10.1038/s41598-020-77537-6

Citizen science data reveals the need for keeping garden plant recommendations up-to-date to help pollinators
Cited by: 3
Author(s): Helen Anderson, Anne-Marie Robinson, Advaith Siddharthan, Nirwan Sharma, Helen Bostock, Andrew Salisbury, Stuart P. M. Roberts, René van der Wal
Software Mentions: 1
Published: over 5 years ago

10.1186/s12967-016-0921-x

Guizhi-Shaoyao-Zhimu decoction attenuates rheumatoid arthritis partially by reversing inflammation-immune system imbalance
Cited by: 45
Author(s): Qiuyan Guo, Xia Mao, Yanqiong Zhang, Shi-Qiu Meng, Yue Xi, Yi Ding, Xiaocun Zhang, Yuntao Dai, Xia Liu, Chao Wang, Yuting Li, Na Lin
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-79157-6

Picophytoplankton dynamics in a large temperate estuary and impacts of extreme storm events
Cited by: 25
Author(s): Ryan W. Paerl, Rebecca E. Venezia, Joel J. Sanchez, Hans W. Paerl
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80642-1

Particulate matter emission sources and meteorological parameters combine to shape the airborne bacteria communities in the Ligurian coast, Italy
Cited by: 5
Author(s): Giorgia Palladino, Pietro Morozzi, Elena Biagi, Erika Brattich, Silvia Turroni, Simone Rampelli, Laura Tositti, Marco Candela
Software Mentions: 1
Published: over 5 years ago

10.1186/s13040-015-0037-5

Big data - a 21st century science Maginot Line? No-boundary thinking: shifting from the big data paradigm
Cited by: 5
Author(s): Xiuzhen Huang, Steven F. Jennings, Barry D. Bruce, Alison Buchan, Liming Cai, Pengyin Chen, Carole L. Cramer, Weihua Guan, Uwe Hilgert, Hongmei Jiang, Zenglu Li, Gail McClure, Donald F. McMullen, Bindu Nanduri, Andy D. Perkins, Bhanu Rekepalli, Saeed Salem, Jennifer L. Specker, Karl Walker, Donald C. Wunsch, Donghai Xiong, Shuzhong Zhang, Yu Zhang, Zhongming Zhao, Jason H. Moore
Software Mentions: 1
Published: over 11 years ago

10.1098/rspa.2019.0653

Beyond non-backtracking: non-cycling network centrality measures
Cited by: 7
Author(s): Francesca Arrigo, Desmond J. Higham, Vanni Noferini
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-80379-x

Physiological responses of Siberian sturgeon (Acipenser baerii) juveniles fed on full-fat insect-based diet in an aquaponic system
Cited by: 23
Author(s): Matteo Zarantoniello, Basilio Randazzo, Valentina Nozzi, Cristina Truzzi, Elisabetta Giorgini, Gloriana Cardinaletti, Lorenzo Freddi, Stefano Ratti, Federico Girolametti, Andrea Osimani, Valentina Notarstefano, Vesna Milanović, Paola Riolo, Nunzio Isidoro, Francesca Tulli, Giorgia Gioacchini, Iacopo Olivotto
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-81158-y

Metabolomics-based analysis of miniature flask contents identifies tobacco mixture use among the ancient Maya
Cited by: 13
Author(s): Mario Zimmermann, Korey J. Brownstein, Luis Pantoja Dïaz, Iliana Ancona Aragón, Scott R. Hutson, Barry Kidder, Shannon Tushingham, David R. Gang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22031494

Integrated Metabolome and Transcriptome Analysis Unveils Novel Pathway Involved in the Formation of Yellow Peel in Cucumber
Cited by: 28
Author(s): Chen Chen, Geng Zhou, Juan Chen, Xiaohong Liu, Xiangyang Lu, Huiming Chen, Yun Tian
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.1004447

ReproPhylo: An Environment for Reproducible Phylogenomics
Cited by: 17
Author(s): Amir Szitenberg, McCormick John, Mark Blaxter, David H. Lunt
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-021-82060-3

Effects of integrated biocontrol on bacterial wilt and rhizosphere bacterial community of tobacco
Cited by: 18
Author(s): Yun Hu, Yanyan Li, Xiaomin Yang, Chunli Li, Lin Wang, Jia‐Xun Feng, Shouwen Chen, Xihong Li, Yong Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/1759-4499-4-1

