10.1371/journal.pone.0176131

InMAP: A model for air pollution interventions
Cited by: 120
Author(s): Christopher W. Tessum, Jason Hill, Julian Marshall
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0139590

Physiologically Shrinking the Solution Space of a Saccharomyces cerevisiae Genome-Scale Model Suggests the Role of the Metabolic Network in Shaping Gene Expression Noise
Cited by: 1
Author(s): Baofang Chi, Shiheng Tao, Yanlin Liu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0041977

PATHLOGIC-S: A Scalable Boolean Framework for Modelling Cellular Signalling
Cited by: 6
Author(s): Liam G. Fearnley, Lars K. Nielsen
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0113728

A Pragmatic Approach to Assess the Exposure of the Honey Bee (Apis mellifera) When Subjected to Pesticide Spray
Cited by: 34
Author(s): Yannick Poquet, Laurent Bodin, Marc Tchamitchian, Marion Fusellier, Barbara Giroud, Florent Lafay, Audrey Buleté, Sylvie Tchamitchian, Marianne Cousin, Michel Pélissier, Jean-Luc Brunet, Luc Belzunces
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0184435

Histone deacetylase regulates insulin signaling via two pathways in pancreatic β cells
Cited by: 20
Author(s): Yukina Kawada, Shun‐ichiro Asahara, Yumiko Sugiura, Ayaka Sato, Ayuko Furubayashi, Mitsuhiro Kawamura, Alberto Bartolomé, Emi Terashi-Suzuki, Toshihiro Takai, Ayumi Kanno, Maki Koyanagi‐Kimura, Tomokazu Matsuda, Naoko Hashimoto, Yoshiaki Kido
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0109478

LINE-1 Hypomethylation in Blood and Tissue Samples as an Epigenetic Marker for Cancer Risk: A Systematic Review and Meta-Analysis
Cited by: 121
Author(s): Martina Barchitta, Annalisa Quattrocchi, Andrea Maugeri, Manlio Vinciguerra, Antonella Agodi
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0025634

GSTP1 DNA Methylation and Expression Status Is Indicative of 5-aza-2′-Deoxycytidine Efficacy in Human Prostate Cancer Cells
Cited by: 47
Author(s): Karen Chiam, Margaret M. Centenera, Lisa M. Butler, Wayne D. Tilley, Tina Bianco‐Miotto
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0014060

Gemcitabine Functions Epigenetically by Inhibiting Repair Mediated DNA Demethylation
Cited by: 42
Author(s): Andrea Schäfer, Lars Schomacher, Guillermo Barreto, Gabi Döderlein, Christof Niehrs
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0183357

Terminal differentiation of T cells is strongly associated with CMV infection and increased in HIV-positive individuals on ART and lifestyle matched controls
Cited by: 34
Author(s): Thijs Booiman, Ferdinand W. N. M. Wit, Arginell F. Girigorie, Irma Maurer, Davide De Francesco, Caroline Sabin, Agnes M. Harskamp, Maria Prins, Claudio Franceschi, Steven G. Deeks, Alan Winston, Peter Reiss, Neeltje A. Kootstra
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0115607

Delayed Contrast Enhancement Imaging of a Murine Model for Ischemia Reperfusion with Carbon Nanotube Micro-CT
Cited by: 2
Author(s): Laurel Burk, Ko Han Wang, John Matthew Wait, Eunice Kang, Monte S. Willis, Jianping Lu, Otto Zhou, Yueh Z. Lee
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0113820

CONSTRICTOR: Constraint Modification Provides Insight into Design of Biochemical Networks
Cited by: 8
Author(s): Keesha E. Erickson, Ryan T. Gill, Anushree Chatterjee
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0239820

Structural equation modeling approach to explore the influence of childhood maltreatment in adults
Cited by: 9
Author(s): Kuniyoshi Toyoshima, Takeshi Inoue, Jiro Masuya, Yota Fujimura, Shinji Higashi, Hajime Tanabe, Ichiro Kusumi
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0070386

Hypomethylation of Alu Elements in Post-Menopausal Women with Osteoporosis
Cited by: 63
Author(s): Pornrutsami Jintaridth, Rungsunn Tungtrongchitr, Sangchai Preutthipan, Apiwat Mutirangura
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0087494

Genome-Scale NAD(H/+) Availability Patterns as a Differentiating Feature between Saccharomyces cerevisiae and Scheffersomyces stipitis in Relation to Fermentative Metabolism
Cited by: 6
Author(s): A Acevedo, Germán Aroca, Raúl Conejeros
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0025913

