10.1093/genetics/iyab027

How sequence populations persist inside bacterial genomes
Cited by: 8
Author(s): Hye Jin Park, Chaitanya S. Gokhale, Frederic Bertels
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0100253

Identification of Novel Surface-Exposed Proteins of Rickettsia rickettsii by Affinity Purification and Proteomics
Cited by: 22
Author(s): Wenping Gong, Xiaolu Xiong, Yong Qi, Jun Jiao, Changsong Duan, Bin Wen
Software Mentions: 1
Published: about 12 years ago

10.1098/rsos.180076

Molecular mechanism of viscoelastic polymer enhanced oil recovery in nanopores
Cited by: 27
Author(s): JingCun Fan, FengChao Wang, Jie Chen, YinBo Zhu, Detang Lu, He Liu, Heng An Wu
Software Mentions: 1
Published: about 8 years ago

10.1098/rsos.191046

Slip-spring simulations of different constraint release environments for linear polymer chains
Cited by: 4
Author(s): Teng Ma, Guochang Lin, Huifeng Tan
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph17155596

COVID-WAREHOUSE: A Data Warehouse of Italian COVID-19, Pollution, and Climate Data
Cited by: 23
Author(s): Giuseppe Agapito, Chiara Zucco, Mario Cannataro
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2015.00282

Accuracy of prediction of infarct-related arrhythmic circuits from image-based models reconstructed from low and high resolution MRI
Cited by: 47
Author(s): Dongdong Deng, Hermenegild Arevalo, Farhad Pashakhanloo, Adityo Prakosa, Hiroshi Ashikaga, Elliot R. McVeigh, Henry R. Halperin, Natalia A. Trayanova
Software Mentions: 1
Published: almost 11 years ago

10.1186/1741-7007-3-21

Human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalization
Cited by: 48
Author(s): Emmanuel G. Reynaud, Miguel Ángel Gutiérrez Andrade, Fabien Bonneau, Thi Bach Nga Ly, Michael Knop, Klaus Scheffzek, Rainer Pepperkok
Software Mentions: 1
Published: almost 21 years ago

10.1186/1471-2458-14-665

Pandemic preparedness: perceptions of vulnerable migrants in Thailand towards WHO-recommended non-pharmaceutical interventions: a cross-sectional study
Cited by: 6
Author(s): Jason Hickey, Anita J. Gagnon, Nigoon Jitthai
Software Mentions: 1
Published: about 12 years ago

10.1186/s13068-019-1432-9

AmyZ1: a novel α-amylase from marine bacterium Pontibacillus sp. ZY with high activity toward raw starches
Cited by: 30
Author(s): Wei Fang, Saisai Xue, Pengjun Deng, Xuecheng Zhang, Xiaotang Wang, Yazhong Xiao, Zemin Fang
Software Mentions: 1
Published: over 7 years ago

10.3390/plants10091805

Genome-Wide Identification and Analysis of the MADS-Box Gene Family in American Beautyberry (Callicarpa americana)
Cited by: 6
Author(s): Tareq Alhindi, Ayed Al‐Abdallat
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pntd.0002594

An Insight into the Transcriptome of the Digestive Tract of the Bloodsucking Bug, Rhodnius prolixus
Cited by: 163
Author(s): José M. C. Ribeiro, Fernando Ariel Genta, Marcos Henrique Ferreira Sorgine, Raquel Logullo, Rafael D. Mesquita, Gabriela O. Paiva-Silva, David Majerowicz, Marcelo N. Medeiros, Leonardo B. Koerich, Walter R. Terra, Clélia Ferreira, André C. Pimentel, Paulo Mascarello Bisch, Daniel C. Leite, Michelle M. P. Diniz, João Lídio da S. G. V., Manuela L. da Silva, Ricardo Nascimento Araújo, Ana Caroline P. Gandara, Sébastien Brosson, Didier Salmon, Sabrina Bousbata, Natalia González-Caballero, Ariel Mariano Silber, Michèle Auger, Kátia C. Gondim, Mário A.C. Silva-Neto, Geórgia C. Atella, Helena Araujo, Felipe A. Dias, Carla Polycarpo, Raquel J. Vionette-Amaral, Patrı́cia Fampa, Ana C.A. Melo, Aparecida S. Tanaka, Carsten Balczun, José Henrique M. Oliveira, Renata L.S. Gonçalves, Cristiano Lazoski, Rolando Rivera‐Pomar, Luis Diambra, Günter A. Schaub, Elói S. Garcia, Patrı́cia Azambuja, Glória R.C. Braz, Pedro L. Oliveira
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0090755

Hope for Restoration of Dead Valuable Bulls through Cloning Using Donor Somatic Cells Isolated from Cryopreserved Semen
Cited by: 56
Author(s): Naresh L. Selokar, Monika Saini, P. Palta, M. S. Chauhan, R. S. Manik, S. K. Singla
Software Mentions: 1
Published: over 12 years ago