P2P proteomics -- data sharing for enhanced protein identification
Cited by: 1
Author(s): Marco Schorlemmer, Joaquín Abián, Carles Sierra, David de la Cruz, Lorenzo Bernacchioni, Enric Jaén, Adrián Perreau de Pinninck, Manuel Atencia
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-021-82993-9

Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts
Cited by: 6
Author(s): Daniela Costa, Simon Lévesque, Nitin Kumar, Pablo Fresia, Ignacio Ferrés, Trevor D. Lawley, Gregorio Iraola
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-7-307

Evolution of proteomes: fundamental signatures and global trends in amino acid compositions
Cited by: 81
Author(s): Fredj Tekaia, Edouard Yeramian
Software Mentions: 1
Published: over 19 years ago

10.1038/s41598-021-83112-4

Genetic structure of a remnant Acropora cervicornis population
Cited by: 3
Author(s): Steven W. J. Canty, Graeme Fox, Jennifer K. Rowntree, Richard F. Preziosi
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-12-182

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress
Cited by: 130
Author(s): Qiaoying Zeng, Chunrong Yang, Qibin Ma, Xiuping Li, Wenwen Dong, Hai Nian
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0229834

MPV17 does not control cancer cell proliferation
Cited by: 3
Author(s): Morgane Canonne, Anaïs Wanet, Thuy Truong An Nguyen, Alexis Khelfi, Sophie Ayama-Canden, Martine Van Steenbrugge, Antoine Fattaccioli, Étienne Sokal, Mustapha Najimi, Thierry Arnould, Patricia Renard
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0035929

DNA Barcoding Simplifies Environmental Risk Assessment of Genetically Modified Crops in Biodiverse Regions
Cited by: 3
Author(s): Chinyere V. Nzeduru, Sandra Ronca, M. J. Wilkinson
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-021-84790-w

Associations between dog keeping and indoor dust microbiota
Cited by: 9
Author(s): Jenni M. Mäki, Pirkka V. Kirjavainen, Martin Täubel, Eija Piippo‐Savolainen, Katri Backman, Anne Hyvärinen, Pauli Tuoresmäki, Balamuralikrishna Jayaprakash, Joachim Heinrich, Gunda Herberth, Marie Standl, Juha Pekkanen, Anne M. Karvonen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.02518

Differential Ecological Specificity of Protist and Bacterial Microbiomes across a Set of Termite Species
Cited by: 23
Author(s): Lena Waidele, Judith Korb, Christian R. Voolstra, Sven Künzel, Franck Dedeine, Fabian Staubach
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2021.644255

Unraveling Interactions of the Necrotrophic Fungal Species Botrytis cinerea With 1-Methylcyclopropene or Ozone-Treated Apple Fruit Using Proteomic Analysis
Cited by: 8
Author(s): Stefanos Testempasis, Georgia Tanou, Ioannis S. Minas, Martina Samiotaki, Athanassios Molassiotis, G. S. Karaoglanidis
Software Mentions: 1
Published: over 5 years ago

10.1007/s00335-019-09820-5

Genome-wide scans identify known and novel regions associated with prolificacy and reproduction traits in a sub-Saharan African indigenous sheep (Ovis aries)
Cited by: 23
Author(s): Asrat Tera Dolebo, Negar Khayatzadeh, Aberra Melesse, David Wragg, Mourad Rekik, Aynalem Haile, Barbara Rischkowsky, Max F. Rothschild, Joram M. Mwacharo
Software Mentions: 1
Published: almost 7 years ago

10.1111/eva.13118

Ethiopian indigenous goats offer insights into past and recent demographic dynamics and local adaptation in sub‐Saharan African goats
Cited by: 5
Author(s): Getinet Mekuriaw Tarekegn, Negar Khayatzadeh, Bin Liu, Sarah Osama, Aynalem Haile, Barbara Rischkowsky, Wenguang Zhang, Kassahun Tesfaye, Tadelle Dessie, Okeyo Ally Mwai, Appolinaire Djikeng, Joram M. Mwacharo
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.01453

Global Scale Dissemination of ST93: A Divergent Staphylococcus aureus Epidemic Lineage That Has Recently Emerged From Remote Northern Australia
Cited by: 25
Author(s): Sebastiaan J. van Hal, Eike J. Steinig, Patiyan Andersson, Matthew T. G. Holden, Simon R. Harris, Graeme R. Nimmo, Deborah A. Williamson, Helen Heffernan, Stephen Ritchie, Angela Kearns, Matthew J. Ellington, Elizabeth Dickson, Hermı́nia de Lencastre, Geoffrey W. Coombs, Stephen D. Bentley, Julian Parkhill, Deborah C. Holt, Philip M. Giffard, Steven Y. C. Tong
Software Mentions: 1
Published: about 8 years ago

