10.1038/s41388-019-0845-z

The protein secretion modulator TMED9 drives CNIH4/TGFα/GLI signaling opposing TMED3-WNT-TCF to promote colon cancer metastases
Cited by: 34
Author(s): Sasmita Mishra, Carolina Bernal, Marianna Silvano, Santosh Anand, Ariel Ruiz i Altaba
Software Mentions: 3
Published: about 7 years ago

10.3389/fonc.2021.630417

Prognostic and Immunological Role of mRNA ac4C Regulator NAT10 in Pan-Cancer: New Territory for Cancer Research?
Cited by: 19
Author(s): Chuanxi Yang, Tingting Wu, Jing Zhang, Jinhui Liu, Kun Zhao, Wei Sun, Xin Zhou, Xiangqing Kong, Jing Shi
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms22073626

Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid Differentiation and Primary from Immortalized Erythroid Cells
Cited by: 12
Author(s): Panayiota Papasavva, Nikoletta Papaioannou, Petros Patsali, Ryo Kurita, Yukio Nakamura, Maria Sitarou, Soteroulla Christou, Marina Kleanthous, Carsten W. Lederer
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2020.554759

Integrated Analysis of lncRNA–Mediated ceRNA Network in Lung Adenocarcinoma
Cited by: 90
Author(s): Xianxian Wu, Zhilin Sui, Hongdian Zhang, Ying Wang, Zhentao Yu
Software Mentions: 3
Published: almost 6 years ago

10.1111/ijfs.14403

Bioactive constituents, <i>in vitro</i> radical scavenging and antibacterial activities of selected <i>Apis mellifera</i> honey from Kenya
Cited by: 26
Author(s): Hosea O. Mokaya, Joel L. Bargul, Janet Irungu, H. Michael G. Lattorff
Software Mentions: 3
Published: almost 7 years ago

10.18632/aging.202353

Cell lineage-specific methylome and genome alterations in gout
Cited by: 6
Author(s): Chia‐Chun Tseng, Wei‐Ting Liao, Man-Chun Wong, Chung‐Jen Chen, Su-Chen Lee, Jeng-Hsien Yen, Shun‐Jen Chang
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0233251

Disentangling listening effort and memory load beyond behavioural evidence: Pupillary response to listening effort during a concurrent memory task
Cited by: 10
Author(s): Yue Zhang, Alexandre Lehmann, Mickael L. D. Deroche
Software Mentions: 3
Published: over 5 years ago

10.7150/ijbs.62168

Identification and Characterization of Alcohol-related Hepatocellular Carcinoma Prognostic Subtypes based on an Integrative N6-methyladenosine methylation Model
Cited by: 11
Author(s): Yue Zhang, Fanhong Zeng, Min Zeng, Xu Han, Lei Cai, Jiajun Zhang, Jun Weng, Yi Gao
Software Mentions: 3
Published: over 5 years ago

10.3389/fcell.2021.675411

Oncostatin M Maintains Naïve Pluripotency of mESCs by Tetraploid Embryo Complementation (TEC) Assay
Cited by: 0
Author(s): Xiaoying Ye, Chenglei Tian, Linlin Liu, Guofeng Feng, Kairang Jin, Haiying Wang, Jiyu Chen
Software Mentions: 3
Published: about 5 years ago

10.3389/fonc.2021.600243

Identification of Survival-Associated Gene Signature in Lung Cancer Coexisting With COPD
Cited by: 6
Author(s): Ti-Wei Miao, Long-Yi Du, Wei Xiao, Bing Mao, Yan Wang, Juanjuan Fu
Software Mentions: 3
Published: over 5 years ago

10.7150/ijbs.39046

Diagnostic, progressive and prognostic performance of m⁶A methylation RNA regulators in lung adenocarcinoma
Cited by: 38
Author(s): Zhizhi Zhuang, Liping Chen, Yuting Mao, Qun Zheng, Huiying Li, Yueyue Huang, Zijing Hu, Y. Jin
Software Mentions: 3
Published: over 6 years ago

10.1093/jxb/erw021

Copy number variation of a gene cluster encoding endopolygalacturonase mediates flesh texture and stone adhesion in peach
Cited by: 62
Author(s): Chao Gu, Lu Wang, Wei Wang, Hui Zhou, Baiquan Ma, Hongyu Zheng, Ting Fang, Collins Ogutu, Sornkanok Vimolmangkang, Yuepeng Han
Software Mentions: 3
Published: over 10 years ago

10.3389/fonc.2020.00979

High Expression of FAP in Colorectal Cancer Is Associated With Angiogenesis and Immunoregulation Processes
Cited by: 42
Author(s): Mairene Coto‐Llerena, Caner Ercan, Venkatesh Kancherla, Stephanie Taha‐Mehlitz, Serenella Eppenberger‐Castori, Savas D. Soysal, Charlotte K.Y. Ng, Martin Bolli, Markus von Flüe, Guillaume Nicolas, Luigi Terracciano, Melpomeni Fani, Salvatore Piscuoglio
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0151903

