10.3390/ijms21113940

The Structural Basis of the Binding of Various Aminopolycarboxylates by the Periplasmic EDTA-Binding Protein EppA from Chelativorans sp. BNC1
Cited by: 3
Author(s): K.M. Lewis, C.L. Greene, S.A. Sattler, BuHyun Youn, Luying Xun, ChulHee Kang
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21175977

Lard Injection Matrix for Serial Crystallography
Cited by: 25
Author(s): Ki Hyun Nam
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21197375

Crystal Structure of Non-Structural Protein 10 from Severe Acute Respiratory Syndrome Coronavirus-2
Cited by: 45
Author(s): Annika Rogstam, Maria Nyblom, Steffan Wittrup Christensen, C. Sele, V. Talibov, Therese Lindvall, Anna Andersson Rasmussen, Ingemar André, S.Z. Fisher, Wolfgang Knecht, Frank Kozielski
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes12071045

Evolution and Characterization of Acetyl Coenzyme A: Diacylglycerol Acyltransferase Genes in Cotton Identify the Roles of GhDGAT3D in Oil Biosynthesis and Fatty Acid Composition
Cited by: 10
Author(s): Yanpeng Zhao, Na Wu, Wenjie Li, Jian-Ling Shen, Chen Chen, Fuguang Li, Yuxia Hou
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21207787

High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtii—An Enzyme Involved in the Photosynthetic Calvin-Benson Cycle
Cited by: 3
Author(s): Théo Le Moigne, Pierre Crozet, Stéphane D. Lemaire, Julien Henri
Software Mentions: 1
Published: almost 6 years ago

10.1186/s41021-021-00174-6

Panel of significant risk factors predicts early stage gastric cancer and indication of poor prognostic association with pathogens and microsatellite stability
Cited by: 4
Author(s): Payel Chakraborty, Souvik Ghatak, Saia Chenkual, Lalawmpuii Pachuau, John Zohmingthanga, Zothankima Bawihtlung, Lalfakzuala Khenglawt, Jeremy L. Pautu, Arindam Maitra, Lalchhandama Chhakchhuak, Nachimuthu Senthil Kumar
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21218367

The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms
Cited by: 1
Author(s): Hannes M. Beyer, Salla I. Virtanen, A. Sesilja Aranko, Kornelia M. Mikula, G.T. Lountos, Alexander Wlodawer, O. H. Samuli Ollila, Hideo Iwaï
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21249377

Structural Basis for Design of New Purine-Based Inhibitors Targeting the Hydrophobic Binding Pocket of Hsp90
Cited by: 6
Author(s): Sang Chul Shin, Ashraf K. El-Damasy, Ju Hyeon Lee, Seon Hee Seo, Ji Hyun Kim, Young Ho Seo, Yuri Lee, Yu Ji, Eun Kyoung Bang, Eunice EunKyeong Kim, Gyochang Keum
Software Mentions: 1
Published: over 5 years ago

10.1590/1678-4685-GMB-2017-0109

Characterization and expression of the ABC family (G group) in ‘Dangshansuli’ pear (Pyrus bretschneideri Rehd.) and its russet mutant
Cited by: 8
Author(s): Zhaoqi Hou, Bing Jia, Fĕi Li, Pu Liu, Zhenfeng Ye, Li Zhu, Qi Wang, Wei Heng
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00524-14

Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation
Cited by: 12
Author(s): Morten Simonsen Dueholm, Mads Albertsen, Seth D’Imperio, Vaibhav P. Tale, Derrick L. Lewis, Per Halkjær Nielsen, Jeppe Lund Nielsen
Software Mentions: 1
Published: about 12 years ago

10.3390/ijms22094519

Structural Fluctuations of the Human Proteasome α7 Homo-Tetradecamer Double Ring Imply the Proteasomal α-Ring Assembly Mechanism
Cited by: 1
Author(s): Chihong Song, Tadashi Satoh, Taichiro Sekiguchi, Koichi Kato, Kazuyoshi Murata
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22115831

Structural Basis for the Diminished Ligand Binding and Catalytic Ability of Human Fetal-Specific CYP3A7
Cited by: 7
Author(s): Irina F. Sevrioukova
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22115668