10.7759/cureus.15062

Comparison of Effect of Nebivolol and Bisoprolol on Sexual Function of Hypertensive Female Patients
Cited by: 1
Author(s): Nomesh Kumar, Shayan Iqbal Khan, Fnu Versha, Ishan Garg, Parkash Bachani, Ambresha Gul, Maha Jahangir, Haya Khalid, Sidrah Khan, Sidra Memon
Software Mentions: 1
Published: over 5 years ago

10.1590/2177-6709.26.1.e2119248.oar

Effectiveness of three different types of educational methods on implementation of proper oral hygiene behaviour prior to orthodontic treatment
Cited by: 1
Author(s): Fethiye Çakmak Özlü, Erol Aktunç, Hakan Yılmaz, Ersan İlsay Karadeniz
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02985

Identification and Characterization of a Novel Basic Helix-Loop-Helix Transcription Factor of Phospholipid Synthesis Regulation in Aspergillus niger
Cited by: 3
Author(s): Hongzhi Dong, Di Yu, Bin Wang, Li Pan
Software Mentions: 1
Published: over 6 years ago

10.1007/s12529-020-09864-x

Influence of a Planning Intervention on Physical Activity Behavior: the Moderating Role of Intentions and Executive Functions in a Randomized Controlled Trial
Cited by: 8
Author(s): Ines Pfeffer, Tilo Strobach
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/4149103

A Composite Model of Wound Segmentation Based on Traditional Methods and Deep Neural Networks
Cited by: 36
Author(s): Fangzhao Li, Changjian Wang, Xiaohui Liu, Yuxing Peng, Shiyao Jin
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2021.106790

Two gas metal arc welding process dataset of arc parameters and input parameters
Cited by: 2
Author(s): Rogfel Thompson Martínez, Guillermo Alvarez Bestard, Sadek Crisóstomo Absi Alfaro
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-73126-9

DDxNet: a deep learning model for automatic interpretation of electronic health records, electrocardiograms and electroencephalograms
Cited by: 11
Author(s): Jayaraman J. Thiagarajan, Deepta Rajan, Sameeksha Katoch, Andreas Spanias
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13321-017-0190-6

A metadata-driven approach to data repository design
Cited by: 17
Author(s): Matthew Harvey, Andrew McLean, Rzepa Henry S.
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-9-419

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Cited by: 43
Author(s): Sheila Podell, Terry Gaasterland, Eric E. Allen
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2164-9-217

Biocomputational prediction of small non-coding RNAs in Streptomyces
Cited by: 61
Author(s): Josef Pánek, Jan Bobek, Karel Mikulı́k, Marek Basler, Jiřı́ Vohradský
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2180-10-37

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales
Cited by: 82
Author(s): Fabíola Marques de Carvalho, Rangel Celso Souza, Fernando Gomes Barcellos, Mariangela Hungría, Ana Tereza Ribeiro de Vasconcelos
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2180-8-99

A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes
Cited by: 41
Author(s): Young-Su Seo, Malinee Sriariyanun, Li Wang, Janice Pfeiff, Jirapa Phetsom, Lin Ye, Ki‐Hong Jung, Hui Hsien Chou, Adam J. Bogdanove, Pamela C. Ronald
Software Mentions: 1
Published: about 18 years ago

10.1186/s12917-019-2204-2

High levels of unreported intraspecific diversity among RNA viruses in faeces of neonatal piglets with diarrhoea
Cited by: 17
Author(s): Martı́ Cortey, Iván Díaz, Àlvar Martínez Vidal, Gerard Martín‐Valls, Giovanni Franzo, Pedro J. G. de Nova, Laila Darwich, Héctor Puente, Ana Carvajal, M. Martín, Enric Mateu
Software Mentions: 1
Published: over 6 years ago

10.1186/1475-2859-12-30

New insights on the reorganization of gene transcription in Pseudomonas putida KT2440 at elevated pressure
Cited by: 34
Author(s): Stéphanie Follonier, Isabel F. Escapa, Pilar Fonseca, Bernhard Henes, Sven Panke, Manfred Zinn, M. Prieto
Software Mentions: 1
Published: over 13 years ago

10.1099/mgen.0.000151

Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR)
Cited by: 39
Author(s): James A. Robertson, Catherine Yoshida, Peter Kruczkiewicz, Céline Nadon, Anil Nichani, Eduardo N. Taboada, John H. E. Nash
Software Mentions: 1
Published: over 8 years ago

10.1186/s13071-015-1176-8

A cecropin-like antimicrobial peptide with anti-inflammatory activity from the black fly salivary glands
Cited by: 26
Author(s): Jing Wu, Lingli Mu, Zhuang Li, Yamei Han, Tong Liu, Jun Li, Yadong Yuan, Hailong Yang, Wei Lin
Software Mentions: 1
Published: almost 11 years ago