Spreading of Alu Methylation to the Promoter of the MLH1 Gene in Gastrointestinal Cancer
Cited by: 16
Author(s): Xiyin Wang, Jing Fan, Dong Liu, Shanlin Fu, Sigurður Ingvarsson, Huiping Chen
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0140550

Control of Blood Pressure and Risk Attenuation: Post Trial Follow-Up of Randomized Groups
Cited by: 6
Author(s): Tazeen H. Jafar, Imtiaz Jehan, Lixia Feng, Sylvaine Barbier, Muhammad Islam, Rasool Bux, Aamir Hameed Khan, Nivedita Nadkarni, Neil Poulter, Nish Chaturvedi, Shah Ebrahim
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0060105

Molecular and Clinical Studies in 138 Japanese Patients with Silver-Russell Syndrome
Cited by: 49
Author(s): Tomoko Fuke, Seiji Mizuno, Toshiro Nagai, Tomonobu Hasegawa, Reiko Horikawa, Yoko Miyoshi, Koji Muroya, Tatsuro Kondoh, Chikahiko Numakura, Seiji Sato, Kazuhiko Nakabayashi, Chiharu Tayama, Kenichiro Hata, Shinichiro Shinzaki, Kazuo Matsubara, Masayo Kagami, Kazuki Yamazawa, Tsutomu Ogata
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0203311

Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis
Cited by: 7
Author(s): Santhust Kumar, Saurabh Mahajan, Shaili Jain
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0004788

DNA Methylation of the ABO Promoter Underlies Loss of ABO Allelic Expression in a Significant Proportion of Leukemic Patients
Cited by: 52
Author(s): Tina Bianco‐Miotto, Damian J. Hussey, Tanya K. Day, Denise S. O’Keefe, Alexander Dobrovic
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0252302

An in vitro study of dual drug combinations of anti-viral agents, antibiotics, and/or hydroxychloroquine against the SARS-CoV-2 virus isolated from hospitalized patients in Surabaya, Indonesia
Cited by: 11
Author(s): Purwati Purwati, Andang Miatmoko, - Nasronudin, Eryk Hendrianto, Deya Karsari, Aristika Dinaryanti, Nora Ertanti, Igo Syaiful Ihsan, Disca Sandyakala Purnama, Tri Pudy Asmarawati, Erika Marfiani, Yulistiani Yulistiani, Alfian Nur Rosyid, Prastuti Asta Wulaningrum, Herley Windo Setiawan, Imam Siswanto, Ni Nyoman Tri Puspaningsih
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0164158

Sex and Tissue Specificity of Peg3 Promoters
Cited by: 7
Author(s): Bambarendage P. U. Perera, Joomyeong Kim
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0005809

Epigenetic Regulation of Adipocyte Differentiation by a Rho Guanine Nucleotide Exchange Factor, WGEF
Cited by: 25
Author(s): Takuro Horii, Sumiyo Morita, Masashi Kimura, Izuho Hatada
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0010338

HOXB13, a Target of DNMT3B, Is Methylated at an Upstream CpG Island, and Functions as a Tumor Suppressor in Primary Colorectal Tumors
Cited by: 62
Author(s): Kalpana Ghoshal, Tasneem Motiwala, Rainer Claus, Pearlly S. Yan, Huban Kutay, Jharna Datta, Sarmila Majumder, Shoumei Bai, Arnab Majumder, Tim H.M. Huang, Christoph Plass, Samson T. Jacob
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0004556

RTA Promoter Demethylation and Histone Acetylation Regulation of Murine Gammaherpesvirus 68 Reactivation
Cited by: 19
Author(s): Zhangsheng Yang, Haidong Tang, Hai Huang, Hongyu Deng
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0111686

Computational Analysis of Reciprocal Association of Metabolism and Epigenetics in the Budding Yeast: A Genome-Scale Metabolic Model (GSMM) Approach
Cited by: 11
Author(s): Ali Salehzadeh‐Yazdi, Yazdan Asgari, Ali Akbar Saboury, Ali Masoudi‐Nejad
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0204284

Split inactivated COBRA vaccine elicits protective antibodies against H1N1 and H3N2 influenza viruses
Cited by: 20
Author(s): James D. Allen, Satyajit Ray, Ted M. Ross
Software Mentions: 1
Published: almost 8 years ago

10.1098/rstb.2016.0144

Climate change, climatic variation and extreme biological responses
Cited by: 68
Author(s): Graham Palmer, Philip J. Platts, Tom Brereton, Jason W. Chapman, Calvin Dytham, Richard Fox, James W. Pearce‐Higgins, David B. Roy, Jane K. Hill, Chris D. Thomas
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0072150

