10.1186/s13059-020-02201-1

Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription
Cited by: 28
Author(s): Yue Feng, Yao Wang, Xiangnan Wang, Xiaohong He, Chen Yang, Ardalan Naseri, Thoru Pederson, Jing Zheng, Shaojie Zhang, Xiao Xiao, Wei Xie, Hanhui Ma
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1564

Consumer trait variation influences tritrophic interactions in salt marsh communities
Cited by: 10
Author(s): Andrew J. Hughes, Torrance C. Hanley, Nohelia P. Orozco, Robyn A. Zerebecki
Software Mentions: 3
Published: about 11 years ago

10.1002/ece3.7082

Environmental stress gradients regulate the relative importance of predator density‐ and trait‐mediated indirect effects in oyster reef communities
Cited by: 4
Author(s): Jessica L. Pruett, Marc J. Weissburg
Software Mentions: 3
Published: over 5 years ago

10.1186/2041-1480-5-5

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
Cited by: 47
Author(s): Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki‐Kinoshita, Seiichiro Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Ono Hiromasa, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi An Chen, Hirokazu Chiba, Peter J. A. Cock, K. Bretonnel Cohen, Alexandru Constantin, Geraint Duck, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Naohisa Goto, Robert Hoehndorf, Yoshinobu Igarashi, Hidetoshi Itaya, Maori Ito, Wataru Iwasaki, Matúš Kalaš, Takeo Katoda, Taejoon Kim, Anna Kokubu, Yusuke Komiyama, Masaaki Kotera, Camille Laibe, Hilmar Lapp, Thomas Lütteke, M. Scott Marshall, Mori Takaaki, Hiroshi Mori, Mizuki Morita, Katsuhiko Murakami, Mitsuteru Nakao, Hisashi Narimatsu, Hiroyo Nishide, Yosuke Nishimura, Johan Nyström-Persson, Soichi Ogishima, Yasunobu Okamura, Shujiro Okuda, Kazuki Oshita, Nicolle H. Packer, Pjotr Prins, René Ranzinger, Philippe Rocca-Serra, Susanna Assunta Sansone, Hiromichi Sawaki, Sung Ho Shin, Andrea Splendiani, Francesco Strozzi, Shu Tadaka, Filip V. Toukach, Ikuo Uchiyama, Masahito Umezaki, Rutger A. Vos, Patricia L. Whetzel, Issaku Yamada, Chisato Yamasaki, Riu Yamashita, William S. York, Christian M. Zmasek, Shoko Kawamoto, Toshihisa Takagi
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0226519

Early life starvation has stronger intra-generational than transgenerational effects on key life-history traits and consumption measures in a sawfly
Cited by: 8
Author(s): Sarah Catherine Paul, Rocky Putra, Caroline Müller
Software Mentions: 3
Published: over 6 years ago

10.1128/AEM.02574-17

Temporal and Regional Variability in the Skin Microbiome of Humpback Whales along the Western Antarctic Peninsula
Cited by: 37
Author(s): K. C. Bierlich, Colin Miller, Emelia DeForce, Ari S. Friedlaender, David W. Johnston, Amy Apprill
Software Mentions: 3
Published: over 8 years ago

10.3390/s19010104

Fog Architectures and Sensor Location Certification in Distributed Event-Based Systems
Cited by: 2
Author(s): Fátima Castro-Jul, Rebeca P. Díaz Redondo, Ana Fernández Vilas, Sophie Chabridon, Denis Conan
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0195429

Conservation planning under uncertainty in urban development and vegetation dynamics
Cited by: 5
Author(s): David Troupin, Yohay Carmel
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0140594

Ectopic Expression of Retrotransposon-Derived PEG11/RTL1 Contributes to the Callipyge Muscular Hypertrophy
Cited by: 13
Author(s): Xuewen Xu, Fabien Ectors, Erica E. Davis, Dimitri Pirottin, Hui‐Ling Cheng, Frédéric Farnir, Tracy Hadfield, Noelle E. Cockett, Carole Charlier, Michel Georges, Hitoshi Takeda
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0165043

