10.1186/1471-2164-10-327
Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cellsCited by: 189
Author(s): Mike J. Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath
Software Mentions: 1
Published: about 17 years ago
10.1186/s12864-016-3201-5
Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrassCited by: 14
Author(s): Taylor P. Frazier, Nathan A. Palmer, Fuliang Xie, Christian M. Tobias, Teresa Donze-Reiner, Aureliano Bombarely, Kevin L. Childs, Shengqiang Shu, Jerry Jenkins, Jeremy Schmutz, Baohong Zhang, Gautam Sarath, Bingyu Zhao
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-019-5773-3
A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryosCited by: 11
Author(s): Michelle M. Bertke, Kyle M. Dubiak, Laura Cronin, Erliang Zeng, Paul W. Huber
Software Mentions: 1
Published: over 7 years ago
10.3390/e20120962
Range Entropy: A Bridge between Signal Complexity and Self-SimilarityCited by: 34
Author(s): Amir Omidvarnia, Mostefa Mesbah, Mangor Pedersen, Graeme D. Jackson
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-020-07250-1
Deficiencies in the formation and regulation of anther cuticle and tryphine contribute to male sterility in cotton PGMS lineCited by: 5
Author(s): Meng Zhang, Ji Liu, Qiang Ma, Yuan Qin, Hantao Wang, Pengyun Chen, Liang Ma, Xiaokang Fu, Longfu Zhu, Hengling Wei, Shuang Yu
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-12-S3-S3
Liverome: a curated database of liver cancer-related gene signatures with self-contained context informationCited by: 40
Author(s): Langho Lee, Kai Wang, Gang Li, Zhi Xie, Yuli Wang, Jiangchun Xu, Shaoxian Sun, David Pocalyko, Jong Bhak, Chulhong Kim, Kee-Ho Lee, Ye Jin Jang, Young Il Yeom, Hyang Sook Yoo, Seungwoo Hwang
Software Mentions: 1
Published: over 14 years ago
10.1186/s13321-021-00511-5
Assessing the calibration in toxicological in vitro models with conformal predictionCited by: 9
Author(s): Andrea Morger, Fredrik Svensson, Staffan Arvidsson, Niharika Gauraha, Ulf Norinder, Ola Spjuth, Andrea Volkamer
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0123811
MEVA - An Interactive Visualization Application for Validation of Multifaceted Meteorological Data with Multiple 3D DevicesCited by: 14
Author(s): Carolin Helbig, Lars Bilke, Hans‐Stefan Bauer, Michael Böttinger, Olaf Kolditz
Software Mentions: 1
Published: over 11 years ago
10.1186/s12864-016-3176-2
Large-scale gene co-expression network as a source of functional annotation for cattle genesCited by: 16
Author(s): Hamid Beiki, A. Nejati‐Javaremi, A. Pakdel, Ali Masoudi‐Nejad, Zhi-Liang Hu, James M. Reecy
Software Mentions: 1
Published: almost 10 years ago
10.3390/e20070540
Information Guided Exploration of Scalar Values and Isocontours in Ensemble DatasetsCited by: 3
Author(s): Subhashis Hazarika, Ayan Biswas, Soumya Dutta, Han‐Wei Shen
Software Mentions: 1
Published: about 8 years ago
10.1186/s12864-020-07193-7
Temporal transcriptomic differences between tolerant and susceptible genotypes contribute to rice drought toleranceCited by: 8
Author(s): Hui Xia, Xiaoyan Ma, Kai Xu, Lei Wang, Hongyan Liu, Liang Chen, Lijun Luo
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12864-019-5708-z
Developmental transcriptomics of Chinese cordyceps reveals gene regulatory network and expression profiles of sexual development-related genesCited by: 19
Author(s): Xiao Li, Fen Wang, Qing Liu, Quanping Li, Zhengming Qian, Xiaoling Zhang, Kuan Li, Wenjia Li, Caihong Dong
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-015-1535-z
Poplar trees reconfigure the transcriptome and metabolome in response to drought in a genotype- and time-of-day-dependent mannerCited by: 52
Author(s): Erin T. Hamanishi, Genoa L H Barchet, Rébecca Dauwe, Shawn D. Mansfield, Malcolm M. Campbell
Software Mentions: 1
