10.1371/journal.pone.0023513

Molecular Mechanism of a Green-Shifted, pH-Dependent Red Fluorescent Protein mKate Variant
Cited by: 10
Author(s): Qi Wang, Laura J. Byrnes, Bo Shui, Ute F. Röhrig, Avtar Singh, Dmitriy M. Chudakov, Sergey Lukyanov, Warren R. Zipfel, Michael I. Kotlikoff, Holger Sondermann
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0150189

DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis
Cited by: 37
Author(s): S.P. Hancock, Stefano Stella, Duilio Cascio, Reid C. Johnson
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0152611

Crystal Structure of Human Myotubularin-Related Protein 1 Provides Insight into the Structural Basis of Substrate Specificity
Cited by: 7
Author(s): Seoung Min Bong, Kkabi Son, Seungwon Yang, Jae-Won Park, Jea-Won Cho, Kyung‐Tae Kim, Hackyoung Kim, Seung Jun Kim, Young Jun Kim, Byung Il Lee
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0157070

Structural and Functional Characterization of a Novel Family of Cyclophilins, the AquaCyps
Cited by: 8
Author(s): R.P. Jakob, Philipp A. M. Schmidpeter, Johanna R. Koch, Franz X. Schmid, Timm Maier
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-15-187

Paleo-evolutionary plasticity of plant disease resistance genes
Cited by: 47
Author(s): Rongzhi Zhang, Florent Murat, Caroline Pont, Thierry Langin, Jérôme Salse
Software Mentions: 1
Published: over 12 years ago

10.3390/cancers12010030

Galectin-8 binds to the Farnesylated C-terminus of K-Ras4B and Modifies Ras/ERK Signaling and Migration in Pancreatic and Lung Carcinoma Cells
Cited by: 15
Author(s): Christopher Meinohl, Sarah J. Barnard, Karin Fritz‐Wolf, Monika Unger, Andreea Porr, Marisa Heipel, Stefanie Wirth, Johannes Madlung, Alfred Nordheim, André Menke, Katja Becker, Klaudia Giehl
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-020-6548-6

Genome-wide identification of MAPKKK genes and their responses to phytoplasma infection in Chinese jujube (Ziziphus jujuba Mill.)
Cited by: 10
Author(s): Zhiguo Liu, Lixin Wang, Chaoling Xue, Yuetong Chu, Wei Gao, Yitong Zhao, Jin Zhao, Mengjun Liu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-2759-2

Transcriptome profiling of Diachasmimorpha longicaudata towards useful molecular tools for population management
Cited by: 3
Author(s): M. Constanza Mannino, Máximo Rivarola, Alejandra Carla Scannapieco, Sergio González, Marisa Diana Farber, Jorge Luis Cladera, Silvia Beatriz Lanzavecchia
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-020-07201-w

Genome-wide survey of sucrose non-fermenting 1-related protein kinase 2 in Rosaceae and expression analysis of PbrSnRK2 in response to ABA stress
Cited by: 9
Author(s): Guodong Chen, Jizhong Wang, Xin Qiao, Can Jin, Weike Duan, Xiaochuan Sun, Juyou Wu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-07115-7

A high-density SNP-based genetic map and several economic traits-related loci in Pelteobagrus vachelli
Cited by: 7
Author(s): Guosong Zhang, Jie Li, Jiajia Zhang, Xuefang Liang, Tao Wang, Shaowu Yin
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-12-564

AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome
Cited by: 15
Author(s): Lingling Mei, Xueliang Ding, Suk Ying Tsang, Frank W. Pun, Siu Kin Ng, Jianfeng Yang, Cunyou Zhao, Dezhi Li, Weiqing Wan, Chi Hung Yu, Tze-Ching Tan, Wai Sang Poon, Gilberto Ka Kit Leung, Ho Keung Ng, Liwei Zhang, Hong Xue
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-018-4880-x

Genome-wide investigation of WRKY gene family in pineapple: evolution and expression profiles during development and stress
Cited by: 207
Author(s): Tongxin Xie, Chengjie Chen, Chuhao Li, Jiarou Liu, Chaoyang Liu, Yehua He
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-017-3768-5

Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum
Cited by: 75
Author(s): Wei Wang, Xiaopei Zhang, Fenni Deng, Rui Yuan, Fafu Shen
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-581

Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef)
Cited by: 132
Author(s): Gina Cannarozzi, Sonia Plaza-Wüthrich, Korinna Esfeld, Stéphanie Larti, Yi Song Wilson, Dejene Girma, Edouard de Castro, Solomon Chanyalew, Regula Blösch, Laurent Farinelli, Eric Lyons, Michel Schneider, Laurent Falquet, Cris Kuhlemeier, Kebebew Assefa, Zerihun Tadele
Software Mentions: 1
Published: about 12 years ago

10.3390/jpm11050341

Adherence to Anti-Osteoporotic Treatment and Clinical Implications after Hip Fracture: A Systematic Review
Cited by: 9
Author(s): Ramona Dobre, D Niculescu, R. Petca, R. Popescu, Aida Petca, Cătălina Poiană
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07848-z