Recreational Use of the Countryside: No Evidence that High Nature Value Enhances a Key Ecosystem Service
Cited by: 14
Author(s): Karen Hornigold, Iain R. Lake, Paul M. Dolman
Software Mentions: 3
Published: almost 10 years ago

10.1002/jcla.22901

Thymidine kinase 1 concentration in pleural effusion is a diagnostic marker and survival predictor for malignant pleural effusion
Cited by: 4
Author(s): Tian Tian, Jun Li, Wenjun Hu, Cuiling Sun, Ji Zhou
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0232385

Investigating the origin and consequences of endogenous default options in repeated economic choices
Cited by: 4
Author(s): Joaquina Couto, Leendert van Maanen, Maël Lebreton
Software Mentions: 3
Published: about 6 years ago

10.3389/fninf.2014.00008

Dipy, a library for the analysis of diffusion MRI data
Cited by: 754
Author(s): Eleftherios Garyfallidis, Matthew Brett, Bagrat Amirbekian, Ariel Rokem, Stéfan van der Walt, Maxime Descoteaux, Ian Nimmo‐Smith
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0207452

Listener characteristics modulate the semantic processing of native vs. foreign-accented speech
Cited by: 12
Author(s): Rebecca Holt, Carmen Kung, Katherine Demuth
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0139768

The Body as a Tool for Anger Awareness—Differential Effects of Angry Facial and Bodily Expressions on Suppression from Awareness
Cited by: 23
Author(s): Minye Zhan, Ruud Hortensius, Béatrice de Gelder
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0137260

Are There Age-Related Differences in the Ability to Learn Configural Responses?
Cited by: 17
Author(s): Rachel Clark, Michael Freedberg, Eliot Hazeltine, Michelle W. Voss
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0171994

Residual soil nitrate content and profitability of five cropping systems in northwest Iowa
Cited by: 7
Author(s): Robert L. De Haan, Matthew A. Schuiteman, Ronald Vos
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0111786

Fungicide Effects on Fungal Community Composition in the Wheat Phyllosphere
Cited by: 136
Author(s): Ida Karlsson, Hanna Friberg, Christian Steinberg, Paula Persson
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-021-85482-1

Benchmarking DNA isolation kits used in analyses of the urinary microbiome
Cited by: 14
Author(s): Lisa Karstens, Nazema Y. Siddiqui, Tamara Zaza, Alecsander Barstad, Cindy L. Amundsen, Tatyana A. Sysoeva
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0186512

Endemic chronic wasting disease causes mule deer population decline in Wyoming
Cited by: 75
Author(s): Melia T. DeVivo, David R. Edmunds, Matthew J. Kauffman, Brant A. Schumaker, Justin Binfet, Terry J. Kreeger, Bryan J. Richards, Hermann Schätzl, Todd E. Cornish
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0191925

Effects of resource-dependent cannibalism on population size distribution and individual life history in a case-bearing caddisfly
Cited by: 6
Author(s): Jun-ichi Okano, Noboru Okuda
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0231957

What do rates of deposition of dental cementum tell us? Functional and evolutionary hypotheses in red deer
Cited by: 6
Author(s): F. Javier Pérez‐Barbería, F. E. Guinness, María López-Quintanilla, Andrés J. García, Laureano Gallego, Jamil Cappelli, Martina Pérez Serrano, Tomás Landete‐Castillejos
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0229334

Age-related modulations of alpha and gamma brain activities underlying anticipation and distraction
Cited by: 20
Author(s): Hesham A. ElShafei, Lesly Fornoni, Rémy Masson, Olivier Bertrand, Aurélie Bidet-Caulet
Software Mentions: 3
Published: over 6 years ago

10.1111/eva.12981

Deciphering genetic mate choice: Not so simple in group‐housed conservation breeding programs
Cited by: 3
Author(s): Katherine A. Farquharson, Carolyn J. Hogg, Katherine Belov, Catherine E. Grueber
Software Mentions: 3
Published: about 6 years ago

10.3164/jcbn.18-84

Effect of storage and DNA extraction method on 16S rRNA-profiled fecal microbiota in Japanese adults
Cited by: 19
Author(s): Yuki Kawada, Yuji Naito, Akira Andoh, Motoyuki Ozeki, Ryo Inoüe
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-57416-w