10.3390/nu13093159

Protein Intake, Metabolic Status and the Gut Microbiota in Different Ethnicities: Results from Two Independent Cohorts
Cited by: 5
Author(s): Pierre Bel Lassen, Ilias Attaye, Solia Adriouch, Mary Nicolaou, Judith Aron‐Wisnewsky, Trine Nielsen, Rima Chakaroun, Emmanuelle Le Chatelier, Kristoffer Forslund, Eugeni Belda, Peer Bork, Fredrik Bäckhed, M Stumvoll, Oluf Pedersen, Hilde Herrema, Albert K. Groen, Sara‐Joan Pinto‐Sietsma, Aeilko H. Zwinderman, Max Nieuwdorp, Karine Clément, on behalf of Metacardis Consortium
Software Mentions: 1
Published: almost 5 years ago

10.3390/nu13051738

Gut Microbiota Induced by Pterostilbene and Resveratrol in High-Fat-High-Fructose Fed Rats: Putative Role in Steatohepatitis Onset
Cited by: 15
Author(s): Iñaki Milton-Laskíbar, Laura Judith Marcos-Zambrano, Saioa Gómez‐Zorita, Alfredo Fernández‐Quintela, Enrique Carrillo de Santa Pau, J. Alfredo Martínéz, María Puy Portillo Baquedano
Software Mentions: 1
Published: over 5 years ago

10.3390/nu7053279

Phylum Level Change in the Cecal and Fecal Gut Communities of Rats Fed Diets Containing Different Fermentable Substrates Supports a Role for Nitrogen as a Factor Contributing to Community Structure
Cited by: 15
Author(s): Martin Kalmokoff, Jeff Franklin, Nicholas Petronella, Judy Green, Stephen P. J. Brooks
Software Mentions: 1
Published: over 11 years ago

10.3390/nu13082837

Association of the Maternal Gut Microbiota/Metabolome with Cord Blood CCL17
Cited by: 2
Author(s): Hiromi Tanabe, Kenichi Sakurai, Yumiko Nakanishi, Tamotsu Kato, Yohei Kawasaki, Taiji Nakano, Fumiya Yamaide, Naoko Taguchi‐Atarashi, Yuki Shiko, Ikumi Takashima, Masahiro Watanabe, Satoru Ochiai, Hiroshi Ohno, Hiroshi Fukuoka, Naoki Shimojo, Chisato Mori
Software Mentions: 1
Published: about 5 years ago

10.3390/nu13041260

Non-Celiac Gluten/Wheat Sensitivity: Clinical Characteristics and Microbiota and Mycobiota Composition by Response to the Gluten Challenge Test
Cited by: 5
Author(s): Valentina Ponzo, Ilario Ferrocino, Ilaria Goitre, Marianna Pellegrini, Mauro Bruno, Marco Astegiano, G Cadario, E Castellana, Fabio Bioletto, Maria Rita Corvaglia, Patrizia Malfa, Luca Simone Cocolin, Ezio Ghigo, Simona Bo
Software Mentions: 1
Published: over 5 years ago

10.3390/nu10020230

Inadequate Iodine Intake in Population Groups Defined by Age, Life Stage and Vegetarian Dietary Practice in a Norwegian Convenience Sample
Cited by: 58
Author(s): Anne Lise Brantsæter, Helle Katrine Knutsen, Nina Cathrine Johansen, Kristine Aastad Nyheim, Iris Erlund, Helle Margrete Meltzer, Sigrun Henjum
Software Mentions: 1
Published: over 8 years ago

10.3390/ani11020506

Comparison of Fecal Microbiota of Horses Suffering from Atypical Myopathy and Healthy Co-Grazers
Cited by: 4
Author(s): Christina Wimmer-Scherr, Bernard Taminiau, Benoît Renaud, Gunther van Loon, Katrien Palmers, Dominique Votion, Hélène Amory, Georges Daube, Carla Cesarini
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103244

Circular RNA hsa_circ_0003141 promotes tumorigenesis of hepatocellular carcinoma via a miR-1827/UBAP2 axis
Cited by: 17
Author(s): Yong Wang, Rongfen Gao, Jinpeng Li, Shaotao Tang, Shuai Li, Qiangsong Tong, Yina Mao
Software Mentions: 1
Published: about 6 years ago