ReacKnock: Identifying Reaction Deletion Strategies for Microbial Strain Optimization Based on Genome-Scale Metabolic Network
Cited by: 35
Author(s): Zixiang Xu, Ping Zheng, Jibin Sun, Yanhe Ma
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0134412

Promoter Hypermethylation and Decreased Expression of Syncytin-1 in Pancreatic Adenocarcinomas
Cited by: 10
Author(s): Qin Lu, Jinping Li, Christopher Senkowski, Zuoqing Tang, Jianhao Wang, Tianhe Huang, Xue Wang, Karen Terry, Steven T. Brower, Wayne C. Glasgow, Haibin Chen, Shi‐Wen Jiang
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0033024

Sequences Sufficient for Programming Imprinted Germline DNA Methylation Defined
Cited by: 13
Author(s): Yoon Jung Park, Herry Herman, Ying Gao, Anders M. Lindroth, Benjamin Hu, Patrick J. Murphy, James R. Putnam, Paul D. Soloway
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0034850

Differential Epigenetic Regulation of TOX Subfamily High Mobility Group Box Genes in Lung and Breast Cancers
Cited by: 52
Author(s): Mathewos Tessema, Christin M. Yingling, Marcie J. Grimes, Cynthia L. Thomas, Yushi Liu, Shuguang Leng, Nancy E. Joste, Steven A. Belinsky
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0010594

Investigating the Epigenetic Effects of a Prototype Smoke-Derived Carcinogen in Human Cells
Cited by: 17
Author(s): Stefania Tommasi, Sang-in Kim, Xueyan Zhong, Xiwei Wu, Gerd P. Pfeifer, Ahmad Besaratinia
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0044904

Beeswax as Dental Filling on a Neolithic Human Tooth
Cited by: 67
Author(s): Federico Bernardini, Claudio Tuniz, Alfredo Coppa, Lucia Mancini, Diego Dreossi, Diane Eichert, Gianluca Turco, Matteo Biasotto, F. Terrasi, N. De Cesare, Quan Hua, Vladimir Levchenko
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0096994

Transition of LINE-1 DNA Methylation Status and Altered Expression in First and Third Trimester Placentas
Cited by: 21
Author(s): Zhiming He, Jinping Li, Yi L. Hwa, Brian C. Brost, Qun Fang, Shi‐Wen Jiang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0045635

Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
Cited by: 101
Author(s): Ines Thiele, Ronan M. T. Fleming, Richard Que, Aarash Bordbar, Dinh Diep, Bernhard Ø. Palsson
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0012383

Modeling Core Metabolism in Cancer Cells: Surveying the Topology Underlying the Warburg Effect
Cited by: 71
Author(s): Osbaldo Resendis‐Antonio, Alberto Checa, Sergio Encarnación
Software Mentions: 1
Published: almost 16 years ago

10.3390/cancers7030834

Claudin11 Promoter Hypermethylation Is Frequent in Malignant Melanoma of the Skin, but Uncommon in Nevus Cell Nevi
Cited by: 19
Author(s): Sara K. Walesch, Antje Richter, Peter Helmbold, Reinhard Dammann
Software Mentions: 1
Published: about 11 years ago

10.3390/cancers8030026

Aberrant Promoter Methylation of the Tumour Suppressor RASSF10 and Its Growth Inhibitory Function in Breast Cancer
Cited by: 23
Author(s): Antje Richter, Sara K. Walesch, Reinhard Dammann
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers5041566

Aberrant Promoter Hypermethylation of RASSF Family Members in Merkel Cell Carcinoma
Cited by: 18
Author(s): Antje Richter, Tanja Haag, Sara K. Walesch, Peter Herrmann-Trost, Wolfgang Ch. Marsch, Heinz Kutzner, Peter Helmbold, Reinhard Dammann
Software Mentions: 1
Published: almost 13 years ago

10.3390/cancers10100367

Molecular Scoring of Hepatocellular Carcinoma for Predicting Metastatic Recurrence and Requirements of Systemic Chemotherapy
Cited by: 22
Author(s): Naoshi Nishida, Takafumi Nishimura, Toshimi Kaido, Kosuke Minaga, Kentaro Yamao, Ken Kamata, Hiroshi Ida, Satoru Hagiwara, Yasunori Minami, Toshiharu Sakurai, Tomohiro Watanabe, Masatoshi Kudo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0228016

A data-driven classification of 3D foot types by archetypal shapes based on landmarks
Cited by: 11
Author(s): Aleix Alcacer, Irene Epifanio, M. Victoria Ibáñez, Amelia Simó, Alfredo Ballester
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-018-1153-1

