10.1186/s13195-021-00814-7

An integrative multi-omics approach reveals new central nervous system pathway alterations in Alzheimer’s disease
Cited by: 40
Author(s): Christopher Clark, Loïc Dayon, Mojgan Masoodi, Gene L. Bowman, Julius Popp
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-021-04386-z

EvoLaps: a web interface to visualize continuous phylogeographic reconstructions
Cited by: 0
Author(s): François Chevenet, Denis Fargette, Stéphane Guindon, Anne‐Laure Bañuls
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-89516-6

The lower respiratory tract microbiome of critically ill patients with COVID-19
Cited by: 42
Author(s): Paolo Gaibani, Elisa Viciani, Michele Bartoletti, Russell E. Lewis, Tommaso Tonetti, Donatella Lombardo, Andréa Castagnetti, Federica Bovo, Clara Solera Horna, Marco Ranieri, Pierluigi Viale, Maria Carla Re, Simone Ambretti
Software Mentions: 3
Published: over 5 years ago

10.1186/s12966-020-01054-y

Physical activity and sedentary time of youth in structured settings: a systematic review and meta-analysis
Cited by: 39
Author(s): Rafael Miranda Tassitano, R. Glenn Weaver, Maria Cecília Marinho Tenório, Keith Brazendale, Michael W. Beets
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph17186573

Machine Learning-Based Activity Pattern Classification Using Personal PM2.5 Exposure Information
Cited by: 4
Author(s): Jinsoo Park, Sungroul Kim
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijerph18041823

Towards a Semi-Automatic Early Warning System for Vector-Borne Diseases
Cited by: 0
Author(s): Panagiotis Pergantas, Nikos E. Papanikolaou, Chrisovalantis Malesios, Andreas Tsatsaris, Marios Kondakis, Iokasti Perganta, Yiannis Tselentis, Nıkos Demiris
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.38621

CD95/Fas ligand mRNA is toxic to cells
Cited by: 32
Author(s): William Putzbach, Ashley Haluck-Kangas, Quan Gao, Aishe A. Sarshad, Elizabeth T. Bartom, Austin Stults, Abdul Qadir, Markus Hafner, Marcus E. Peter
Software Mentions: 3
Published: almost 8 years ago

10.3390/ani9110927

A Study of Genomic Prediction of 12 Important Traits in the Domesticated Yak (Bos grunniens)
Cited by: 3
Author(s): Donghai Fu, Xiaoming Ma, Jia Chen, Min Chen, Qinhui Lei, Zhiping Wen, Xiaoyun Wu, Jie Pei, Pengjia Bao, Xuezhi Ding, Xian Guo, Ping Yan, Chunnian Liang
Software Mentions: 3
Published: almost 7 years ago

10.1155/2015/146250

An Association Rule Mining Approach to Discover lncRNAs Expression Patterns in Cancer Datasets
Cited by: 7
Author(s): Paolo Cremaschi, Roberta Carriero, Stefania Astrologo, Caterina Colì, Antonella Lisa, Silvia Parolo, Silvia Bione
Software Mentions: 3
Published: over 11 years ago

10.1155/2020/5156304

Comprehensive Analyses of miRNA-mRNA Network and Potential Drugs in Idiopathic Pulmonary Arterial Hypertension
Cited by: 8
Author(s): Chan Li, Zeyu Zhang, Qian Xu, Ruizheng Shi
Software Mentions: 3
Published: about 6 years ago

10.1007/s12551-018-0490-8

Mining data and metadata from the gene expression omnibus
Cited by: 64
Author(s): Zichen Wang, Alexander Lachmann, Avi Ma’ayan
Software Mentions: 3
Published: over 7 years ago

10.1186/bcr3150

Relevance of PTEN loss in brain metastasis formation in breast cancer patients
Cited by: 87
Author(s): Harriet Wikman, Katrin Lamszus, Niclas Detels, Liubov Uslar, Michaela Wrage, Christian Benner, Ina Hohensee, Bauke Ylstra, Kathrin Eylmann, Marc Zapatka, Guido Sauter, Dirk Kemming, Markus Glatzel, Volkmar Müller, Manfred Westphal, Klaus Pantel
Software Mentions: 3
Published: over 14 years ago

10.34133/2021/9812910

Automatic Fruit Morphology Phenome and Genetic Analysis: An Application in the Octoploid Strawberry
Cited by: 12
Author(s): Laura M. Zingaretti, Amparo Monfort, Miguel Pérez‐Enciso
Software Mentions: 3
Published: over 5 years ago

10.1007/s00262-020-02718-1

Immune checkpoint-related serum proteins and genetic variants predict outcomes of localized prostate cancer, a cohort study
Cited by: 35
Author(s): Qinchuan Wang, Yuanqing Ye, Hao Yu, Shu-Hong Lin, Huakang Tu, Dong Liang, David W. Chang, Maosheng Huang, Xifeng Wu
Software Mentions: 3
Published: almost 6 years ago

