Ecosyste.ms: Papers

10.1371/journal.pone.0079298

An Integrated Model of the Transcriptome of HER2-Positive Breast Cancer
Cited by: 18
Author(s): Krishna R. Kalari, Brian M. Necela, Xiaojia Tang, Kevin J. Thompson, Melissa Lau, Jeanette E. Eckel‐Passow, Jennifer M. Kachergus, S. Keith Anderson, Zhifu Sun, Saurabh Baheti, Jennifer M. Carr, Tiffany R. Baker, Poulami Barman, Derek C. Radisky, Richard W. Joseph, Sarah A. McLaughlin, High Seng Chai, Carsten Stephan, David Rossell, Yan W. Asmann, E. Aubrey Thompson, Edith A. Perez
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0181994

Bacterial diversity in Buruli ulcer skin lesions: Challenges in the clinical microbiome analysis of a skin disease
Cited by: 13
Author(s): Chloé Van Leuvenhaege, Koen Vandelannoote, Dissou Affolabi, Françoise Portaels, Ghislain Emmanuel Sopoh, Bouke C. de Jong, Miriam Eddyani, Conor J. Meehan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0015834

A Key Role for Poly(ADP-Ribose) Polymerase 3 in Ectodermal Specification and Neural Crest Development
Cited by: 17
Author(s): Michèle Rouleau, Vishal Saxena, Amélie Rodrigue, Éric R. Paquet, Abbie Gagnon, Michael J. Hendzel, Jean–Yves Masson, Marc Ekker, Guy G. Poirier
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0196510

Postnatal colonization with human "infant-type" Bifidobacterium species alters behavior of adult gnotobiotic mice
Cited by: 53
Author(s): Berkley Luk, Surabi Veeraragavan, Melinda A. Engevik, Miriam Balderas, Angela Major, Jessica K. Runge, Ruth Ann Luna, James Versalovic
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0023785

Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River
Cited by: 178
Author(s): Rohit Ghai, Francisco Rodrı́guez-Valera, Katherine D. McMahon, Danyelle Toyama, Raquel Rinke, Tereza Cristina Souza de Oliveira, José Wagner García, Fernando Miranda, Flávio Henrique-Silva
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0029065

Common Promoter Elements in Odorant and Vomeronasal Receptor Genes
Cited by: 30
Author(s): Jussara S. Michaloski, Pedro A. F. Galante, Maíra H. Nagai, Lucia Armelin‐Correa, Ming-Shan Chien, Hiroaki Matsunami, Bettina Malnic
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0013100

Epigenetic Transgenerational Actions of Vinclozolin on Promoter Regions of the Sperm Epigenome
Cited by: 355
Author(s): Carlos Guerrero-Bosagna, Matthew L. Settles, Ben F. Lucker, Michael K. Skinner
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0039905

Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis
Cited by: 59
Author(s): Amaro E. Trindade-Silva, Cintia P. J. Rua, Genivaldo G. Z. Silva, Bas E. Dutilh, Ana Paula B. Moreira, Robert A. Edwards, Eduardo Hajdu, Gisele Lôbo‐Hajdu, Ana Tereza Ribeiro de Vasconcelos, Roberto G. S. Berlinck, Fabiano L. Thompson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0072402

New Binding Site Conformations of the Dengue Virus NS3 Protease Accessed by Molecular Dynamics Simulation
Cited by: 21
Author(s): Hugo de Almeida, Izabela Marques Dourado Bastos, Bergmann Morais Ribeiro, Bernard Maigret, Jaime M. Santana
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0184977

Double-edged sword of interdisciplinary knowledge flow from hard sciences to humanities and social sciences: Evidence from China
Cited by: 3
Author(s): Meijun Liu, Dongbo Shi, Jiang Li
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0192992

Differences in the intestinal microbiota between uninfected piglets and piglets infected with porcine epidemic diarrhea virus
Cited by: 31
Author(s): Mei Huang, Sheng Yi Wang, Hui Wang, Dong An Cui, Ya Yang, Xi Wang Liu, Xiao Jun Kong, Jian Yong Li
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0079699

Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach
Cited by: 83
Author(s): Samuel Jacquiod, Laure Franqueville, Sébastien Cecillon, Timothy M. Vogel, Pascal Simonet
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0170543

Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma
Cited by: 50
Author(s): Marcos Pérez‐Losada, Lamia Alamri, Keith A. Crandall, Robert J. Freishtat
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0192412

Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts
Cited by: 8
Author(s): James C. Wallace, Jessica Erin Youngblood, Jesse A. Port, Alison C. Cullen, Maria W. Smith, Tomomi Workman, Elaine M. Faustman
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0073606

Water Regime Influences Bulk Soil and Rhizosphere of Cereus jamacaru Bacterial Communities in the Brazilian Caatinga Biome
Cited by: 77
Author(s): Vanessa Nessner Kavamura, Rodrigo Gouvêa Taketani, Milena Duarte Lançoni, Fernando Dini Andreote, Rodrigo Mendes, I. S. de Melo
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0129921

Insight into Dominant Cellulolytic Bacteria from Two Biogas Digesters and Their Glycoside Hydrolase Genes
Cited by: 26
Author(s): Yongjun Wei, Haokui Zhou, Jun Zhang, Lei Zhang, Alei Geng, Fanghua Liu, Guoping Zhao, Shengyue Wang, Zhihua Zhou, Xiaojun Yan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0004981

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function
Cited by: 37
Author(s): Sankaran Sandhya, Saane Sudha Rani, Pankaj Barah, Madabosse Kande Govind, Bernard Offmann, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0225921

Cecal microbiome composition and metabolic function in probiotic treated broilers
Cited by: 19
Author(s): Denise Russi Rodrigues, W.N. Briggs, Audrey F. Duff, K.M. Chasser, G. R. Murugesan, Chasity Pender, Shelby Ramirez, Luis Valenzuela, Lisa R. Bielke
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0204711

Bona fide choline monoxygenases evolved in Amaranthaceae plants from oxygenases of unknown function: Evidence from phylogenetics, homology modeling and docking studies
Cited by: 5
Author(s): Javier Carrillo-Campos, Héctor Riveros‐Rosas, Rogelio Rodríguez‐Sotres, Rosario A. Muñoz‐Clares
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0189404

Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals
Cited by: 20
Author(s): Emma Finlayson-Trick, Landon J. Getz, Patrick D Slaine, Mackenzie Thornbury, Emily Lamoureux, Jamie Cook, Morgan G. I. Langille, Lois E. Murray, Craig McCormick, John R. Rohde, Zhenyu Cheng
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0074983

A Metagenomics Transect into the Deepest Point of the Baltic Sea Reveals Clear Stratification of Microbial Functional Capacities
Cited by: 50
Author(s): Petter Thureborn, Daniel Lundin, Josefin Plathan, Anthony M. Poole, Britt‐Marie Sjöberg, Sara Sjöling
Software Mentions: 1
Published: about 11 years ago

10.1038/s41419-020-2663-1

Sodium butyrate inhibits high cholesterol-induced neuronal amyloidogenesis by modulating NRF2 stabilization-mediated ROS levels: involvement of NOX2 and SOD1
Cited by: 28
Author(s): Seo Yihl Kim, Chang Woo Chae, Hyun Jik Lee, Young Hyun Jung, Gee Euhn Choi, Jun Sung Kim, Jae Ryong Lim, Joo Eun Lee, Ji Hyeon Cho, Hansoo Park, Chang-Ho Park, Ho Jae Han
Software Mentions: 1
Published: over 4 years ago

10.1038/s41424-018-0048-x

Meconium microbiome associates with the development of neonatal jaundice
Cited by: 20
Author(s): Tianyu Dong, Ting Chen, Richard Allen White, Xu Wang, Wu Hu, Yongsheng Liang, Yuqing Zhang, Chuncheng Lu, Minjian Chen, Heidi Aase, Yankai Xia
Software Mentions: 1
Published: about 6 years ago

10.5936/csbj.201209018

FROM MOLECULAR PHYLOGENETICS TO QUANTUM CHEMISTRY: DISCOVERING ENZYME DESIGN PRINCIPLES THROUGH COMPUTATION
Cited by: 2
Author(s): Troy Wymore, Charles L. Brooks
Software Mentions: 1
Published: about 12 years ago

10.7759/cureus.8706

Workplace Violence Against Doctors in India: A Traditional Review
Cited by: 10
Author(s): Sankuru Santosh K Dora, Humera Batool, Rifath I Nishu, Pousettef Hamid
Software Mentions: 1
Published: over 4 years ago

10.1007/s00284-019-01689-6

High-Throughput Sequencing Reveals the Gut Microbiome of the Bactrian Camel in Different Ages
Cited by: 11
Author(s): Jing He, Lê Thanh Hải, Khongorzul Orgoldol, Yang Li, Ming Liang, Fucheng Guo, Guowei Li
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2019.103934