Discovery of Afifi, the shallowest and southernmost brine pool reported in the Red Sea
Cited by: 13
Author(s): Carlos M. Duarte, Anders Røstad, Grégoire Michoud, Alan Barozzi, Giuseppe Merlino, António Delgado Huertas, Brian C. Hession, Francis L. Mallon, Abdulkader M. Afifi, Daniele Daffonchio
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-48784-z

Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice
Cited by: 29
Author(s): Raúl Cabrera‐Rubio, Angela Patterson, Paul D. Cotter, Naiara Beraza
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-019-43517-8

Chemosynthetic ectosymbionts associated with a shallow-water marine nematode
Cited by: 14
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Stéphane Hourdez, Mohamed Jebbar, Aurélie Tasiemski, Lucile Durand, Nicolas Gayet, Daniela Zeppilli
Software Mentions: 3
Published: over 7 years ago

10.1093/database/bax009

HopBase: a unified resource for Humulus genomics
Cited by: 27
Author(s): Steven T. Hill, Ramcharan Sudarsanam, Jimmy C. Henning, David A. Hendrix
Software Mentions: 3
Published: over 9 years ago

10.1186/s13568-019-0765-x

Responses of phyllosphere microbiota and plant health to application of two different biocontrol agents
Cited by: 38
Author(s): Chong Qin, Jiemeng Tao, Tianbo Liu, Yongjun Liu, Nengwen Xiao, Tianming Li, Yanling Gu, Huaqun Yin, Delong Meng
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-38489-8

Serotonin Transporter Deficiency is Associated with Dysbiosis and Changes in Metabolic Function of the Mouse Intestinal Microbiome
Cited by: 39
Author(s): Megha Singhal, Benjamin A. Turturice, Christopher R. Manzella, Ravi Ranjan, Ahmed A. Metwally, Juliana Theorell, Yue Huang, Waddah A. Alrefai, Pradeep K. Dudeja, Patricia W. Finn, David L. Perkins, Ravinder K. Gill
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.5383

From canopy to seed: Loss of snow drives directional changes in forest composition
Cited by: 7
Author(s): Sarah M. Bisbing, Brian Buma, Lauren E. Oakes, John Krapek, Allison Bidlack
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0233191

Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene
Cited by: 3
Author(s): Jaafar Alomairi, Anne Molitor, Nori Sadouni, Saadat Hussain, Magali Torres, Wiam Saadi, Lan T M Dao, Guillaume Charbonnier, David Santiago-Algarra, Jean-Christophe Andrau, Denis Puthier, Tom Sexton, Salvatore Spicuglia
Software Mentions: 3
Published: about 6 years ago

10.3389/fmicb.2017.01997

Amplicon-Based Sequencing of Soil Fungi from Wood Preservative Test Sites
Cited by: 9
Author(s): Grant T. Kirker, Amy B. Bishell, Michelle A. Jusino, Jonathan M. Palmer, William J. Hickey, Daniel L. Lindner
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.celrep.2018.07.104

Simultaneous Measurement of Transcriptional and Post-transcriptional Parameters by 3′ End RNA-Seq
Cited by: 9
Author(s): Manfred Schmid, Agnieszka Tudek, Torben Heick Jensen
Software Mentions: 3
Published: about 8 years ago

10.3390/toxins5122488

A Proteomics and Transcriptomics Investigation of the Venom from the Barychelid Spider Trittame loki (Brush-Foot Trapdoor)
Cited by: 64
Author(s): Eivind A.B. Undheim, Kartik Sunagar, Volker Herzig, Laurence Kely, Dolyce H. W. Low, Timothy N. W. Jackson, Alun Jones, Nyoman D. Kurniawan, Glenn F. King, Syed Abid Ali, Agostinho Antunes, Tim Ruder, Bryan G. Fry
Software Mentions: 3
Published: over 12 years ago

10.1038/s41598-019-39829-4

Intensive tropical land use massively shifts soil fungal communities
Cited by: 70
Author(s): Nicole Brinkmann, Dominik Schneider, Josephine Sahner, Johannes Ballauff, Nur Edy, Henry Barus, Bambang Irawan, Setia Budi, Matin Qaim, Rolf Daniel, Andrea Polle
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers12113079