The Importance of N186 in the Alpha-1-Antitrypsin Shutter Region Is Revealed by the Novel Bologna Deficiency Variant
Cited by: 1
Author(s): Riccardo Ronzoni, Ilaria Ferrarotti, Emanuela D’Acunto, Alice Maria Balderacchi, Stefania Ottaviani, David A. Lomas, James A. Irving, Elena Miranda, Annamaria Fra
Software Mentions: 1
Published: about 5 years ago

10.1128/genomeA.00466-15

Draft Genome Sequences of Two Clinical Isolates of Mycobacterium tuberculosis from Sputum of Kazakh Patients
Cited by: 4
Author(s): Ulykbek Kairov, Ulan Kozhamkulov, Askhat Molkenov, Saule Rakhimova, Ayken Askapuli, Maxat Zhabagin, Ainur Akhmetova, Dauren Yerezhepov, Zhannur Abilova, Aliya Abilmazhinova, Venera Bismilda, Л. Т. Чингисова, Zhaxybay Zhumadilov, Ainur Akilzhanova
Software Mentions: 1
Published: about 11 years ago

10.1128/genomeA.00063-17

Draft Genome Sequences of Two Clinical Isolates of Burkholderia mallei Obtained from Nasal Swabs of Glanderous Equines in India
Cited by: 3
Author(s): Harisankar Singha, Praveen Malik, Sheetal Saini, Sandip Kumar Khurana, Mandy C. Elschner, Katja Mertens, Stefanie A. Barth, Bhupendra Nath Tripathi, Raj Kumar Singh
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00197-18

Complete Genome Sequence of the Poly-γ-Glutamate-Synthesizing Bacterium Bacillus subtilis Bs-115
Cited by: 0
Author(s): Fengqing Wang, Lijuan Gong, Lihong Zhou, Jinzhong Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms22157859

Structural Insights for the Stronger Ability of Shrimp Ferritin to Coordinate with Heavy Metal Ions as Compared to Human H-Chain Ferritin
Cited by: 6
Author(s): Yingjie Wang, Jiachen Zang, Chengtao Wang, Xiuqing Zhang, Guanghua Zhao
Software Mentions: 1
Published: about 5 years ago

10.1186/gb-2010-11-8-r89

Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates
Cited by: 66
Author(s): Bernice Sim, Narisara Chantratita, Wen Fong Ooi, Tannistha Nandi, Ryan Tewhey, Vanaporn Wuthiekanun, Janjira Thaipadungpanit, Sarinna Tumapa, Pramila Ariyaratne, Wing-Kin Sung, Xiao Hui Sem, Hui Hoon Chua, R. Kalpana, Chi Ho Lin, Yichun Liu, Edward J. Feil, Mindy B. Glass, Gladys Tan, Sharon J. Peacock, Patrick Tan
Software Mentions: 1
Published: over 16 years ago

10.1186/gb-2011-12-1-r6

Identification of fusion genes in breast cancer by paired-end RNA-sequencing
Cited by: 281
Author(s): Henrik Edgren, Astrid Murumägi, Sara Kangaspeska, Daniel Nicorici, Vesa Hongisto, Kristine Kleivi, Inga Hansine Rye, Sandra Nyberg, Maija Wolf, Anne Lise Børresen-Dale, Olli Kallioniemi
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms22179128

Coordination of Di-Acetylated Histone Ligands by the ATAD2 Bromodomain
Cited by: 9
Author(s): Chiara M. Evans, Margaret Phillips, Kiera L. Malone, Marco Tonelli, Gabriel Cornilescu, Claudia C. Cornilescu, Simon J. Holton, Mátyás Gorjánácz, Liping Wang, Samuel Carlson, Jay C. Nix, Borries Demeler, John L. Markley, Karen C. Glass
Software Mentions: 1
Published: almost 5 years ago

10.1186/gb-2011-12-9-r94

Comparison of solution-based exome capture methods for next generation sequencing
Cited by: 246
Author(s): Anna-Maija Sulonen, Pekka Ellonen, Henrikki Almusa, Maija Lepistö, Samuli Eldfors, Sari Hannula, Timo Miettinen, Henna Tyynismaa, Perttu Salo, Caroline A. Heckman, Heikki Joensuu, Taneli Raivio, Anu Suomalainen, Janna Saarela
Software Mentions: 1
Published: over 15 years ago

10.1186/gb-2012-13-9-r48

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
Cited by: 235
Author(s): Kevin Y. Yip, Chao Cheng, Nitin Bhardwaj, James Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter J. Bickel, M Snyder, Mark Gerstein
Software Mentions: 1
Published: over 14 years ago