10.2196/16159

Maintaining Physical Activity Level Through Team-Based Walking With a Mobile Health Intervention: Cross-Sectional Observational Study
Cited by: 3
Author(s): Yuri Hamamatsu, Hiroo Ide, Makoto Kakinuma, Yuji Furui
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0173810

Genome-wide association analysis in dogs implicates 99 loci as risk variants for anterior cruciate ligament rupture
Cited by: 36
Author(s): Louise Baker, Brian Kirkpatrick, Guilherme J. M. Rosa, Daniel Gianola, Bruno D. Valente, Julia P. Sumner, Wendy I. Baltzer, Zhengling Hao, Emily E. Binversie, Nicola J. Volstad, Alexander M Piazza, Susannah J. Sample, Peter Muir
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0035742

Leaf Trait-Environment Relationships in a Subtropical Broadleaved Forest in South-East China
Cited by: 65
Author(s): Wenzel Kröber, Martin Böhnke, Erik Welk, Christian Wirth, Helge Bruelheide
Software Mentions: 3
Published: over 14 years ago

10.1186/s12859-021-04150-3

Analysis of single-cell RNA sequencing data based on autoencoders
Cited by: 12
Author(s): Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Píetro Lió, Ana Cvejic
Software Mentions: 3
Published: about 5 years ago

10.3390/cancers13081903

Circular RNA in Chemonaive Lymph Node Negative Colon Cancer Patients
Cited by: 0
Author(s): I. van den Berg, Marcel Smid, Robert R.J. Coebergh van den Braak, Carolien H.M. van Deurzen, Vanja de Weerd, John A. Foekens, Jan N.M. IJzermans, John W.M. Martens, Saskia M. Wilting
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.50705

Cardiac mitochondrial function depends on BUD23 mediated ribosome programming
Cited by: 10
Author(s): Matthew Baxter, Maria Voronkov, Toryn Poolman, Gina L. J. Galli, Christian Pinali, Laurence Goosey, Abigail Knight, Karolina Krakowiak, Robert Maidstone, Mudassar Iqbal, Min Zi, Sukhpal Prehar, Elizabeth J. Cartwright, Julie Gibbs, Laura Matthews, Antony Adamson, Neil Humphreys, Pedro Rebelo-Guiomar, Michal Minczuk, David A. Bechtold, A. S. I. Loudon, David Ray
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0243666

Quantile regression in genomic selection for oligogenic traits in autogamous plants: A simulation study
Cited by: 4
Author(s): Gabriela França Oliveira, Ana Carolina Campana Nascimento, Moysés Nascimento, Isabela de Castro Sant’Anna, Juan Vicente Romero, Camila Ferreira Azevedo, Leonardo Lopes Bhering, Eveline Teixeira Caixeta Moura
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0236853

Near-infrared spectroscopy outperforms genomics for predicting sugarcane feedstock quality traits
Cited by: 12
Author(s): Mateus Teles Vital Gonçalves, Gota Morota, Paulo Mafra de Almeida Costa, Pedro Marcus Pereira Vidigal, Márcio Henrique Pereira Barbosa, Luiz Alexandre Peternelli
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0115911

The Transcriptomic and Proteomic Landscapes of Bone Marrow and Secondary Lymphoid Tissues
Cited by: 14
Author(s): Sandra Andersson, Kenneth Nilsson, Linn Fagerberg, Björn M. Hallström, Christer Sundström, Anna Danielsson, Karolina Edlund, Mathias Uhlén, Anna Asplund
Software Mentions: 3
Published: over 11 years ago

10.7554/eLife.58828

EDF1 coordinates cellular responses to ribosome collisions
Cited by: 79
Author(s): Niladri K. Sinha, Alban Ordureau, Katharina Best, James A. Saba, Boris Zinshteyn, Elayanambi Sundaramoorthy, Amit Fulzele, Danielle M. Garshott, T. Denk, Matthias Thoms, João A. Paulo, J. Wade Harper, Eric J. Bennett, Roland Beckmann, Rachel Green
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.57861

Profiling of myristoylation in Toxoplasma gondii reveals an N-myristoylated protein important for host cell penetration
Cited by: 19
Author(s): Malgorzata Broncel, Caia Dominicus, Luis Vigetti, Stephanie D. Nofal, Edward Bartlett, Bastien Touquet, Alex Hunt, Bethan A. Wallbank, Stefania Federico, Stephen Matthews, J. M. Young, Edward W. Tate, Isabelle Tardieux, Moritz Treeck
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0187901

drLumi: An open-source package to manage data, calibrate, and conduct quality control of multiplex bead-based immunoassays data analysis
Cited by: 24
Author(s): Hèctor Sanz, John J. Aponte, Jaroslaw Harezlak, Dong Yan, Ana Ayestarán, Augusto Nhabomba, Maxmillian Mpina, Obiang Régis Maurin, Núria Díez-Padrisa, Ruth Aguilar, Gemma Moncunill, Agnandij Selidji Todagbe, Claudia Daubenberger, Carlota Dobaño, Clarissa Valim
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0247756