Inflammatory Kidney and Liver Tissue Response to Different Hydroxyethylstarch (HES) Preparations in a Rat Model of Early Sepsis
Cited by: 6
Author(s): Ralph C. Schimmer, Martin Urner, Stefanie Voigtsberger, Christa Booy, Birgit Roth Z’graggen, Beatrice Beck‐Schimmer, Martin Schläpfer
Software Mentions: 3
Published: over 10 years ago

10.1186/s12983-020-00354-0

Correlation of skull morphology and bite force in a bird-eating bat (Ia io; Vespertilionidae)
Cited by: 9
Author(s): Biye Shi, Yuze Wang, Lixin Gong, Yang Chang, Tong Liu, Xiaohui Zhao, Aiqing Lin, Jiang Feng, Tinglei Jiang
Software Mentions: 3
Published: over 6 years ago

10.3389/fcell.2021.739358

Macrophage-Related SPP1 as a Potential Biomarker for Early Lymph Node Metastasis in Lung Adenocarcinoma
Cited by: 22
Author(s): Bo Dong, Chunli Wu, Lan Huang, Yu Qi
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0250256

A biome-wide experiment to assess the effects of propagule size and treatment on the survival of Portulacaria afra (spekboom) truncheons planted to restore degraded subtropical thicket of South Africa
Cited by: 8
Author(s): Marius L. van der Vyver, Anthony Mills, Richard M. Cowling
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.7975

Phylogeographic analysis delimits three evolutionary significant units of least chipmunks in North America and identifies unique genetic diversity within the imperiled Peñasco population
Cited by: 3
Author(s): Emily E. Puckett, Sean M. Murphy, Gideon S. Bradburd
Software Mentions: 3
Published: about 5 years ago

10.1186/s13041-020-0561-1

Unveiling synapse pathology in spinal bulbar muscular atrophy by genome-wide transcriptome analysis of purified motor neurons derived from disease specific iPSCs
Cited by: 17
Author(s): Kazunari Onodera, Daisuke Shimojo, Yoshio Ishihara, Masato Yano, Fuyuki Miya, Haruhiko Banno, Naoko Kuzumaki, Takuji Ito, Ryosuke Okada, Bruno Herculano, Manabu Ohyama, Mari Yoshida, Tatsuhiko Tsunoda, Masahisa Katsuno, Manabu Doyu, Gen Sobue, Hideyuki Okano, Yohei Okada
Software Mentions: 3
Published: over 6 years ago

10.3390/foods10071592

Impact of Global Climate Change on the European Barley Market Requires Novel Multi-Method Approaches to Preserve Crop Quality and Authenticity
Cited by: 4
Author(s): Stefan G. Bindereif, Felix Rüll, Peter Kolb, Lucas Köberle, Holger Willms, Simon Steidele, Stephan Schwarzinger, Gerhard Gebauer
Software Mentions: 3
Published: about 5 years ago

10.3390/ijerph17155485

The Impact of COVID-19 Crisis upon the Consumer Buying Behavior of Fresh Vegetables Directly from Local Producers. Case Study: The Quarantined Area of Suceava County, Romania
Cited by: 105
Author(s): Alina Buţu, Ioan Sebastian Brumă, Lucian Tănasă, Steliana Rodino, Codrin Dinu Vasiliu, Sebastian Doboș, Marian Buţu
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-32314-4

Separation of blood microsamples by exploiting sedimentation at the microscale
Cited by: 22
Author(s): David Forchelet, Steve Béguin, Tatjana Sajic, Nasim Bararpour, Zoltan Pataky, Miguel Frias, Silke Grabherr, Marc Augsburger, Y. Liu, Mirren Charnley, Julien Déglon, Ruedi Aebersold, Aurélien Thomas, Philippe Renaud
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41420-021-00576-z

Identification of a prognostic ferroptosis-related lncRNA signature in the tumor microenvironment of lung adenocarcinoma
Cited by: 58
Author(s): Yugang Guo, Zhipeng Qu, Dandan Li, Fanghui Bai, Juan Xing, Qian Ding, Jiawei Zhou, Lunguang Yao, Qian Xu
Software Mentions: 3
Published: about 5 years ago

10.18632/oncotarget.12888

Dysregulated expression of microRNAs and mRNAs in pulmonary artery remodeling in ascites syndrome in broiler chickens
Cited by: 23
Author(s): Ping Liu, Fei Yang, Zhuang Yu, Qingyang Xiao, Cao H, Caiying Zhang, Tiancheng Wang, Huayuan Lin, Xiaoquan Guo, Guoliang Hu
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41420-020-00329-4

Gut microbiota patterns associated with somatostatin in patients undergoing pancreaticoduodenectomy: a prospective study
Cited by: 10
Author(s): Guanqun Li, Tao Zhang, Yang WeiGuang, Hao-Liang Zhong, Peng Xiao, Liwei Liu, Yongwei Wang, Hua Chen, Rui Kong, Gang Wang, Hongtao Tan, Xuewei Bai, Yilong Li, Le Li, Bei Sun
Software Mentions: 3
Published: almost 6 years ago