10.3390/ijms221910854

Characterization of the Chimeric PriB-SSBc Protein
Cited by: 7
Author(s): En‐Shyh Lin, Yen‐Hua Huang, Cheng-Yang Huang
Software Mentions: 1
Published: almost 5 years ago

10.1186/gb-2013-14-11-r126

Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
Cited by: 81
Author(s): Miriam Ragle Aure, Suvi‐Katri Leivonen, Thomas Fleischer, Qi Zhu, Jens Overgaard, Jan Alsner, Trine Tramm, Riku Louhimo, Grethe I.G. Alnæs, Merja Perälä, Florence Busato, Nizar Touleimat, Jörg Tost, Anne‐Lise Børresen‐Dale, Sampsa Hautaniemi, Olga G. Troyanskaya, Ole Christian Lingjærde, Kristine Kleivi Sahlberg, Vessela N. Kristensen
Software Mentions: 1
Published: over 13 years ago

10.18632/oncotarget.9223

A natural small molecule, catechol, induces c-Myc degradation by directly targeting ERK2 in lung cancer
Cited by: 28
Author(s): Do Young Lim, Seung Ho Shin, Mee-Hyun Lee, Margarita Malakhova, Igor Kurinov, Qiong Wu, Jinglong Xu, Yanan Jiang, Ziming Dong, Kangdong Liu, Kun Yeong Lee, Ki Beom Bae, Bu Young Choi, Yibin Deng, Ann M. Bode, Zigang Dong
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9527

Antivascular and antitumor properties of the tubulin-binding chalcone TUB091
Cited by: 47
Author(s): María Dolores Canela, Sam Noppen, Oskía Bueno, A.E. Prota, Katja Bargsten, Gonzalo Sáez-Calvo, María Luisa Jimeno, Mohammed Benkheil, Doménico Ribatti, Sonsoles Velázquez, María‐José Camarasa, J. Fernando Díaz, Michel O. Steinmetz, Eva-Marı́a Priego, M J Pérez-Pérez, Sandra Liekens
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.14780

The conformational changes of Zika virus methyltransferase upon converting SAM to SAH
Cited by: 23
Author(s): Hailiang Zhou, Fenghua Wang, Haofeng Wang, Cheng Chen, Tianqing Zhang, Xu Han, Deping Wang, Chen Chen, Chunlei Wu, Wei Xie, Zefang Wang, Lei Zhang, Lanfeng Wang, Haitao Yang
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.23223

The structure of the binary methyltransferase-SAH complex from Zika virus reveals a novel conformation for the mechanism of mRNA capping
Cited by: 7
Author(s): Chatrin Chatrin, Sandeep K. Talapatra, Bruno Canard, Frank Kozielski
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.120120

Mechanistic and structural basis for inhibition of thymidylate synthase ThyX
Cited by: 36
Author(s): Tamara Basta, Yap Boum, Julien Briffotaux, Hubert F. Becker, Isabelle Lamarre-Jouenne, Jean‐Christophe Lambry, Stéphane Skouloubris, Ursula Liebl, Marc Graille, Herman van Tilbeurgh, Hannu Myllykallio
Software Mentions: 1
Published: almost 14 years ago

10.1098/rsob.140041

Titin kinase is an inactive pseudokinase scaffold that supports MuRF1 recruitment to the sarcomeric M-line
Cited by: 52
Author(s): Julius Bogomolovas, Alexander Gasch, Felix Šimkovic, Daniel J. Rigden, Siegfried Labeit, Olga Mayans
Software Mentions: 1
Published: over 12 years ago

10.1186/s13059-018-1458-5

A large-scale whole-genome sequencing analysis reveals highly specific genome editing by both Cas9 and Cpf1 (Cas12a) nucleases in rice
Cited by: 200
Author(s): Xu Tang, Guanqing Liu, Jianping Zhou, Qiao Ren, Qi You, Li Tian, Xuhui Xin, Zhiyong Zhong, Binglin Liu, Xuelian Zheng, Dengwei Zhang, Aimee Malzahn, Zhiyun Gong, Yiping Qi, Tao Zhang, Yong Zhang
Software Mentions: 1
Published: about 8 years ago