MicroRNA-139-3p regulates osteoblast differentiation and apoptosis by targeting ELK1 and interacting with long noncoding RNA ODSM
Cited by: 59
Author(s): Yixuan Wang, Ke Wang, Zebing Hu, Hua Zhou, Lijun Zhang, Han Wang, Gaozhi Li, Shu Zhang, Xinsheng Cao, Fei Shi
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41419-020-2574-1

Bone-targeted lncRNA OGRU alleviates unloading-induced bone loss via miR-320-3p/Hoxa10 axis
Cited by: 19
Author(s): Ke Wang, Yixuan Wang, Zebing Hu, Lijun Zhang, Gaozhi Li, Lei Dang, Yingjun Tan, Xinsheng Cao, Fei Shi, Shu Zhang, Ge Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1788-6

MEG3-derived miR-493-5p overcomes the oncogenic feature of IGF2-miR-483 loss of imprinting in hepatic cancer cells
Cited by: 34
Author(s): Luc Gailhouste, Lee Chuen Liew, Ken Yasukawa, Izuho Hatada, Yasuhito Tanaka, Takashi Kato, Hitoshi Nakagama, Takahiro Ochiya
Software Mentions: 1
Published: about 7 years ago

10.1038/s41420-021-00515-y

Epigenetic reprogramming promotes the antiviral action of IFNα in HBV-infected cells
Cited by: 2
Author(s): Luc Gailhouste, Masayuki Sudoh, Xian‐Yang Qin, Koichi Watashi, Takaji Wakita, Takahiro Ochiya, Tomokazu Matsuura, Yutaka Furutani
Software Mentions: 1
Published: about 5 years ago

10.1016/j.celrep.2019.10.035

Integrated Analyses of Microbiome and Longitudinal Metabolome Data Reveal Microbial-Host Interactions on Sulfur Metabolism in Parkinson’s Disease
Cited by: 97
Author(s): Johannes Hertel, Amy C. Harms, Almut Heinken, Federico Baldini, Cyrille C. Thinnes, Enrico Glaab, Daniel A. Vasco, Maik Pietzner, Isobel D. Stewart, Nicholas J. Wareham, Claudia Langenberg, Claudia Trenkwalder, Rejko Krüger, Thomas Hankemeier, Ronan M. T. Fleming, Brit Mollenhauer, Ines Thiele
Software Mentions: 1
Published: almost 7 years ago

10.3390/cells9092017

Aberrant Methylation of LINE-1 Transposable Elements: A Search for Cancer Biomarkers
Cited by: 27
Author(s): Anastasia A. Ponomaryova, Elena Y. Rykova, Polina Gervas, Н. В. Чердынцева, Ilgar Z. Mamedov, Tatyana Azhikina
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13148-016-0191-8

Different definitions of CpG island methylator phenotype and outcomes of colorectal cancer: a systematic review
Cited by: 80
Author(s): Min Jia, Xu Gao, Yan Zhang, Michael Hoffmeister, Hermann Brenner
Software Mentions: 1
Published: over 10 years ago

10.1186/s13148-015-0096-y

Genetic and epigenetic alterations of netrin-1 receptors in gastric cancer with chromosomal instability
Cited by: 8
Author(s): Keisuke Toda, Takeshi Nagasaka, Yuzo Umeda, Takehiro Tanaka, Takashi Kawai, Tomokazu Fuji, Fumitaka Taniguchi, Kohichiroh Yasui, Naohiro Kubota, Yuko Takehara, Hiroshi Tazawa, Shunsuke Kagawa, Dawei Sun, Naoshi Nishida, Ajay Goel, Toshiyoshi Fujiwara
Software Mentions: 1
Published: about 11 years ago

10.1186/1868-7083-6-29

Concomitant downregulation of the imprinted genes DLK1 and MEG3 at 14q32.2 by epigenetic mechanisms in urothelial carcinoma
Cited by: 32
Author(s): Annemarie Greife, Judith Knievel, Teodora Ribarska, Günter Niegisch, Wolfgang A. Schulz
Software Mentions: 1
Published: over 11 years ago

10.1186/s13148-019-0643-z

Increased methylation upstream of the MEG3 promotor is observed in acute myeloid leukemia patients with better overall survival
Cited by: 17
Author(s): Zachariah Payne Sellers, Łukasz Bołkuń, Janusz Kłoczko, Marzena Wojtaszewska, Krzysztof Lewandowski, Marcin Moniuszko, Mariusz Z. Ratajczak, Gabriela Schneider
Software Mentions: 1
Published: over 7 years ago