Comprehensive Analysis of DNA Methylation and Prediction of Response to NeoadjuvantTherapy in Locally Advanced Rectal Cancer
Cited by: 12
Author(s): Luísa Matos do Canto, Mateus Camargo Barros-Filho, Cláudia Aparecida Rainho, Diogo Marinho, Bruna Elisa Catin Kupper, Maria D. Begnami, Cristovam Scapulatempo‐Neto, Birgitte Mayland Havelund, Jan Lindebjerg, Fábio Albuquerque Marchi, Jan Baumbach, Samuel Aguiar, Sílvia Regina Rogatto
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2407-8-107

Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitrocultured epithelial cells derived from the cancer tissues
Cited by: 19
Author(s): Jan Vydra, Irena Selicharová, Kateřina Smutná, Miloslav Šanda, Eva Matoušková, Eva Buršíková, Markéta Prchalová, Z Velenská, David Coufal, Jiřı́ Jiráček
Software Mentions: 3
Published: over 18 years ago

10.3390/cancers12113431

CPT1A Over-Expression Increases Reactive Oxygen Species in the Mitochondria and Promotes Antioxidant Defenses in Prostate Cancer
Cited by: 19
Author(s): Molishree Joshi, Jihye Kim, Angelo D’Alessandro, Emily Monk, Kimberley D. Bruce, Hanan Elajaili, Eva Nozik‐Grayck, Andrew Goodspeed, James C. Costello, Isabel R. Schlaepfer
Software Mentions: 3
Published: over 5 years ago

10.1186/s12920-019-0494-7

Early gut microbiota signature of aGvHD in children given allogeneic hematopoietic cell transplantation for hematological disorders
Cited by: 48
Author(s): Elena Biagi, Daniele Zama, Simone Rampelli, Silvia Turroni, Patrizia Brigidi, Clarissa Consolandi, Marco Severgnini, Eleonora Picotti, Pietro Gasperini, Pietro Merli, Nunzia Decembrino, Marco Zecca, Simone Cesaro, Maura Faraci, Arcangelo Prete, Franco Locatelli, Andrea Pession, Marco Candela, Riccardo Masetti
Software Mentions: 3
Published: over 7 years ago

10.1002/ece3.6562

Classifying biogeographic realms of the endemic fauna in the Afro‐Arabian region
Cited by: 6
Author(s): Alaaeldin Soultan, Martin Wikelski, Kamran Safi
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0220619

Gut microbiome response to a modern Paleolithic diet in a Western lifestyle context
Cited by: 55
Author(s): Monica Barone, Silvia Turroni, Simone Rampelli, Matteo Soverini, Federica D’Amico, Elena Biagi, Patrizia Brigidi, Emidio Troiani, Marco Candela
Software Mentions: 3
Published: about 7 years ago

10.1186/s12931-019-1080-4

Chronic obstructive pulmonary disease upper airway microbiota alpha diversity is associated with exacerbation phenotype: a case-control observational study
Cited by: 29
Author(s): Alexa A. Pragman, Katherine A. Knutson, Trevor Gould, Richard E. Isaacson, Cavan Reilly, Christine Wendt
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0135800

ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification
Cited by: 12
Author(s): Riyue Bao, Kyle M. Hernandez, Lei Huang, Wenjun Kang, Elizabeth T. Bartom, Kenan Onel, Samuel L. Volchenboum, Jorge Andrade
Software Mentions: 3
Published: about 11 years ago

10.1038/s41396-019-0545-2

The Green Revolution shaped the population structure of the rice pathogen Xanthomonas oryzae pv. oryzae
Cited by: 29
Author(s): Ian Lorenzo Quibod, Genelou Atieza-Grande, Eula Gems Oreiro, Denice Palmos, Marian Hanna R. Nguyen, Sapphire Coronejo, Ei Ei Aung, Cipto Nugroho, Verónica Román-Reyna, M. R. G. Burgos, Pauline Capistrano, Sylvestre G. Dossa, Geoffrey Onaga, Caesar Saloma, Casiana Vera Cruz, Ricardo Oliva
Software Mentions: 3
Published: almost 7 years ago