Published: over 11 years ago
10.1186/s12859-016-0943-7
Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL)Cited by: 130
Author(s): Devin C. Koestler, Meaghan J. Jones, Joseph Usset, Brock C. Christensen, Rondi A. Butler, Michæl S. Kobor, John K. Wiencke, Karl T. Kelsey
Software Mentions: 1
Published: over 10 years ago
10.1007/s00414-019-02011-6
Postmortem proteomics to discover biomarkers for forensic PMI estimationCited by: 43
Author(s): Kyoung-Min Choi, Angela Zissler, Eun-Jung Kim, Bianca Ehrenfellner, Eunji Cho, Sein Lee, Peter Steinbacher, Ki Na Yun, Jong Hwan Shin, Jin Young Kim, Walter Stoiber, Heesun Chung, Fabio Monticelli, Jae‐Young Kim, Stefan Pittner
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-019-5549-9
A modular analysis of microglia gene expression, insights into the aged phenotypeCited by: 22
Author(s): Christine E. Cho, Sagar S. Damle, Edward V. Wancewicz, Swagatam Mukhopadhyay, Christopher E. Hart, Curt Mazur, Eric E. Swayze, Fredrik Kamme
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-15-33
Sex differences in the human peripheral blood transcriptomeCited by: 124
Author(s): Ritsert C. Jansen, Sandra Batista, Andrew I. Brooks, Jay A. Tischfield, Gonneke Willemsen, Gerard van Grootheest, Jouke Jan Hottenga, Yuri Milaneschi, Hamdi Mbarek, Vered Madar, Wouter J. Peyrot, Jacqueline M. Vink, C. L. Verweij, Eco J. C. de Geus, Johannes H. Smit, Fred A. Wright, Patrick F. Sullivan, Dorret I. Boomsma, Brenda W. J. H. Penninx
Software Mentions: 1
Published: over 12 years ago
10.1186/s12864-020-07352-w
Global transcriptome changes of elongating internode of sugarcane in response to mepiquat chlorideCited by: 8
Author(s): Rongfa Chen, Yanting Fan, Huiwen Zhou, Shanping Mo, Zhongfeng Zhou, Haifeng Yan, Ting Luo, Xing Huang, Mengling Weng, Prakash Lakshmanan, Yang‐Rui Li, Lihang Qiu, Jianming Wu
Software Mentions: 1
Published: over 5 years ago
10.1186/1471-2164-15-730
Gene co-expression network analysis in Rhodobacter capsulatus and application to comparative expression analysis of Rhodobacter sphaeroidesCited by: 18
Author(s): Lourdes Peña‐Castillo, Ryan G. Mercer, Anastasia Gurinovich, Stephen Callister, Aaron Wright, Alexander B. Westbye, J. Thomas Beatty, Andrew S. Lang
Software Mentions: 1
Published: over 12 years ago
10.1186/s12864-018-4756-0
Transcriptome display during tilapia sex determination and differentiation as revealed by RNA-Seq analysisCited by: 49
Author(s): Wenjing Tao, Jinlin Chen, Dejie Tan, Jing Yang, Lina Sun, Jing Wei, Matthew A. Conte, Thomas D. Kocher, Deshou Wang
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-015-1238-5
Gene coexpression networks reveal key drivers of phenotypic divergence in porcine muscleCited by: 10
Author(s): Xiao Ling Zhao, Zhaoyang Liu, Qingxin Liu
Software Mentions: 1
Published: over 11 years ago
10.3389/fcell.2020.00251
Non-AUG Translation Initiation Generates Peroxisomal Isoforms of 6-Phosphogluconate Dehydrogenase in FungiCited by: 4
Author(s): Marco Kremp, Elena Bittner, Domenica Martorana, Alexander Klingenberger, Thorsten Stehlik, Michael Bölker, Johannes Freitag
Software Mentions: 1
Published: over 6 years ago
10.1186/1472-6947-12-41
Text summarization as a decision support aidCited by: 13
Author(s): T. Elizabeth Workman, Marcelo Fiszman, John F. Hurdle
Software Mentions: 1
Published: about 14 years ago
10.1186/s12864-019-6035-0
MiR-190a potentially ameliorates postoperative cognitive dysfunction by regulating Tiam1Cited by: 18
Author(s): Qiang Liu, Aisheng Hou, Yongyi Zhang, Ying Guo, Jingjing Li, Yinghao Yao, Kaimeng Niu, Hao Li, Yunlong Ma, Jiangbei Cao
Software Mentions: 1
Published: about 7 years ago
10.1007/s11517-016-1479-8
Improved epileptic seizure detection combining dynamic feature normalization with EEG novelty detectionCited by: 19