10.3390/pharmaceutics11030119

Computational Approaches in Theranostics: Mining and Predicting Cancer Data
Cited by: 18
Author(s): Tânia F.G.G. Cova, Daniel Jorge Silva Bento, Sandra C.C. Nunes
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1003849

A Reappraisal of How to Build Modular, Reusable Models of Biological Systems
Cited by: 46
Author(s): Maxwell Lewis Neal, Michael T. Cooling, Lucian P. Smith, Christopher T. Thompson, Herbert M. Sauro, Brian E. Carlson, Daniel L. Cook, John H. Gennari
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1002492

Inference of Genotype–Phenotype Relationships in the Antigenic Evolution of Human Influenza A (H3N2) Viruses
Cited by: 26
Author(s): Lars Steinbrück, Alice C. McHardy
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0127108

Analysis of Human RSV Immunity at the Molecular Level: Learning from the Past and Present
Cited by: 3
Author(s): Kerrie Vaughan, Julia Ponomarenko, Bjoern Peters, Alessandro Sette
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0145124

Novel Genes Affecting the Interaction between the Cabbage Whitefly and Arabidopsis Uncovered by Genome-Wide Association Mapping
Cited by: 11
Author(s): Colette Broekgaarden, Johan Bucher, Johanna A. Bac-Molenaar, Joost J. B. Keurentjes, Willem Kruijer, Roeland E. Voorrips, Ben Vosman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0086309

Integrative Gene Network Construction to Analyze Cancer Recurrence Using Semi-Supervised Learning
Cited by: 46
Author(s): Chihyun Park, Jaegyoon Ahn, Hyun‐Jin Kim, Sang‐Hyun Park
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0075601

New Pyrazolopyrimidine Inhibitors of Protein Kinase D as Potent Anticancer Agents for Prostate Cancer Cells
Cited by: 28
Author(s): Manuj Tandon, J. Karl Johnson, Zhihong Li, Shaohua Xu, Peter Wipf, Qiming J. Wang
Software Mentions: 1
Published: almost 13 years ago

10.1007/s00259-016-3382-9

Nephrotoxicity after PRRT with 177Lu-DOTA-octreotate
Cited by: 122
Author(s): Hendrik Bergsma, Mark Konijnenberg, Wouter A. van der Zwan, Boen L.R. Kam, Jaap J.M. Teunissen, P. P. M. Kooij, Katya Mauff, Eric P. Krenning, Dik J. Kwekkeboom
Software Mentions: 1
Published: over 10 years ago

10.1002/2211-5463.12849

LCK expression is a potential biomarker for distinguishing primary central nervous system lymphoma from glioblastoma multiforme
Cited by: 2
Author(s): Le Ge, Lixia Xu, Shan Lu, Hua Yan
Software Mentions: 1
Published: over 6 years ago

10.3389/fmolb.2020.589435

Proteome of the Triatomine Digestive Tract: From Catalytic to Immune Pathways; Focusing on Annexin Expression
Cited by: 8
Author(s): Márcia Gumiel, Débora P Mattos, Cecília Stahl Vieira, Caroline S. Moraes, Carlos José de Carvalho Moreira, Marcelo S. Gonzalez, André Teixeira-Ferreira, Mariana Caldas Waghabi, Patrı́cia Azambuja, Nicolas Carels
Software Mentions: 1
Published: over 5 years ago

10.1128/genomeA.01472-17

Completed Genome Sequences of Strains from 36 Serotypes of Salmonella
Cited by: 1
Author(s): James A. Robertson, Catherine Yoshida, Simone Gurnik, John H. E. Nash
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007375

An anti-Gn glycoprotein antibody from a convalescent patient potently inhibits the infection of severe fever with thrombocytopenia syndrome virus
Cited by: 36
Author(s): Ki–Hyun Kim, Jinhee Kim, Meehyun Ko, June Young Chun, Hyori Kim, Seungtaek Kim, Ji Young Min, Sang-Won Park, Myoung Don Oh, Junho Chung
Software Mentions: 1
Published: over 7 years ago

10.1186/1477-5956-6-18

Identification of differentially expressed proteins in spontaneous thymic lymphomas from knockout mice with deletion of p53
Cited by: 13
Author(s): Bent Honoré, Søren Buus, Mogens H. Claësson
Software Mentions: 1
Published: over 18 years ago

10.1038/s41598-018-35149-1

Gene prioritization, communality analysis, networking and metabolic integrated pathway to better understand breast cancer pathogenesis
Cited by: 24
Author(s): Andrés López‐Cortés, César Paz‐y‐Miño, Alejandro Cabrera-Andrade, Stephen J. Barigye, Cristian R. Munteanu, Humberto González-Dı́az, Alejandro Pazos, Yunierkis Pérez-Castillo, Eduardo Tejera
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms13067109