How varying parameters impact insecticide resistance bioassay: An example on the worldwide invasive pest Drosophila suzukii
Cited by: 11
Author(s): Lucile Blouquy, Claire Mottet, Jérôme Olivares, Christophe Plantamp, Myriam Siegwart, Benoît Barrès
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0066764

The Distribution of Fruit and Seed Toxicity during Development for Eleven Neotropical Trees and Vines in Central Panama
Cited by: 14
Author(s): Noelle G. Beckman
Software Mentions: 3
Published: about 13 years ago

10.1371/journal.pone.0253934

Characterization of clopyralid resistance in lawn burweed (Soliva sessilis)
Cited by: 4
Author(s): Hossein Ghanizadeh, Fengshuo Li, Lulu He, K.C. Harrington
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0015904

Thrombin Induces Macrophage Migration Inhibitory Factor Release and Upregulation in Urothelium: A Possible Contribution to Bladder Inflammation
Cited by: 16
Author(s): Pedro L. Vera, Terra E. Wolfe, Alexander E. Braley, Katherine L. Meyer-Siegler
Software Mentions: 3
Published: over 15 years ago

10.3390/cells9051107

Ginsenoside Rg1 Acts as a Selective Glucocorticoid Receptor Agonist with Anti-Inflammatory Action without Affecting Tissue Regeneration in Zebrafish Larvae
Cited by: 17
Author(s): Min He, Mahmoud Halima, Yujia Xie, Marcel J. M. Schaaf, Annemarie H. Meijer, Mei Wang
Software Mentions: 3
Published: over 6 years ago

10.1016/j.dib.2016.01.016

Molecular determinants and interaction data of cyclic peptide inhibitor with the extracellular domain of TrkB receptor
Cited by: 5
Author(s): Nitin Chitranshi, Vivek Kumar Gupta, Yogita Dheer, Veer Bala Gupta, Roshana Vander Wall, Stuart L. Graham
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2018.01118

The Value of Expanding the Training Population to Improve Genomic Selection Models in Tetraploid Potato
Cited by: 23
Author(s): Elsa Sverrisdóttir, Ea Høegh Riis Nielsen, Heidi Øllegaard Johnsen, Hanne Grethe Kirk, Torben Asp, Luc Janss, Glenn Bryan, Kåre Lehmann Nielsen
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2020.00042

Suitability of Single-Nucleotide Polymorphism Arrays Versus Genotyping-By-Sequencing for Genebank Genomics in Wheat
Cited by: 24
Author(s): Jianting Chu, Yusheng Zhao, Sebastian Beier, Albert W. Schulthess, Nils Stein, Norman Philipp, Marion S. Röder, Jochen C. Reif
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0238809

MicroRNA expression profiles in molecular subtypes of clear-cell renal cell carcinoma are associated with clinical outcome and repression of specific mRNA targets
Cited by: 3
Author(s): Annelies Verbiest, Vincent van Hoef, Cristina Rodríguez‐Antona, Jesús García-Donás, Osvaldo Graña‐Castro, Maarten Albersen, Marcella Baldewijns, Annouschka Laenen, Eduard Roussel, Patrick Schöffski, Agnieszka Woźniak, Stefano Caruso, Gabrielle Couchy, Jessica Zucman–Rossi, Benoît Beuselinck
Software Mentions: 3
Published: almost 6 years ago

10.1534/g3.115.019745

Comparison of Genomic Selection Models to Predict Flowering Time and Spike Grain Number in Two Hexaploid Wheat Doubled Haploid Populations
Cited by: 43
Author(s): Saravanan Thavamanikumar, Rudy Dolferus, Bala R. Thumma
Software Mentions: 3
Published: almost 11 years ago

10.7554/eLife.57390

Population-scale proteome variation in human induced pluripotent stem cells
Cited by: 38
Author(s): Bogdan Mirauta, Daniel D Seaton, Dalila Bensaddek, Alejandro Brenes, Marc Jan Bonder, Helena Kilpinen, Chukwuma A. Agu, Alex Alderton, Petr Danecek, Rachel Denton, Richard Durbin, Daniel J Gaffney, Ângela Gonçalves, Reena Halai, Sarah Harper, Christopher M. Kirton, Anja Kolb-Kokocinski, Andreas Leha, Shane McCarthy, Yasin Memari, Minal Patel, Ewan Birney, Francesco Paolo Casale, Laura Clarke, Peter W. Harrison, Helena Kilpinen, Ian Streeter, Davide Denovi, Oliver Stegle, Angus I. Lamond, Ruta Meleckyte, Natalie Moens, Fiona M. Watt, Willem H. Ouwehand, Philip L. Beales, Oliver Stegle, Angus I. Lamond
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.01630

A proteomic chronology of gene expression through the cell cycle in human myeloid leukemia cells
Cited by: 123
Author(s): Tony Ly, Yasmeen Ahmad, Adam Shlien, Dominique N. Soroka, Allie Mills, Michael J. Emanuele, Michael R. Stratton, Angus I. Lamond
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0226905