Genome-wide identification, expression analysis, and functional study of the GRAS transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]
Cited by: 26
Author(s): Yu Fan, Jun Yan, Dili Lai, Hao Yang, Guoxing Xue, Ailing He, Tao Guo, Long Chen, Xiaobin Cheng, Dabing Xiang, Jingjun Ruan, Jianping Cheng
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-019-5985-6

Genome-wide identification of GRAS genes in Brachypodium distachyon and functional characterization of BdSLR1 and BdSLRL1
Cited by: 21
Author(s): Xinhuan Niu, Shoukun Chen, Jiawei Li, Yue Liu, Wanquan Ji, Haifeng Li
Software Mentions: 1
Published: about 7 years ago

10.1186/s12916-016-0659-6

Genetic variation in Mycobacterium tuberculosis isolates from a London outbreak associated with isoniazid resistance
Cited by: 17
Author(s): Giovanni Satta, Adam A. Witney, Robert J. Shorten, Magdalena Karlikowska, Marc Lipman, Timothy D. McHugh
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12866-018-1327-0

Characterization of Streptococcus pluranimalium from a cattle with mastitis by whole genome sequencing and functional validation
Cited by: 11
Author(s): Yongchu Pan, Haoran An, Tong Fu, Shiyu Zhao, Chengwang Zhang, Genhui Xiao, Jing-Ren Zhang, Xin-Fang Zhao, Gongzheng Hu
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2180-13-106

Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity
Cited by: 34
Author(s): Timothy J. Johnson, Juan E. Abrahante, Samuel S. Hunter, Melissa J. Hauglund, Fred M. Tatum, S. K. Maheswaran, R. E. Briggs
Software Mentions: 1
Published: over 13 years ago

10.1186/s12870-016-0765-9

Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus
Cited by: 45
Author(s): Pibiao Shi, Kateta Malangisha Guy, Weifang Wu, Fang Bingsheng, Jinghua Yang, Mingfang Zhang, Zhongyuan Hu
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2015.00332

Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth
Cited by: 44
Author(s): Christopher R. Beckwith, Marcus J. Edwards, Matthew C. Lawes, Liang Shi, Julea N. Butt, David J. Richardson, Thomas A. Clarke
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2014.00066

An experimental point of view on hydration/solvation in halophilic proteins
Cited by: 30
Author(s): R. Talon, Nicolas Coquelle, Dominique Madern, Éric Girard
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2019.00009

Structural Characterization of the Xi Class Glutathione Transferase From the Haloalkaliphilic Archaeon Natrialba magadii
Cited by: 7
Author(s): Adele Di Matteo, L. Federici, Michele Masulli, Erminia Carletti, Daniele Santorelli, Jennifer Cassidy, Francesca Paradisi, Di Ilio C, Nerino Allocati
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-018-1572-2

Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development
Cited by: 25
Author(s): Lin Chen, Yongxiang Li, Chunhui Li, Yunsu Shi, Yi Song, Dengfeng Zhang, Li Yu, Tianyu Wang
Software Mentions: 1
Published: over 7 years ago

10.3389/fmolb.2018.00103

Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis
Cited by: 4
Author(s): Eduardo Castro‐Torres, Pedro Jiménez‐Sandoval, Eli Fernández-de Gortari, Laura Margarita López-Castillo, Noe Baruch‐Torres, Marisol López-Hidalgo, Antolín Peralta-Castro, Corina Díaz‐Quezada, Rogerio R. Sotelo‐Mundo, Claudia G. Benítez‐Cardoza, L. Michel Espinoza-Fonseca, Adrián Ochoa-Leyva, Luis G. Brieba
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2015.00285

A Cell Biologist’s Field Guide to Aurora Kinase Inhibitors
Cited by: 74
Author(s): Christian O. De Groot, Judy E. Hsia, John V. Anzola, Amir Motamedi, Michelle Yoon, Yao Liang Wong, David Jenkins, Hyun Jae Lee, Mallory B. Martinez, Robert L. Davis, Timothy C. Gahman, Arshad Desai, Andrew K. Shiau
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2229-13-53

A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci
Cited by: 55
Author(s): Luming Yang, Dawei Li, Yuhong Li, Xingfang Gu, Sanwen Huang, Jordi García-Más, Yiqun Weng
Software Mentions: 1
Published: over 13 years ago

10.1186/s12870-021-03194-0

Recent amplification of microsatellite-associated miniature inverted-repeat transposable elements in the pineapple genome
Cited by: 1
Author(s): Lian‐Yu Lin, Anupma Sharma, Qingyi Yu
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12870-016-0859-4

Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress
Cited by: 102
Author(s): Komivi Dossa, Xin Wei, Donghua Li, Daniel Foncéka, Yanxin Zhang, Linhai Wang, Jingyin Yu, Boshou Liao, Diaga Diouf, Ndiaga Cissé
Software Mentions: 1
Published: about 10 years ago

10.1186/s12870-020-02435-y

Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
Cited by: 20
Author(s): Monika Ślipiko, Kamil Myszczyński, Katarzyna Buczkowska, Alina Bączkiewicz, Monika Szczecińska, Jakub Sawicki
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-020-02362-y

Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton
Cited by: 28
Author(s): Limin Lv, Dongyun Zuo, Xingfen Wang, Hongyan Cheng, Youping Zhang, Qiao-lian Wang, Guoli Song, Zhiying Ma
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-018-1519-7