Author(s): J.G. Bogaarts, Danny Hilkman, Erik D. Gommer, Vivianne H.J.M. van Kranen-Mastenbroek, J. P. H. Reulen
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0111005
Similarity from Multi-Dimensional Scaling: Solving the Accuracy and Diversity Dilemma in Information FilteringCited by: 8
Author(s): Wei Zeng, An Zeng, Hao Lv, Mingsheng Shang, Yicheng Zhang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0162235
Curiosity Search: Producing Generalists by Encouraging Individuals to Continually Explore and Acquire Skills throughout Their LifetimeCited by: 22
Author(s): Christopher Stanton, Jeff Clune
Software Mentions: 1
Published: almost 10 years ago
10.1007/s41649-021-00178-y
A Proposed Model of Core Competencies for Research Ethics ConsultantsCited by: 1
Author(s): Kenji Matsui, Yusuke Inoue, Hiroaki Yanagawa, Tadao Takano
Software Mentions: 1
Published: about 5 years ago
10.1186/s12871-015-0169-7
Teaching basic lung isolation skills on human anatomy simulator: attainment and retention of lung isolation skillsCited by: 7
Author(s): Rana K. Latif, Edgar M. VanHorne, Sunitha Kanchi Kandadai, Alexander Bautista, Aurel Neamtu, Anupama Wadhwa, Mary B. Carter, Craig Ziegler, Mohammed Faisal Memon, Ozan Akça
Software Mentions: 1
Published: over 10 years ago
10.1111/bcp.14325
Improving junior doctor medicine prescribing and patient safety: An intervention using personalised, structured, video‐enhanced feedback and deliberate practiceCited by: 10
Author(s): William Green, Muhammad Shahzad, Stephen Wood, María Martínez, Andrew Baines, Ahmad Navid, Robert Jay, Z Whysall, John Sandars, Rakesh Patel
Software Mentions: 1
Published: over 6 years ago
10.1080/10872981.2019.1679945
The diagnostic expertise acceleration module (DEAM): promoting the formation of organized knowledgeCited by: 2
Author(s): Brian Rissmiller, Danny Castro, Charles G. Minard, Moushumi Sur, Kevin Roy, Teri L. Turner, Satid Thammasitboon
Software Mentions: 1
Published: over 7 years ago
10.1007/s11042-021-11321-0
Augmented reality flavor: cross-modal mapping across gustation, olfaction, and visionCited by: 5
Author(s): Osama Halabi, M. A. Saleh
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0045370
Meditation Experience Predicts Introspective AccuracyCited by: 129
Author(s): Kieran C. R. Fox, Pierre Zakarauskas, Matthew L. Dixon, Mellissa Ellamil, Evan Thompson, Kalina Christoff
Software Mentions: 1
Published: almost 14 years ago
10.1186/s12864-019-5778-y
The adaptation strategies of Herpetospermum pedunculosum (Ser.) Baill at altitude gradient of the Tibetan plateau by physiological and metabolomic methodsCited by: 21
Author(s): Yong Zhao, Frank F. Xu, Jia Liu, Fang Guan, Quan Hong, Fanjuan Meng
Software Mentions: 1
Published: about 7 years ago
10.1186/s41235-018-0097-4
New approaches to the analysis of eye movement behaviour across expertise while viewing brain MRIsCited by: 10
Author(s): Emily M. Crowe, Iain D. Gilchrist, Christopher Kent
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-019-6025-2
Transcriptome-wide association study and eQTL analysis to assess the genetic basis of bulb-yield traits in garlic (Allium sativum)Cited by: 7
Author(s): Siyuan Zhu, Xiaojun Chen, Xia Liu, Jian Zhao, Touming Liu
Software Mentions: 1
Published: about 7 years ago
10.1186/1471-2164-15-1015
Key regulators in prostate cancer identified by co-expression module analysisCited by: 23
Author(s): Junfeng Jiang, Peilin Jia, Zhongming Zhao, Bairong Shen
Software Mentions: 1
Published: over 11 years ago
10.1186/1471-2164-14-112
Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteriaCited by: 31
Author(s): Jiangxin Wang, Gang Wu, Lei Chen, Weiwen Zhang
Software Mentions: 1
Published: over 13 years ago
10.1186/s12864-019-5777-z