10.1093/gbe/evu037

Ancient Gene Duplicates in Gossypium (Cotton) Exhibit Near-Complete Expression Divergence
Cited by: 60
Author(s): Simon Renny‐Byfield, Joseph P. Gallagher, Corrinne E. Grover, Emmanuel Szadkowski, Justin T. Page, Joshua A. Udall, Xiyin Wang, Andrew H. Paterson, Jonathan F. Wendel
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jsb.2021.107752

Crystal structure of the anti-CRISPR repressor Aca2
Cited by: 6
Author(s): B. F. Usher, Nils Birkholz, Izaak N Beck, Robert D. Fagerlund, Simon A. Jackson, Peter C. Fineran, Tim R. Blower
Software Mentions: 1
Published: almost 5 years ago

10.1093/gbe/evu201

Genomic Evolution of Saccharomyces cerevisiae under Chinese Rice Wine Fermentation
Cited by: 27
Author(s): Yudong Li, Weiping Zhang, Dao-Qiong Zheng, Zhan Zhou, Wenwen Yu, Lei Zhang, Lei Feng, Xinmiao Liang, Wenjun Guan, Jingwen Zhou, Jian Chen, Zhenguo Lin
Software Mentions: 1
Published: almost 12 years ago

10.1016/j.yjsbx.2021.100044

Structural basis of enzyme activity regulation by the propeptide of l-lysine α-oxidase precursor from Trichoderma viride
Cited by: 2
Author(s): Masaki Kawamura, Norihisa Ito, Yuya Matsumoto, Masaya Saito, Takashi Tamura, Hitoshi Kusakabe, Kenji Inagaki, Katsumi Imada
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evu222

Comparative Genomics Reveals Multiple Genetic Backgrounds of Human Pathogenicity in the Trypanosoma brucei Complex
Cited by: 37
Author(s): Mark Sistrom, Benjamin R. Evans, Robert Bjornson, Wendy Gibson, Oliver Balmer, Pascal Mäser, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: almost 12 years ago

10.1093/gbe/evv092

Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity
Cited by: 76
Author(s): Jana Sperschneider, Donald M. Gardiner, Louise F. Thatcher, Rebecca Lyons, Karam B. Singh, John M. Manners, Jennifer Taylor
Software Mentions: 1
Published: over 11 years ago

10.1016/j.yjsbx.2021.100049

Structural characterization of two solute-binding proteins for N,N′-diacetylchitobiose/N,N′,N′′-triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7
Cited by: 0
Author(s): Takafumi Itoh, Misaki Yaguchi, Akari Nakaichi, Moe Yoda, Takao Hibi, Hisashi Kimoto
Software Mentions: 1
Published: over 5 years ago

10.1016/j.yjsbx.2020.100035

FMN riboswitch aptamer symmetry facilitates conformational switching through mutually exclusive coaxial stacking configurations
Cited by: 13
Author(s): Haley M. Wilt, Ping Yü, Kemin Tan, Yun‐Xing Wang, Jason R. Stagno
Software Mentions: 1
Published: over 6 years ago

10.1093/gbe/evz006

An Annotated Genome for <i>Haliotis rufescens</i> (Red Abalone) and Resequenced Green, Pink, Pinto, Black, and White Abalone Species
Cited by: 32
Author(s): Rick E. Masonbrink, Catherine Purcell, Sara E. Boles, Andrew Whitehead, John R. Hyde, Arun S. Seetharam, Andrew J. Severin
Software Mentions: 1
Published: over 7 years ago

10.1093/gbe/evab177

Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution
Cited by: 10
Author(s): Tim Regan, Lewis Stevens, Carolina Peñaloza, Ross D. Houston, Diego Robledo, Tim P. Bean
Software Mentions: 1
Published: about 5 years ago

10.1107/S1600577516017343

Conformational variation of proteins at room temperature is not dominated by radiation damage
Cited by: 48
Author(s): Silvia Russi, Ana González, L.R. Kenner, D.A. Keedy, James S. Fraser, Henry van den Bedem
Software Mentions: 1
Published: over 9 years ago

10.1107/S1600577520008735

Current status and future opportunities for serial crystallography at MAX IV Laboratory
Cited by: 3
Author(s): Anastasya Shilova, Hugo Lebrette, Oskar Aurelius, Nan Jiang, M. Welin, Rebeka Kovačič, Swagatha Ghosh, Cecilia Safari, Ross J. Friel, Mirko Milas, Zdeněk Matěj, Martin Högbom, Gisela Brändén, Marco Kloos, Robert L. Shoeman, Bruce Doak, Thomas Ursby, Maria Håkansson, D.T. Logan, U. Muêller
Software Mentions: 1
Published: about 6 years ago