Identification and characterization of miRNAs involved in cold acclimation of zebrafish ZF4 cells
Cited by: 9
Author(s): Xiangqin Ji, Penglei Jiang, Juntao Luo, Mengjia Li, Yajing Bai, Junfang Zhang, Bingshe Han
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0154556

The Ontology for Biomedical Investigations
Cited by: 228
Author(s): Anita Bandrowski, Ryan R. Brinkman, Mathias Brochhausen, Matthew Brush, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot, Dirk Derom, Michel Dumontier, Liju Fan, Jennifer Fostel, Gilberto Fragoso, F. Gibson, Alejandra González-Beltrán, Melissa Haendel, Yongqun He, Mervi Heiskanen, Tina Hernandez‐Boussard, Mark A. Jensen, Yuling Lin, Allyson L. Lister, Phillip Lord, James Malone, Elisabetta Manduchi, Monnie McGee, Norman Morrison, James A. Overton, Helen Parkinson, Bjoern Peters, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H. Scheuermann, Daniel Schober, Barry Smith, Larisa Soldatova, Christian J. Stoeckert, Chris Taylor, Carlo Torniai, Jessica A. Turner, Randi Vita, Patricia L. Whetzel, Jie Zheng
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2017.00907

Environmental Influences on the Growing Season Duration and Ripening of Diverse Miscanthus Germplasm Grown in Six Countries
Cited by: 31
Author(s): Christopher Nunn, Astley Hastings, Olena Kalinina, Menşure Özgüven, Heinrich Schüle, I.G. Tarakanov, Tim van der Weijde, Alexander Anisimov, Yasir Iqbal, Andreas Kiesel, N. F. Khokhlov, Jon McCalmont, Heike Meyer, Michał Mos, Kai‐Uwe Schwarz, Luisa M. Trindade, Iris Lewandowski, John Clifton‐Brown
Software Mentions: 3
Published: about 9 years ago

10.1093/rb/rbz038

Quantification of rhBMP2 in bioactive bone materials
Cited by: 2
Author(s): Huan Lian, Han Wang, Qianqian Han, Chun-Ren Wang
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-51645-4

Predicting low-concentration effects of pesticides
Cited by: 17
Author(s): Matthias Liess, Sebastian Henz, Saskia Knillmann
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0164814

Anthropogenic Matrices Favor Homogenization of Tree Reproductive Functions in a Highly Fragmented Landscape
Cited by: 7
Author(s): Magda Silva Carneiro, Caroline Cambraia Furtado Campos, Luiz Alberto Beijo, Flávio Nunes Ramos
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0245367

Estimating brown bear abundance and harvest rate on the southern Alaska Peninsula
Cited by: 3
Author(s): Earl F. Becker, David Crowley
Software Mentions: 3
Published: over 5 years ago

10.1186/s12711-016-0192-2

Genomic prediction of unordered categorical traits: an application to subpopulation assignment in German Warmblood horses
Cited by: 8
Author(s): Claas Heuer, C. Scheel, Jens Tetens, Christa Kühn, Georg Thaller
Software Mentions: 3
Published: over 10 years ago

10.1111/j.1525-142X.2010.00400.x

Molecular signaling in zebrafish development and the vertebrate phylotypic period
Cited by: 37
Author(s): Aurélie Comte, Julien Roux, Marc Robinson‐Rechavi
Software Mentions: 3
Published: over 16 years ago

10.1038/s41598-020-69381-5

Prospects of GWAS and predictive breeding for European winter wheat’s grain protein content, grain starch content, and grain hardness
Cited by: 37
Author(s): Quddoos H. Muqaddasi, Jonathan Brassac, Erhard Ebmeyer, Sonja Kollers, Viktor Korzun, O. Argillier, Gunther Stiewe, Jörg Plieske, Martin W. Ganal, Marion S. Röder
Software Mentions: 3
Published: about 6 years ago

10.3389/fendo.2021.628907

Identification of Key Pathways and Genes in Obesity Using Bioinformatics Analysis and Molecular Docking Studies
Cited by: 7
Author(s): Harish Joshi, Basavaraj Vastrad, Nidhi Joshi, Chanabasayya Vastrad, Anandkumar Tengli, Iranna Kotturshetti
Software Mentions: 3
Published: about 5 years ago

10.1186/2047-783X-18-44

RETRACTED ARTICLE: Gene expression profiling analysis of hepatocellular carcinoma
Cited by: 4
Author(s): Deyong Kong, Heming Chen, Weiqun Chen, Shuiyi Liu, Hui Wang, Tangwei Wu, Hongda Lu, Qing Kong, Xiaodong Huang, Zhongxin Lu
Software Mentions: 3
Published: almost 13 years ago