Data of metal and microbial analyses from anaerobic co-digestion of organic and mineral wastes
Cited by: 5
Author(s): Burhan Shamurad, Neil Gray, Evangelos Petropoulos, Shamas Tabraiz, Kishor Acharya, Marcos Quintela-Baluja, Paul J. Sallis
Software Mentions: 1
Published: over 5 years ago

10.1186/s13000-020-01022-x

Cutaneous T-cell lymphomas with pathogenic somatic mutations and absence of detectable clonal T-cell receptor gene rearrangement: two case reports
Cited by: 7
Author(s): Rebecca Rojansky, Sebastian Fernandez‐Pol, Erica Wang, Kerri E. Rieger, Roberto A. Novoa, James L. Zehnder, Christian A. Kunder, Youn H. Kim, Michael S. Khodadoust, Ryanne A. Brown
Software Mentions: 1
Published: about 4 years ago

10.1155/2021/5576683

Identification of an m6A-Related Signature as Biomarker for Hepatocellular Carcinoma Prognosis and Correlates with Sorafenib and Anti-PD-1 Immunotherapy Treatment Response
Cited by: 19
Author(s): Hongye Jiang, Gang Ning, Yensheng Wang, Weibiao Lv
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02764

Shifts of Hydrogen Metabolism From Methanogenesis to Propionate Production in Response to Replacement of Forage Fiber With Non-forage Fiber Sources in Diets in vitro
Cited by: 44
Author(s): Kun Wang, Xuemei Nan, K. S. Chu, Jinjin Tong, Liguo Yang, Shourong Zheng, Guanglei Zhao, Linshu Jiang, Benhai Xiong
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.583995

Differences in Tetracycline Antibiotic Resistance Genes and Microbial Community Structure During Aerobic Composting and Anaerobic Digestion
Cited by: 11
Author(s): Luyun Luo, Chengjia Zhang, Zhuo Zhang, Jing Peng, Yongqin Han, Pei Wang, Xiaoting Kong, Hamid Muhammad Rizwan, Deyong Zhang, Pin Su, Yong Liu
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2020.01162

Development of a Novel Metagenomic Biomarker for Prediction of Upper Gastrointestinal Tract Involvement in Patients With Crohn’s Disease
Cited by: 11
Author(s): Min Seob Kwak, Jae Myung, Hyun Phil Shin, Jung Won Jeon, Jin Young Yoon
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.723152

Respiratory Microbiota Profiles Associated With the Progression From Airway Inflammation to Remodeling in Mice With OVA-Induced Asthma
Cited by: 7
Author(s): Jun Zheng, Qian Wu, Zou Ya, Meifen Wang, Ling He, Shouwu Guo
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2019.03125

Modulation of Gut Microbial Community and Metabolism by Dietary Glycyl-Glutamine Supplementation May Favor Weaning Transition in Piglets
Cited by: 17
Author(s): Yiqin Yan, Baoyang Xu, Boqi Yin, Xichen Xu, Youguo Niu, Yimei Tang, Xinkai Wang, Chunlin Xie, Tao Yang, Shengqian Zhou, Xianghua Yan, Libao Ma
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2018.02053

Toward Integrative Bacterial Monitoring of Metolachlor Toxicity in Groundwater
Cited by: 3
Author(s): Gwenaël Imfeld, Ludovic Besaury, Bruno Maucourt, Stéphanie Donadello, Nicole Baran, Stéphane Vuilleumier
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.02793

The Fecal Metagenomics of Malayan Pangolins Identifies an Extensive Adaptation to Myrmecophagy
Cited by: 16
Author(s): Jinge Ma, Haiying Jiang, Linmiao Li, Xiujuan Zhang, Guanyu Li, Huiming Li, Xue-Jun Jin, Jinping Chen
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.00272

Anti-obesity Effect of Capsaicin in Mice Fed with High-Fat Diet Is Associated with an Increase in Population of the Gut Bacterium Akkermansia muciniphila
Cited by: 104
Author(s): Wei Shen, Mengyu Shen, Xia Zhao, Huajian Zhu, Yuhui Yang, Shuguang Lu, Yinling Tan, Gang Li, Ming Li, Jing Wang, Fuquan Hu, Shuai Le
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2017.01967

Inheritance and Establishment of Gut Microbiota in Chickens
Cited by: 130
Author(s): Jinmei Ding, Ronghua Dai, Lingyu Yang, Chuan He, Ke Xu, Shuyun Liu, Wenjing Zhao, Lü Xiao, Liulin Luo, Yan Zhang, He Meng
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.00731