10.1002/ece3.6683

Effects of thermal and oxygen conditions during development on cell size in the common rough woodlice <i>Porcellio scaber</i>
Cited by: 9
Author(s): Andrzej Antoł, Anna Maria Łabęcka, Terézia Horváthová, Anna Sikorska, Natalia Szabla, Ulf Bauchinger, Jan Kozłowski, Marcin Czarnołęski
Software Mentions: 3
Published: almost 6 years ago

10.18632/oncotarget.18512

Identification of dysregulated long non-coding RNAs/microRNAs/mRNAs in TNM I stage lung adenocarcinoma
Cited by: 35
Author(s): Ziqiang Tian, Wen Pang Su, Yuefeng Zhang, Xinqiang Shi, Yao Zhu, Yong Xu, Huilai Lv, Guiying Wang
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0046334

A Genotypic Test for HIV-1 Tropism Combining Sanger Sequencing with Ultradeep Sequencing Predicts Virologic Response in Treatment-Experienced Patients
Cited by: 51
Author(s): Ron M. Kagan, Erik P. Johnson, Martin Siaw, Pinaki Biswas, Douglass Chapman, Zhaohui Su, Jamie L. Platt, Rick L. Pesano
Software Mentions: 3
Published: almost 14 years ago

10.3389/fonc.2020.575261

Multivariable Models Incorporating Multiparametric Magnetic Resonance Imaging Efficiently Predict Results of Prostate Biopsy and Reduce Unnecessary Biopsy
Cited by: 4
Author(s): Shuanbao Yu, Guodong Hong, Tao Jin, Yan Shen, Junxiao Liu, Biao Dong, Yafeng Fan, Ziyao Li, Ali Zhu, Xuepei Zhang
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-54569-1

Frequency Modulated Möbius Model Accurately Predicts Rhythmic Signals in Biological and Physical Sciences
Cited by: 19
Author(s): Cristina Rueda, Yolanda Larriba, Shyamal Peddada
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-021-90330-3

ADAMTS12 acts as a tumor microenvironment related cancer promoter in gastric cancer
Cited by: 11
Author(s): Yangming Hou, Yingjuan Xu, Danping Wu
Software Mentions: 3
Published: about 5 years ago

10.1038/s41421-018-0032-3

SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements
Cited by: 36
Author(s): Dang Vinh, Bernhard Strauß, Engin Cukuroglu, Iain C. Macaulay, Keng Boon Wee, Xiaoming Hu, Igor Ruiz de los Mozos, Caroline Lee, Andrew Harrison, Richard J. Butler, Sabine Dietmann, Jernej Ule, John C. Marioni, Christopher W. Smith, Jonathan Göke, M. Azim Surani
Software Mentions: 3
Published: about 8 years ago

10.3389/fnagi.2017.00249

DNA Methylation of Synaptic Genes in the Prefrontal Cortex Is Associated with Aging and Age-Related Cognitive Impairment
Cited by: 48
Author(s): Lara Ianov, Alberto Riva, Ashok Kumar, Thomas C. Foster
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0185227

The first transcriptome of Italian wall lizard, a new tool to infer about the Island Syndrome
Cited by: 4
Author(s): Martina Trapanese, Maria Buglione, Valeria Maselli, Simona Petrelli, Serena Aceto, Domenico Fulgione
Software Mentions: 3
Published: almost 9 years ago

10.1002/ece3.3058

Semi‐supervised determination of pseudocryptic morphotypes using observer‐free characterizations of anatomical alignment and shape
Cited by: 19
Author(s): Natasha Vitek, Carly L. Manz, Tingran Gao, Jonathan I. Bloch, Suzanne G. Strait, Douglas Boyer
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0157783

De Novo Transcriptome Analysis of the Common New Zealand Stick Insect Clitarchus hookeri (Phasmatodea) Reveals Genes Involved in Olfaction, Digestion and Sexual Reproduction
Cited by: 15
Author(s): Chen Wu, Ross N. Crowhurst, Alice B. Dennis, Victoria Twort, Shanlin Liu, Richard D. Newcomb, Howard A. Ross, Thomas R. Buckley
Software Mentions: 3
Published: about 10 years ago

10.1371/journal.pone.0075373

It’s Not Just Conflict That Motivates Killing of Orangutans
Cited by: 50
Author(s): Jacqueline Davis, Kerrie Mengersen, Nicola K. Abram, Marc Ancrenaz, Jessie A. Wells, Erik Meijaard
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12864-021-07407-6

High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes
Cited by: 14
Author(s): Ilhan Cem Duru, Florentina Ionela Bucur, Margarita Andreevskaya, Bahareh Nikparvar, Anne Ylinen, Leontina Grigore‐Gurgu, Tone Mari Rode, Peter Crauwels, Pia Laine, Lars Paulín, Trond Løvdal, Christian U. Riedel, Nadav Bar, Daniela Borda, Anca Loana Nicolau, Petri Auvinen
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.644612