Differential expression of innate and adaptive immune genes in the survivors of three gibel carp gynogenetic clones after herpesvirus challengeCited by: 17
Author(s): Wei-Jia Lu, Fan-Xiang Gao, Yan Wang, Qi-Ya Zhang, Zhi Li, Xiaojuan Zhang, Li Zhou, Jian‐Fang Gui
Software Mentions: 1
Published: about 7 years ago
10.1186/1471-2164-11-161
Functional annotation of novel lineage-specific genes using co-expression and promoter analysisCited by: 8
Author(s): Charu G. Kumar, Robin E. Everts, Juan J. Loor, Harris A. Lewin
Software Mentions: 1
Published: over 16 years ago
10.1186/s12864-020-6654-5
Transcriptomic profiling of Solanum peruvianum LA3858 revealed a Mi-3-mediated hypersensitive response to Meloidogyne incognitaCited by: 11
Author(s): Chong Du, Jingbin Jiang, He Zhang, Tingting Zhao, Huanhuan Yang, Dongye Zhang, Zhentong Zhao, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: over 6 years ago
10.12688/f1000research.16605.1
KnetMaps: a BioJS component to visualize biological knowledge networksCited by: 9
Author(s): Ajit Singh, Christopher J. Rawlings, Keywan Hassani‐Pak
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12864-018-5358-6
Transcriptomic profiling reveals molecular regulation of seasonal reproduction in Tibetan highland fish, Gymnocypris przewalskiiCited by: 20
Author(s): Fei Tian, Sijia Liu, Jianquan Shi, Hongfang Qi, Kai Zhao, Bin Xie
Software Mentions: 1
Published: over 7 years ago
10.1093/gigascience/giab025
An analysis of security vulnerabilities in container images for scientific data analysisCited by: 12
Author(s): Bhupinder Kaur, Mathieu Dugré, Aiman Hanna, Tristan Glatard
Software Mentions: 1
Published: about 5 years ago
10.1186/s12864-019-6418-2
De novo sequencing of the transcriptome reveals regulators of the floral transition in Fargesia macclureana (Poaceae)Cited by: 8
Author(s): Ying Liu, Chunxia Zhang, Kebin Yang, Jingjing Shi, Yulong Ding, Zhimin Gao
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-018-5098-7
Transcriptomic response to parasite infection in Nile tilapia (Oreochromis niloticus) depends on rearing densityCited by: 36
Author(s): Amy Ellison, Tamsyn M. Uren Webster, Olivier Rey, Carlos García de Leániz, Sofía Consuegra, Pablo Orozco‐terWengel, Joanne Cable
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2164-15-1056
Metabolic and co-expression network-based analyses associated with nitrate response in riceCited by: 40
Author(s): Viktoriya Coneva, Caitlin M. A. Simopoulos, José A. Casaretto, Ashraf El-Kereamy, David Guevara, Jonathan Cohn, Tong Zhu, Lining Guo, Danny Alexander, Yong‐Mei Bi, Paul D. McNicholas, Steven J. Rothstein
Software Mentions: 1
Published: over 11 years ago
10.1186/s12864-021-07368-w
De novo transcriptome in roots of switchgrass (Panicum virgatum L.) reveals gene expression dynamic and act network under alkaline salt stressCited by: 22
Author(s): Pan Zhang, Tianqi Duo, Fengdan Wang, Xunzhong Zhang, Zouzhuan Yang, Guofu Hu
Software Mentions: 1
Published: over 5 years ago
10.1155/2014/246469
Path Planning Method for UUV Homing and Docking in Movement Disorders EnvironmentCited by: 4
Author(s): Zheping Yan, Chao Deng, Dongnan Chi, Tao Chen, Shixi Hou
Software Mentions: 1
Published: over 12 years ago
10.1186/s40064-016-3230-1
A dynamic novel approach for bid/no-bid decision-makingCited by: 6
Author(s): Huawang Shi, Hang Yin, Wei Lian-yu
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-018-4999-9
Gene co-expression network analysis reveals coordinated regulation of three characteristic secondary biosynthetic pathways in tea plant (Camellia sinensis)Cited by: 57
Author(s): Yuling Tai, Liu Chun, Shijie Yu, Hua Yang, Jun Sun, Chunxiao Guo, Bei Huang, Zhaoye Liu, Yuan Yang, Enhua Xia, Chaoling Wei, Xiaochun Wan
Software Mentions: 1
Published: about 8 years ago
10.1038/sdata.2018.193