Indigo Naturalis Alleviates Dextran Sulfate Sodium-Induced Colitis in Rats via Altering Gut Microbiota
Cited by: 33
Author(s): Zijie Sun, Junxiang Li, Yi Dai, Wenting Wang, Rui Shi, Zhibin Wang, Panghua Ding, Qiongqiong Lu, Hui Jiang, Wenjing Pei, Xingjie Zhao, Yi Guo, Liu Jiali, Xiang Tan, Tangyou Mao
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.01263

The Bacterial and Fungal Microbiota of Nelore Steers Is Dynamic Across the Gastrointestinal Tract and Its Fecal-Associated Microbiota Is Correlated to Feed Efficiency
Cited by: 22
Author(s): Déborah Romaskevis Gomes Lopes, Alex J. La Reau, Márcio de Souza Duarte, Edênio Detmann, Cláudia Braga Pereira Bento, Maria Eugênia Zerlotti Mercadante, Sarah Figueiredo Martins Bonilha, Garret Suen, Hilário Cuquetto Mantovani
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00147

Metagenomic Functional Potential Predicts Degradation Rates of a Model Organophosphorus Xenobiotic in Pesticide Contaminated Soils
Cited by: 58
Author(s): Thomas C. Jeffries, Smriti Rayu, Uffe N. Nielsen, Kaitao Lai, Ali Zeeshan Ijaz, Loïc Nazaries, Brajesh K. Singh
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.611323

Resveratrol Improves Liver Steatosis and Insulin Resistance in Non-alcoholic Fatty Liver Disease in Association With the Gut Microbiota
Cited by: 22
Author(s): Fang Du, Rongfeng Huang, Dan Lin, Yuying Wang, Xiao-Huang Yang, Xiaoyun Huang, Biyun Zheng, Zhuo Chen, Yanlei Huang, Xiaozhong Wang, Fenglin Chen
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2014.00646

Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya
Cited by: 73
Author(s): Tom O. Delmont, Katherine Hammar, Hugh W. Ducklow, Patricia L. Yager, Anton F. Post
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2018.02509

Dynamic Distribution of Gut Microbiota in Goats at Different Ages and Health States
Cited by: 74
Author(s): Yujian Wang, Hao Zhang, Lin Zhu, Yan Xu, Na Liu, Xiaomei Sun, Liping Hu, He Huang, Kai Wei, Rui‐Liang Zhu
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.03002

Non-isoflavones Diet Incurred Metabolic Modifications Induced by Constipation in Rats via Targeting Gut Microbiota
Cited by: 23
Author(s): Jialin Liu, Ruirui Chang, Xiaobei Zhang, Zhongzhao Wang, Jing Wen, Tingting Zhou
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01247

Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling
Cited by: 238
Author(s): Ashish Malik, Somak Chowdhury, Veronika Schlager, Anna Oliver, Jérémy Puissant, Perla Griselle Mellado Vazquez, Nico Jehmlich, Martin von Bergen, Robert I. Griffiths, Gerd Gleixner
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.01988

Intestinal Microbiome-Metabolome Responses to Essential Oils in Piglets
Cited by: 55
Author(s): Yuan Li, Xin Fu, Xin Ma, Shijie Geng, Xin Jiang, Qingyao Huang, Caihong Hu, Xinyan Han
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.688839

Variations of Soybean Meal and Corn Mixed Substrates in Physicochemical Characteristics and Microbiota During Two-Stage Solid-State Fermentation
Cited by: 19
Author(s): Weixu Su, Zipeng Jiang, Lihong Hao, Wentao Li, Tao Gong, Yu Zhang, Shuai Du, Cheng Wang, Zhaoqing Lu, Mingliang Jin, Yizhen Wang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.00896

Detection of Viable and Total Bacterial Community in the Pit Mud of Chinese Strong-Flavor Liquor Using Propidium Monoazide Combined With Quantitative PCR and 16S rRNA Gene Sequencing
Cited by: 11
Author(s): Guangxun Tan, Rui Zhou, Wenqian Zhang, Yuanliang Hu, Zhiyong Ruan, Jing Li, Changyi Zhang, Dengjin Shen, Nan Peng, Yunxiang Liang, Siming Zhao
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.01548