The Diagnostic and Immunotherapeutic Value of CD248 in Renal Cell Carcinoma
Cited by: 10
Author(s): Keying Zhang, Chao Xu, Shaojie Li, Yao Jiang, Xiaolong Zhao, Shanjin Ma, Yu Liu, Yang Fa, Yan Wang, Ping Meng, Changhong Shi, Donghui Han, Weihong Wen, Weijun Qin
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.6593

Skull shape of a widely distributed, endangered marsupial reveals little evidence of local adaptation between fragmented populations
Cited by: 12
Author(s): Pietro Viacava, Simone P. Blomberg, Gabriele Sansalone, Matthew J. Phillips, Thomas Guillerme, Skye F. Cameron, Robbie S. Wilson, Vera Weisbecker
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13071-014-0583-6

A semi-automated magnetic capture probe based DNA extraction and real-time PCR method applied in the Swedish surveillance of Echinococcus multilocularis in red fox (Vulpes vulpes) faecal samples
Cited by: 58
Author(s): Mats Isaksson, Åsa Hagström, María Teresa Armúa-Fernández, Helene Wahlström, Erik Ågren, Andrea L. Miller, Anders Holmberg, Morten Lukacs, Adriano Casulli, Peter Deplazes, Mikael Juremalm
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-018-33433-8

Global pentapeptide statistics are far away from expected distributions
Cited by: 8
Author(s): Jarosław Poznański, Jan Topiński, Anna Muszewska, Konrad J. Dębski, Marta Hoffman-Sommer, Krzysztof Pawłowski, Marcin Grynberg
Software Mentions: 3
Published: almost 8 years ago

10.3389/fonc.2020.571167

Identification of CHRNB4 as a Diagnostic/Prognostic Indicator and Therapeutic Target in Human Esophageal Squamous Cell Carcinoma
Cited by: 3
Author(s): Nan Li, Kaisheng Liu, Shaowei Dong, Ling Ou, Jieling Li, Minshan Lai, Yue Wang, Yifan Bao, Huidong Shi, Wang Xiao, Shaoxiang Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2021.700521

A Comprehensive Analysis of Immune Constituents in Blood and Bronchoalveolar Lavage Allows Identification of an Immune Signature of Severe Asthma in Children
Cited by: 8
Author(s): Karine Adel‐Patient, Marta Grauso, Rola Abou‐Taam, Blanche Guillon, Céline Dietrich, François Machavoine, Mélanie Briard, Nicolas Garcelon, Hassan Faour, Antoine Neuraz, Christophe Delacourt, Thierry Jo Molina, Maria Leite‐de‐Moraes, Guillaume Lezmi
Software Mentions: 3
Published: about 5 years ago

10.1186/s13073-017-0419-z

Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas
Cited by: 59
Author(s): Davide Degli Esposti, Athéna Sklias, Sheila Coelho Soares Lima, Stéphanie Beghelli-de la Forest Divonne, Vincent Cahais, Nora Fernández-Jiménez, Marie-Pierre Cros, Szilvia Ecsedi, Cyrille Cuenin, Liacine Bouaoun, Graham Byrnes, Rosita Accardi, Anne Sudaka, Valérie Giordanengo, Héctor Hernandez-Vargas, Luís Felipe Ribeiro Pinto, Ellen Van Obberghen-Schilling, Zdenko Herceg
Software Mentions: 3
Published: over 9 years ago

10.1111/tpj.14632

Translational regulation contributes to the elevated CO ₂ response in two <i>Solanum</i> species
Cited by: 12
Author(s): Sharon B. Gray, Joel Rodríguez-Medina, Samuel Rusoff, Ted Toal, Kaisa Kajala, Daniel E. Runcie, Siobhán M. Brady
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-33750-y

Association of cervical microbial community with persistence, clearance and negativity of Human Papillomavirus in Korean women: a longitudinal study
Cited by: 30
Author(s): Selvaraj Arokiyaraj, Sang Soo Seo, Minji Kwon, Jae Kwan Lee, Mi Kyung Kim
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2021.655673

Exploring Biocontrol Agents From Microbial Keystone Taxa Associated to Suppressive Soil: A New Attempt for a Biocontrol Strategy
Cited by: 34
Author(s): Yanfen Zheng, Xiaobin Han, Dong‐Lin Zhao, Keke Wei, Yuan Yuan, Yiqiang Li, Minghong Liu, Chengsheng Zhang
Software Mentions: 3
Published: over 5 years ago

10.1111/1462-2920.13954

Application of stable‐isotope labelling techniques for the detection of active diazotrophs
Cited by: 40
Author(s): Roey Angel, Christopher Panhölzl, Raphael Gabriel, Craig W. Herbold, Wolfgang Wanek, Andreas Richter, Stephanie A. Eichorst, Dagmar Woebken
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2019.01396

