Toward Early Stage of PND
Cited by: 17
Author(s): Xuwu Xiang, Yang Yu, Xiaodong Tang, Manli Chen, Yan‐Song Zheng, Shengmei Zhu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0158774

RIPK3 Is Largely Dispensable for RIG-I-Like Receptor- and Type I Interferon-Driven Transcriptional Responses to Influenza A Virus in Murine Fibroblasts
Cited by: 6
Author(s): Shoko Nogusa, Michael Slifker, Justin P. Ingram, Roshan J. Thapa, Siddharth Balachandran
Software Mentions: 1
Published: over 8 years ago

10.18632/aging.103781

SYNE1 mutation may enhance the response to immune checkpoint blockade therapy in clear cell renal cell carcinoma patients
Cited by: 18
Author(s): Pengju Li, Jeifei Xiao, Bangfen Zhou, Jinhuan Wei, Junhang Luo, Wei Chen
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.00895-17

A Single Regulator Mediates Strategic Switching between Attachment/Spread and Growth/Virulence in the Plant Pathogen <i>Ralstonia solanacearum</i>
Cited by: 61
Author(s): Devanshi Khokhani, Tiffany M. Lowe‐Power, Tuan Minh Tran, Caitilyn Allen
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.00452

A Comprehensive Analysis of the Small GTPases Ypt7 Involved in the Regulation of Fungal Development and Secondary Metabolism in Monascus ruber M7
Cited by: 16
Author(s): Jiao Liu, Ming Lei, Youxiang Zhou, Fusheng Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84732-6

Genetic variation and population structure in China summer maize germplasm
Cited by: 13
Author(s): Guoping Shu, Gangqiang Cao, Niannian Li, Aifang Wang, Fang Wei, Ting Li, Yang Li, Yunbi Xu, Yibo Wang
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.8096

Bioinformatic analysis identifies potentially key differentially expressed genes in oncogenesis and progression of clear cell renal cell carcinoma
Cited by: 12
Author(s): Haiping Zhang, Jian Zou, Ying Yin, Bo Zhang, Yaling Hu, Jingjing Wang, Hui‐Jun Mu
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2019.00318

Nutritional Interventions Improved Rumen Functions and Promoted Compensatory Growth of Growth-Retarded Yaks as Revealed by Integrated Transcripts and Microbiome Analyses
Cited by: 39
Author(s): Rui Hu, Huawei Zou, Zhisheng Wang, Binghai Cao, Quanhui Peng, Xiaoping Jing, Yixin Wang, Yaqun Shao, Zhaoxi Pei, Xiangfei Zhang, Bai Xue, Lizhi Wang, Suonan Zhao, Yuqing Zhou, Xiangying Kong
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.00846

Dissecting the Acid Stress Response of Rhizobium tropici CIAT 899
Cited by: 15
Author(s): Julio Guerrero-Castro, Luis Lozano, Christian Sohlenkamp
Software Mentions: 1
Published: over 6 years ago

10.3389/fpsyg.2013.00938

Differentiating among pragmatic uses of words through timed sensicality judgments
Cited by: 67
Author(s): Valentina Bambini, Marta Ghio, Andrea Moro, Petra B. Schumacher
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41598-019-53183-5

Human faecal collection methods demonstrate a bias in microbiome composition by cell wall structure
Cited by: 30
Author(s): Emma-Jane Watson, Jennifer Giles, Benjamin L. Scherer, Paul Blatchford
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0184095

The transcriptional landscape of Rhizoctonia solani AG1-IA during infection of soybean as defined by RNA-seq
Cited by: 15
Author(s): Tanya Copley, Raj Duggavathi, Suha Jabaji
Software Mentions: 1
Published: about 7 years ago

10.3389/fnut.2021.671353

Quercetin Ameliorates Gut Microbiota Dysbiosis That Drives Hypothalamic Damage and Hepatic Lipogenesis in Monosodium Glutamate-Induced Abdominal Obesity
Cited by: 17
Author(s): Lijun Zhao, Xiaoqiang Zhu, Mengxuan Xia, Jing Li, An‐Yuan Guo, Yanhong Zhu, Xiangliang Yang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-017-10394-y

Small molecule-based lineage switch of human adipose-derived stem cells into neural stem cells and functional GABAergic neurons
Cited by: 26
Author(s): Jihye Park, Nayeon Lee, Jaekwang Lee, Eun Kyung Choe, Min Kyung Kim, Jeong-Hoon Lee, Min Soo Byun, Myong-Wuk Chon, Seong Who Kim, C. Justin Lee, Ju Han Kim, Jun Soo Kwon, Mi-Sook Chang
Software Mentions: 1
Published: about 7 years ago

10.3389/fphar.2018.00616

Transcriptome Profiling Analysis Reveals the Potential Mechanisms of Three Bioactive Ingredients of Fufang E’jiao Jiang During Chemotherapy-Induced Myelosuppression in Mice
Cited by: 15
Author(s): Xue Li, Yan Zhang, Zhuping Hong, Gong Shouliang, Wei Liu, Xiangshan Zhou, Yangen Sun, Jing Qian, Haibin Qu
Software Mentions: 1
Published: over 6 years ago