10.1038/srep32826

Fecal metabolome of the Hadza hunter-gatherers: a host-microbiome integrative view
Cited by: 64
Author(s): Silvia Turroni, Jessica Fiori, Simone Rampelli, Stephanie L. Schnorr, Clarissa Consolandi, Monica Barone, Elena Biagi, Flaminia Fanelli, Marco Mezzullo, Alyssa N. Crittenden, Amanda G. Henry, Patrizia Brigidi, Marco Candela
Software Mentions: 3
Published: almost 10 years ago

10.3390/insects11020125

Floral Species Richness Correlates with Changes in the Nutritional Quality of Larval Diets in a Stingless Bee
Cited by: 26
Author(s): Moritz Trinkl, Benjamin F. Kaluza, Helen M. Wallace, Tim A. Heard, Alexander Keller, Sara D. Leonhardt
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2020.571159

Niche Specialization and Functional Overlap of Bamboo Leaf and Root Microbiota
Cited by: 8
Author(s): Ying Zheng, Xinchun Lin
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0206738

Unprecedented plant species loss after a decade in fragmented subtropical Chaco Serrano forests
Cited by: 14
Author(s): Ramiro Aguilar, Ana Alejandra Calviño, Lorena Ashworth, Natalia Aguirre-Acosta, Lucas M. Carbone, Guillermo Albrieu-Llinás, Miguel Nolasco, Adrián Ghilardi, Luciano Cagnolo
Software Mentions: 3
Published: over 7 years ago

10.1155/2015/323506

Utilities for High-Throughput Analysis of B-Cell Clonal Lineages
Cited by: 9
Author(s): William D. Lees, Adrian J. Shepherd
Software Mentions: 3
Published: over 11 years ago

10.1186/s12885-020-07157-w

Network-based identification of biomarkers for colon adenocarcinoma
Cited by: 5
Author(s): Fuyan Hu, Qing Wang, Zhiyuan Yang, Zhen Zeng, Xiaoping Li
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0216838

Variant analysis pipeline for accurate detection of genomic variants from transcriptome sequencing data
Cited by: 21
Author(s): Modupeore O. Adetunji, Susan J. Lamont, Behnam Abasht, Carl J. Schmidt
Software Mentions: 3
Published: almost 7 years ago

10.1038/srep33829

Validation of trophic and anthropic underwater noise as settlement trigger in blue mussels
Cited by: 28
Author(s): Aurélie Jolivet, Réjean Tremblay, Frédéric Olivier, Cédric Gervaise, Rémi Sonier, Bertrand Génard, Laurent Chauvaud
Software Mentions: 3
Published: almost 10 years ago

10.1038/srep25712

Habitat heterogeneity and connectivity shape microbial communities in South American peatlands
Cited by: 27
Author(s): Felix Oloo, Ángel Valverde, María Victoria Quiroga, Surendra Vikram, Don A. Cowan, Gabriela Mataloni
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0081354

Thermal Carrying Capacity for a Thermally-Sensitive Species at the Warmest Edge of Its Range
Cited by: 20
Author(s): Daniel Ayllón, Graciela G. Nicola, Benigno Elvira, Irene Parra, Ana Almodóvar
Software Mentions: 3
Published: over 12 years ago

10.1186/s12891-017-1493-5

Mortality, readmission, and reoperation after hip fracture in nonagenarians
Cited by: 53
Author(s): Chien Fu Jeff Lin, Wen Miin Liang
Software Mentions: 3
Published: over 9 years ago

10.1186/1471-2105-15-72

Natural polymorphisms and unusual mutations in HIV-1 protease with potential antiretroviral resistance: a bioinformatic analysis
Cited by: 8
Author(s): Carlos Mata-Munguía, Martha Escoto-Delgadillo, Blanca Miriam Torres-Mendoza, M.E. Flores-Soto, Mildred Vázquez-Torres, Francisco Javier Gálvez-Gastélum, Arturo Viniegra‐Osorio, Marcelo Castillero-Manzano, Eduardo Vázquez-Valls
Software Mentions: 3
Published: over 12 years ago