Desiccation-Driven Senescence in the Resurrection Plant Xerophyta schlechteri (Baker) N.L. Menezes: Comparison of Anatomical, Ultrastructural, and Metabolic Responses Between Senescent and Non-Senescent Tissues
Cited by: 19
Author(s): Astrid Lillie Radermacher, S. Francois du Toit, Jill M. Farrant
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12864-015-2239-0

The neurotranscriptome of the Aedes aegypti mosquito
Cited by: 167
Author(s): Benjamin J. Matthews, Carolyn S. McBride, Matthew DeGennaro, Orion Despo, Leslie B. Vosshall
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms9091847

Impact of Maternal Intrapartum Antibiotics, and Caesarean Section with and without Labour on Bifidobacterium and Other Infant Gut Microbiota
Cited by: 15
Author(s): Yuan Yao Chen, Xin Zhao, Wolfgang Moeder, Hein Min Tun, Elinor Simons, Piushkumar J. Mandhane, Theo J. Moraes, Stuart E. Turvey, Padmaja Subbarao, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-021-07638-7

Structural landscape of the complete genomes of dengue virus serotypes and other viral hemorrhagic fevers
Cited by: 5
Author(s): Riccardo Delli Ponti, Marek Mutwil
Software Mentions: 3
Published: about 5 years ago

10.1186/s12864-019-6437-z

Anti-masculinization induced by aromatase inhibitors in adult female zebrafish
Cited by: 8
Author(s): Ciyong Lu, Li Wang, Qingqing Cheng, Yi‐Xuan Tu, Zifeng Yang, Runze Li, Zhihui Luo, Zhenxia Chen
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.00037

Genomic Identification of RNA Editing Through Integrating Omics Datasets and the Clinical Relevance in Hepatocellular Carcinoma
Cited by: 8
Author(s): Juan Chen, Lu Wang, Fangbin Wang, Jian Liu, Zhenyu Bai
Software Mentions: 3
Published: over 6 years ago

10.1016/j.celrep.2018.06.003

Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development
Cited by: 115
Author(s): Lucas J.T. Kaaij, Robin H. van der Weide, René F. Ketting, Elzo de Wit
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0233582

Modelling the developmental spliceosomal craniofacial disorder Burn-McKeown syndrome using induced pluripotent stem cells
Cited by: 16
Author(s): Karen L. Wood, Charlie F. Rowlands, Huw B. Thomas, Steven Paul Woods, Julieta O’Flaherty, Sofia Douzgou, Susan J. Kimber, William G. Newman, Raymond T. O’Keefe
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.63101

Investigation of Drosophila fruitless neurons that express Dpr/DIP cell adhesion molecules
Cited by: 12
Author(s): Savannah G Brovero, Julia C Fortier, Hongru Hu, Pamela C Lovejoy, Nicole R. Newell, Colleen M Palmateer, Ruei-Ying Tzeng, Pei-Tseng Lee, Kai Zinn, Michelle N. Arbeitman
Software Mentions: 3
Published: over 5 years ago

10.1093/g3journal/jkab024

Integration of high-density genetic mapping with transcriptome analysis uncovers numerous agronomic QTL and reveals candidate genes for the control of tillering in sorghum
Cited by: 3
Author(s): Rajanikanth Govindarajulu, Ashley N Hostetler, Yuguo Xiao, Srinivasa R. Chaluvadi, Margarita Mauro-Herrera, Muriel L. Siddoway, Clinton Whipple, Jeffrey L. Bennetzen, Katrien M. Devos, Andrew N. Doust, Jennifer Hawkins
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2019.00632

Understanding the Mechanistic Contribution of Herbal Extracts in Compound Kushen Injection With Transcriptome Analysis
Cited by: 21
Author(s): Hao Shen, Zhibo Qu, Yuka Harata-Lee, Thazin Nwe Aung, Jingang Cui, Wei Wang, R. Daniel Kortschak, David L. Adelson
Software Mentions: 3
Published: about 7 years ago

10.7150/ijbs.49243

Deciphering the genomic and lncRNA landscapes of aerobic glycolysis identifies potential therapeutic targets in pancreatic cancer
Cited by: 14
Author(s): Lili Zhu, Zheng Wu, Rongkun Li, Xin Xing, Yongsheng Jiang, Jun Li, Yahui Wang, Li-Peng Hu, Xu Wang, Weiting Qin, Yongwei Sun, Zhigang Zhang, Qin Yang, Shu‐Heng Jiang
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.707017

Small RNA Sequencing Identifies PIWI-Interacting RNAs Deregulated in Glioblastoma—piR-9491 and piR-12488 Reduce Tumor Cell Colonies In Vitro
Cited by: 3
Author(s): Michael Bartoš, František Siegl, Alena Kopková, Lenka Radová, Jan Oppelt, Marek Večeřa, Tomáš Kazda, Radim Jančálek, Michal Hendrych, Markéta Hermanová, Petra Kašparová, Zuzana Pleskacova, Václav Vybíhal, Pavel Fadrus, Martin Smrčka, Radek Lakomý, Radim Lipina, Tomáš Česák, Ondřej Slabý, Jiří Šána
Software Mentions: 3
Published: about 5 years ago