10.1107/S0909049513020815

Fundamental studies for the proton polarization technique in neutron protein crystallography
Cited by: 5
Author(s): Ichiro Tanaka, Katsuhiro Kusaka, Toshiyuki Chatake, Nobuo Nakabayashi
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13073-017-0399-z

Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells
Cited by: 21
Author(s): Sjors Middelkamp, Sebastiaan van Heesch, Arie Koen Braat, Joep de Ligt, Maarten van Iterson, Marieke Simonis, Markus J. van Roosmalen, Martijn J. E. Kelder, Evelien Kruisselbrink, Ron Hochstenbach, Nienke E. Verbeek, Elly F. Ippel, Youri Adolfs, R. Jeroen Pasterkamp, Wigard P. Kloosterman, Ewart Kuijk, Edwin Cuppen
Software Mentions: 1
Published: over 9 years ago

10.1107/S1600577515004002

Characterization and use of the spent beam for serial operation of LCLS
Cited by: 17
Author(s): Sébastien Boutet, L. Foucar, Thomas R. M. Barends, Sabine Botha, R. Bruce Doak, Jason E. Koglin, Marc Messerschmidt, Karol Nass, Ilme Schlichting, M. Seibert, Robert L. Shoeman, Garth J. Williams
Software Mentions: 1
Published: over 11 years ago

10.1107/S1600577516016465

P13, the EMBL macromolecular crystallography beamline at the low-emittance PETRA III ring for high- and low-energy phasing with variable beam focusing
Cited by: 141
Author(s): Michele Cianci, Gleb Bourenkov, Guillaume Pompidor, Ivars Karpičs, Johanna Kallio, Isabel Bento, Manfred Roessle, F. Cipriani, S. Fiedler, Thomas R. Schneider
Software Mentions: 1
Published: over 9 years ago

10.1016/j.gpb.2020.05.002

MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals
Cited by: 8
Author(s): Xiaoxu Yang, Chengliang Yang, Xianing Zheng, Luoxing Xiong, Yu‐Tian Tao, Meng Wang, Adam Yongxin Ye, Qixi Wu, Yanmei Dou, Junyu Luo, Liping Wei, August Yue Huang
Software Mentions: 1
Published: over 6 years ago

10.1186/2047-217X-1-14

A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education
Cited by: 41
Author(s): Tarás K. Oleksyk, Jean‐François Pombert, Daniel Siu, Anyi Mazo‐Vargas, Brian P. Ramos, Wilfried Guiblet, Yashira Afanador, Christina Ruiz-Rodriguez, Michael L. Nickerson, David M. Logue, Michael Dean, L. Figueroa, Ricardo Valentin, Juan-Carlos Martinez-Cruzado
Software Mentions: 1
Published: almost 14 years ago

10.1107/S0909049513022760

Crystal structure of the N-terminal domain of MinC dimerized<i>via</i>domain swapping
Cited by: 2
Author(s): Jin Yong An, Tae Kyun Kim, Kyoung Ryoung Park, Jung‐Kyu Lee, Hyung‐Seop Youn, Youngjin Lee, Jung Youn Kang, Gil Bu Kang, Soo Hyun Eom
Software Mentions: 1
Published: almost 13 years ago

10.1107/S0909049513021572

Structural studies of haemoglobin from pisces species shortfin mako shark (<i>Isurus oxyrinchus)</i>at 1.9 Å resolution
Cited by: 5
Author(s): Ramesh Pandian, S. Sundaresan, Pon. Sathya Moorthy, Mahalingam Balasubramanian, M. N. Ponnuswamy
Software Mentions: 1
Published: almost 13 years ago

10.1093/gigascience/giz038

De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing
Cited by: 23
Author(s): Ruby Dhar, Ashikh Seethy, Karthikeyan Pethusamy, Sunil Kumar Singh, Vishwajeet Rohil, Kakali Purkayastha, Indrani Mukherjee, Sandeep Goswami, Rakesh Singh, Ankita Raj, Tryambak Srivastava, Sovon Acharya, Balaji Rajashekhar, Subhradip Karmakar
Software Mentions: 1
Published: over 7 years ago