Discovery and annotation of a novel transposable element family in Gossypium
Cited by: 5
Author(s): Hejun Lu, Xinglei Cui, Zhen Liu, Yuling Liu, Xingxing Wang, Zhongli Zhou, Xiaoyan Cai, Zhenmei Zhang, Xuewu Guo, Jinping Hua, Zhiying Ma, Xiyin Wang, Jinfa Zhang, Hong Zhang, Fang Liu, Kunbo Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-020-02740-6

Global analysis of the AP2/ERF gene family in rose (Rosa chinensis) genome unveils the role of RcERF099 in Botrytis resistance
Cited by: 20
Author(s): Dandan Li, Xintong Liu, Li-Zhe Shu, Hua Zhang, Shiya Zhang, Yin Song, Zhao Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/jpm11050388

TMS-EEG Research to Elucidate the Pathophysiological Neural Bases in Patients with Schizophrenia: A Systematic Review
Cited by: 10
Author(s): Xuemei Li, Shiori Honda, Shinichiro Nakajima, Masataka Wada, Kazunari Yoshida, Zafiris J. Daskalakis, Masaru Mimura, Yoshihiro Noda
Software Mentions: 1
Published: over 5 years ago

10.1186/gb-2014-15-2-r27

A single mutation in the GSTe2 gene allows tracking of metabolically based insecticide resistance in a major malaria vector
Cited by: 256
Author(s): Jacob M. Riveron, Cristina Yunta, Sulaiman S. Ibrahim, Rousseau Djouaka, Helen Irving, Benjamin D. Menze, Hanafy M. Ismail, Janet Hemingway, Hilary Ranson, Armando Albert, Charles S. Wondji
Software Mentions: 1
Published: over 12 years ago

10.1016/j.immuni.2020.10.023

Cross-Neutralization of a SARS-CoV-2 Antibody to a Functionally Conserved Site Is Mediated by Avidity
Cited by: 173
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1107/S0021889809023528

Automatic multiple-zone rigid-body refinement with a large convergence radius
Cited by: 50
Author(s): Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Alexandre Urzhumtsev, Paul D. Adams
Software Mentions: 1
Published: about 17 years ago

10.1107/S1600576716004428

<i>DCC</i>: a Swiss army knife for structure factor analysis and validation
Cited by: 21
Author(s): Huanwang Yang, Ezra Peisach, John D. Westbrook, Jasmine Young, Helen M. Berman, S.K. Burley
Software Mentions: 1
Published: over 10 years ago

10.1128/JB.00287-19

A DNA-Binding Protein Tunes Septum Placement during Bacillus subtilis Sporulation
Cited by: 6
Author(s): Emile N. Brown, Allyssa K. Miller, I.V. Krieger, Ryan M. Otto, James C. Sacchettini, Jennifer K. Herman
Software Mentions: 1
Published: about 7 years ago

10.1074/jbc.M113.465963

Base-modified Donor Analogues Reveal Novel Dynamic Features of a Glycosyltransferase
Cited by: 15
Author(s): René Jørgensen, Thomas Pesnot, Ho Jun Lee, Monica M. Palcic, Gerd K. Wagner
Software Mentions: 1
Published: almost 13 years ago

10.1074/jbc.M113.528000

Common Polymorphisms in Human Langerin Change Specificity for Glycan Ligands
Cited by: 49
Author(s): H. Feinberg, T.J.W. Rowntree, S.L.W. Tan, Kurt Drickamer, William I. Weis, Maureen E. Taylor
Software Mentions: 1
Published: over 12 years ago

10.1074/jbc.M113.527994

Crystal Structure and Molecular Imaging of the Nav Channel β3 Subunit Indicates a Trimeric Assembly
Cited by: 65
Author(s): Sivakumar Namadurai, Dilshan Balasuriya, Rajit Rajappa, Martin Wiemhöfer, Katherine Stott, Jürgen Klingauf, J. Michael Edwardson, Dimitri Y. Chirgadze, Antony P. Jackson
Software Mentions: 1
Published: over 12 years ago

10.1074/jbc.M114.547877

The Peptide-binding Cavity Is Essential for Als3-mediated Adhesion of Candida albicans to Human Cells
Cited by: 57
Author(s): Jing Lin, Soo Hee Oh, Rhian Jones, James A. Garnett, Paula S. Salgado, Sophia Rusnakova, Stephen Matthews, Lois L. Hoyer, Ernesto Cota
Software Mentions: 1
Published: about 12 years ago

10.1186/s12870-020-02752-2

Genome-wide identification, phylogenetic and expression pattern analysis of GATA family genes in Brassica napus
Cited by: 25
Author(s): Weizhuo Zhu, Yiyi Guo, Yeke Chen, Dezhi Wu, Lixi Jiang
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.M115.653485

Olfactomedin-1 Has a V-shaped Disulfide-linked Tetrameric Structure
Cited by: 16
Author(s): Matti F. Pronker, Trusanne G. A. A. Bos, Thomas H. Sharp, Dominique M. E. Thies‐Weesie, B.J.C. Janssen
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-019-1957-x