Reference data on thickness and mechanics of tissue layers and anthropometry of musculoskeletal extremitiesCited by: 6
Author(s): Erica E. Neumann, Tammy M. Owings, Tyler Schimmoeller, Tara F. Nagle, Robb Colbrunn, Benjamin J. Landis, J. Eric Jelovsek, Michael H. Wong, Joy P. Ku, Ahmet Erdemir
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12916-020-01741-4
Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term healthCited by: 10
Author(s): Xiumei Hong, Boyang Zhang, Liming Liang, Yan Zhang, Yuelong Ji, Guoying Wang, Hongkai Ji, Clary B. Clish, Irina Burd, Colleen Pearson, Barry Zuckerman, Frank B. Hu, Xiaobin Wang
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-020-78031-9
Urinary metabolic phenotyping for Alzheimer’s diseaseCited by: 26
Author(s): Natalja Kurbatova, Manik Garg, Luke Whiley, Elena Chekmeneva, Beatriz Jiménez, María José Gómez-Romero, Jake T M Pearce, Torben Kimhofer, Ellie D’Hondt, Hilkka Soininen, Iwona Kłoszewska, Patrizia Mecocci, Magda Tsolaki, Bruno Vellas, Dag Aarsland, Alejo J. Nevado‐Holgado, Benjamine Liu, Stuart G. Snowden, Petroula Proitsi, Nicholas J. Ashton, Abdul Hye, Cristina Legido‐Quigley, Matthew R. Lewis, Jeremy K. Nicholson, Elaine Holmes, Alvis Brāzma, Simon Lovestone
Software Mentions: 1
Published: over 5 years ago
10.3390/v7052683
The Use of Convalescent Sera in Immune-Electron Microscopy to Detect Non-Suspected/New Viral AgentsCited by: 13
Author(s): Antonio Llombart–Bosch, Claudia Marcela Tittarelli, M. Cerioli
Software Mentions: 1
Published: over 11 years ago
10.7717/peerj-cs.240
Making simulation results reproducible—Survey, guidelines, and examples based on Gradle and DockerCited by: 4
Author(s): Wilfried Elmenreich, Philipp Moll, Sebastian Theuermann, Mathias Lux
Software Mentions: 1
Published: over 6 years ago
10.1186/1755-8794-7-51
Genetic network identifies novel pathways contributing to atherosclerosis susceptibility in the innominate arteryCited by: 9
Author(s): Jody Albright, Pamela M. Quizon, Aldons J. Lusis, Brian J. Bennett
Software Mentions: 1
Published: about 12 years ago
10.1186/s12920-015-0098-9
Co-expression network of neural-differentiation genes shows specific pattern in schizophreniaCited by: 39
Author(s): Mariana Maschietto, Ana Carolina Tahira, Renato Puga, Leandro Lima, Daniel Mariani, Bruna Paulsen, Paulo Belmonte-de-Abreu, Henrique Cursino Vieira, Ana Cristina Victorino Krepischi, Dirce Maria Carraro, Joana Almeida Palha, Stevens K. Rehen, Helena Brentani
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0169803
Dynamic Voltage Frequency Scaling Simulator for Real Workflows Energy-Aware Management in Green Cloud ComputingCited by: 22
Author(s): Iván Tomás Cotes-Ruiz, Rocío Pérez de Prado, S. García-Galán, J. E. Muñoz Expósito, N. Ruiz-Reyes
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-021-95317-8
Evaluation of femtosecond laser-induced breakdown spectroscopy system as an offline coal analyzerCited by: 2
Author(s): Sahar Sheta, Zongyu Hou, Yun Wang, Zhe Wang
Software Mentions: 1
Published: about 5 years ago
10.1155/2013/890578
On the Accurate Identification of Network Paths Having a Common BottleneckCited by: 4
Author(s): Muhammad Murtaza Yousaf, Michael Welzl
Software Mentions: 1
Published: over 13 years ago
10.1155/2015/218379
Emergency Situation Prediction Mechanism: A Novel Approach for Intelligent Transportation System Using Vehicular Ad Hoc NetworksCited by: 5
Author(s): P. Ganeshkumar, P. Gokulakrishnan
Software Mentions: 1
Published: over 11 years ago
10.1186/s12920-018-0407-1
Identification of glioblastoma gene prognosis modules based on weighted gene co-expression network analysisCited by: 32
Author(s): Pengfei Xu, Jian Yang, Junhui Liu, Yang Xue, Jianming Liao, Fanen Yuan, Yang Xu, Baohui Liu