Structural Analysis of Hypothetical Proteins from Helicobacter pylori: An Approach to Estimate Functions of Unknown or Hypothetical Proteins
Cited by: 15
Author(s): Sung Jean Park, Woo Sung Son, Bong-Jin Lee
Software Mentions: 1
Published: about 14 years ago

10.1186/s13104-017-2719-1

Changes in DNA methylation in naïve T helper cells regulate the pathophysiological state in minimal-change nephrotic syndrome
Cited by: 2
Author(s): Yasuko Kobayashi, Akira Aizawa, Takumi Takizawa, Katsuhide Igarashi, Izuho Hatada, Hirokazu Arakawa
Software Mentions: 1
Published: almost 9 years ago

10.1080/21505594.2019.1624102

Three new serine-protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) from extra-intestinal pathogenic <i>Escherichia coli</i> and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney
Cited by: 20
Author(s): Hajer Habouria, Pravil Pokharel, Ségolène Maris, Amélie Garénaux, Hicham Bessaiah, Sébastien Houle, Frédéric J. Veyrier, Stéphanie Guyomard-Rabenirina, Antoine Talarmin, Charles M. Dozois
Software Mentions: 1
Published: over 7 years ago

10.1080/21505594.2020.1855923

SarA plays a predominant role in controlling the production of extracellular proteases in the diverse clinical isolates of <i>Staphylococcus aureus</i> LAC and UAMS-1
Cited by: 11
Author(s): Aura M Ramirez, Karen E. Beenken, Stephanie D. Byrum, Alan J. Tackett, Lindsey N. Shaw, Brittney D. Gimza, Mark S. Smeltzer
Software Mentions: 1
Published: over 5 years ago

10.3390/v6020727

Identification by Mass Spectrometry and Immune Response Analysis of Guinea Pig Cytomegalovirus (GPCMV) Pentameric Complex Proteins GP129, 131 and 133
Cited by: 10
Author(s): Josephine S. Gnanandarajah, Peter A. Gillis, Nelmary Hernandez-Alvarado, LeeAnn Higgins, Todd W. Markowski, Heungsup Sung, Sheila F Lumley, Mark R. Schleiss
Software Mentions: 1
Published: over 12 years ago

10.3390/v7062754

The Chikungunya Virus Capsid Protein Contains Linear B Cell Epitopes in the N- and C-Terminal Regions that are Dependent on an Intact C-Terminus for Antibody Recognition
Cited by: 13
Author(s): Lucas Y. H. Goh, Jody Hobson‐Peters, Natalie A. Prow, K C Baker, Thisun B. H. Piyasena, Carmel Taylor, Ashok Rana, Marcus L. Hastie, Jeff J. Gorman, Roy A. Hall
Software Mentions: 1
Published: about 11 years ago

10.3390/v7062758

A Thermophilic Phage Endolysin Fusion to a Clostridium perfringens-Specific Cell Wall Binding Domain Creates an Anti-Clostridium Antimicrobial with Improved Thermostability
Cited by: 47
Author(s): Steven M. Swift, Bruce S. Seal, Johnna K. Garrish, Brian B. Oakley, Kelli L. Hiett, Hung‐Yueh Yeh, Rebekah Woolsey, Kathleen M. Schegg, J. Eric Line, David M. Donovan
Software Mentions: 1
Published: about 11 years ago

10.3390/v9030049

Viral Protein Kinetics of Piscine Orthoreovirus Infection in Atlantic Salmon Blood Cells
Cited by: 32
Author(s): Hanne Merethe Haatveit, Øystein Wessel, Turhan Markussen, Morten Lund, Bernd Thiede, Ingvild Berg Nyman, Stine Braaen, Maria K. Dahle, Espen Rimstad
Software Mentions: 1
Published: over 9 years ago

10.3390/v12030294

Structures of Three Actinobacteriophage Capsids: Roles of Symmetry and Accessory Proteins
Cited by: 11
Author(s): Podgorski JM, Joshua Calabrese, Lauren Alexandrescu, Deborah Jacobs-Sera, Welkin H. Pope, Graham F. Hatfull, Simon White
Software Mentions: 1
Published: over 6 years ago

10.3390/v13030377

The Alphaviral Capsid Protein Inhibits IRAK1-Dependent TLR Signaling
Cited by: 3
Author(s): V Douglas Landers, Daniel W. Wilkey, Michael L. Merchant, Thomas C. Mitchell, Kevin J. Sokoloski
Software Mentions: 1
Published: over 5 years ago