Genome-wide identification and expression analysis of the trihelix transcription factor family in tartary buckwheat (Fagopyrum tataricum)
Cited by: 26
Author(s): Zhaotang Ma, Moyang Liu, Wenjun Sun, Li Huang, Qi Wu, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/1753-6561-6-S6-P17

Mining cancer genomes in COSMIC
Cited by: 1
Author(s): Mingming Jia, Simon Forbes, David Beare, Nidhi Bindal, Prasad Gunasekaran, Kenric Leung, Chai Yin Kok, Sally Bamford, Charlotte G. Cole, Sari Ward, Jon W. Teague, Michael R. Stratton, Peter J. Campbell, Andrew Futreal
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12889-016-3630-8

The double burden of disease among mining workers in Papua, Indonesia: at the crossroads between Old and New health paradigms
Cited by: 15
Author(s): Rodrigo Rodríguez-Fernández, Nawi Ng, Dwidjo Susilo, John Prawira, Michael J. Bangs, Rachel M. Amiya
Software Mentions: 1
Published: almost 10 years ago

10.1186/1756-0500-5-615

CooVar: Co-occurring variant analyzer
Cited by: 35
Author(s): Ismael A. Vergara, Christian Frech, Nansheng Chen
Software Mentions: 1
Published: almost 14 years ago

10.1074/jbc.M115.683268

Structural Insights into the MMACHC-MMADHC Protein Complex Involved in Vitamin B12 Trafficking
Cited by: 29
Author(s): D. Sean Froese, J. Kopec, Fiona Fitzpatrick, M. Schuller, Thomas J. McCorvie, R. Chalk, Tanja Plessl, Victoria Fettelschoss, Brian Fowler, Matthias R. Baumgartner, Wyatt W. Yue
Software Mentions: 1
Published: over 10 years ago

10.1074/jbc.M116.718841

Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System
Cited by: 23
Author(s): Sung-Cheol Koh, Jun Hyun Hwang, Koushik Guchhait, Eun-Gyeong Lee, Sang Yoon Kim, Sujin Kim, Sang‐Min Lee, Jeong Min Chung, Hyun Suk Jung, Sang Jun Lee, Choong‐Min Ryu, Dae-Hee Lee, Tae-Kwang Oh, Ohsuk Kwon, Myung Hee Kim
Software Mentions: 1
Published: over 10 years ago

10.1186/s13062-015-0085-2

Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm
Cited by: 31
Author(s): Aurélia Caputo, Vicky Merhej, Kalliopi Georgiades, Pierre‐Edouard Fournier, Olivier Croce, Caroline Robert, Didier Raoult
Software Mentions: 1
Published: almost 11 years ago

10.1074/jbc.M116.749515

Binding Sites for Acylated Trehalose Analogs of Glycolipid Ligands on an Extended Carbohydrate Recognition Domain of the Macrophage Receptor Mincle
Cited by: 53
Author(s): H. Feinberg, Neela Devi Sing Rambaruth, Sabine A. F. Jégouzo, Kristian M. Jacobsen, Rasmus Djurhuus, Thomas B. Poulsen, William I. Weis, Maureen E. Taylor, Kurt Drickamer
Software Mentions: 1
Published: almost 10 years ago

10.1074/jbc.M117.799080

Mechanism of pathogen recognition by human dectin-2
Cited by: 60
Author(s): H. Feinberg, Sabine A. F. Jégouzo, Maximus J. Rex, Kurt Drickamer, William I. Weis, Maureen E. Taylor
Software Mentions: 1
Published: about 9 years ago

10.1074/jbc.RA118.004604

Complementary recognition of the receptor-binding site of highly pathogenic H5N1 influenza viruses by two human neutralizing antibodies
Cited by: 8
Author(s): Yijun Zuo, Pengfei Wang, Jianfeng Sun, Shichun Guo, Guiqin Wang, Teng Zuo, Shilong Fan, Paul Zhou, Mifang Liang, Xuanling Shi, Xinquan Wang, Linqi Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1186/1757-7241-17-34

Clinician performed resuscitative ultrasonography for the initial evaluation and resuscitation of trauma
Cited by: 57
Author(s): Lawrence M. Gillman, Chad G. Ball, Nova L. Panebianco, Azzam Al-Kadi, Andrew W. Kirkpatrick
Software Mentions: 1
Published: about 17 years ago

10.1186/s12938-019-0740-4

Analyzing brain structural differences associated with categories of blood pressure in adults using empirical kernel mapping-based kernel ELM+
Cited by: 3
Author(s): Xinying Yu, Bo Peng, Zeyu Xue, Hamidreza Saligheh Rad, Zhenlin Cai, Jun Shi, Jianbing Zhu, Yakang Dai
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/9983858

Genome-Wide Identification and Evolutionary Analysis of Argonaute Genes in Hexaploid Bread Wheat
Cited by: 3
Author(s): Yan-Feng Liu, Limin Wang, Zhao Lizi, Wei Wang, Hongxia Zhang
Software Mentions: 1
Published: about 5 years ago