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12920-016-0171-z
Differential gene network analysis for the identification of asthma-associated therapeutic targets in allergen-specific T-helper memory responsesCited by: 30
Author(s): Niamh M. Troy, Elysia M. Hollams, Patrick G. Holt, Anthony Bosco
Software Mentions: 1
Published: over 10 years ago
10.3390/s90604824
Medium Access Control for Opportunistic Concurrent Transmissions under Shadowing ChannelsCited by: 7
Author(s): In Keun Son, Shiwen Mao, Seung Min Hur
Software Mentions: 1
Published: about 17 years ago
10.3390/s90806028
MCBT: Multi-Hop Cluster Based Stable Backbone Trees for Data Collection and Dissemination in WSNsCited by: 29
Author(s): Inyoung Shin, Moonseong Kim, Matt W. Mutka, Hyunseung Choo, Tae Jin Lee
Software Mentions: 1
Published: about 17 years ago
10.1186/s12920-019-0608-2
A new method for mining information of co-expression network based on multi-cancers integrated dataCited by: 4
Author(s): Mi-Xiao Hou, Ying-Lian Gao, Jin-Xing Liu, Junliang Shang, Rong Zhu, Shasha Yuan
Software Mentions: 1
Published: over 6 years ago
10.1186/s12920-021-00890-6
Identification of monocyte-associated genes as predictive biomarkers of heart failure after acute myocardial infarctionCited by: 11
Author(s): Qixin Chen, Qijin Yin, Junxian Song, Chuan‐Fen Liu, Chang Seop Hong, Sufang Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s12920-021-01012-y
Multivariate transcriptome analysis identifies networks and key drivers of chronic lymphocytic leukemia relapse risk and patient survivalCited by: 2
Author(s): Tiara Griffen, Eric B. Dammer, Courtney D. Dill, Kaylin Carey, Corey Young, Sha’Kayla Nunez, Adaugo Q. Ohandjo, Steven M. Kornblau, James W. Lillard
Software Mentions: 1
Published: about 5 years ago
10.3390/s150102021
Double Cluster Heads Model for Secure and Accurate Data Fusion in Wireless Sensor NetworksCited by: 27
Author(s): Junsong Fu, Yun Liu
Software Mentions: 1
Published: over 11 years ago
10.3390/s150820373
Fuzzy Logic-Based Guaranteed Lifetime Protocol for Real-Time Wireless Sensor NetworksCited by: 29
Author(s): Babar Shah, Farkhund Iqbal, Ali Abbas, Ki-Il Kim
Software Mentions: 1
Published: about 11 years ago
10.3390/s16030386
An Efficient Distributed Coverage Hole Detection Protocol for Wireless Sensor NetworksCited by: 35
Author(s): Prasan Kumar Sahoo, Ming-Jer Chiang, Shih‐Lin Wu
Software Mentions: 1
Published: over 10 years ago
10.1186/s12866-020-01939-9
Targeting the honey bee gut parasite Nosema ceranae with siRNA positively affects gut bacteriaCited by: 12
Author(s): Qiang Huang, Jay D. Evans
Software Mentions: 1
Published: about 6 years ago
10.3390/s17091931
A Fair Contention Access Scheme for Low-Priority Traffic in Wireless Body Area NetworksCited by: 21
Author(s): Shagufta Henna, Muhammad Sajeel, Faisal Bashir, Muhammad Asfand-e-yar, Muhammad Tauqir
Software Mentions: 1
Published: almost 9 years ago
10.3390/s18020325
Performance Evaluation of IEEE 802.11ah Networks With High-Throughput Bidirectional TrafficCited by: 47
Author(s): Amina Šljivo, Dwight Kerkhove, Le Tian, Jeroen Famaey, Adrian Munteanu, Ingrid Moerman, Jeroen Hoebeke, Eli De Poorter
Software Mentions: 1
Published: over 8 years ago
10.3390/s18041121
Energy-Efficient Data Collection Method for Sensor Networks by Integrating Asymmetric Communication and Wake-Up RadioCited by: 11
Author(s): Masanari Iwata, Suhua Tang, Sadao Obana
Software Mentions: 1
Published: over 8 years ago
10.3390/s18051573
PCPA: A Practical Certificateless Conditional Privacy Preserving Authentication Scheme for Vehicular Ad Hoc NetworksCited by: 39
Author(s): Minglei Yang, Xiaoqin Shen
Software Mentions: 1
Published: over 8 years ago
10.1186/s12883-021-02156-1