10.1186/s12941-017-0212-2

Genome sequence of Shigella flexneri strain SP1, a diarrheal isolate that encodes an extended-spectrum β-lactamase (ESBL)
Cited by: 3
Author(s): Ping Shen, Jiulun Fan, Lan-Ping Guo, Jiahua Li, Ang Li, Jing Zhang, Ying Chen, Jinru Ji, Hao Xu, Beiwen Zheng, Yonghong Xiao
Software Mentions: 1
Published: over 9 years ago

10.1186/s12906-020-03022-2

Mechanisms of Spica Prunellae against thyroid-associated Ophthalmopathy based on network pharmacology and molecular docking
Cited by: 9
Author(s): Yuhan Zhang, Xianzhi Li, Congcong Guo, Jianjun Dong, Lin Liao
Software Mentions: 1
Published: about 6 years ago

10.1186/s12862-020-01711-7

Avian phenotypic convergence is subject to low genetic constraints based on genomic evidence
Cited by: 1
Author(s): Yu-Chi Chen, Hao-Chih Kuo, Wen‐Sui Lo, Chih‐Ming Hung
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12863-018-0697-5

p.E95K mutation in Indian hedgehog causing brachydactyly type A1 impairs IHH/Gli1 downstream transcriptional regulation
Cited by: 4
Author(s): Lu Shen, Gang Ma, Ye Shi, Yunfeng Ruan, Xuhan Yang, Xi Wu, Yüting Xiong, Chunling Wan, Chao Yang, Lei Cai, Likuan Xiong, Xiaohua Gong, Lin He, Shengying Qin
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1826-4

BEACON: automated tool for Bacterial GEnome Annotation ComparisON
Cited by: 26
Author(s): Manal Kalkatawi, Intikhab Álam, Vladimir B. Bajic
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-15-272

Comparative genomics of the dairy isolate Streptococcus macedonicus ACA-DC 198 against related members of the Streptococcus bovis/Streptococcus equinus complex
Cited by: 34
Author(s): Konstantinos Papadimitriou, Rania Anastasiou, Eleni Mavrogonatou, Jochen Blom, Νικολαοσ Παπανδρεου, Stavros J. Hamodrakas, Stéphanie Ferreira, Pierre Renault, Philip Supply, Bruno Pot, Effie Tsakalidou
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-3842-z

Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853
Cited by: 33
Author(s): Huiluo Cao, Yong Lai, Salim Bougouffa, Zeling Xu, Aixin Yan
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-017-4279-0

Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys
Cited by: 18
Author(s): J. Michael Proffitt, Jeremy P. Glenn, Anthony J. Cesnik, Avinash Y.L. Jadhav, Michael R. Shortreed, Lloyd M. Smith, Kylie Kavanagh, Laura A. Cox, Michael Olivier
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-15-54

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms
Cited by: 89
Author(s): Pablo Ivan Pereira Ramos, Renata C. Picão, Luiz Gonzaga Paula de Almeida, Nicholas Costa Barroso Lima, Raquel Girardello, Ana Carolina Polano Vivan, Danilo Elias Xavier, Fernando Gomes Barcellos, Marsileni Pelisson, Eliana Carolina Vespero, Claudine Médigue, Ana Tereza Ribeiro de Vasconcelos, Ana Cristina Gales, Marisa Fabiana Nicolás
Software Mentions: 1
Published: over 12 years ago

10.1186/s12915-021-01013-4

A comprehensive survey of developmental programs reveals a dearth of tree-like lineage graphs and ubiquitous regeneration
Cited by: 5
Author(s): Somya Mani, Tsvi Tlusty
Software Mentions: 1
Published: over 5 years ago

10.1186/s12913-018-2898-z

Improving quality of care through patient-reported outcome measures (PROMs): expert interviews using the NHS PROMs Programme and the Swedish quality registers for knee and hip arthroplasty as examples
Cited by: 45
Author(s): Birgit Prodinger, Paul C. Taylor
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-019-1501-z

Dynamics of fungal communities during Gastrodia elata growth
Cited by: 24
Author(s): Chinho Lin, Yuchuan Wang, Li-Yuan Qin, He Huang, Xian-Lun Yu, Mingzhi Yang, Hanbo Zhang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12920-019-0492-9

Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystem
Cited by: 12
Author(s): Olga V. Saik, Vadim Nimaev, Dilovarkhuja B. Usmonov, П. С. Деменков, T. V. Ivanisenko, Inna N. Lavrik, В. А. Иванисенко
Software Mentions: 1
Published: over 7 years ago