10.1098/rsob.200237

Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential
Cited by: 55
Author(s): J.G.M. Rack, Valentina Zorzini, Zihan Zhu, M. Schuller, Dragana Ahel, Ivan Ahel
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12859-017-1665-1

Solving the master equation for Indels
Cited by: 18
Author(s): Ian Holmes
Software Mentions: 3
Published: over 9 years ago

10.1186/s12891-015-0671-6

Outcomes after fixation for undisplaced femoral neck fracture compared to hemiarthroplasty for displaced femoral neck fracture among the elderly
Cited by: 21
Author(s): Jeff Lin, Wen Miin Liang
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0237337

Mobile phone use is associated with higher smallholder agricultural productivity in Tanzania, East Africa
Cited by: 32
Author(s): Amy Quandt, Jonathan Salerno, Jason C. Neff, Timothy D. Baird, James B. Herrick, J. Terrence McCabe, Emilie Xu, Joel Hartter
Software Mentions: 3
Published: about 6 years ago

10.1186/1741-7007-7-7

A large new subset of TRIM genes highly diversified by duplication and positive selection in teleost fish
Cited by: 136
Author(s): Lieke M. van der Aa, Jean‐Pierre Levraud, Malika Yahmi, Emilie Lauret, Valérie Briolat, Philippe Herbomel, Abdenour Benmansour, Pierre Boudinot
Software Mentions: 3
Published: over 17 years ago

10.1371/journal.pone.0242035

Seed encrusting with salicylic acid: A novel approach to improve establishment of grass species in ecological restoration
Cited by: 5
Author(s): Simone Pedrini, Jason C. Stevens, Kingsley W. Dixon
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0068948

Development of a Gravid Trap for Collecting Live Malaria Vectors Anopheles gambiae s.l.
Cited by: 13
Author(s): Sisay Dugassa, Jenny M. Lindh, Florence Oyieke, Wolfgang R Mukabana, Steve W. Lindsay, Ulrike Fillinger
Software Mentions: 3
Published: about 13 years ago

10.1093/database/baz060

ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer
Cited by: 10
Author(s): Judith Pérez-Granado, Janet Piñero, Laura I. Furlong
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0256463

Adapting the coordination of eyes and head to differences in task and environment during fully-mobile visual exploration
Cited by: 12
Author(s): John M. Franchak, Brianna McGee, Gabrielle Blanch
Software Mentions: 3
Published: almost 5 years ago

10.1007/s00248-020-01667-7

Root-Associated Mycobiomes of Common Temperate Plants (Calluna vulgaris and Holcus lanatus) Are Strongly Affected by Winter Climate Conditions
Cited by: 3
Author(s): Mathilde Borg Dahl, Derek Peršoh, Anke Jentsch, Jüergen Kreyling
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008835

Choice of method of place cell classification determines the population of cells identified
Cited by: 6
Author(s): D. M. Grijseels, Kira Shaw, Caswell Barry, Catherine N. Hall
Software Mentions: 3
Published: about 5 years ago

10.1016/j.bdq.2018.08.001

Algorithms for automated detection of hook effect-bearing amplification curves
Cited by: 11
Author(s): Michał Burdukiewicz, Andrej‐Nikolai Spiess, Konstantin A. Blagodatskikh, W. Lehmann, Peter Schierack, Stefan Rödiger
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.3539

Long-term monitoring reveals an avian species credit in secondary forest patches of Costa Rica
Cited by: 11
Author(s): Steven C. Latta, Nathan L. Brouwer, Alison Olivieri, Julie Girard-Woolley, Judy F. Richardson
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pcbi.1007274

A benchmark of computational CRISPR-Cas9 guide design methods
Cited by: 23
Author(s): Jacob Bradford, Dimitri Perrin
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13007-020-00622-4

Core-labelling technique (CLT): a novel combination of the ingrowth-core method and tracer technique for deep root study
Cited by: 10
Author(s): Eusun Han, Dorte Bodin Dresbøll, Kristian Thorup‐Kristensen
Software Mentions: 3
Published: about 6 years ago