Identification of upregulated NF-κB inhibitor alpha and IRAK3 targeting lncRNA following intracranial aneurysm rupture-induced subarachnoid hemorrhageCited by: 8
Author(s): Wei Leng, Dan Fan, Zhong Ren, Qiaoying Li
Software Mentions: 1
Published: over 5 years ago
10.3390/s18124116
Adaptable and Automated Small UAV Deployments via VirtualizationCited by: 27
Author(s): Borja Nogales, Víctor Sanchez-Agüero, Iván Vidal, Francisco Valera
Software Mentions: 1
Published: over 7 years ago
10.1186/s12870-019-1900-1
Genome-wide transcriptomic analysis of a desert willow, Salix psammophila, reveals the function of hub genes SpMDP1 and SpWRKY33 in drought toleranceCited by: 10
Author(s): Huixia Jia, Zening Jin, Jianbo Li, Peng Sun, Yahong Zhang, Xuebing Xin, Mengzhu Lu, Jianjun Hu
Software Mentions: 1
Published: about 7 years ago
10.1186/s12870-020-02513-1
Comparative analysis of full-length transcriptomes based on hybrid population reveals regulatory mechanisms of anthocyanin biosynthesis in sweet potato (Ipomoea batatas (L.) Lam)Cited by: 6
Author(s): Zhen Qin, Fuyun Hou, Aixian Li, Shuxu Dong, Chengxing Huang, Zhang Li-ming
Software Mentions: 1
Published: about 6 years ago
10.3390/metabo9080157
Bronchoalveolar Lavage Fluid from COPD Patients Reveals More Compounds Associated with Disease than Matched PlasmaCited by: 27
Author(s): Eitan Halper-Stromberg, Lucas A. Gillenwater, Charmion Cruickshank‐Quinn, Wanda K. O’Neal, Nichole Reisdorph, Irina Petrache, Yonghua Zhuang, Wassim W. Labaki, Jeffrey L. Curtis, James M. Wells, Stephen I. Rennard, Katherine Pratte, Prescott G. Woodruff, Kathleen A. Stringer, Katerina Kechris, Russell P. Bowler
Software Mentions: 1
Published: about 7 years ago
10.3390/metabo10120511
The Metabolomics of Childhood Atopic Diseases: A Comprehensive Pathway-Specific ReviewCited by: 17
Author(s): M.S. Schjødt, Gözde Gürdeniz, Bo Chawes
Software Mentions: 1
Published: over 5 years ago
10.1007/s11306-020-01733-8
Evaluation of the use of untargeted metabolomics in the safety assessment of genetically modified cropsCited by: 17
Author(s): Mohamed Bedair, Kevin C. Glenn
Software Mentions: 1
Published: almost 6 years ago
10.1007/s11306-017-1263-2
Estimation of metabolite networks with regard to a specific covariable: applications to plant and human dataCited by: 9
Author(s): Georgios Bartzis, Joris Deelen, Júlio Maia, Wilco Ligterink, Henk W. M. Hilhorst, Jeanine J. Houwing-Duistermaat, Fred van Eeuwijk, Hae‐Won Uh
Software Mentions: 1
Published: almost 9 years ago
10.1186/2049-2618-1-17
Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationshipsCited by: 230
Author(s): Ian Howard Mchardy, Maryam Goudarzi, Man‐Li Tong, Paul Ruegger, Emma Schwager, John R. Weger, Thomas G. Graeber, Justin L. Sonnenburg, Steve Horvath, Curtis Huttenhower, Dermot P. McGovern, Albert J. Fornace, James Borneman, Jonathan Braun
Software Mentions: 1
Published: about 13 years ago
10.3390/microorganisms8040518
iTRAQ-based Quantitative Proteomics Analysis Identifies Host Pathways Modulated during Toxoplasma gondii Infection in SwineCited by: 7
Author(s): Jun-Jun He, Jun Ma, Jin‐Lei Wang, Fu-Kai Zhang, Jiexi Li, Bintao Zhai, Hany M. Elsheikha, Xing‐Quan Zhu
Software Mentions: 1
Published: over 6 years ago
10.1186/s13229-020-00382-x
Functional relationships between recessive inherited genes and genes with de novo variants in autism spectrum disorderCited by: 4
Author(s): Lin Wang, Yi Zhang, Kuokuo Li, Zheng Wang, Xiaomeng Wang, Bin Li, Guizhe Zhao, Zhenghuan Fang, Zhengbao Ling, Tengfei Luo, Xia Lu, Yanping Li, Hui Guo, Zhengmao Hu, Jinchen Li, Zhen Sun, Kun Xia
Software Mentions: 1
Published: almost 6 years ago
10.1186/2040-2392-5-22
DAWN: a framework to identify autism genes and subnetworks using gene expression and geneticsCited by: 111