10.3389/fbioe.2020.584614

Revisiting the Growth Modulon of Corynebacterium glutamicum Under Glucose Limited Chemostat Conditions
Cited by: 5
Author(s): Michaela Graf, Thorsten Haas, Attila Teleki, André Feith, Martin Cerff, Wolfgang Wiechert, Katharina Nöh, Tobias Busche, Jörn Kalinowski, Ralf Takors
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.28270

Native KCC2 interactome reveals PACSIN1 as a critical regulator of synaptic inhibition
Cited by: 42
Author(s): Vivek Mahadevan, C. Sahara Khademullah, Zahra Dargaei, Jonah Chevrier, Pavel Uvarov, Julian Kwan, Richard D. Bagshaw, Tony Pawson, Andrew Emili, Yves De Koninck, Victor Anggono, Matti S. Airaksinen, Melanie A. Woodin
Software Mentions: 3
Published: almost 9 years ago

10.3389/fimmu.2019.02136

Identification and Characterization of Post-activated B Cells in Systemic Autoimmune Diseases
Cited by: 37
Author(s): Sarah Y. Weißenberg, Franziska Szelinski, Eva Schrezenmeier, Ana‐Luisa Stefanski, Annika Wiedemann, Héctor Rincón‐Arévalo, Anna Welle, Annemarie Jungmann, Karl Nordström, Jörn Walter, Juliana Imgenberg‐Kreuz, Gunnel Nordmark, Lars Rönnblom, Prathyusha Bachali, Michelle D. Catalina, Amrie C. Grammer, Peter E. Lipsky, Andreia C. Lino, Thomas Dörner
Software Mentions: 3
Published: almost 7 years ago

10.1002/ece3.6294

Manipulating the strength of organism–environment feedback increases nonlinearity and apparent hysteresis of ecosystem response to environmental change
Cited by: 4
Author(s): Aurélie Garnier, Florence D. Hulot, Owen L. Petchey
Software Mentions: 3
Published: over 6 years ago

10.3390/v12090991

Comprehensive Analysis of Codon Usage on Porcine Astrovirus
Cited by: 11
Author(s): Huiguang Wu, Zhengyu Bao, Chunxiao Mou, Zhenhai Chen, Jingwen Zhao
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms20010016

Clinically Relevant Post-Translational Modification Analyses—Maturing Workflows and Bioinformatics Tools
Cited by: 34
Author(s): Dana Pascovici, Jemma X. Wu, Matthew J. McKay, Chitra Joseph, Zainab Noor, Karthik Shantharam Kamath, Yunqi Wu, Shoba Ranganathan, Vivek Gupta, Mehdi Mirzaei
Software Mentions: 3
Published: over 7 years ago

10.1534/g3.119.401031

Loss of N-Glycanase 1 Alters Transcriptional and Translational Regulation in K562 Cell Lines
Cited by: 13
Author(s): William F. Mueller, Petra Jakob, Han Sun, Sandra Clauder‐Münster, Sonja Ghidelli-Disse, Diana Paola Serralde Ordóñez, Markus Böesche, Marcus Bantscheff, Paul Collier, Bettina Haase, Vladimı́r Beneš, Malte Paulsen, Peter Sehr, Joe Lewis, Gerard Drewes, Lars M. Steinmetz
Software Mentions: 3
Published: over 6 years ago

10.1111/1751-7915.12338

Succession of lignocellulolytic bacterial consortia bred anaerobically from lake sediment
Cited by: 10
Author(s): Elisa Korenblum, Diego Javier Jiménez, Jan Dirk van Elsas
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms8081145

Fungal Community in Antarctic Soil Along the Retreating Collins Glacier (Fildes Peninsula, King George Island)
Cited by: 10
Author(s): Juliana Aparecida dos Santos, Edenilson Meyer, Lara Durães Sette
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-91503-w

Colonisation dynamics of Listeria monocytogenes strains isolated from food production environments
Cited by: 12
Author(s): Jessica Gray, P. Scott Chandry, Mandeep Kaur, Chawalit Kocharunchitt, Séamus Fanning, John P. Bowman, Edward M. Fox
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.7744

Microbial communities associated with the black morel <i>Morchella sextelata</i> cultivated in greenhouses
Cited by: 41
Author(s): Gian Maria Niccolò Benucci, Reid Longley, Peng Zhang, Qi Zhao, Gregory Bonito, Fuqiang Yu
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0086209

How Does Pollen Chemistry Impact Development and Feeding Behaviour of Polylectic Bees?
Cited by: 144
Author(s): Maryse Vanderplanck, Romain Moerman, Pierre Rasmont, Georges Lognay, Bernard Wathelet, Ruddy Wattiez, Denis Michez
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0099949

Structure, Composition and Metagenomic Profile of Soil Microbiomes Associated to Agricultural Land Use and Tillage Systems in Argentine Pampas
Cited by: 154
Author(s): Belén Carbonetto, Nicolás Rascovan, Roberto Álvarez, Alejandro Mentaberry, Martı́n Vázquez
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0213355