10.1093/gigascience/giaa020

Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly
Cited by: 3
Author(s): Fanming Meng, Zhuoying Liu, Han Han, Dmitrijs Finkelbergs, Yangshuai Jiang, Mingfei Zhu, Yang Wang, Zongyi Sun, Chao Chen, Yadong Guo, Jifeng Cai
Software Mentions: 1
Published: over 6 years ago

10.1093/gigascience/giaa092

Chromosome-level genome assembly of the female western mosquitofish (Gambusia affinis)
Cited by: 5
Author(s): Feng Shao, Arne Ludwig, Yang Mao, Geoffrey Liu, Zuogang Peng
Software Mentions: 1
Published: about 6 years ago

10.1093/gigascience/giaa099

Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
Cited by: 10
Author(s): Damien Courtine, Jan Provazník, Jérôme Reboul, Guillaume Blanc, Vladimír Beneš, Jonathan J. Ewbank
Software Mentions: 1
Published: almost 6 years ago

10.1128/JVI.00923-19

The 3.1-Angstrom Cryo-electron Microscopy Structure of the Porcine Epidemic Diarrhea Virus Spike Protein in the Prefusion Conformation
Cited by: 53
Author(s): Daniel Wrapp, Jason S. McLellan
Software Mentions: 1
Published: over 6 years ago

10.1128/JVI.02005-19

Structure and Characterization of Crimean-Congo Hemorrhagic Fever Virus GP38
Cited by: 18
Author(s): Akaash K. Mishra, Crystal L. Moyer, Dafna M. Abelson, Daniel J. Deer, Kamel El Omari, Ramona Duman, Leslie Lobel, Julius J. Lutwama, John M. Dye, Armin Wagner, Kartik Chandran, Robert W. Cross, Thomas W. Geisbert, Larry Zeitlin, Zachary A. Bornholdt, Jason S. McLellan
Software Mentions: 1
Published: over 6 years ago

10.1128/JVI.01357-16

Structure of an N276-Dependent HIV-1 Neutralizing Antibody Targeting a Rare V5 Glycan Hole Adjacent to the CD4 Binding Site
Cited by: 24
Author(s): Constantinos Kurt Wibmer, Jason Gorman, Colin Anthony, Nonhlanhla N. Mkhize, Aliaksandr Druz, Talita York, Stephen D. Schmidt, Jan Phillipus Lourens Labuschagne, Mark K. Louder, Robert T. Bailer, Salim Safurdeen. Abdool Karim, John R. Mascola, Carolyn Williamson, Penny L. Moore, Peter D. Kwong, Lynn Morris
Software Mentions: 1
Published: almost 10 years ago

10.1128/JVI.03586-14

Peptide-Dependent Recognition of HLA-B*57:01 by KIR3DS1
Cited by: 64
Author(s): Geraldine M. O’Connor, J.P. Vivian, Emma Gostick, Phillip Pymm, Bernard A. P. Lafont, David A. Price, Jamie Rossjohn, Andrëw G. Brööks, Daniel W. McVicar
Software Mentions: 1
Published: over 11 years ago

10.1186/s13099-014-0040-2

Genome sequencing and genomic characterization of a tigecycline-resistant Klebsiella pneumoniae strain isolated from the bile samples of a cholangiocarcinoma patient
Cited by: 14
Author(s): Beiwen Zheng, Ang Li, Xin Jiang, Xinjun Hu, Jian Yao, Lina Zhao, Jinru Ji, Min Ye, Yonghong Xiao
Software Mentions: 1
Published: almost 12 years ago

10.1155/2017/8940321

A Clinically Relevant Variant of the Human Hydrogen Sulfide-Synthesizing Enzyme Cystathionine<i>β</i>-Synthase: Increased CO Reactivity as a Novel Molecular Mechanism of Pathogenicity?
Cited by: 15
Author(s): João B. Vicente, Henrique G. Colaço, Francesca Malagrinò, Paulo E. Santo, André Gutierres, Tiago M. Bandeiras, Paula Leandro, José A. Brito, Alessandro Giuffrè
Software Mentions: 1
Published: over 9 years ago

10.1186/s13099-017-0156-2

Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea
Cited by: 3
Author(s): Taesoo Kwon, Won Kim, Seung-Hak Cho
Software Mentions: 1
Published: over 9 years ago