10.1186/s13148-019-0712-3

Placenta-specific epimutation at H19-DMR among common pregnancy complications: its frequency and effect on the expression patterns of H19 and IGF2
Cited by: 17
Author(s): Yûko Yamaguchi, Chiharu Tayama, Junko Tomikawa, Rina Akaishi, Hiromi Kamura, Katsuyoshi Matsuoka, Norio Wake, Hisanori Minakami, Kiyoko Kato, Takahiro Yamada, Kazuhiko Nakabayashi, Kenichiro Hata
Software Mentions: 1
Published: about 7 years ago

10.1186/s13148-017-0393-8

Epigenetic response of imprinted domains during carcinogenesis
Cited by: 3
Author(s): Corey L. Bretz, Ingeborg M. Langohr, Joomyeong Kim
Software Mentions: 1
Published: almost 9 years ago

10.1186/2045-3329-2-3

Paratesticular desmoplastic small round cell tumour: an unusual tumour with an unusual fusion; cytogenetic and molecular genetic analysis combining RT-PCR and COBRA-FISH
Cited by: 11
Author(s): Vincent Cliteur, Károly Szuhai, Hans J. Baelde, J. van Egmond-van Dam, Hans Gelderblom, Pancras C.W. Hogendoorn
Software Mentions: 1
Published: over 14 years ago

10.1016/j.csbj.2021.08.034

Sustainable metabolic engineering for sustainability optimisation of industrial biotechnology
Cited by: 11
Author(s): Egils Stalidzāns, Elīna Dāce
Software Mentions: 1
Published: over 5 years ago

10.2174/138920212801619269

Application of Top-Down and Bottom-up Systems Approaches in Ruminant Physiology and Metabolism
Cited by: 45
Author(s): Khuram Shahzad, Juan J. Loor
Software Mentions: 1
Published: about 14 years ago

10.1016/j.dib.2020.106242

Genome-wide methylation data from R1 (wild-type) and the transgenic Dnmt1 mouse embryonic stem cells overexpressing DNA methyltransferase 1 (DNMT1)
Cited by: 3
Author(s): Sonal Saxena, Sumana Choudhury, K. Naga Mohan
Software Mentions: 1
Published: almost 6 years ago

10.1002/elsc.202100003

Interrogation of the perturbed gut microbiota in gouty arthritis patients through in silico metabolic modeling
Cited by: 11
Author(s): Michael A. Henson
Software Mentions: 1
Published: about 5 years ago

10.1289/ehp.1307047

DNA Methylation in Oocytes and Liver of Female Mice and Their Offspring: Effects of High-Fat-Diet–Induced Obesity
Cited by: 124
Author(s): Zhao‐Jia Ge, Shi‐Ming Luo, Fei Lin, Qiu‐Xia Liang, Lin Huang, Yanchang Wei, Yi Hou, Zhiming Han, Heide Schatten, Qing‐Yuan Sun
Software Mentions: 1
Published: over 12 years ago

10.1289/ehp.1002153

Low Doses of the Carcinogen Furan Alter Cell Cycle and Apoptosis Gene Expression in Rat Liver Independent of DNA Methylation
Cited by: 40
Author(s): Tao Chen, Angela Mally, Sibel Özden, J.K. Chipman
Software Mentions: 1
Published: almost 16 years ago

10.1186/s13072-016-0104-2

Widespread recovery of methylation at gametic imprints in hypomethylated mouse stem cells following rescue with DNMT3A2
Cited by: 7
Author(s): Avinash Thakur, Sarah Jayne Mackin, Rachelle E Irwin, Karla O’Neill, Gareth Pollin, Colum P. Walsh
Software Mentions: 1
Published: over 9 years ago

10.1002/epi4.12462

Sleep‐wake characteristics in a mouse model of severe traumatic brain injury: Relation to posttraumatic epilepsy
Cited by: 11
Author(s): Sai Sruthi Konduru, Eli Wallace, Jesse A. Pfammatter, Paulo V Rodrigues, Mathew V. Jones, Rama Maganti
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.2-45.v1

UVB irradiation does not directly induce detectable changes of DNA methylation in human keratinocytes
Cited by: 20
Author(s): Christoph Lahtz, Sangin Kim, Steven Bates, Arthur X. Li, Xiwei Wu, Gerd P. Pfeifer
Software Mentions: 1
Published: over 13 years ago