Gastric Mucosa-Associated Microbial Signatures of Early Gastric Cancer
Cited by: 28
Author(s): Lili Wang, Yongning Xin, Jianhua Zhou, Ziqiang Tian, Chenguang Liu, Xinjuan Yu, Xiangchuan Meng, Weina Jiang, Shou‐Feng Zhao, Qi Dong
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.02890

Echinococcus granulosus Infection Results in an Increase in Eisenbergiella and Parabacteroides Genera in the Gut of Mice
Cited by: 16
Author(s): Jianling Bao, Huajun Zheng, Yuezhu Wang, Xiao Zheng, Li He, Wenjing Qi, Tian Wang, Baoqiang Guo, Gang Guo, Zhaoxia Zhang, Wenbao Zhang, Jun Li, Donald P. McManus
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.01439

Compositional and Functional Analysis of the Microbiome in Tissue and Saliva of Oral Squamous Cell Carcinoma
Cited by: 45
Author(s): Zhen Zhang, Junjie Yang, Qiang Feng, Bin Chen, Meihui Li, Cheng Liang, Mingyu Li, Zhihui Li, Qin Xu, Lei Zhang, Wantao Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00929

Effects of Cultured Root and Soil Microbial Communities on the Disease of Nicotiana tabacum Caused by Phytophthora nicotianae
Cited by: 8
Author(s): Tianbo Liu, Yunhua Xiao, Jie Yin, Tuyong Yi, Zhi Zhou, Tom Hsiang, Qianjun Tang, Ching Ching Wu
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.01292

Diet Control More Intensively Disturbs Gut Microbiota Than Genetic Background in Wild Type and ob/ob Mice
Cited by: 12
Author(s): Jing-Hua Wang, Na Rae Shin, Soo-Kyoung Lim, Ungjin Im, Eun-Ji Song, Young-Do Nam, Hojun Kim
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02547

Microbiome and Metabolome Analyses of Milk From Dairy Cows With Subclinical Streptococcus agalactiae Mastitis—Potential Biomarkers
Cited by: 35
Author(s): Jinjin Tong, Hua Zhang, Yonghong Zhang, Benhai Xiong, Linshu Jiang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.01187

Dissecting Community Structure in Wild Blueberry Root and Soil Microbiome
Cited by: 37
Author(s): Svetlana N. Yurgel, Gavin M. Douglas, Ashley Dusault, David Percival, Morgan G. I. Langille
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01168

The Composition, Diversity and Predictive Metabolic Profiles of Bacteria Associated With the Gut Digesta of Five Sea Urchins in Luhuitou Fringing Reef (Northern South China Sea)
Cited by: 13
Author(s): Xiaopeng Yu, Kefu Yu, Jiayuan Liang, Yinghui Wang, Baoqing Hu, Xueyong Huang, Biao Chen, Zhenjun Qin
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02415

Immunodeficiency Promotes Adaptive Alterations of Host Gut Microbiome: An Observational Metagenomic Study in Mice
Cited by: 52
Author(s): Shuyu Zheng, Tingting Zhao, Shuijuan Yuan, Lingyu Yang, Jinmei Ding, Li Cui, Mingqing Xu
Software Mentions: 1
Published: about 5 years ago

10.1080/19490976.2021.1972757

Hyaluronan-induced alterations of the gut microbiome protects mice against <i>Citrobacter rodentium</i> infection and intestinal inflammation
Cited by: 18
Author(s): Tangyou Mao, Chien-Wen Su, Qiaorong Ji, Chih-Yu Chen, Rongjun Wang, Deepak Kumar, Jinggang Lan, Lefei Jiao, Hai Ning Shi
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13099-015-0051-7

Deciphering chicken gut microbial dynamics based on high-throughput 16S rRNA metagenomics analyses
Cited by: 199
Author(s): Mohd Shaufi Mohd Asrore, Chin Chin Sieo, Chun Wie Chong, Han Ming Gan, Yin Wan Ho
Software Mentions: 1
Published: over 9 years ago

10.1186/s13099-016-0099-z

Global investigation of composition and interaction networks in gut microbiomes of individuals belonging to diverse geographies and age-groups
Cited by: 28
Author(s): Deepak Yadav, Tarini Shankar Ghosh, Sharmila S. Mande
Software Mentions: 1
Published: over 8 years ago