10.3390/v13061038

RuvB-Like Protein 2 Interacts with the NS1 Protein of Influenza A Virus and Affects Apoptosis That Is Counterbalanced by Type I Interferons
Cited by: 0
Author(s): Yimeng Wang, Jianhong Zhou, Samuel G. Mackintosh, Yong Du
Software Mentions: 1
Published: about 5 years ago

10.1186/1477-7819-12-371

RAB8A a new biomarker for endometrial cancer?
Cited by: 6
Author(s): Yachun Bie, Zhenyu Zhang
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-3305-5-140

First analysis of the secretome of the canine heartworm, Dirofilaria immitis
Cited by: 39
Author(s): James Geary, Mohamed Satti, Yovany Moreno, Nicole J. Madrill, Doug Whitten, Selwyn Arlington Headley, Dalen Agnew, Timothy G. Geary, Charles D. Mackenzie
Software Mentions: 1
Published: about 14 years ago

10.1186/s13071-017-2077-9

Immune recognition of salivary proteins from the cattle tick Rhipicephalus microplus differs according to the genotype of the bovine host
Cited by: 13
Author(s): Gustavo García, Sandra Regina Maruyama, Kristina Nelson, José M. C. Ribeiro, Luiz Gustavo Gardinassi, Antônio Augusto Mendes Maia, Beatriz Rossetti Ferreira, F.N.J. Kooyman, Isabel Kinney Ferreira de Miranda Santos
Software Mentions: 1
Published: over 9 years ago

10.1186/s13071-015-1016-x

Anopheles stephensi p38 MAPK signaling regulates innate immunity and bioenergetics during Plasmodium falciparum infection
Cited by: 16
Author(s): Bo Wang, Nazzy Pakpour, Eleonora Napoli, Anna Drexler, Elizabeth K.K. Glennon, Win Surachetpong, Kong Wai Cheung, Alicia Álvarez Aguirre, John M. Klyver, Edwin E. Lewis, Richard A. Eigenheer, Brett S. Phinney, Cecilia R Giulivi, Shirley Luckhart
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13071-016-1298-7

Identification of repressive and active epigenetic marks and nuclear bodies in Entamoeba histolytica
Cited by: 8
Author(s): Daniela Lozano-Amado, Abril Marcela Herrera‐Solorio, Jesús Valdés, Leticia Alemán-Lazarini, Ma. de Jesús Almaráz-Barrera, Eva Luna-Rivera, Miguel Vargas, Rosaura Hernández‐Rivas
Software Mentions: 1
Published: over 10 years ago

10.3390/pathogens5020040

Comparison of Surface Proteomes of Adherence Variants of Listeria Monocytogenes Using LC-MS/MS for Identification of Potential Surface Adhesins
Cited by: 9
Author(s): Hung King Tiong, Steven D. Hartson, Peter M. Muriana
Software Mentions: 1
Published: over 10 years ago

10.1186/s12969-017-0220-y

Homocysteine, folate, hs-C-reactive protein, tumor necrosis factor alpha and inflammatory proteins: are these biomarkers related to nutritional status and cardiovascular risk in childhood-onset systemic lupus erythematosus?
Cited by: 11
Author(s): Roberta Garcia Salomão, Luciana Martins de Carvalho, Clarice Izumi, Érika Silva Czernisz, José César Rosa, Sonir Roberto Rauber Antonini, Ana Carolina Bueno, Maria Olímpia Ribeiro do Vale Almada, Carolina de Almeida Coelho‐Landell, Alceu Afonso Jordão, Virgínia Paes Leme Ferriani, Jacqueline Pontes Monteiro
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.754

Amyloid domains in the cell nucleus controlled by nucleoskeletal protein lamin B1 reveal a new pathway of mercury neurotoxicity
Cited by: 15
Author(s): Florian Arnhold, Karl‐Heinz Gührs, Anna von Mikecz
Software Mentions: 1
Published: over 11 years ago

10.7717/peerj.2007

Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and<i>β</i>-1, 3-glucanases as key players in grapevine defense against<i>Xylella fastidiosa</i>
Cited by: 13
Author(s): Sandeep Chakraborty, Rafael Nascimento, Paulo A. Zaini, Hossein Gouran, Basuthkar J. Rao, Luiz Ricardo Goulart, Abhaya M. Dandekar
Software Mentions: 1
Published: about 10 years ago

10.7717/peerj.2911

Species-specific pharmacology of maximakinin, an amphibian homologue of bradykinin: putative prodrug activity at the human B2receptor and peptidase resistance in rats
Cited by: 5
Author(s): Xavier Charest‐Morin, Hélène Bachelard, Mélissa Jean, François Marceau
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.4510

Proteomic identification of galectin-11 and 14 ligands from<i>Haemonchus contortus</i>
Cited by: 7
Author(s): Dhanasekaran Sakthivel, Jaclyn Swan, Sarah Preston, Shakif-Azam, Pierre Faou, Yaqing Jiao, Rachael Downs, Harinda Rajapaksha, Robin B. Gasser, David Piedrafita, Travis Beddoe
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.813