10.1093/femsre/fuab008

Genetic and metabolic engineering challenges of C1-gas fermenting acetogenic chassis organisms
Cited by: 25
Author(s): Barbara Bourgade, Nigel P. Minton, Mahmudul Islam
Software Mentions: 1
Published: over 5 years ago

10.3389/fnbeh.2015.00288

Investigating decision rules with a new experimental design: the EXACT paradigm
Cited by: 0
Author(s): Valerio Biscione, Christopher M. Harris
Software Mentions: 1
Published: almost 11 years ago

10.3389/fnbeh.2015.00315

I Plan Therefore I Choose: Free-Choice Bias Due to Prior Action-Probability but Not Action-Value
Cited by: 5
Author(s): Lalitta Suriya-Arunroj, Alexander Gail
Software Mentions: 1
Published: over 10 years ago

10.3389/fbioe.2019.00480

Comparison of Three Xylose Pathways in Pseudomonas putida KT2440 for the Synthesis of Valuable Products
Cited by: 71
Author(s): Isabel Bator, Andreas Wittgens, Frank Rosenau, Till Tiso, Lars M. Blank
Software Mentions: 1
Published: over 6 years ago

10.3389/fbioe.2015.00047

A Computational Analysis of Stoichiometric Constraints and Trade-Offs in Cyanobacterial Biofuel Production
Cited by: 40
Author(s): Henning Knoop, Ralf Steuer
Software Mentions: 1
Published: over 11 years ago

10.3389/fcvm.2016.00010

Understanding the Causes and Implications of Endothelial Metabolic Variation in Cardiovascular Disease through Genome-Scale Metabolic Modeling
Cited by: 9
Author(s): Sarah McGarrity, Haraldur Halldórsson, Sirus Palsson, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2020.532492

Reconstruction of Eriocheir sinensis Y-organ Genome-Scale Metabolic Network and Differential Analysis After Eyestalk Ablation
Cited by: 3
Author(s): Bin Wang, Jiarui Yang, Chenchen Gao, Tong Hao, Jingjing Li, Jinsheng Sun
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00645

Argonaute 4 as an Effector Protein in RNA-Directed DNA Methylation in Human Cells
Cited by: 17
Author(s): Kanwalat Chalertpet, Piyapat Pin‐on, Chatchawit Aporntewan, Maturada Patchsung, Praewphan Ingrungruanglert, Nipan Israsena, Apiwat Mutirangura
Software Mentions: 1
Published: about 7 years ago

10.1002/clc.22721

Geographic variation and risk factors for systemic and limb ischemic events in patients with symptomatic peripheral artery disease: Insights from the <scp>REACH</scp> Registry
Cited by: 30
Author(s): Jérémie Abtan, Deepak L. Bhatt, Yedid Elbez, Emmanuel Sorbets, Kim A. Eagle, Christopher M. Reid, Iris Baumgartner, David Wormser, Mary E. Hanson, Hakima Hannachi, Puneet K. Singhal, Philippe Gabríel Steg, Grégory Ducrocq
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2015.00632

Reconstruction and in silico analysis of an Actinoplanes sp. SE50/110 genome-scale metabolic model for acarbose production
Cited by: 7
Author(s): Yali Wang, Nan Xu, Chao Ye, Li Liu, Zhongping Shi, Jing Wu
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2017.00638

Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis
Cited by: 21
Author(s): Aida Kalantari, Tao Chen, Boyang Ji, Ivan Andreas Stančik, Vaishnavi Ravikumar, Damjan Franjević, Claire Saulou‐Bérion, Anne Goelzer, Ivan Mijaković
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.00597

Approaches to Computational Strain Design in the Multiomics Era
Cited by: 16
Author(s): Peter C. St. John, Yannick J. Bomble
Software Mentions: 1
Published: over 7 years ago

10.1002/clc.23505

Use of risk scores to identify lower and higher risk subsets among <scp>COMPASS‐eligible</scp> patients with chronic coronary syndromes. Insights from the <scp>CLARIFY</scp> registry
Cited by: 1
Author(s): Arthur Darmon, Grégory Ducrocq, Adam Jasilek, Laurent J. Feldman, Emmanuel Sorbets, Roberto Ferrari, Ian Ford, Jean‐Claude Tardif, Michał Tendera, Kim Fox, Philippe Gabríel Steg
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0147448

Comparison of Optical Coherence Tomography Measurement Reproducibility between Children and Adults
Cited by: 18
Author(s): Hyun‐Tai Chung, Young Keun Han, Sohee Oh, Seok Hwan Kim
Software Mentions: 1
Published: over 10 years ago