10.1002/hep.30661

Enhanced Microbial Bile Acid Deconjugation and Impaired Ileal Uptake in Pregnancy Repress Intestinal Regulation of Bile Acid Synthesis
Cited by: 32
Author(s): Caroline Ovadia, Alvaro Perdones‐Montero, Konstantina Spagou, Ann Smith, Magali Sarafian, María José Gómez-Romero, Elena Bellafante, Louise C. Clarke, Fouzia Sadiq, Vanya Nikolova, Alice Mitchell, Peter H. Dixon, Natalie Santa‐Pinter, Annika Wahlström, Shadi Abu‐Hayyeh, Julian R.F. Walters, Hanns‐Ulrich Marschall, Elaine Holmes, Julian R. Marchesi, Catherine Williamson
Software Mentions: 1
Published: over 5 years ago

10.1186/s40104-020-00490-x

Intrauterine growth restriction alters growth performance, plasma hormones, and small intestinal microbial communities in growing-finishing pigs
Cited by: 20
Author(s): Xiong Li, Jinming You, Wanghong Zhang, Qian Zhu, François Blachier, Yulong Yin, Xiangfeng Kong
Software Mentions: 1
Published: over 4 years ago

10.1007/s13353-017-0418-1

The metagenomic approach to characterization of the microbial community shift during the long-term cultivation of anammox-enriched granular sludge
Cited by: 14
Author(s): Sławomir Ciesielski, Krzysztof Czerwionka, Dominika Sobotka, Tomasz Dulski, Jacek Mąkinia
Software Mentions: 1
Published: almost 7 years ago

10.3390/jcm8040451

H. pylori Eradication Treatment Alters Gut Microbiota and GLP-1 Secretion in Humans
Cited by: 41
Author(s): Isabel Cornejo‐Pareja, Gracia María Martín‐Núñez, M. M. Roca-Rodríguez, Fernando Cardona, Leticia Coín‐Aragüez, Lidia Sánchez-Alcoholado, Carolina Gutiérrez-Repiso, Araceli Muñoz-Garach, José Carlos Fernández‐García, Isabel Moreno-Indias, Francisco J. Tinahones
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/erw275

Systems analysis of<i>cis</i>-regulatory motifs in C₄photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation
Cited by: 16
Author(s): Jiajia Xu, Andrea Bräutigam, Andreas P.M. Weber, Xin‐Guang Zhu
Software Mentions: 1
Published: over 8 years ago

10.1039/c6ra21040f

Effect of the chemical composition of filter media on the microbial community in wastewater biofilms at different temperatures
Cited by: 19
Author(s): Iffat Naz, Douglas Hodgson, Ann Smith, Julian R. Marchesi, Safia Ahmed, Claudio Avignone–Rossa, Devendra Saroj
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12931-019-1246-0

Dysbiosis of lower respiratory tract microbiome are associated with inflammation and microbial function variety
Cited by: 53
Author(s): Kangjie Li, Zilong Chen, Yao Huang, Rui Zhang, Xiaoqian Luan, Tingting Lei, Ling Chen
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep13845

Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw
Cited by: 53
Author(s): Diego Javier Jiménez, Diego Chaves‐Moreno, Jan Dirk van Elsas
Software Mentions: 1
Published: about 9 years ago

10.1038/srep19160

Characterizing the Conformational Landscape of Flavivirus Fusion Peptides via Simulation and Experiment
Cited by: 16
Author(s): Jan K. Marzinek, Rajamani Lakshminarayanan, Eunice Tze Leng Goh, Roland G. Huber, Sadhana Panzade, Chandra Verma, Peter J. Bond
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20111

Enhanced waste activated sludge digestion using a submerged anaerobic dynamic membrane bioreactor: performance, sludge characteristics and microbial community
Cited by: 37
Author(s): Hai‐Sui Yu, Zhiwei Wang, Zhichao Wu, Chaowei Zhu
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep23012

Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms
Cited by: 82
Author(s): Jaejoon Jung, Laurent Philippot, Woojun Park
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24723

Gene expression of Lactobacillus plantarum and the commensal microbiota in the ileum of healthy and early SIV-infected rhesus macaques
Cited by: 15
Author(s): Benjamin L. Golomb, Lauren A. Hirao, Satya Dandekar, Maria L. Marco
Software Mentions: 1
Published: over 8 years ago

10.1038/srep27427

Uncovering the composition of microbial community structure and metagenomics among three gut locations in pigs with distinct fatness
Cited by: 116
Author(s): Hui Yang, Xiaowan Huang, Shouguo Fang, Wenshui Xin, Lusheng Huang, Congying Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32467

Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to Withstand Salinity
Cited by: 137
Author(s): Zhuang Youxiang, Irina S. Druzhinina, Jessy Labbé, Regina S. Redman, Yuan Qin, Russell J. Rodriguez, Chulong Zhang, Gerald A. Tuskan, Fu‐Cheng Lin
Software Mentions: 1
Published: about 8 years ago

10.1038/srep40455

Unraveling the microbial processes of black band disease in corals through integrated genomics
Cited by: 33
Author(s): Yui Sato, Edmund Y. S. Ling, Dmitrij Turaev, Patrick W. Laffy, Karen D. Weynberg, Thomas Rattei, Bette L. Willis, David G. Bourne
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-00580-3

Microbial community and metabolic pathway succession driven by changed nutrient inputs in tailings: effects of different nutrients on tailing remediation
Cited by: 22
Author(s): Mingjiang Zhang, Xingyu Liu, Yibin Li, Guangyuan Wang, Zining Wang, Jiankang Wen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-06112-3

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils
Cited by: 56
Author(s): Antonio J. Fernández‐González, Pilar Martínez‐Hidalgo, José F. Cobo‐Díaz, Pablo J. Villadas, Eustoquio Martínez‐Molina, Nicolás Toro, Susannah G. Tringe, Manuel Fernández‐López
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07420-4

Supplemental thymol and carvacrol increases ileum Lactobacillus population and reduces effect of necrotic enteritis caused by Clostridium perfringes in chickens
Cited by: 51
Author(s): Dafei Yin, Encun Du, Jianmin Yuan, Jinxin Gao, YouLi Wang, Samuel E. Aggrey, Yuming Guo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-11826-5

Metagenomic insight into the microbial networks and metabolic mechanism in anaerobic digesters for food waste by incorporating activated carbon
Cited by: 40
Author(s): Jingxin Zhang, Liwei Mao, Le Zhang, Kai‐Chee Loh, Yanjun Dai, Yen Wah Tong
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12481-6

Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle
Cited by: 94
Author(s): M. G. Thomas, M. J. Webb, Sudeep Ghimire, A. D. Blair, K. C. Olson, Gavin Fenske, Alex Thomas Fonder, Jane Christopher‐Hennings, D. W. Brake, Joy Scaria
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15510-6

Gastric microbiome of Indian patients with Helicobacter pylori infection, and their interaction networks
Cited by: 46
Author(s): Anubhav Das, Verima Pereira, Shruti Saxena, Tarini Shankar Ghosh, D. Anbumani, Satyabrata Bag, Bhabatosh Das, G. Balakrish Nair, Philip Abraham, Sharmila S. Mande
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-18298-7

Characterizing the bacterial microbiota in different gastrointestinal tract segments of the Bactrian camel
Cited by: 42
Author(s): Jing He, Yang Li, Lê Thanh Hải, Ming Liang, Wanting Gao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20322-3

A 5-year field study showed no apparent effect of the Bt transgenic 741 poplar on the arthropod community and soil bacterial diversity
Cited by: 24
Author(s): Lihui Zuo, Ruifu Yang, Zhen Zhi-xian, Junxia Liu, Huang Lei, Minsheng Yang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-20367-4

Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors
Cited by: 79
Author(s): Nsa Dada, Mili Sheth, Kelly A. Liebman, Jesús Pinto, Audrey Lenhart
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-21241-z

The effect of Clostridium butyricum on symptoms and fecal microbiota in diarrhea-dominant irritable bowel syndrome: a randomized, double-blind, placebo-controlled trial
Cited by: 61
Author(s): Yiyuan Sun, Ming Li, Yueyue Li, Lixiang Li, Wen-Zhe Zhai, Peng Wang, Xiaoxiao Yang, Xiang Gu, Lijin Song, Zhen Li, Xiuli Zuo
Software Mentions: 1
Published: almost 7 years ago

10.5334/ijic.5502

How to Ensure Referral and Uptake for COPD Rehabilitation—Part 1: Disentangling Factors in the Cross-Sectorial Workflow of Patients with COPD to Understand why Most Patients are not Referred to Rehabilitation
Cited by: 2
Author(s): Bettina Ravnborg Thude, Anette Brink, Michael Skriver Hansen, Lars Morsø
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13584-019-0319-3

Pharmacovigilance strategy: opportunities for cross-national learning
Cited by: 3
Author(s): Irene Fermont
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph14060555

Ephedra-Treated Donor-Derived Gut Microbiota Transplantation Ameliorates High Fat Diet-Induced Obesity in Rats
Cited by: 27
Author(s): Jing-Hua Wang, Bongsoo Kim, Kyungsun Han, Hojun Kim
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph15040714