10.1155/2019/2965035

Genome-Wide Identification, Evolution, and Transcriptional Profiling of<i>PP2C</i>Gene Family in<i>Brassica rapa</i>
Cited by: 25
Author(s): Nadeem Khan, Koeun Han, Chunmei Hu, Emal Naseri, Muhammad Salman Haider, Aliya Ayaz, Waleed Amjad Khan, Jianjun Wang, Xilin Hou
Software Mentions: 1
Published: over 7 years ago

10.1016/j.bpj.2015.06.020

Subconductance Gating and Voltage Sensitivity of Sarcoplasmic Reticulum K+ Channels: A Modeling Approach
Cited by: 8
Author(s): Antoni Matyjaszkiewicz, Elisa Venturi, Fiona O’Brien, Tsunaki Iida, Miyuki Nishi, Hiroshi Takeshima, Krasimira Tsaneva-Atanasova, Rebecca Sitsapesan
Software Mentions: 1
Published: about 11 years ago

10.1186/s13068-017-0840-y

Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge
Cited by: 23
Author(s): Casper Wilkens, Peter Kamp Busk, Bo Pilgaard, Wen Jing Zhang, Kåre Lehmann Nielsen, Per Halkjær Nielsen, Lene Lange
Software Mentions: 1
Published: about 9 years ago

10.1074/jbc.RA119.010572

CD23 is a glycan-binding receptor in some mammalian species
Cited by: 11
Author(s): Sabine A. F. Jégouzo, H. Feinberg, Andrew G. Morrison, Angela Holder, Alisha May, Zhiyao Huang, Linghua Jiang, Yi Lasanajak, David F. Smith, Dirk Werling, Kurt Drickamer, William I. Weis, Maureen E. Taylor
Software Mentions: 1
Published: almost 7 years ago

10.1074/jbc.RA120.012444

Pterocarpan synthase (PTS) structures suggest a common quinone methide–stabilizing function in dirigent proteins and proteins with dirigent-like domains
Cited by: 15
Author(s): Meng Qing, Syed G. A. Moinuddin, Sungjin Kim, Diana L. Bedgar, Michael A. Costa, Dennis Thomas, Robert P. Young, Clyde A. Smith, John Cort, Laurence B. Davin, Norman G. Lewis
Software Mentions: 1
Published: about 6 years ago

10.1186/s12935-020-01359-9

Identification of long noncoding RNA RP11-89K21.1 and RP11-357H14.17 as prognostic signature of endometrial carcinoma via integrated bioinformatics analysis
Cited by: 12
Author(s): Lingling Gao, Xin Nie, Wenchao Zhang, Rui Gou, Yuexin Hu, Yue Qi, Xiao Li, Qing Liu, Juanjuan Liu, Bei Lin
Software Mentions: 1
Published: about 6 years ago

10.1074/jbc.RA120.016019

Structural basis of carnitine monooxygenase CntA substrate specificity, inhibition, and intersubunit electron transfer
Cited by: 14
Author(s): Mussa Quareshy, Muralidharan Shanmugam, Eleanor Townsend, Eleanor Jameson, Timothy D. H. Bugg, Alexander D. Cameron, Yin Chen
Software Mentions: 1
Published: over 5 years ago

10.1186/s12936-018-2232-6

Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots
Cited by: 12
Author(s): Sidsel Nag, Poul Erik Kofoed, Johan Ursing, Camilla K. Lemvigh, Rosa Lundbye Allesøe, Amabélia Rodrigues, Christina Aaby Svendsen, Jacob Dyring Jensen, Michael Alifrangis, Ole Lund, Frank Møller Aarestrup
Software Mentions: 1
Published: over 8 years ago

10.1186/s12934-020-01359-4

Comprehensive dissection of dispensable genomic regions in Streptomyces based on comparative analysis approach
Cited by: 10
Author(s): Qing-Ting Bu, Yueping Liu, Huang Xie, Jue Wang, Zi-Yue Li, Xin-Ai Chen, Xu‐Ming Mao, Yongquan Li
Software Mentions: 1
Published: over 6 years ago

10.1264/jsme2.ME18096

Analyses of the Complete Genome Sequence of the Strain &lt;i&gt;Bacillus pumilus&lt;/i&gt; ZB201701 Isolated from Rhizosphere Soil of Maize under Drought and Salt Stress
Cited by: 5
Author(s): Zhongbao Zhang, Yin Li, Xianglong Li, Chun Zhang, Huawen Zou, Cai Liu, Zhongyi Wu
Software Mentions: 1
Published: over 7 years ago

10.1128/MRA.00099-19

Improved Draft Genome Sequence of Bacillus sp. Strain YF23, Which Has Plant Growth-Promoting Activity
Cited by: 0
Author(s): Ye Xia, Seth DeBolt, Qin Ma, Adam McDermaid, Cankun Wang, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides
Software Mentions: 1
Published: over 7 years ago

10.1128/MRA.00232-20

Complete Genome Sequence of a Toxic and Bioactive Exopolysaccharide-Bearing Bacterium, Sulfitobacter sp. Strain AM1-D1
Cited by: 0
Author(s): Xi Yang, Zhiwei Jiang, Zhuang Chen, Jun Dai, Lei Wang, Xiaoling Zhang, Yingjie Qiao
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8020268

Effects of Composting Different Types of Organic Fertilizer on the Microbial Community Structure and Antibiotic Resistance Genes
Cited by: 28
Author(s): Zeming Zhou, Huaiying Yao
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9030648