10.1186/s40635-015-0062-1

Tumor necrosis factor receptor 1 (TNFRI) for ventilator-associated pneumonia diagnosis by cytokine multiplex analysis
Cited by: 15
Author(s): Ignacio Martín‐Loeches, Lieuwe D. J. Bos, Pedro Póvoa, Paula Ramírez, Marcus J. Schultz, Antoni Torres, Antonio Artigas
Software Mentions: 3
Published: almost 11 years ago

10.3389/fonc.2020.01210

Identification of Energy Metabolism Genes for the Prediction of Survival in Hepatocellular Carcinoma
Cited by: 29
Author(s): Qinjunjie Chen, Fengwei Li, Yuzhen Gao, Gaoran Xu, Leilei Liang, Jing Xu
Software Mentions: 3
Published: about 6 years ago

10.3390/plants9070864

Exploring Mechanisms of Quantitative Resistance to Leptosphaeria maculans (Blackleg) in the Cotyledons of Canola (Brassica napus) Based on Transcriptomic and Microscopic Analyses
Cited by: 6
Author(s): Michelle Hubbard, Chun Zhai, Gary Peng
Software Mentions: 3
Published: about 6 years ago

10.1038/s41398-020-00948-6

Association between DNA methylation levels in brain tissue and late-life depression in community-based participants
Cited by: 23
Author(s): Anke Hüls, Chloe Robins, Karen N. Conneely, Philip L. De Jager, David A. Bennett, Michael P. Epstein, Thomas S. Wingo, Aliza P. Wingo
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0044260

Plasma Based Markers of [11C] PiB-PET Brain Amyloid Burden
Cited by: 82
Author(s): Steven J. Kiddle, Madhav Thambisetty, Andrew Simmons, Joanna Riddoch-Contreras, Abdul Hye, Eric Westman, Ian Pike, Malcolm Ward, Caroline Johnston, Michelle K. Lupton, Katie Lunnon, Hilkka Soininen, Iwona Kłoszewska, Magda Tsolaki, Bruno Vellas, Patrizia Mecocci, Simon Lovestone, Stephen J. Newhouse, Richard Dobson, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 3
Published: almost 14 years ago

10.3389/fcell.2020.611222

Construction and Validation of a Cell Cycle-Related Robust Prognostic Signature in Colon Cancer
Cited by: 8
Author(s): Zhiyuan Zhang, Jingwen Chen, Shichao Zhu, Dongqing Zhu, Jiacheng Xu, Guodong He
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.02591

Transcriptome and Resistance-Related Genes Analysis of Botrytis cinerea B05.10 Strain to Different Selective Pressures of Cyprodinil and Fenhexamid
Cited by: 8
Author(s): Xuegui Wang, Changwei Gong, Yun Zhao, Litao Shen
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12864-015-1461-0

GRACOMICS: software for graphical comparison of multiple results with omics data
Cited by: 7
Author(s): Minseok Seo, Joon Yoon, Taesung Park
Software Mentions: 3
Published: over 11 years ago

10.3390/ijms20030641

Placental CX3CL1 is Deregulated by Angiotensin II and Contributes to a Pro-Inflammatory Trophoblast-Monocyte Interaction
Cited by: 18
Author(s): Olivia Nonn, Jacqueline Guettler, Désirée Forstner, Sabine Maninger, Julianna Zadora, András Balogh, Alina Frolova, Andreas Glasner, Florian Herse, Martin Gauster
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2021.616469

Immune Cell Infiltration-Based Characterization of Triple-Negative Breast Cancer Predicts Prognosis and Chemotherapy Response Markers
Cited by: 10
Author(s): Yufei Lv, Dongxu Lv, Xiaoyi Lv, Ping Xing, Jianguo Zhang, Yafang Zhang
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-018-36125-5

Screening of 109 neuropeptides on ASICs reveals no direct agonists and dynorphin A, YFMRFamide and endomorphin-1 as modulators
Cited by: 17
Author(s): Anna Vyvers, Axel Schmidt, Dominik Wiemuth, Stefan Gründer
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-36877-0

Automated, high-throughput measurement of size and growth curves of small organisms in well plates
Cited by: 30
Author(s): James Duckworth, Tjalling Jager, Roman Ashauer
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms20194951

Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module
Cited by: 26
Author(s): Nicholas Gladman, Yinping Jiao, Young Koung Lee, Lifang Zhang, Ratan Chopra, Michael Regulski, Gloria Burow, Chad Hayes, Shawn A. Christensen, Lavanya Dampanaboina, Junping Chen, John J. Burke, Doreen Ware, Zhanguo Xin
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-90997-8