A Socio-Technical Exploration for Reducing &amp; Mitigating the Risk of Retained Foreign Objects
Cited by: 9
Author(s): Siobhán Corrigan, Alison Kay, Katie O’Byrne, Dubhfeasa Slattery, Sharon R. Sheehan, Nick McDonald, David Smyth, K. Mealy, Sam Cromie
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph16020221

Impacts of Lean Construction on Safety Systems: A System Dynamics Approach
Cited by: 25
Author(s): Xiuyu Wu, Hongping Yuan, Ge Wang, Shuquan Li, Guangdong Wu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijerph17010011

Cause Analysis of Unsafe Behaviors in Hazardous Chemical Accidents: Combined with HFACs and Bayesian Network
Cited by: 22
Author(s): Xiaowei Li, Tiezhong Liu, Yongkui Liu
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijerph17041266

Rhizosphere Bacterial Community Structure and Predicted Functional Analysis in the Water-Level Fluctuation Zone of the Danjiangkou Reservoir in China During the Dry Period
Cited by: 6
Author(s): Zhaojin Chen, Yang Shao, Yingjun Li, Longshan Lin, Yan Chen, Wei Tian, Bai-Lian Li, Yuying Li
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijerph17145120

Evaluation of Changes in Gut Microbiota in Patients with Crohn’s Disease after Anti-Tnfα Treatment: Prospective Multicenter Observational Study
Cited by: 5
Author(s): Laura Sanchis-Artero, Juan F. Martínez-Blanch, Sergio Manresa-Vera, Ernesto Cortés‐Castell, Josefa Rodríguez-Morales, Xavier Cortés-Rizo
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph18094841

Study Protocol of a Multicenter Randomized Controlled Trial to Tackle Obesity through a Mediterranean Diet vs. a Traditional Low-Fat Diet in Adolescents: The MED4Youth Study
Cited by: 1
Author(s): Noemí Boqué, Lucía Tarro, Alice Rosi, Helena Torrell, Guillermo Saldaña, Elisa Luengo, Zeev Rachman, António Pires, Nuno Tiago Tavares, António Pires, Maria Filomena Botelho, Pedro Mena, Francesca Scazzina, Daniele Del Rio, Antoni Caimari
Software Mentions: 1
Published: over 3 years ago

10.1080/20016689.2017.1264717

Value added medicines: what value repurposed medicines might bring to society?
Cited by: 16
Author(s): Mondher Toumi, C. Rémuzat
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms17050649

Impact of Prematurity and Perinatal Antibiotics on the Developing Intestinal Microbiota: A Functional Inference Study
Cited by: 105
Author(s): Silvia Arboleya, Borja Sánchez, Gonzalo Solı́s, Nuria Fernández, Marta Suárez, Ana María Hernández-Barranco, Christian Milani, Abelardo Margollés, Clara G. de los Reyes‐Gavilán, Marco Ventura, Miguel Gueimonde
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19123827

The Human Microbiota and Obesity: A Literature Systematic Review of In Vivo Models and Technical Approaches
Cited by: 5
Author(s): Lucrecia Carrera-Quintanar, Daniel Ortuño-Sahagún, Noel N Franco-Arroyo, Juan Manuel Viveros–Paredes, Adelaida Sara Minia Zepeda-Morales, Rocío Ivette López-Roa
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21176203

Potential Associations Among Alteration of Salivary miRNAs, Saliva Microbiome Structure, and Cognitive Impairments in Autistic Children
Cited by: 21
Author(s): Marco Ragusa, Maria Santagati, Federica Mirabella, Giovanni Lauretta, Matilde Cirnigliaro, Duilia Brex, Cristina Barbagallo, Carla Noemi Domini, Mariangela Gulisano, Rita Barone, Laura Trovato, Salvatore Massimo Oliveri, Gino Mongelli, Ambra Spitale, Davide Barbagallo, Cinzia Di Pietro, Stefania Stefani, Renata Rizzo, Francesco Purrello
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22073646

Long-Term Iron Deficiency and Dietary Iron Excess Exacerbate Acute Dextran Sodium Sulphate-Induced Colitis and Are Associated with Significant Dysbiosis
Cited by: 6
Author(s): Awad Mahalhal, Michael D. Burkitt, Carrie A. Duckworth, Georgina L. Hold, Barry J. Campbell, D. Mark Pritchard, Chris Probert
Software Mentions: 1
Published: over 3 years ago