10.1111/cpf.12533

Associations of left atrial volumes and Doppler filling indices with left atrial function in acute myocardial infarction
Cited by: 0
Author(s): Egil Henriksen, Jonas Selmeryd, Pär Hedberg
Software Mentions: 1
Published: about 8 years ago

10.3758/s13415-018-00672-1

Neural reward-related reactions to monetary gains for self and charity
Cited by: 12
Author(s): Jochem Spaans, Susan Peters, Eveline A. Crone
Software Mentions: 1
Published: over 7 years ago

10.1186/s40662-020-00212-4

Morphological features of anterior segment: factors influencing intraocular pressure after cataract surgery in nanophthalmos
Cited by: 4
Author(s): Qiang Lü, Wenwen He, Yi Lü, Xiangjia Zhu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnhum.2020.587763

Caudate Functional Connectivity Associated With Weight Change in Adolescents
Cited by: 7
Author(s): Yuko Nakamura, Sachiyo Ozawa, Shinsuke Koike
Software Mentions: 1
Published: almost 6 years ago

10.3389/fneur.2021.583027

Facilitative Effects of Transcranial Direct Current Stimulation on Semantic Memory Examined by Text-Mining Analysis in Patients With Schizophrenia
Cited by: 1
Author(s): Chika Sumiyoshi, Zui Narita, Takuma Inagawa, Yuji Yamada, Kazuki Sueyoshi, Yumi Hasegawa, Aya Shirama, Ryota Hashimoto, Tomiki Sumiyoshi
Software Mentions: 1
Published: over 5 years ago

10.3389/fpsyg.2020.01840

Toward a Dimensional Assessment of Externalizing Disorders in Children: Reliability and Validity of a Semi-Structured Parent Interview
Cited by: 7
Author(s): Ann-Kathrin Thöne, Anja Görtz-Dorten, Paula Altenberger, Christina Dose, Nina Geldermann, Christopher Hautmann, Lea Teresa Jendreizik, Anne-Katrin Treier, Elena von Wirth, Tobias Banaschewski, Daniel Brandeis, Sabina Millenet, Sarah Hohmann, Katja Becker, Johanna Ketter, Johannes Hebebrand, Jasmin Wenning, Martin Holtmann, Tanja Legenbauer, Michael Huß, Marcel Romanos, Thomas Jans, Julia Geißler, Luise Poustka, Henrik Uebel-von Sandersleben, Tobias Renner, Ute Dürrwächter, Manfred Döpfner
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0170173

Structural changes on a molecular basis of canola meal by conditioning temperature and time during pelleting process in relation to physiochemical (energy and protein) properties relevant to ruminants
Cited by: 8
Author(s): Xuewei Huang, Huihua Zhang, Peiqiang Yu
Software Mentions: 1
Published: over 9 years ago

10.3389/fpsyg.2020.00912

Application of the Chinese Version of the BIS/BAS Scales in Participants With a Substance Use Disorder: An Analysis of Psychometric Properties and Comparison With Community Residents
Cited by: 5
Author(s): Qingqing Che, Pei-Wen Yang, Huiyuan Gao, Meizhu Liu, Jun Zhang, Taisheng Cai
Software Mentions: 1
Published: over 6 years ago

10.3389/fnsys.2020.614248

Perceptual Behavior Depends Differently on Pupil-Linked Arousal and Heartbeat Dynamics-Linked Arousal in Rats Performing Tactile Discrimination Tasks
Cited by: 8
Author(s): Yuxiang Liu, Shreya Narasimhan, Brian J. Schriver, Qi Wang
Software Mentions: 1
Published: over 5 years ago

10.1007/s10803-020-04748-1

Development and Psychometric Properties of a New Questionnaire to Assess Mental Health and Concerning Behaviors in Children and Young People with Autism Spectrum Disorder (ASD): The Assessment of Concerning Behavior (ACB) Scale
Cited by: 6
Author(s): Joanne Tarver, Silia Vitoratou, Mathilde Mastroianni, Natalie Heaney, Eleanor Bennett, Felicity Gibbons, Federico Fiori, Michael Absoud, Lakshmi Ramasubramanian, Emily Simonoff, Paramala Santosh
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-27651-3

Aggressive desert goby males also court more, independent of the physiological demands of salinity
Cited by: 1
Author(s): Topi K. Lehtonen, P. Andreas Svensson, Bob B. M. Wong
Software Mentions: 1
Published: about 8 years ago

10.3390/molecules25122892

Fatty Acid and Stable Carbon Isotope Composition of Slovenian Milk: Year, Season, and Regional Variability
Cited by: 5
Author(s): Doris Potočnik, Lidija Strojnik, Tome Eftimov, Alenka Levart, Nives Ogrinc
Software Mentions: 1
Published: about 6 years ago