Genome Sequencing of five Lacticaseibacillus Strains and Analysis of Type I and II Toxin-Antitoxin System Distribution
Cited by: 5
Author(s): Alessia Levante, Camilla Lazzi, Giannis Vatsellas, Dimitris Chatzopoulos, Vasilis S. Dionellis, Periklis Makrythanasis, Erasmo Neviani, Claudia Folli
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8122024

The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Cited by: 20
Author(s): Irena Maus, Tom Jonas Tubbesing, Daniel Wibberg, Robert Heyer, Julia Hassa, Geizecler Tomazetto, Liren Huang, Boyke Bunk, Cathrin Spröer, Dirk Benndorf, Vladimir V. Zverlov, Alfred Pühler, Michael Klocke, Alexander Sczyrba, Andreas Schlüter
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26102862

Screening and Comparison of Lignin Degradation Microbial Consortia from Wooden Antiques
Cited by: 17
Author(s): Wen Zhang, Xueyan Ren, Qiong Lei, Lei Wang
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.015735

Affinity maturation of the RLIP76 Ral binding domain to inform the design of stapled peptides targeting the Ral GTPases
Cited by: 5
Author(s): Catherine Hurd, P. Brear, Jefferson D. Revell, Sarah J. Ross, Helen R. Mott, Darerca Owen
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100262

Conserved binding site in the N-lobe of prokaryotic MATE transporters suggests a role for Na+ in ion-coupled drug efflux
Cited by: 5
Author(s): Steven Castellano, Derek Claxton, Emel Ficici, Tsukasa Kusakizako, Robyn Stix, Wenchang Zhou, Osamu Nureki, Hassane S. Mchaourab, José D. Faráldo-Gómez
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100777

Reduced virulence of the MARTX toxin increases the persistence of outbreak-associated Vibrio vulnificus in host reservoirs
Cited by: 1
Author(s): Sunghee Choi, Byoung Sik Kim, Jun Hyun Hwang, Myung Hee Kim
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100975

Interactions between AMOT PPxY motifs and NEDD4L WW domains function in HIV-1 release
Cited by: 7
Author(s): Lara Rheinemann, Tuscan Thompson, Gaëlle Mercenne, Elliott L. Paine, Francis C. Peterson, Brian F. Volkman, Steven L. Alam, Akram Alian, Wesley I. Sundquist
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jbc.2021.101046

Actinobacillus utilizes a binding protein–dependent ABC transporter to acquire the active form of vitamin B6
Cited by: 5
Author(s): Chuxi Pan, A. Zimmer, Megha Shah, Minh Sang Huynh, Christine Chieh-Lin Lai, Brandon Sit, Yogesh Hooda, David M. Curran, Trevor F. Moraes
Software Mentions: 1
Published: almost 5 years ago

10.1155/2016/6179635

Sulfatide Preserves Insulin Crystals Not by Being Integrated in the Lattice but by Stabilizing Their Surface
Cited by: 7
Author(s): Karsten Buschard, A.W. Bracey, Daniel L. McElroy, Andrew T. Magis, Thomas Østerbye, Mark A. Atkinson, Kate Bailey, Amanda L. Posgai, David A. Ostrov
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1002034

Structural Insights into Viral Determinants of Nematode Mediated Grapevine fanleaf virus Transmission
Cited by: 41
Author(s): Pascale Schellenberger, Claude Sauter, Bernard Lorber, Patrick Bron, Stefano Trapani, Marc Bergdoll, Aurélie Marmonier, Corinne Schmitt-Keichinger, Olivier Lemaire, Gérard Demangeat, Christophe Ritzenthaler
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.ppat.1002162

Structural Basis of Chemokine Sequestration by CrmD, a Poxvirus-Encoded Tumor Necrosis Factor Receptor
Cited by: 34
Author(s): Xiaoguang Xue, Qingyu Lu, Hui Wei, Dongli Wang, Dongwei Chen, Guang‐Jun He, Li Huang, Hanzhong Wang, Xinquan Wang
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.ppat.1002524

Specialized Peptidoglycan Hydrolases Sculpt the Intra-bacterial Niche of Predatory Bdellovibrio and Increase Population Fitness
Cited by: 69
Author(s): Thomas R. Lerner, Andrew L. Lovering, Nhat Khai Bui, Kaoru Uchida, Shin‐Ichi Aizawa, Waldemar Vollmer, R. Elizabeth Sockett
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002528

Structural Insights into a Unique Legionella pneumophila Effector LidA Recognizing Both GDP and GTP Bound Rab1 in Their Active State
Cited by: 46
Author(s): Wei Cheng, Kun Yin, Defen Lu, Bingqing Li, Deyu Zhu, Yuzhen Chen, Hao Zhang, Sujuan Xu, Jijie Chai, Lichuan Gu
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1002633

Loss of Anti-Viral Immunity by Infection with a Virus Encoding a Cross-Reactive Pathogenic Epitope
Cited by: 28
Author(s): Alex T. Chen, Markus Cornberg, Stéphanie Gras, Carole Guillonneau, Jamie Rossjohn, Andrew Trees, Sébastien Emonet, Juan Carlos de la Torre, Raymond M. Welsh, Liisa K. Selin
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.ppat.1003121