10.1111/pbi.12888

Haplotype‐based genotyping‐by‐sequencing in oat genome research
Cited by: 82
Author(s): Wubishet A. Bekele, Charlene P. Wight, Shiaoman Chao, Catherine Howarth, Nicholas A. Tinker
Software Mentions: 3
Published: over 8 years ago

10.1098/rstb.2016.0459

Recombination rate plasticity: revealing mechanisms by design
Cited by: 31
Author(s): Laurie S. Stevison, Stephen A. Sefick, Chase Rushton, Rita M. Graze
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2021.702210

Spatial Virome Analysis of Zanthoxylum armatum Trees Affected With the Flower Yellowing Disease
Cited by: 5
Author(s): Mengji Cao, Song Zhang, Ruiling Liao, Xiaoru Wang, Zhiyou Xuan, Binhui Zhan, Zhiqi Li, Jie Zhang, Xinnian Du, Zhengsen Tang, Shifang Li, Yan Zhou
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0235312

Who’s afraid of the big bad boar? Assessing the effect of wild boar presence on the occurrence and activity patterns of other mammals
Cited by: 6
Author(s): Êmila Silveira de Oliveira, Manoel Ludwig da Fontoura Rodrigues, Magnus Machado Severo, Tiágo Gomes dos Santos, Carlos Benhur Kasper
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pbio.3000580

12-h clock regulation of genetic information flow by XBP1s
Cited by: 34
Author(s): Yinghong Pan, Heather Ballance, Huan Meng, Naomi Gonzalez, Sam-Moon Kim, Leymaan Abdurehman, Brian York, Xi Chen, Yisrael Schnytzer, Oren Levy, Clifford C. Dacso, Colleen A. McClung, Bert W. O’Malley, Silvia Liu, Bokai Zhu
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.4209

Developmental effects of environmental light on male nuptial coloration in Lake Victoria cichlid fish
Cited by: 8
Author(s): Daniel Shane Wright, Emma Rietveld, Martine E. Maan
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0193369

Edge effects and beta diversity in ground and canopy beetle communities of fragmented subtropical forest
Cited by: 9
Author(s): Marisa J. Stone, Carla Catterall, Nigel E. Stork
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.7508

Conspicuous colours reduce predation rates in fossorial uropeltid snakes
Cited by: 17
Author(s): Vivek Philip Cyriac, Ullasa Kodandaramaiah
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pbio.1000238

Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA
Cited by: 376
Author(s): David G. Hendrickson, Daniel J. Hogan, Heather McCullough, Jason W. Myers, Daniel Herschlag, James E. Ferrell, Patrick O. Brown
Software Mentions: 3
Published: almost 17 years ago

10.1371/journal.pcbi.1004186

Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based Feature Weighting
Cited by: 24
Author(s): Davide Albanese, Carlotta De Filippo, Duccio Cavalieri, Claudio Donati
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-021-97102-z

A ferroptosis-associated gene signature for the prediction of prognosis and therapeutic response in luminal-type breast carcinoma
Cited by: 3
Author(s): Yang Peng, Haochen Yu, Yingzi Zhang, Fanli Qu, Zhenrong Tang, Chi Qu, Jiao Tian, Beige Zong, Yu Wang, Haoyu Ren, Shengchun Liu
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.4991

Seasonal dynamics alter taxonomical and functional microbial profiles in Pampa biome soils under natural grasslands
Cited by: 24
Author(s): Anthony Barboza, Victor Satler Pylro, Rodrigo Josemar Seminot Jacques, Paulo Ivonir Gubiani, Fernando Luíz Ferreira de Quadros, Júlio Kuhn da Trindade, Eric W. Triplett, Luiz Fernando Würdig Roesch
Software Mentions: 3
Published: about 8 years ago

10.3390/microorganisms9091843

Influence of Tall Fescue Epichloë Endophytes on Rhizosphere Soil Microbiome
Cited by: 9
Author(s): Kishan Mahmud, Kendall Lee, Nicholas S. Hill, Anaas Mergoum, Ali Missaoui
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.8860

Interaction effects of aging, word frequency, and predictability on saccade length in Chinese reading
Cited by: 3
Author(s): Zhifang Liu, Wen Tong, Yongqiang Su
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.9792