A different suite: The assemblage of distinct fungal communities in water-damaged units of a poorly-maintained public housing building
Cited by: 17
Author(s): Iman Sylvain, Rachel Adams, John W. Taylor
Software Mentions: 3
Published: over 7 years ago

10.3389/fbioe.2019.00214

Computational Assessment of the Pharmacological Profiles of Degradation Products of Chitosan
Cited by: 27
Author(s): Diana Larisa Roman, Marin Roman, Claudia Som, Mélanie Schmutz, Edgar García Hernández, Peter Wick, Tommaso Casalini, Giuseppe Perale, Vasile Ostafe, Adriana Isvoran
Software Mentions: 3
Published: almost 7 years ago

10.1111/cobi.13437

Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats
Cited by: 65
Author(s): Eva Egelyng Sigsgaard, Felipe Torquato, Tobias Guldberg Frøslev, Alec B. M. Moore, Johan Molgard Sorensen, Pedro Range, Radhouane Ben‐Hamadou, Steffen Bach, Peter Rask Møller, Philip Francis Thomsen
Software Mentions: 3
Published: over 6 years ago

10.1186/gb-2010-11-8-r80

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development
Cited by: 29
Author(s): Noëlle Billon, Raivo Kolde, Jüri Reimand, Miguel Caetano Monteiro, Meelis Kull, Hedi Peterson, Konstantin Tretyakov, Priit Adler, Brigitte Wdziekonski, Jaak Vilo, Christian Dani
Software Mentions: 3
Published: over 16 years ago

10.1186/gb-2012-13-4-r31

Genetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panel
Cited by: 33
Author(s): Marieke Simonis, Santosh S. Atanur, Sam E.V. Linsen, Victor Guryev, Frans-Paul Ruzius, Laurence Gamé, Nico Lansu, Ewart de Bruijn, Sebastiaan van Heesch, Steven J.M. Jones, Michal Pravenec, Tim Aitman, Edwin Cuppen
Software Mentions: 3
Published: over 14 years ago

10.1186/s13059-016-0992-2

CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Cited by: 330
Author(s): Jonathan Cairns, Paula Freire-Pritchett, Steven W. Wingett, Csilla Várnai, Andrew Dimond, Vincent Plagnol, Daniel R. Zerbino, Stefan Schoenfelder, Biola M. Javierre, Cameron S. Osborne, Peter Fraser, Mikhail Spivakov
Software Mentions: 3
Published: about 10 years ago

10.1186/s13059-021-02323-0

Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication
Cited by: 46
Author(s): Gareth Benjamin Gillard, Lars Grønvold, Line Lieblein Røsæg, Matilde Mengkrog Holen, Øystein Monsen, Ben F. Koop, Eric B. Rondeau, Manu Kumar Gundappa, J. Mendoza, Daniel J. Macqueen, Rori V. Rohlfs, Simen Rød Sandve, Torgeir R. Hvidsten
Software Mentions: 3
Published: over 5 years ago

10.3390/biomedicines8090311

Exploring the Role of Gut Microbiota in Major Depressive Disorder and in Treatment Resistance to Antidepressants
Cited by: 26
Author(s): Andrea Fontana, Mirko Manchia, Concetta Panebianco, Pasquale Paribello, Carlo Arzedi, Eleonora Cossu, Mario Garzilli, Maria Antonietta Montis, Andrea Mura, Claudia Pisanu, Donatella Congiu, Massimiliano Copetti, Federica Pinna, Bernardo Carpiniello, Alessio Squassina, Valerio Pazienza
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pntd.0008178

Risk prediction of two types of potential snail habitats in Anhui Province of China: Model-based approaches
Cited by: 10
Author(s): Jun Zhang, Ming Yue, Yan Hu, Robert Bergquist, Chuan Su, Fenghua Gao, Zhiguo Cao, Zhijie Zhang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0229460

A machine learning-based linguistic battery for diagnosing mild cognitive impairment due to Alzheimer’s disease
Cited by: 4
Author(s): Sylvester Olubolu Orimaye, Karl Goodkin, Ossama Abid Riaz, Jean Maurice Miranda Salcedo, Thabit Al-Khateeb, Adeola Awujoola, Patrick Olumuyiwa Sodeke
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0204820

Potential use of text classification tools as signatures of suicidal behavior: A proof-of-concept study using Virginia Woolf’s personal writings
Cited by: 14
Author(s): Gabriela de Ávila Berni, Francisco Diego Rabelo‐da‐Ponte, Diego Librenza-Garcia, Manuela Vianna Boeira, Márcia Kauer-Sant’Anna, Ives Cavalcante Passos, Flávio Kapczinski
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0220683

On the use of in-silico simulations to support experimental design: A case study in microbial inactivation of foods
Cited by: 9
Author(s): Alberto Garre, Jose Lucas Peñalver-Soto, A. Esnoz, Asunción Iguaz, Pablo Salvador Fernández Escámez, José A. Egea
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0198874