A Pathogen Type III Effector with a Novel E3 Ubiquitin Ligase Architecture
Cited by: 78
Author(s): A.U. Singer, Sebastian Schulze, T. Skarina, Xiaohui Xu, Hong Cui, Lennart Eschen‐Lippold, Monique Egler, Tharan Srikumar, Brian Raught, Justin Lee, Dierk Scheel, Alexei Savchenko, Ulla Bonas
Software Mentions: 1
Published: over 13 years ago

10.1002/mnfr.201500435

Systematic analysis of the polyphenol metabolome using the Phenol‐Explorer database
Cited by: 66
Author(s): Joseph A. Rothwell, Mireia Urpí-Sardà, María Boto‐Ordóñez, Rafaël Llorach, Andreu Farran‐Codina, Dinesh Kumar Barupal, Vanessa Neveu, Claudine Manach, Cristina Andrés‐Lacueva, Augustin Scalbert
Software Mentions: 1
Published: almost 11 years ago

10.1177/1744806919860323

Correlation of miRNA expression with intensity of neuropathic pain in man
Cited by: 13
Author(s): Diana Tavares‐Ferreira, Nathan Lawless, Emma V. Bird, Simon Atkins, David A. Collier, Emanuele Sher, Karim Malki, D Lambert, Fiona M. Boissonade
Software Mentions: 1
Published: over 7 years ago

10.1038/s41380-018-0313-0

Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci
Cited by: 71
Author(s): A. Mesut Erzurumluoglu, Mengzhen Liu, Victoria E. Jackson, Daniel R. Barnes, Gargi Datta, Carl Melbourne, Robin Young, Chiara Batini, Praveen Surendran, Tao Jiang, Sheikh Daud Adnan, Saima Afaq, Arpana Agrawal, Elisabeth Altmaier, Antonis C. Antoniou, Folkert W. Asselbergs, Clemens Baumbach, Laura J. Bierut, Sarah Bertelsen, Michael Boehnke, Michiel L. Bots, David M. Brazel, John C. Chambers, Jenny Chang–Claude, Chu Chen, Janie Corley, Yi‐Ling Chou, Sean P. David, Rudolf A. de Boer, Christiaan A. de Leeuw, Joe Dennis, Anna F. Dominiczak, Alison M. Dunning, Douglas F. Easton, Charles B. Eaton, Paul Elliott, Εvangelos Εvangelou, Jessica D. Faul, Tatiana Foroud, Alison Goate, Jian Gong, Hans J. Grabe, Jeff Haessler, Christopher A. Haiman, Göran Hallmans, Anke R. Hammerschlag, Sarah E. Harris, Andrew T. Hattersley, Andrew C. Heath, Chris Hsu, William G. Iacono, Stavroula Kanoni, Manav Kapoor, Jaakko Kaprio, Sharon L.R. Kardia, Fredrik Karpe, Jukka Kontto, Jaspal S. Kooner, Charles Kooperberg, Kari Kuulasmaa, Markku Laakso, Dongbing Lai, Claudia Langenberg, Nhung Le, Guillaume Lettre, Anu Loukola, Jian’an Luan, Pamela A. F. Madden, Massimo Mangino, Riccardo E. Marioni, Eirini Marouli, Jonathan Marten, Nicholas G. Martin, Matt McGue, Kyriaki Michailidou, Evelin Mihailov, Alireza Moayyeri, Marie Moitry, Martina Müller‐Nurasyid, Aliya Naheed, Matthias Nauck, Matthew J. Neville, Sune F. Nielsen, Kari E. North, Markus Perola, Paul D.P. Pharoah, Giorgio Pistis, Tinca J. C. Polderman, Daniëlle Posthuma, Neil Poulter, Beenish Qaiser, Awais Rasheed, Alex P. Reiner, Frida Renström, John P. Rice, Rebecca Rohde, Olov Rolandsson, Nilesh J. Samani, Maria Samuel, David Schlessinger, Steven Scholte, Robert A. Scott, Peter Sever, Yaming Shao, Nick Shrine, Jennifer A. Smith, John M. Starr, Kathleen Stirrups, Danielle Stram, Heather M. Stringham, Ioanna Tachmazidou, Jean‐Claude Tardif, Deborah J. Thompson, Hilary A. Tindle, Vinicius Tragante, Stella Trompet, Valérie Turcot, Jessica Tyrrell, Ilonca Vaartjes, Andries R. van der Leij, Peter van der Meer, Tibor V. Varga, Niek Verweij, Henry Völzke, Nicholas J. Wareham, Helen R. Warren, David R. Weir, Stefan Weiß, Leah Wetherill, Hanieh Yaghootkar, Ersin Yavas, Yu Jiang, Fang Chen, Xiaowei Zhan, Weihua Zhang, Wei Zhao, Wei Zhao, Kaixin Zhou, Philippe Amouyel, Stefan Blankenberg, Mark J. Caulfield, Rajiv Chowdhury, Francesco Cucca, Ian J. Deary, Panos Deloukas, Emanuele Di Angelantonio, Marco Ferrario, Jean Ferrières, Paul W. Franks, Tim Frayling, Philippe Frossard, Ian P. Hall, Caroline Hayward, Jan‐Håkan Jansson, J. Wouter Jukema, Frank Kee, Satu Männistö, Andres Metspalu, Patricia B. Munroe, Børge G. Nordestgaard, Colin N.A. Palmer, Veikko Salomaa, Naveed Sattar, Timothy D. Spector, David P. Strachan, Pim van der Harst, Eleftheria Zeggini, Danish Saleheen, Adam S. Butterworth, Louise V. Wain, Gonçalo R. Abecasis, John Danesh, Martin D. Tobin, Scott Vrieze, Dajiang Liu, Joanna M. M. Howson
Software Mentions: 1
Published: over 7 years ago