Fine scale analysis of malaria incidence in under-5: hierarchical Bayesian spatio-temporal modelling of routinely collected malaria data between 2012–2018 in Cameroon
Cited by: 3
Author(s): Célestin Danwang, Élie Khalil, Dorothy Achu, Marcelin Ateba, Moïse Abomabo, Jacob Souopgui, Mathilde De Keukeleire, Annie Robert
Software Mentions: 3
Published: about 5 years ago

10.1186/1471-2164-13-346

Integrative analysis of single nucleotide polymorphisms and gene expression efficiently distinguishes samples from closely related ethnic populations
Cited by: 11
Author(s): Hsin-Chou Yang, Peili Wang, Chien‐Wei Lin, Chien-Hsiun Chen, Chun-Houh Chen
Software Mentions: 3
Published: over 14 years ago

10.3390/ijms21207767

Biological and Clinical Changes in a Pediatric Series Treated with Off-Label JAK Inhibitors
Cited by: 15
Author(s): Alessia Pin, Alessandra Tesser, Serena Pastore, Valentina Moressa, Erica Valencic, Anna Arbo, Alessandra Maestro, Alberto Tommasini, Andrea Taddio
Software Mentions: 3
Published: almost 6 years ago

10.1002/pld3.240

Flood resilience loci <i>SUBMERGENCE 1</i> and <i>ANAEROBIC GERMINATION 1</i> interact in seedlings established underwater
Cited by: 10
Author(s): Rejbana Alam, Maureen Hummel, Euson Yeung, Anna M. Locke, John Carlos I. Ignacio, Miriam D. Baltazar, Zhenyu Jia, Ismail Am, Endang M. Septiningsih, Julia Bailey‐Serres
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2021.639368

Cycad-Weevil Pollination Symbiosis Is Characterized by Rapidly Evolving and Highly Specific Plant-Insect Chemical Communication
Cited by: 7
Author(s): Shayla Salzman, Damon J. Crook, Michael Calonje, Dennis Wm. Stevenson, Naomi E. Pierce, Robin Hopkins
Software Mentions: 3
Published: over 5 years ago

10.1038/srep42638

FocusHeuristics – expression-data-driven network optimization and disease gene prediction
Cited by: 16
Author(s): Markus Ernst, Yang Du, Gregor Warsow, Mohamed Hamed, Nicole Endlich, Karlhans Endlich, Hugo Murua Escobar, Lisa-Madeleine Sklarz, Sina Sender, Christian Junghanß, Steffen Möller, Georg Fuellen, Stephan Struckmann
Software Mentions: 3
Published: over 9 years ago

10.1007/s11282-017-0275-y

Combined photographic and ultrasonographic measurement of the ANB angle: a pilot study
Cited by: 7
Author(s): Alberto Di Blasio, Chiara Di Blasio, Giuseppe Pedrazzi, Diana Cassi, Marisabel Magnifico, Edoardo Manfredi, Mauro Gandolfini
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0181964

Regulation of type 1 diabetes development and B-cell activation in nonobese diabetic mice by early life exposure to a diabetogenic environment
Cited by: 15
Author(s): Alessandra Riva, Maja Wållberg, Francesca Ronchi, Richard M. R. Coulson, Andrew P. Sage, Lucy Thorne, Ian Goodfellow, Kathleen McCoy, Miyuki Azuma, Anne Cooke, Robert Busch
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2017.00322

isomiR2Function: An Integrated Workflow for Identifying MicroRNA Variants in Plants
Cited by: 9
Author(s): Kun Yang, Gaurav Sablok, Guang Hang Qiao, Qiang Nie, Xiaopeng Wen
Software Mentions: 3
Published: over 9 years ago

10.1101/2020.08.03.235242

Robotic High-Throughput Biomanufacturing and Functional Differentiation of Human Pluripotent Stem Cells
Cited by: 3
Author(s): Carlos A. Tristan, Pinar Ormanoglu, Jaroslav Slamecka, Claire Malley, Pei-Hsuan Chu, Vukasin M. Jovanovic, Yeliz Gedik, Charles Bonney, Elena Barnaeva, John C. Braisted, Sunil K. Mallanna, Dorjbal Dorjsuren, Michael J. Iannotti, Ty C. Voss, Sam Michael, Anton Simeonov, Ilyas Singeç
Software Mentions: 3
Published: about 6 years ago

10.3389/fgene.2019.00671

Pan-Cancer and Single-Cell Modeling of Genomic Alterations Through Gene Expression
Cited by: 21
Author(s): Daniele Mercatelli, F. Andrew Ray, Federico M. Giorgi
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pbio.3000689

Telomeric TART elements target the piRNA machinery in Drosophila
Cited by: 7
Author(s): Chris Ellison, Meenakshi S. Kagda, Weihuan Cao
Software Mentions: 3
Published: over 5 years ago

10.3389/fphar.2021.596535

The Widely Used Antihelmintic Drug Albendazole is a Potent Inducer of Loss of Heterozygosity
Cited by: 3
Author(s): Luiza Sheyla Evenni Porfírio Will Castro, Wietske Pieters, Mir Farshid Alemdehy, Muhammad Aslam, Olimpia Alessandra Buoninfante, Jonne A. Raaijmakers, Bas Pilzecker, Paul C.M. van den Berk, Hein te Riele, René H. Medema, Rozangela Curi Pedrosa, Heinz Jacobs
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0221178