Whole blood transcriptome analysis in amyotrophic lateral sclerosis: A biomarker study
Cited by: 35
Author(s): Wouter van Rheenen, Frank P. Diekstra, Oliver Harschnitz, Henk Jan Westeneng, Kristel R. van Eijk, Christiaan G J Saris, Ewout J N Groen, Michael A. van Es, Hylke M. Blauw, Paul W.J. van Vught, Jan H. Veldink, Leonard H van den Berg
Software Mentions: 3
Published: about 8 years ago

10.3390/ijms21114045

Gut–Brain Axis and Neurodegeneration: State-of-the-Art of Meta-Omics Sciences for Microbiota Characterization
Cited by: 43
Author(s): Bruno Tilocca, Luisa Pieroni, Alessio Soggiu, Domenico Britti, L. Bonizzi, Paola Roncada, Viviana Greco
Software Mentions: 3
Published: about 6 years ago

10.1093/aobpla/plu078

Introduced and invasive cactus species: a global review
Cited by: 122
Author(s): Ana Novoa, Johannes J. Le Roux, Mark P. Robertson, John R. Wilson, David M. Richardson
Software Mentions: 3
Published: over 11 years ago

10.1128/mBio.02684-19

Contextual Flexibility in Pseudomonas aeruginosa Central Carbon Metabolism during Growth in Single Carbon Sources
Cited by: 49
Author(s): Stephen K. Dolan, Michael Kohlstedt, Stephen Trigg, Pedro P. Vallejo Ramirez, Clemens F. Kaminski, Christoph Wittmann, Martin Welch
Software Mentions: 3
Published: over 6 years ago

10.1128/mSphere.00305-16

Coordinate Regulation of Antimycin and Candicidin Biosynthesis
Cited by: 34
Author(s): Thomas C McLean, Paul A. Hoskisson, Ryan F. Seipke
Software Mentions: 3
Published: over 9 years ago

10.3390/jof4030081

Identification of Antifungal Targets Based on Computer Modeling
Cited by: 10
Author(s): Elena Bencúrová, Shishir Gupta, Edita Sarukhanyan, Thomas Dandekar
Software Mentions: 3
Published: about 8 years ago

10.1155/2017/2568706

Genomewide Expression and Functional Interactions of Genes under Drought Stress in Maize
Cited by: 34
Author(s): Nepolean Thirunavukkarasu, R.C. Sharma, Nidhi Singh, Kaliyugam Shiriga, Sweta Mohan, Swati Mittal, Mittal Shikha, Mallana Gowdra Mallikarjuna, Atmakuri Ramakrishna Rao, Prasanta K. Dash, Firoz Hossain, H. S. Gupta
Software Mentions: 3
Published: over 9 years ago

10.1002/ece3.6793

Functional shifts in estuarine zooplankton in response to climate variability
Cited by: 9
Author(s): Anna Jansson, Riina Klais‐Peets, Evelina Grinienė, Gunta Rubene, А. С. Семенова, Aleksandra M. Lewandowska, Jonna Engström‐Öst
Software Mentions: 3
Published: almost 6 years ago

10.3390/ijms21239162

Bringing New Methods to the Seed Proteomics Platform: Challenges and Perspectives
Cited by: 18
Author(s): Galina Smolikova, Daria Gorbach, Elena Lukasheva, Gregory Mavropolo-Stolyarenko, Tatiana Bilova, Alena Soboleva, Alexander Tsarev, E. V. Romanovskaya, Е. P. Podolskaya, Vladimir A. Zhukov, И. А. Тихонович, С.С. Медведев, Wolfgang Hoehenwarter, Andrej Frolov
Software Mentions: 3
Published: over 5 years ago

10.1038/onc.2015.399

The NF-κB subunit c-Rel regulates Bach2 tumour suppressor expression in B-cell lymphoma
Cited by: 32
Author(s): Jill E. Hunter, Jacqueline Butterworth, Bo Zhao, Hélène Sellier, Kirsteen J. Campbell, Huw D. Thomas, Chris M. Bacon, Simon Cockell, Benjamin E. Gewurz, Neil D. Perkins
Software Mentions: 3
Published: almost 11 years ago

10.1515/jib-2018-0080

Gene Expression Studies to Identify Significant Genes in AR, MTOR, MAPK Pathways and their Overlapping Regulatory Role in Prostate Cancer
Cited by: 0
Author(s): Nimisha Asati, Abhinav Mishra, Ayush Shukla, Tiratha Raj Singh
Software Mentions: 3
Published: about 7 years ago

10.3758/s13414-018-1490-2

The contribution of forward masking to saccadic inhibition of return
Cited by: 4
Author(s): David Souto, Sabine Born, Dirk Kerzel
Software Mentions: 3
Published: over 8 years ago

10.12688/f1000research.25501.1

MSclassifier: median-supplement model-based classification tool for automated knowledge discovery
Cited by: 0
Author(s): Emmanuel S. Adabor, George Acquaah‐Mensah, Gaston K. Mazandu
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-65847-8