10.1038/msb.2013.41

Generalized bacterial genome editing using mobile group II introns and Cre‐<i>lox</i>
Cited by: 70
Author(s): Peter J. Enyeart, Steven M. Chirieleison, Mai N. Dao, Jiřı́ Perůtka, Erik M. Quandt, Jun Yao, Jacob T Whitt, Adrian T. Keatinge‐Clay, Alan M. Lambowitz, Andrew D. Ellington
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003690

Structure of a Bimodular Botulinum Neurotoxin Complex Provides Insights into Its Oral Toxicity
Cited by: 98
Author(s): Kwangkook Lee, Shenyan Gu, Lei Jin, Thi Tuc Nghi Le, Luisa W. Cheng, Jasmin Strotmeier, Anna Magdalena Kruel, Guorui Yao, Kay Perry, Andreas Rummel, Rongsheng Jin
Software Mentions: 1
Published: almost 13 years ago

10.1063/1.5130582

Conformational sampling and kinetics changes across a non-Arrhenius break point in the enzyme thermolysin
Cited by: 3
Author(s): Ming Dong, Mackenzie L. Lauro, Timothy J. Koblish, Brian J. Bahnson
Software Mentions: 1
Published: over 6 years ago

10.1016/j.str.2012.08.011

The CDK9 Tail Determines the Reaction Pathway of Positive Transcription Elongation Factor b
Cited by: 31
Author(s): Sonja Baumli, A.J. Hole, Lan-Zhen Wang, M.E.M. Noble, Jane Endicott
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.str.2015.01.014

Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases
Cited by: 29
Author(s): Shoichiro Horita, John S. Scotti, Cyrille C. Thinnes, Yousef S. Mottaghi-Taromsari, Armin Thalhammer, Wei Ge, W.S. Aik, Christoph Loenarz, Christopher J. Schofield, M.A. McDonough
Software Mentions: 1
Published: over 11 years ago

10.1016/j.str.2019.06.005

Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase
Cited by: 18
Author(s): Zhuoyao Chen, S. Picaud, P. Filippakopoulos, Vincenzo D’Angiolella, Alex N. Bullock
Software Mentions: 1
Published: almost 7 years ago

10.3390/toxins10030108

Structural Basis for the Specific Neutralization of Stx2a with a Camelid Single Domain Antibody Fragment
Cited by: 18
Author(s): Robert Alvin Bernedo-Navarro, Ema Romão, Tomomasa Yano, Joar Pinto, Henri De Greve, Yann G.J. Sterckx, Serge Muyldermans
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins12100616

Two VHH Antibodies Neutralize Botulinum Neurotoxin E1 by Blocking Its Membrane Translocation in Host Cells
Cited by: 5
Author(s): Kwok Ho Lam, Kay Perry, Charles B. Shoemaker, Rongsheng Jin
Software Mentions: 1
Published: almost 6 years ago

10.1101/2020.08.02.233536

Cross-neutralization of a SARS-CoV-2 antibody to a functionally conserved site is mediated by avidity
Cited by: 13
Author(s): Hejun Liu, Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Jonathan L. Torres, Tom G. Caniels, Jelle van Schooten, Xueyong Zhu, Chang-Chun David Lee, Philip J.M. Brouwer, Marit J. van Gils, Rogier W. Sanders, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: about 6 years ago

10.1101/2021.04.01.437942

Ultrapotent bispecific antibodies neutralize emerging SARS-CoV-2 variants
Cited by: 6
Author(s): Hyeseon Cho, Kristina Kay Gonzales-Wartz, Deli Huang, Meng Yuan, Mary Peterson, Janie Liang, Nathan Beutler, Jonathan L. Torres, Cong Yu, Elena Postnikova, Sandhya Bangaru, Chloe Adrienna Talana, Wei Shi, Eun Sung Yang, Yi Zhang, Kwanyee Leung, Lingshu Wang, Linghang Peng, Jeff Skinner, Shanping Li, Nicholas C. Wu, Hejun Liu, Cherrelle Dacon, Thomas P. Moyer, Melanie Cohen, Ming Zhao, F. Eun-Hyung Lee, Rona Singer Weinberg, Iyadh Douagi, Robin Gross, Connie S. Schmaljohn, Amarendra Pegu, John R. Mascola, Michael R. Holbrook, David Nemazee, Thomas F. Rogers, Andrew B. Ward, Ian A. Wilson, Peter D. Crompton, Joshua Tan
Software Mentions: 1
Published: over 5 years ago