10.1136/bmjopen-2019-034265

Can network science reveal structure in a complex healthcare system? A network analysis using data from emergency surgical services
Cited by: 14
Author(s): Katharina Köhler, Ari Ercole
Software Mentions: 1
Published: over 6 years ago

10.1186/s12882-016-0343-2

Crucial genes associated with diabetic nephropathy explored by microarray analysis
Cited by: 18
Author(s): Zhikui Wang, Zhaoxia Wang, Zhou Zhang, Yueqin Ren
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12870-016-0739-y

Analysis of transcripts differentially expressed between fruited and deflowered ‘Gala’ adult trees: a contribution to biennial bearing understanding in apple
Cited by: 31
Author(s): Baptiste Guitton, Jean-Jacques Kelner, Jean‐Marc Celton, Xavier Sabau, Jean-Pierre Renou, David Chagné, Evelyne Costes
Software Mentions: 1
Published: over 10 years ago

10.1042/BSR20190083

Identification and analysis of genes associated with papillary thyroid carcinoma by bioinformatics methods
Cited by: 13
Author(s): Shulong Zhang, Quan Wang, Qin Han, Huazhong Han, Peng Lu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1003104

Neuronal Functional Connection Graphs among Multiple Areas of the Rat Somatosensory System during Spontaneous and Evoked Activities
Cited by: 16
Author(s): Antonio G. Zippo, Riccardo Storchi, Sara Nencini, Gian Carlo Caramenti, Maurizio Valente, Gabriele Biella
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0240051

The parable of arable land: Characterizing large scale land acquisitions through network analysis
Cited by: 8
Author(s): Roberto Interdonato, Jérémy Bourgoin, Quentin Grislain, Matteo Zignani, Sabrina Gaito, Markus Giger
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-019-0763-8

Identification of aberrantly methylated differentially expressed genes in prostate carcinoma using integrated bioinformatics
Cited by: 15
Author(s): Kai Wu, Xin Yin, Yipeng Jin, Fangfang Liu, Jiangping Gao
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0119309

The Complexity of Crime Network Data: A Case Study of Its Consequences for Crime Control and the Study of Networks
Cited by: 47
Author(s): Amir Rostami, Hernan Mondani
Software Mentions: 1
Published: over 11 years ago

10.3389/frai.2019.00007

An Artificial Intelligence Approach to Regulating Systemic Risk
Cited by: 14
Author(s): Sharyn O’Halloran, Nikolai Nowaczyk
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2021.693142

Unravelling the Shared Genetic Mechanisms Underlying 18 Autoimmune Diseases Using a Systems Approach
Cited by: 13
Author(s): Sreemol Gokuladhas, William Schierding, Evgeniia Golovina, Tayaza Fadason, Justin M. O’Sullivan
Software Mentions: 1
Published: about 5 years ago

10.1002/mbo3.1119

Dynamic change of the gastrointestinal bacterial ecology in cows from birth to adulthood
Cited by: 10
Author(s): Chun Y. Guo, Shasha Ji, Hui Yan, Ya J. Wang, Jing J. Liu, Cao Zhi, Hsi-Chi Yang, Wen J Zhang, Sheng L. Li
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2020.588012

The Large Scale Structure of Human Metabolism Reveals Resilience via Extensive Signaling Crosstalk
Cited by: 9
Author(s): Laura Gómez-Romero, Karina López-Reyes, Enrique Hernández‐Lemus
Software Mentions: 1
Published: over 5 years ago

10.1038/srep28668

Network Modeling Identifies Patient-specific Pathways in Glioblastoma
Cited by: 25
Author(s): Nurcan Tunçbağ, Pamela Milani, Jenny L. Pokorny, Hannah Johnson, Terence T. Sio, Simona Dalin, Dennis O. Iyekegbe, Forest M. White, Jann N. Sarkaria, Ernest Fraenkel
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-020-59015-1

Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit
Cited by: 12
Author(s): Amelieke J. H. Cremers, Jordy P. M. Coolen, Chantal P. Bleeker‐Rovers, A. D. J. van der Geest-Blankert, D. Haverkate, Harrie Hendriks, S. S. V. Henriet, MA Huynen, Eva Kolwijck, Djien Liem, W.J.G. Melchers, John W. A. Rossen, Jan Zoll, Arno van Heijst, Joost Hopman, Heiman Wertheim
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8121985

Outer Membrane Vesicles Derived from Klebsiella pneumoniae Influence the miRNA Expression Profile in Human Bronchial Epithelial BEAS-2B Cells
Cited by: 24
Author(s): Federica Dell’Annunziata, Concetta Paola Ilisso, Carmela Dell’Aversana, Giovanna Greco, Alessandra Coppola, Francesca Martora, Fabrizio Dal Piaz, Giuliana Donadio, Annarita Falanga, Massimiliano Galdiero, Lucia Altucci, Marina Porcelli, Veronica Folliero, Gianluigi Franci
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80405-y