A heritable profile of six miRNAs in autistic patients and mouse models
Cited by: 26
Author(s): Yusuf Özkul, Serpil Taheri, Keziban Korkmaz Bayramov, Elif Funda Şener, Ecmel Mehmetbeyoğlu, Didem Behice Öztop, Fatma Aybuga, Esra Tufan, Ruslan Bayramov, Nazan Dolu, Gökmen Zararsız, Leila Kianmehr, Feyzullah Beyaz, Züleyha Doğanyiğit, François Cuzin, Minoo Rassoulzadegan
Software Mentions: 3
Published: about 6 years ago

10.3390/ijms22136806

Proteomics Analysis of Andrographolide-Induced Apoptosis via the Regulation of Tumor Suppressor p53 Proteolysis in Cervical Cancer-Derived Human Papillomavirus 16-Positive Cell Lines
Cited by: 5
Author(s): Pariyakorn Udomwan, Chamsai Pientong, Panwad Tongchai, Ati Burassakarn, Nuchsupha Sunthamala, Sittiruk Roytrakul, Supawadee Suebsasana, Tipaya Ekalaksananan
Software Mentions: 3
Published: about 5 years ago

10.1093/aobpla/plab002

Geographic patterns of genomic diversity and structure in the C4 grass <i>Panicum hallii</i> across its natural distribution
Cited by: 14
Author(s): Juan Diego Palacio-Mejía, Paul Grabowski, Edgardo M. Ortiz, Gustavo A. Silva‐Arias, Taslima Haque, David L. Des Marais, Jason Bonnette, David B. Lowry, Thomas E. Juenger
Software Mentions: 3
Published: over 5 years ago

10.4172/jpb.1000370

Mining the Breast Cancer Proteome for Predictors of Drug Sensitivity
Cited by: 7
Author(s): Leslie C Timpe Dian Li, Ten Yang Yen Judi Wong
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2407-14-64

Concerted down-regulation of immune-system related genes predicts metastasis in colorectal carcinoma
Cited by: 21
Author(s): Marion Fehlker, Matthew R. Huska, Thomas Jöns, Miguel A. Andrade‐Navarro, Wolfgang Kemmner
Software Mentions: 3
Published: over 12 years ago

10.1186/s12864-015-1646-6

Early life microbial colonization of the gut and intestinal development differ between genetically divergent broiler lines
Cited by: 91
Author(s): Dirkjan Schokker, Gosse Veninga, S.A. Vastenhouw, Alex Bossers, F.M. de Bree, L.M.T.E. Kaal-Lansbergen, Johanna M.J. Rebel, M.A. Smits
Software Mentions: 3
Published: about 11 years ago

10.7717/peerj.4969

Coupling GIS spatial analysis and Ensemble Niche Modelling to investigate climate change-related threats to the Sicilian pond turtle <i>Emys trinacris</i>, an endangered species from the Mediterranean
Cited by: 24
Author(s): Mattia Iannella, Francesco Cerasoli, Paola D’Alessandro, Giulia Console, Maurizio Biondi
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pntd.0009288

Microsatellite based molecular epidemiology of Leishmania infantum from re-emerging foci of visceral leishmaniasis in Armenia and pilot risk assessment by ecological niche modeling
Cited by: 4
Author(s): Katrin Kuhls, Olga Leonidovna Moskalenko, Anna Sukiasyan, Dezdemonia Manukyan, Gayane Melik-Andreasyan, Liana Atshemyan, H. Apresyan, М. В. Стрелкова, Anja Jaeschke, Ralf Wieland, Marcus Frohme, Sofia Cortes, Ara Keshishyan
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-018-2263-6

Alternative empirical Bayes models for adjusting for batch effects in genomic studies
Cited by: 45
Author(s): Yuqing Zhang, D. Graham Jenkins, Solaiappan Manimaran, W. Evan Johnson
Software Mentions: 3
Published: about 8 years ago

10.3390/md17110643

Novel Microcystins from Planktothrix prolifica NIVA-CYA 544 Identified by LC-MS/MS, Functional Group Derivatization and 15N-labeling
Cited by: 14
Author(s): Vittoria Mallia, Silvio Uhlig, Cheryl Rafuse, Juris Meija, Christopher O. Miles
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.7717

Assessing the conservation of Miombo timber species through an integrated index of anthropogenic and climatic threats
Cited by: 3
Author(s): Sílvia Catarino, Maria M. Romeiras, José M. C. Pereira, Rui Figueira
Software Mentions: 3
Published: about 5 years ago

10.3390/insects12070622

Improvement of the Mass-Rearing Protocols for the South American Fruit Fly for Application of the Sterile Insect Technique
Cited by: 3
Author(s): Thiago Mastrangelo, A. Kovaleski, Bruno Aguiar Maset, Maria de Lourdes Zamboni Costa, Clarissa Novaes Valgueiro Barros, Luís Anselmo Lopes, Carlos Cáceres
Software Mentions: 3
Published: about 5 years ago