Reported patterns of pregnancy termination from Demographic and Health Surveys
Cited by: 13
Author(s): David A. Sánchez-Páez, José Antonio Ortega
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.bioflm.2021.100051

Marinobacter atlanticus electrode biofilms differentially regulate gene expression depending on electrode potential and lifestyle
Cited by: 7
Author(s): Brian J. Eddie, Anthony P. Malanoski, Elizabeth L. Onderko, Daniel A. Phillips, Sarah M. Glaven
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1003574

Sexuality Generates Diversity in the Aflatoxin Gene Cluster: Evidence on a Global Scale
Cited by: 52
Author(s): Geromy G. Moore, Jacalyn L. Elliott, Ravinder Singh, Bruce W. Horn, Joe W. Dorner, Eric A. Stone, Sofía Noemí Chulze, Germán Barros, M. K. Naik, Graeme C. Wright, K. Hell, Ignazio Carbone
Software Mentions: 3
Published: almost 13 years ago

10.1186/1471-2164-14-471

Analysis and annotation of the hexaploid oat seed transcriptome
Cited by: 60
Author(s): Juan J. Gutiérrez-González, Zheng Jin Tu, David F. Garvin
Software Mentions: 3
Published: about 13 years ago

10.3389/fphar.2020.622658

Involvement of Circulating Exosomal MicroRNAs in Jian-Pi-Yi-Shen Formula Protection Against Adenine-Induced Chronic Kidney Disease
Cited by: 5
Author(s): Xinhui Liu, Siqi Liu, Denggui Luo, Shiying Huang, Fochang Wang, Bing Zhang, Yulian Chen, Lin Zheng, Jiandong Lu, Shunmin Li
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0003298

Topography and Land Cover of Watersheds Predicts the Distribution of the Environmental Pathogen Mycobacterium ulcerans in Aquatic Insects
Cited by: 13
Author(s): Kevin Carolan, Andrés Garchitorena, Gabriel E. García‐Peña, Aaron L. Morris, Jordi Landier, Arnaud Fontanet, Philippe Gall, Gaétan Texier, Laurent Marsollier, Rodolphe E. Gozlan, Sara Eyangoh, Danny Lo Seen, Jean‐François Guégan
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pbio.3000467

Dynamic enhancers control skeletal muscle identity and reprogramming
Cited by: 31
Author(s): Krithika Ramachandran, Madhavi D. Senagolage, Meredith A Sommars, Christopher R. Futtner, Yasuhiro Omura, Amanda L. Allred, Grant D. Barish
Software Mentions: 3
Published: almost 7 years ago

10.7150/jca.51493

Development and validation of nomogram with tumor microenvironment-related genes and clinical factors for predicting overall survival of endometrial cancer
Cited by: 3
Author(s): Qian Chen, Shu Wang, Jinghe Lang
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-020-3515-9

Comparative analysis of similarity measurements in miRNAs with applications to miRNA-disease association predictions
Cited by: 12
Author(s): Hailin Chen, Ruiyu Guo, Guanghui Li, Wei Zhang, Zuping Zhang
Software Mentions: 3
Published: over 6 years ago

10.1186/s13073-019-0694-y

A KHDC3L mutation resulting in recurrent hydatidiform mole causes genome-wide DNA methylation loss in oocytes and persistent imprinting defects post-fertilisation
Cited by: 41
Author(s): Hannah Demond, Zahra Anvar, Bahia Namavar Jahromi, Ángela Sparago, Ankit Verma, Maryam Davari, Luciano Calzari, Silvia Russo, Mojgan Akbarzadeh‐Jahromi, David Gabriel Monk, Simon Andrews, Andrea Riccio, Gavin Kelsey
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2020.01775

Cultivation of Clear Cell Renal Cell Carcinoma Patient-Derived Organoids in an Air-Liquid Interface System as a Tool for Studying Individualized Therapy
Cited by: 23
Author(s): Laura Kristin Esser, Vittorio Branchi, Sonia Leonardelli, Natalie Pelusi, Adolfo Simón, Niklas Klümper, Jörg Ellinger, Stefan Hauser, Maria A. Gonzalez‐Carmona, Manuel Ritter, Glen Kristiansen, Hubert Schorle, Michael Hölzel, Marieta Toma
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2021.647512

Transcriptomic and Mutational Analysis Discovering Distinct Molecular Characteristics Among Chinese Thymic Epithelial Tumor Patients
Cited by: 5
Author(s): Ning Liang, Lei Liu, Cheng Huang, Huan Liu, Chao Guo, Ji Li, Weiwei Wang, Nan Li, Rui Lin, Tao Wang, Lieming Ding, Li Mao, Shanqing Li
Software Mentions: 3
Published: almost 5 years ago