Chronic exposure of humans to high level natural background radiation leads to robust expression of protective stress response proteins
Cited by: 4
Author(s): S Nishad, Pankaj Kumar Chauhan, R. Sowdhamini, Anu Ghosh
Software Mentions: 1
Published: over 5 years ago

10.5402/2012/157135

Classifying Multigraph Models of Secondary RNA Structure Using Graph-Theoretic Descriptors
Cited by: 5
Author(s): Debra J. Knisley, Jeff Knisley, Chelsea Ross, Alissa Rockney
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12957-020-02107-z

Construction and prognostic analysis of miRNA-mRNA regulatory network in liver metastasis from colorectal cancer
Cited by: 15
Author(s): Ruyun Cai, Qian Lü, Wang Da
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph17165707

Automatic Process Comparison for Subpopulations: Application in Cancer Care
Cited by: 5
Author(s): Francesca Marazza, Faiza Allah Bukhsh, Jeroen Geerdink, Onno Vijlbrief, Shreyasi Pathak, Maurice van Keulen, Christin Seifert
Software Mentions: 1
Published: about 6 years ago

10.1007/s00239-021-10018-0

Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure
Cited by: 2
Author(s): Devlin C Moyer, Alan R. Pacheco, David B Bernstein, Daniel Segrè
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.10060

Comparison of the diversity of cultured and total bacterial communities in marine sediment using culture-dependent and sequencing methods
Cited by: 6
Author(s): Meng Wang, Samina Noor, Ran Huan, Congling Liu, Jiayi Li, Qingxin Shi, Yan-Jiao Zhang, Chen Wu, Hui He
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpsyg.2021.623972

Coaching for a Sustainability Transition: Empowering Student-Led Sustainability Initiatives by Developing Skills, Group Identification, and Efficacy Beliefs
Cited by: 10
Author(s): Karen R. S. Hamann, Jana Holz, Gerhard Reese
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.4045

Characterization of a de novo assembled transcriptome of the Common Blackbird (Turdus merula)
Cited by: 3
Author(s): Sven Koglin, Daronja Trense, Michael Wink, Hedwig Sauer‐Gürth, Dieter Thomas Tietze
Software Mentions: 1
Published: over 8 years ago

10.3390/plants10081569

Identification and Characterization of Arbutus unedo L. Endophytic Bacteria Isolated from Wild and Cultivated Trees for the Biological Control of Phytophthora cinnamomi
Cited by: 1
Author(s): João Martins, Aitana Ares, Vinícius Casais, Joana Costa, Jorge Canhoto
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1005340

Contextual Refinement of Regulatory Targets Reveals Effects on Breast Cancer Prognosis of the Regulome
Cited by: 5
Author(s): Erik H. Andrews, Yue Wang, Tian Xia, Wenqing Cheng, Chao Cheng
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1008029

Intercellular communication is required for trap formation in the nematode-trapping fungus Duddingtonia flagrans
Cited by: 53
Author(s): Loubna Youssar, Valentin Wernet, Nicole Hensel, Xi Yu, Heinz Georg Hildebrand, Birgit Schreckenberger, Marius Kriegler, Birgit Hetzer, Phillip A. Frankino, Andrew Dillin, Reinhard Fischer
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1005143

Unsaturation of Very-Long-Chain Ceramides Protects Plant from Hypoxia-Induced Damages by Modulating Ethylene Signaling in Arabidopsis
Cited by: 79
Author(s): Li Xie, Qin Fang Chen, Mo Xian Chen, Yu Lu, Li Huang, Liang Chen, Fengzhu Wang, Fan Xia, Tian Ren Zhu, Jian Wu, Jing Yin, Bin Liao, Jiannong Shi, Jianhua Zhang, Asaph Aharoni, Nan Yao, Wen‐Sheng Shu, Shi Xiao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0202582

Population genetic analysis of aquaculture salmonid populations in China using a 57K rainbow trout SNP array
Cited by: 6
Author(s): Han-Yuan Zhang, Zixia Zhao, Jian Xu, Peng Xu, Qingli Bai, Shiyong Yang, Lin Jiang, Baohua Chen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0146649