10.3390/s21113774

Evaluation of a Low-Cost Commercial Actigraph and Its Potential Use in Detecting Cultural Variations in Physical Activity and Sleep
Cited by: 16
Author(s): Pavlos Topalidis, Cristina Florea, Esther-Sevil Eigl, Anton Kurapov, Carlos Alberto Beltran Leon, Manuel Schabus
Software Mentions: 1
Published: about 5 years ago

10.3390/jfb9010009

Trapezium Bone Density—A Comparison of Measurements by DXA and CT
Cited by: 4
Author(s): Sebastian Breddam Mosegaard, Kamille Breddam Mosegaard, Nadia Bouteldja, Torben Bæk Hansen, Maiken Stilling
Software Mentions: 1
Published: over 8 years ago

10.1136/jitc-2020-002118

Non-invasive measurement of PD-L1 status and prediction of immunotherapy response using deep learning of PET/CT images
Cited by: 65
Author(s): Wei Mu, Lei Jiang, Yu Shi, Ilke Tunali, Jhanelle E. Gray, Evangelia Katsoulakis, Jie Tian, Robert J. Gillies, Matthew B. Schabath
Software Mentions: 1
Published: about 5 years ago

10.1186/s12887-018-1380-8

The influence of gestational age in the psychometric testing of the Bernese Pain Scale for Neonates
Cited by: 12
Author(s): Karin Schenk, Liliane Stoffel, Reto Bürgin, Bonnie Stevens, Dirk Bassler, Sven Schulzke, Mathias Nelle, Eva Cignacco
Software Mentions: 1
Published: over 7 years ago

10.1177/0305735616670496

The effect of context and audio-visual modality on emotions elicited by a musical performance
Cited by: 20
Author(s): Eduardo Coutinho, Klaus R. Scherer
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijerph18136803

Screening for Posttraumatic Stress Symptoms in Young Refugees: Comparison of Questionnaire Data with and without Involvement of an Interpreter
Cited by: 2
Author(s): Lauritz Rudolf Floribert Müller, Johanna Unterhitzenberger, Svenja Wintersohl, Rita Rosner, Julia König
Software Mentions: 1
Published: about 5 years ago

10.14814/phy2.14841

Interval‐induced metabolic perturbation determines tissue fluid shifts into skeletal muscle
Cited by: 3
Author(s): Mirko Mandić, Mikael Forsgren, Thobias Romu, Per Widholm, Patrik Sundblad, Thomas Gustafsson, Eric Rullman
Software Mentions: 1
Published: over 5 years ago

10.1093/cid/ciz1239

Phase 1 Human Immunodeficiency Virus (HIV) Vaccine Trial to Evaluate the Safety and Immunogenicity of HIV Subtype C DNA and MF59-Adjuvanted Subtype C Envelope Protein
Cited by: 12
Author(s): MC Hosseinipour, Craig Innes, Sandy Naidoo, Philipp Mann, Julia Hütter, Gita Ramjee, Modulakgotla Sebe, Lucas Maganga, Herce Me, deCamp Ac, Kyle Marshall, One Dintwe, Erica Andersen‐Nissen, GD Tomaras, Nonhlanhla N. Mkhize, Lynn Morris, Ryan L. Jensen, Maurine D. Miner, Giuseppe Pantaleo, Song Ding, Van Der Meeren O, SW Barnett, McElrath Mj, Lawrence Corey, Kublin Jg
Software Mentions: 1
Published: over 6 years ago

10.1186/1476-511X-5-7

Cited by: 45
Author(s): Jameela Banu, Alok Bhattacharya, Md. Mizanur Rahman, Marianne O’Shea, Gabriel Fernandes
Software Mentions: 1
Published: over 20 years ago

10.1186/s10194-020-01156-9

Cognitive and sensorimotor function in participants being treated for trigeminal neuralgia pain
Cited by: 4
Author(s): Rachel O. Coats, Kirsty Crossley, Naomi Conlin, Jianhua Wu, Joanna M Zakrzewska, Sue Pavitt, Nick Phillips, Mark Mon-Williams
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0151354

Robot Guided ‘Pen Skill’ Training in Children with Motor Difficulties
Cited by: 5
Author(s): Katy Shire, Liam J. B. Hill, Winona Snapp-Childs, Geoffrey P. Bingham, Georgios Kountouriotis, Sally Barber, Mark Mon-Williams
Software Mentions: 1
Published: over 10 years ago