Author(s): Li Liu, Jing Lei, Stephan Sanders, A. Jeremy Willsey, Yan Kou, A. Ercüment Çiçek, Lambertus Klei, Cong Lu, Xin He, Mingfeng Li, Rebecca Muhle, Avi Ma’ayan, James P. Noonan, Nenad Šestan, Kathryn McFadden, Matthew W. State, Joseph D. Buxbaum, Bernie Devlin, Kathryn Roeder
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pcbi.1005836
Maximum entropy methods for extracting the learned features of deep neural networksCited by: 37
Author(s): Alex I Finnegan, Jun S. Song
Software Mentions: 1
Published: almost 9 years ago
10.1093/molbev/msab004
Functional Diversification, Redundancy, and Epistasis among Paralogs of the <i>Drosophila melanogaster Obp50a–d</i> Gene ClusterCited by: 10
Author(s): Joel A. Johnstun, Vijay Shankar, Sneha S Mokashi, Lakshmi T. Sunkara, Ugonna E Ihearahu, Roberta Lyman, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 1
Published: over 5 years ago
10.1186/s12943-015-0350-0
Correlations between immune response and vascularization qRT-PCR gene expression clusters in squamous cervical cancerCited by: 36
Author(s): Simone Punt, Jeanine J. Houwing-Duistermaat, Iris A. Schulkens, Victor L. Thijssen, Elisabeth M. Osse, Cornelis D. de Kroon, Arjan W. Griffioen, Gert Jan Fleuren, Arko Gorter, Ekaterina S. Jordanova
Software Mentions: 1
Published: over 11 years ago
10.1186/s12943-021-01341-7
The role of mRNA in the development, diagnosis, treatment and prognosis of neural tumorsCited by: 16
Author(s): Yiyang Zheng, Yingwei Luo, Xixi Chen, Huiting Li, Baojun Huang, Baofeng Zhou, Lei Zhu, Xianhui Kang, Geng Wang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12943-021-01398-4
N6-methyladenosine-modified circIGF2BP3 inhibits CD8+ T-cell responses to facilitate tumor immune evasion by promoting the deubiquitination of PD-L1 in non-small cell lung cancerCited by: 121
Author(s): Zhenchuan Liu, Tingting Wang, Yunlang She, Kaiqing Wu, Shaorui Gu, Lei Li, Chunyan Dong, Chang Chen, Yilu Zhou
Software Mentions: 1
Published: about 5 years ago
10.1074/mcp.RA118.001021
Characterization of Proteome Variation During Modern Maize Breeding*Cited by: 34
Author(s): Luguang Jiang, Bo Li, Shengxue Liu, Hongwei Wang, Cuiping Li, Shuhui Song, Mary Beatty, Gina Zastrow-Hayes, Xiaohong Yang, Feng Qin, Yan He
Software Mentions: 1
Published: over 7 years ago
10.3390/molecules25010190
Metabolome and Transcriptome Analysis Reveals Putative Genes Involved in Anthocyanin Accumulation and Coloration in White and Pink Tea (Camellia sinensis) FlowerCited by: 51
Author(s): Caibi Zhou, Xin Mei, Dylan O’Neill Rothenberg, Zuoren Yang, Wenting Zhang, Shihua Wan, Haijun Yang, Lingyun Zhang
Software Mentions: 1
Published: over 6 years ago
10.1002/mgg3.1478
Identification of a missense <i>ARSA</i> mutation in metachromatic leukodystrophy and its potential pathogenic mechanismCited by: 2
Author(s): Liyuan Guo, Bo Jin, Yidan Zhang, Jing Wang
Software Mentions: 1
Published: almost 6 years ago
10.1002/mgg3.427
Identification and functional annotation of metabolism-associated lncRNAs and their related protein-coding genes in gastric cancerCited by: 14
Author(s): Xiaoyan Mo, Tianwen Li, Youhua Xie, Linwen Zhu, Bingxiu Xiao, Qi Liao, Junming Guo
Software Mentions: 1
Published: about 8 years ago
10.1007/s12035-021-02388-9
Sorting Out Sorting Nexins Functions in the Nervous System in Health and DiseaseCited by: 13
Author(s): Neide Vieira, Teresa Rito, Margarida Correia-Neves, Nuno Sousa
Software Mentions: 1
Published: over 5 years ago
10.1186/s13024-016-0085-4
Frontotemporal dementia: insights into the biological underpinnings of disease through gene co-expression network analysisCited by: 39
Author(s): Raffaele Ferrari, Paola Forabosco, Jana Vandrovcová, Juan A. Botía, Sebastian Guelfi, Jason D. Warren, Parastoo Momeni, Michael E. Weale, Mina Ryten, John Hardy
Software Mentions: 1
Published: over 10 years ago