Serum Cytokines as Biomarkers in Islet Cell Transplantation for Type 1 Diabetes
Cited by: 12
Author(s): Cornelis R. van der Torren, A. A. Verrijn Stuart, DaHae Lee, Jenny Meerding, Ursule Van de Velde, Daniël Pipeleers, Pieter Gillard, Bart Keymeulen, Wilco de Jager, Bart O. Roep
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0161667

Transcriptome Characterization of Dendrolimus punctatus and Expression Profiles at Different Developmental Stages
Cited by: 18
Author(s): Chungang Yang, Pengcheng Yang, Jing Li, Fan Yang, Aibing Zhang
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0194088

Genomic insights into the broad antifungal activity, plant-probiotic properties, and their regulation, in Pseudomonas donghuensis strain SVBP6
Cited by: 29
Author(s): Betina Cecilia Agaras, Andrés Iriarte, Claudio Valverde
Software Mentions: 1
Published: over 8 years ago

10.1007/s00204-018-2222-z

Intermittent convection-enhanced delivery of GDNF into rhesus monkey putamen: absence of local or cerebellar toxicity
Cited by: 14
Author(s): Matthias Luz, Philip C. Allen, John Bringas, Chris Boiko, Diane E Stockinger, Kristen J. Nikula, Owen T. Lewis, Max Woolley, Hans C. Fibiger, Krystof S. Bankiewicz, Erich Mohr
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0224311

Effects of sonication parameters on transcranial focused ultrasound brain stimulation in an ovine model
Cited by: 66
Author(s): Kyungho Yoon, Wonhye Lee, Ji Eun Lee, Linda Xu, Phillip Croce, Lori Foley, Seung‐Schik Yoo
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0231834

Proteomic analysis of infected primary human leucocytes revealed PSTK as potential treatment-monitoring marker for active and latent tuberculosis
Cited by: 3
Author(s): Benjawan Kaewseekhao, Sittiruk Roytrakul, Yodying Yingchutrakul, Kanin Salao, Wipa Reechaipichitkul, Kiatichai Faksri
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-95098-0

Using normative modelling to detect disease progression in mild cognitive impairment and Alzheimer’s disease in a cross-sectional multi-cohort study
Cited by: 29
Author(s): Walter Hugo Lopez Pinaya, Cristina Scarpazza, Rafael Garcia‐Dias, Sandra Vieira, Lea Baecker, Pedro F. da Costa, Alberto Redolfi, Giovanni B. Frisoni, Michela Pievani, Vince D. Calhoun, João Ricardo Sato, Andrea Mechelli
Software Mentions: 1
Published: about 5 years ago

10.3389/fnana.2018.00106

A Method for the Symbolic Representation of Neurons
Cited by: 5
Author(s): Jose Juan Aliaga Maraver, Susana Mata, Ruth Benavides-Piccione, Javier DeFelipe, Luis Pastor
Software Mentions: 1
Published: over 7 years ago

10.1186/s40478-016-0285-8

A general homeostatic principle following lesion induced dendritic remodeling
Cited by: 19
Author(s): Steffen Platschek, Hermann Cuntz, Mario Vukšić, Thomas Deller, Paul Jedlicka
Software Mentions: 1
Published: over 10 years ago

10.1186/s13195-018-0343-5

Impact of amyloid-beta changes on cognitive outcomes in Alzheimer’s disease: analysis of clinical trials using a quantitative systems pharmacology model
Cited by: 26
Author(s): Hugo Geerts, Äthan Spiros, Patrick D. Roberts
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-13-S8-S7

NetMets: software for quantifying and visualizing errors in biological network segmentation
Cited by: 33
Author(s): David Mayerich, Chris S. Bjornsson, Jonothan Taylor, Badrinath Roysam
Software Mentions: 1
Published: over 14 years ago

10.1186/s12915-019-0732-7

Optogenetic activation of parvalbumin and somatostatin interneurons selectively restores theta-nested gamma oscillations and oscillation-induced spike timing-dependent long-term potentiation impaired by amyloid β oligomers
Cited by: 44
Author(s): Kyerl Park, Jae-Dong Lee, Hyun Jae Jang, Blake A. Richards, Michael Köhl, Jeehyun Kwag
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2202-14-S1-P301

Predicting the location of the axon initial segment using spike waveform analysis: simulations of retinal ganglion cell physiology
Cited by: 0
Author(s): Matias I. Maturana, Raymond Wong, Tania Kameneva, Shaun L. Cloherty, M. Ibbotson, Alex E. Hadjinicolaou, David B. Grayden, Anthony N. Burkitt, Hamish Meffin, Brendan J. O’Brien
Software Mentions: 1
Published: about 13 years ago