Life history and habitat do not mediate temporal changes in body size due to climate warming in rodents
Cited by: 4
Author(s): Aluwani Nengovhela, Christiane Denys, Peter J. Taylor
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.9414

The timing mega-study: comparing a range of experiment generators, both lab-based and online
Cited by: 201
Author(s): David Bridges, Alain Pitiot, Michael R. MacAskill, Jonathan W. Peirce
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.1310

Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution
Cited by: 25
Author(s): Rakesh Kumar Majhi, S. K. Saha, Ashutosh Kumar, Arijit Ghosh, Nirlipta Swain, Luna Goswami, Pratyush P. Mohapatra, Apratim Maity, Vivek Kumar Sahoo, Abhishek Kumar, Chandan Goswami
Software Mentions: 3
Published: almost 11 years ago

10.1186/s40168-016-0227-5

Host genetic variation in mucosal immunity pathways influences the upper airway microbiome
Cited by: 54
Author(s): Catherine Igartua, Emily Davenport, Yoav Gilad, Dan L. Nicolae, Jayant M. Pinto, Carole Ober
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.2430

Environment and host species shape the skin microbiome of captive neotropical bats
Cited by: 46
Author(s): Virginie Lemieux-Labonté, Nicolas Tromas, B. Jesse Shapiro, François‐Joseph Lapointe
Software Mentions: 3
Published: almost 10 years ago

10.12688/wellcomeopenres.15355.2

GeneDB and Wikidata
Cited by: 2
Author(s): Magnus Manske, Ulrike Böhme, Christoph Püthe, Matthew Berriman
Software Mentions: 3
Published: almost 7 years ago

10.3389/fpls.2018.01453

Ectopic Transplastomic Expression of a Synthetic MatK Gene Leads to Cotyledon-Specific Leaf Variegation
Cited by: 12
Author(s): Yujiao Qu, Julia Legen, J Arndt, Stephanie Henkel, Galina Hoppe, Christopher Thieme, Giovanna Ranzini, Jose M. Muiño, Andreas Weihe, Uwe Ohler, Gert Weber, Oren Ostersetzer, Christian Schmitz‐Linneweber
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2105-12-13

A Platform for Processing Expression of Short Time Series (PESTS)
Cited by: 16
Author(s): Ayan Sinha, Marianthi Markatou
Software Mentions: 3
Published: over 15 years ago

10.3390/microorganisms8122022

Comparative Microbiome and Metabolome Analyses of the Marine Tunicate Ciona intestinalis from Native and Invaded Habitats
Cited by: 15
Author(s): Caroline Utermann, Martina Blümel, Kathrin Busch, Larissa Buedenbender, Ya‐Ping Lin, Brad Haltli, Russell G. Kerr, Elizabeta Briski, Ute Hentschel, Deniz Taşdemir
Software Mentions: 3
Published: over 5 years ago

10.1186/s40168-019-0672-z

Seasonal dynamics of DNA and RNA viral bioaerosol communities in a daycare center
Cited by: 27
Author(s): Aaron J. Prussin, Pedro J. Torres, John Shimashita, Steven R. Head, Kyle Bibby, Scott T. Kelley, Linsey C. Marr
Software Mentions: 3
Published: over 7 years ago

10.1186/s40168-016-0220-z

Deciphering composition and function of the root microbiome of a legume plant
Cited by: 135
Author(s): Kyle Hartman, Marcel G. A. van der Heijden, Valexia Roussely-Provent, Jean‐Claude Walser, Klaus Schlaeppi
Software Mentions: 3
Published: over 9 years ago

10.7717/peerj.4360

Ground beetles in city forests: does urbanization predict a personality trait?
Cited by: 23
Author(s): Wiebke Schuett, Berit Delfs, R. Haller, Sarah Kruber, Simone Roolfs, Desiree Timm, Magdalena Willmann, Claudia Drees
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.5929

Nutrition of marine mesograzers: integrating feeding behavior, nutrient intake and performance of an herbivorous amphipod
Cited by: 7
Author(s): Glauco Machado, Fosca Pedini Pereira Leite, Erik E. Sotka
Software Mentions: 3
Published: almost 8 years ago