Effects of anesthetics pentobarbital sodium and chloral hydrate on urine proteome
Cited by: 10
Author(s): Mindi Zhao, Xundou Li, Menglin Li, Youhe Gao
Software Mentions: 1
Published: over 11 years ago

10.3390/pharmaceutics13091392

Proteomics-Based Retinal Target Engagement Analysis and Retina-Targeted Delivery of 17β-Estradiol by the DHED Prodrug for Ocular Neurotherapy in Males
Cited by: 4
Author(s): Katalin Prókai-Tátrai, Khadiza Zaman, Vien Nguyen, Daniel L. De La Cruz, László Prókai
Software Mentions: 1
Published: almost 5 years ago

10.3390/pharmaceutics12020101

17β-Estradiol Delivered in Eye Drops: Evidence of Impact on Protein Networks and Associated Biological Processes in the Rat Retina through Quantitative Proteomics
Cited by: 6
Author(s): László Prókai, Khadiza Zaman, Vien Nguyen, Katalin Prókai-Tátrai
Software Mentions: 1
Published: over 6 years ago

10.14814/phy2.12116

The exocyst and regulatory GTPases in urinary exosomes
Cited by: 24
Author(s): Maria F. Chacon-Heszele, Soo Young Choi, Xiaofeng Zuo, Jeong‐In Baek, Chris W. Ward, Joshua H. Lipschutz
Software Mentions: 1
Published: about 12 years ago

10.14814/phy2.14731

Profiling plasma‐extracellular vesicle proteins and microRNAs in diabetes onset in middle‐aged male participants in the ELSA‐Brasil study
Cited by: 8
Author(s): Laureane Nunes Masi, Paulo A Lotufo, Frederico Moraes Ferreira, Alice Cristina Rodrigues, Tamires Duarte Afonso Serdan, Talita Souza‐Siqueira, Aécio Assunção Braga, Magda Elizabeth Graciano Saldarriaga, Tatiana Carolina Alba-Loureiro, Fernanda Teixeira Borges, Diego Pulzatto Cury, Mário Hiroyuki Hirata, Renata Gorjão, Tania C. Pithon‐Curi, Simão Augusto Lottenberg, Ligia Maria Giongo Fedeli, Helder Takashi Imoto Nakaya, Isabela Judith Martins Benseñor, Rui Curi, Sandro Massao Hirabara
Software Mentions: 1
Published: over 5 years ago

10.14814/phy2.14608

Comparative plasma proteomics in muscle atrophy during cancer‐cachexia and disuse: The search for atrokines
Cited by: 13
Author(s): Seongkyun Lim, Kirsten R. Dunlap, Megan E. Rosa‐Caldwell, Wesley S. Haynie, Lisa T. Jansen, Tyrone A. Washington
Software Mentions: 1
Published: almost 6 years ago

10.14814/phy2.12853

Astrocyte-mediated regulation of multidrug resistance<scp>P</scp>-glycoprotein in fetal and neonatal brain endothelial cells: age-dependent effects
Cited by: 14
Author(s): Stephanie Baello, Majid Iqbal, William Gibb, Stephen G. Matthews
Software Mentions: 1
Published: about 10 years ago

10.1002/pld3.18

Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots
Cited by: 17
Author(s): He Huang, Malia Gehan, Sarah E. Huss, Sophie Alvarez, César Lizárraga, Ellen L. Gruebbling, John Gierer, Michael J. Naldrett, Rebecca K. Bindbeutel, Bradley S. Evans, Todd C. Mockler, Dmitri A. Nusinow
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0094089

Proteomics of Secretory and Endocytic Organelles in Giardia lamblia
Cited by: 34
Author(s): Petra B. Wampfler, Vinko Toševski, Paolo Nanni, Cornelia Spycher, Adrian B. Hehl
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0207483

Hyper-phosphorylation of Rb S249 together with CDK5R2/p39 overexpression are associated with impaired cell adhesion and epithelial-to-mesenchymal transition: Implications as a potential lung cancer grading and staging biomarker
Cited by: 8
Author(s): Jaileene Pérez‐Morales, Darielys Mejías-Morales, Stephanie Rivera-Rivera, Jonathan González-Flores, Mónica González-Loperena, Fernando Y. Cordero-Báez, Wilfredo M Pedreira-García, Camille Chardon‐Colon, Jennifer Cabán-Rivera, W. Douglas Cress, Edna Gordián, Teresita Muñoz-Antonia, Mauricio Cabrera‐Ríos, Angel A. Isidro, Domenico Coppola, Marilin Rosa, Theresa A. Boyle, Victoria Izumi, John M. Koomen, Pedro G. Santiago‐Cardona
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0103811