10.3390/cancers11020127

Tribbles Homolog 3 Involved in Radiation Response of Triple Negative Breast Cancer Cells by Regulating Notch1 Activation
Cited by: 21
Author(s): Yueh Chun Lee, Wen Ling Wang, Wei Chao Chang, Yuhao Huang, Guan Hong, Hui Lin Wang, Ying-Hsiang Chou, Hsien-Chun Tseng, Hsueh Te Lee, Shao Ti Li, Hsin Lin Chen, Chun Chi Wu, Huei Fan Yang, Bing Yen Wang, Wen‐Wei Chang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2202-16-S1-P152

Motor cortex neurons: from experiment to model via evolutionary algorithms
Cited by: 0
Author(s): Samuel A. Neymotin, Benjamin A. Suter, Michele Migliore, Salvador Dura‐Bernal, Gordon M. Shepherd, William W. Lytton
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2202-13-S1-P91

CPP alters theta/gamma oscillations in rat hippocampus: simulation and experiment
Cited by: 2
Author(s): Mohamed Sherif, Jeremy M. Barry, Samuel A. Neymotin, William W. Lytton
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2202-12-S1-P322

Modeling UBC intrinsic excitability
Cited by: 0
Author(s): Sathyaa Subramaniyam, Paola Perin, Sergio Solinas, Egidio D’Angelo
Software Mentions: 1
Published: about 15 years ago

10.1016/j.dib.2016.03.071

Datasets for transcriptomic analyses of maize leaves in response to Asian corn borer feeding and/or jasmonic acid
Cited by: 4
Author(s): Yuliang Zhang, Qixing Huang, Kayla K. Pennerman, Jiujiang Yu, Zhixin Liu, Anping Guo, Guohua Yin
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2202-14-S1-P94

Challenges of declarative modeling of conductance-based neurons in diverse simulation environments
Cited by: 0
Author(s): Ivan Raikov, Thomas G Close, Shyam Kumar S, Erik De Schutter
Software Mentions: 1
Published: about 13 years ago

10.1002/ece3.5564

Effects of natural vegetative restoration on soil fungal and bacterial communities in bare patches of the southern Taihang Mountains
Cited by: 5
Author(s): He Zhao, Xuanzhen Li, Zhiming Zhang, Jun Yang, Ye Zhao, Zi Yang, Qili Hu
Software Mentions: 1
Published: about 7 years ago

10.1186/s12868-019-0527-3

Altered excitability of small cutaneous nerve fibers during cooling assessed with the perception threshold tracking technique
Cited by: 7
Author(s): Rósa Hugosdóttir, Carsten Dahl Mørch, Cecilia Klitgaard Jørgensen, Camilla Winther Nielsen, Mathias Vassard Olsen, Mads Jozwiak Pedersen, Jenny Tigerholm
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2202-13-S1-P119

Reaction-diffusion modeling in the NEURON simulator
Cited by: 0
Author(s): Robert A. McDougal, Yosef Skolnick, James C. Schaff, William W. Lytton, Michael L. Hines
Software Mentions: 1
Published: about 14 years ago

10.3389/fbioe.2017.00056

Complete Genome Sequence and Comparative Analysis of Staphylococcus condimenti DSM 11674, a Potential Starter Culture Isolated from Soy Sauce Mash
Cited by: 1
Author(s): Hai‐Lin Dong, Jian Chen, Andrew K. Hastings, Lan-Ping Guo, Beiwen Zheng
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2202-12-S1-P207

Improved parameter fitting for models of young and aged neurons
Cited by: 0
Author(s): Christina M. Weaver, Aniruddha Yadav, Patrick R. Hof, Jennifer I. Luebke
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2202-12-S1-P191

Scaling of a biophysical neocortical attractor model using Parallel NEURON on the Blue Gene /P
Cited by: 1
Author(s): David Silverstein, Anders Lansner
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2202-13-S1-P93

Modeling predicts that parameters shaping action potentials and synaptic responses differ in pyramidal neurons of the visual and prefrontal cortices
Cited by: 0
Author(s): Christina M. Weaver, Aniruddha Yadav, Joseph M. Amatrudo, Patrick R. Hof, Jennifer I. Luebke
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2202-12-S1-P29

Development of NeuroML version 2.0: greater extensibility, support for abstract neuronal models and interaction with Systems Biology languages
Cited by: 3
Author(s): Padraig Gleeson, Sharon Crook, Angus Silver, Robert C. Cannon
Software Mentions: 1
Published: about 15 years ago