Detection of Mycobacterium tuberculosis Peptides in the Exosomes of Patients with Active and Latent M. tuberculosis Infection Using MRM-MS
Cited by: 121
Author(s): Nicole A. Kruh-Garcia, Lisa M. Wolfe, Lelia H. Chaisson, William Worodria, Payam Nahid, Jeffrey S. Schorey, J. Lucian Davis, Karen M. Dobos
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0104688

Cellular Proteins Associated with the Interior and Exterior of Vesicular Stomatitis Virus Virions
Cited by: 17
Author(s): Megan Moerdyk-Schauwecker, Sun-Il Hwang, Valery Z. Grdzelishvili
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0025379

Identification of Novel NPRAP/δ-Catenin-Interacting Proteins and the Direct Association of NPRAP with Dynamin 2
Cited by: 6
Author(s): Carolina Koutras, Georges Lévesque
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0120514

A C-Type Lectin from Bothrops jararacussu Venom Disrupts Staphylococcal Biofilms
Cited by: 26
Author(s): Raphael Contelli Klein, Mary Hellen Fabres-Klein, Leandro Licursi de Oliveira, Renato Neves Feio, François Malouin, Andréa de Oliveira Barros Ribon
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0212505

The digestive system in Zygentoma as an insect model for high cellulase activity
Cited by: 21
Author(s): Ratnasri Pothula, Derek Shirley, Omaththage P. Perera, William E. Klingeman, Cris Oppert, Heba Abdelgaffar, Brian R. Johnson, Juan Luís Jurat-Fuentes
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0095389

Quantitative Proteomic Analysis of Oral Brush Biopsies Identifies Secretory Leukocyte Protease Inhibitor as a Promising, Mechanism-Based Oral Cancer Biomarker
Cited by: 20
Author(s): Ya Yang, Nelson L. Rhodus, Frank G. Ondrey, Beverly R. Wuertz, Xiaobing Chen, Yaqin Zhu, Timothy J. Griffin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0121637

Baclofen, a GABABR Agonist, Ameliorates Immune-Complex Mediated Acute Lung Injury by Modulating Pro-Inflammatory Mediators
Cited by: 12
Author(s): Shufang Jin, Michael L. Merchant, Jeffrey D. Ritzenthaler, Kenneth R. McLeish, Eleanor Lederer, Edilson Torres-González, Mostafa Fraig, Michelle T. Barati, Alex B. Lentsch, Jesse Roman, Jon B. Klein, Madhavi J. Rane
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0026171

Reproducibility of an HPLC-ESI-MS/MS Method for the Measurement of Stable-Isotope Enrichment of in Vivo-Labeled Muscle ATP Synthase Beta Subunit
Cited by: 3
Author(s): Sarah Everman, Zhengping Yi, Paul Langlais, Lawrence J. Mandarino, Moulun Luo, Christine L. Roberts, Christos S. Katsanos
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0042835

Time-Course Proteome Analysis Reveals the Dynamic Response of Cryptococcus gattii Cells to Fluconazole
Cited by: 18
Author(s): Hin Siong Chong, Leona T. Campbell, Matthew P. Padula, Charles Hill, Elizabeth J. Harry, Simone S. Li, Marc R. Wilkins, Ben R. Herbert, Dee Carter
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0010317

Amino Acid Accumulation Limits the Overexpression of Proteins in Lactococcus lactis
Cited by: 26
Author(s): Ravi K. R. Marreddy, Eric R. Geertsma, Hjalmar P. Permentier, Joao Coelho Pinto, Jan Kok, Bert Poolman
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0049726

Improved Flow Cytometric Assessment Reveals Distinct Microvesicle (Cell-Derived Microparticle) Signatures in Joint Diseases
Cited by: 126
Author(s): Bence György, Tamás Szabó, Lilla Turiák, Matthew Wright, Petra Herczeg, Zsigmond Lédeczi, Ágnes Kittel, A. A. Polgar, Kálmán Tóth, Beáta Dérfalvi, Gergő Zelenák, István Böröcz, Bob Carr, György Nagy, Károly Vékey, András Falus, Edit I. Buzás
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0176533

Lys48 ubiquitination during the intraerythrocytic cycle of the rodent malaria parasite, Plasmodium chabaudi
Cited by: 3
Author(s): Lorena González-López, Rebeca Carballar-Lejarazú, Gerardo Arrevillaga Boni, Leticia Cortés-Martínez, Febe Elena Cázares-Raga, Abel Trujillo‐Ocampo, Mario H. Rodrı́guez, Anthony A. James, Fidel de la Cruz Hernández-Hernández
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0118861

Evidence for Intermolecular Interactions between the Intracellular Domains of the Arabidopsis Receptor-Like Kinase ACR4, Its Homologs and the Wox5 Transcription Factor
Cited by: 20
Author(s): Matthew R. Meyer, Shweta Shah, J. Zhang, Henry W. Rohrs, A. Gururaj Rao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0092698

Human Traumatic Brain Injury Induces Autoantibody Response against Glial Fibrillary Acidic Protein and Its Breakdown Products
Cited by: 138
Author(s): Zuo‐Feng Zhang, J. Susie Zoltewicz, Stefania Mondello, Kimberly Newsom, Zhihui Yang, Baofeng Yang, Firas Kobeissy, Joy Guingab, Olena Glushakova, Steven A. Robicsek, Shelley C. Heaton, András Büki, H. Julia Hannay, Mark S. Gold, Richard Rubenstein, Xi Lu, Jitendra R. Dave, Kara Schmid, Frank C. Tortella, Claudia S. Robertson, Kevin Wang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0078242

Temporal Association of Herpes Simplex Virus ICP4 with Cellular Complexes Functioning at Multiple Steps in PolII Transcription
Cited by: 40
Author(s): Lauren M. Wagner, Neal A. DeLuca
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0158033

Proteomic Analysis of the Rat Canalicular Membrane Reveals Expression of a Complex System of P4-ATPases in Liver
Cited by: 8
Author(s): Pururawa Mayank Chaubey, Lia Hofstetter, Bernd Roschitzki, Bruno Stieger
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0075625

Localization of HPV-18 E2 at Mitochondrial Membranes Induces ROS Release and Modulates Host Cell Metabolism
Cited by: 61
Author(s): Deborah Lai, Chew-Lim Tan, Jayantha Gunaratne, Ling Shih Quek, Wen Long Nei, Françoise Thierry, Sophie Bellanger
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0106872

Gestational Diabetes Is Characterized by Reduced Mitochondrial Protein Expression and Altered Calcium Signaling Proteins in Skeletal Muscle
Cited by: 47
Author(s): Kristen E. Boyle, Hyonseok Hwang, Rachel C. Janssen, James M. DeVente, Linda A. Barbour, Teri L. Hernandez, Lawrence J. Mandarino, Martha Lappas, Jacob E. Friedman
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0211003

Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcriptional regulator
Cited by: 13
Author(s): Abdallah Abdallah, Eveline M. Weerdenburg, Qingtian Guan, Roy Ummels, Stephanie Borggreve, Sabir A. Adroub, Tareq B. Malas, Raeece Naeem, Huoming Zhang, Thomas D. Otto, Wilbert Bitter, Arnab Pain
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0111160

Correction: SecDF as Part of the Sec-Translocase Facilitates Efficient Secretion of Bacillus cereus Toxins and Cell Wall-Associated Proteins
Cited by: 0
Author(s): NULL AUTHOR_ID
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0050929

Retinal Glycoprotein Enrichment by Concanavalin A Enabled Identification of Novel Membrane Autoantigen Synaptotagmin-1 in Equine Recurrent Uveitis
Cited by: 13
Author(s): Margarete E. Swadzba, Stefanie M. Hauck, Hassan Y. Naim, Barbara Amann, Cornelia A. Deeg
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0077331

Mutation in Integrin-Linked Kinase (ILKR211A) and Heat-Shock Protein 70 Comprise a Broadly Cardioprotective Complex
Cited by: 13
Author(s): Alexandra Traister, Mark A. Walsh, Shabana Aafaqi, Ming-Liang Lu, Xiaojing Dai, Mark R. Henkleman, Abdul Momen, Yu Quing Zhou, Mansoor Husain, Sara Arab, Sara Piran, Gregory E. Hannigan, John G. Coles
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0018302

The Ccr4-Not Complex Interacts with the mRNA Export Machinery
Cited by: 48
Author(s): Shana C. Kerr, Nowel Azzouz, Stephen M. Fuchs, Martine A. Collart, Brian D. Strahl, Anita H. Corbett, R. Nicholas Laribee
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0137243

Differential Subcellular Localization of Leishmania Alba-Domain Proteins throughout the Parasite Development
Cited by: 33
Author(s): Aurélien Dupé, Carole Dumas, Barbara Papadopoulou
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0204673

N-dodecanoyl-homoserine lactone influences the levels of thiol and proteins related to oxidation-reduction process in Salmonella
Cited by: 11
Author(s): Felipe Alves de Almeida, Deisy Guimarães Carneiro, Tiago Antônio de Oliveira Mendes, Edvaldo Barros, Uelinton Manoel Pinto, Leandro Licursi de Oliveira, Maria Cristina Dantas Vanetti
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0029210

Phosphorylation and Activation of the Plasma Membrane Na+/H+ Exchanger (NHE1) during Osmotic Cell Shrinkage
Cited by: 13
Author(s): Robert R. Rigor, Catalina Damoc, Brett S. Phinney, Peter M Cala
Software Mentions: 1
Published: over 14 years ago