10.1186/s13099-017-0216-7

Complete genome sequence of the Vibrio vulnificus strain VV2014DJH, a human-pathogenic bacterium isolated from a death case in China
Cited by: 2
Author(s): Junhang Pan, Yi Sun, Wenwu Yao, Haiyan Mao, Yanjun Zhang, Maoyan Zhu
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13099-019-0298-5

Genomic characterization of Escherichia coli LCT-EC001, an extremely multidrug-resistant strain with an amazing number of resistance genes
Cited by: 7
Author(s): Xuelin Zhang, Saisong Xiao, Xuege Jiang, Yun Li, Fan Zhang, Yi Yu, Peng Wang, Diangeng Li, Xian Zhao, Changting Liu
Software Mentions: 1
Published: over 7 years ago

10.1038/srep43965

Cluster analysis: a new approach for identification of underlying risk factors for coronary artery disease in essential hypertensive patients
Cited by: 46
Author(s): Qi Guo, Xiaoni Lu, Ya Gao, Jingjing Zhang, Bin Yan, Dan Su, Anqi Song, Xi Zhao, Gang Wang
Software Mentions: 1
Published: over 9 years ago

10.1097/HS9.0000000000000031

Molecular Profiling Defines Distinct Prognostic Subgroups in Childhood AML: A Report From the French ELAM02 Study Group
Cited by: 36
Author(s): Alice Marceau-Renaut, Nicolas Duployez, Benoît Ducourneau, Myriam Labopin, Arnaud Petit, Alexandra Rousseau, Sandrine Geffroy, Maria Pia Bucci, Wendy Cuccuini, Odile Fenneteau, Philippe Ruminy, Brigitte Nelken, Stéphane Ducassou, Virginie Gandemer, Thierry Leblanc, Michel Gautier, Yves Bertrand, André Baruchel, Guy Leverger, Claude Preudhomme, Hélène Lapillonne
Software Mentions: 1
Published: over 8 years ago

10.1002/hon.2864

Targeted locus amplification to detect molecular markers in mantle cell and follicular lymphoma
Cited by: 5
Author(s): Elisa Genuardi, Petra Klous, Barbara Mantoan, Daniela Drandi, Martina Ferrante, Federica Cavallo, Beatrice Alessandria, Irene Dogliotti, Daniele Grimaldi, S Ragaini, Michele Clerico, Mariella Lo Schirico, Elona Saraci, Mehmet Yılmaz, Gian Maria Zaccaria, Sergio Cortelazzo, Umberto Vitolo, Stefano Luminari, Massimo Federico, Mario Boccadoro, Max van Min, Erik Splinter, Marco Ladetto, Simone Ferrero
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0140162

Global Habitat Suitability and Ecological Niche Separation in the Phylum Placozoa
Cited by: 10
Author(s): Omid Paknia, Bernd Schierwater
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-018-19169-5

Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms
Cited by: 18
Author(s): Runmao Lin, F. Xiao-Feng Qin, Baoming Shen, Qianqian Shi, Chichuan Liu, Xi Zhang, Yang Jiao, Jun Lü, Yaoyao Gao, Marta Suarez-Fernandez, Federico López-Moya, Luis Vicente López-Llorca, Gang Wang, Zhenchuan Mao, Jian Ling, Youyou Yang, Xinyue Cheng, Bingyan Xie
Software Mentions: 1
Published: over 8 years ago

10.1080/22221751.2019.1663712

Active surveillance and genetic evolution of avian influenza viruses in Egypt, 2016–2018
Cited by: 26
Author(s): Ahmed Kandeil, Joseph T. Hicks, S. Y. Young, Ahmed N. El Taweel, Ahmed S. Kayed, Yassmin Moatasim, Omnia Kutkat, Ola Bagato, Pamela McKenzie, Zhipeng Cai, Rebecca Badra, M. A. Kutkat, Justin Bahl, Richard J. Webby, Ghazi Kayali, Mohamed A. Ali
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-22282-0

High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change
Cited by: 10
Author(s): Laura Casas, Pablo Saenz‐Agudelo, Xabier Irigoien
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-27134-5

Skin Microbiota in Obese Women at Risk for Surgical Site Infection After Cesarean Delivery
Cited by: 20
Author(s): Kara M. Rood, Irina A. Buhimschi, Joseph A. Jurcisek, Taryn Summerfield, Guomao Zhao, William E. Ackerman, Weiwei Wang, R. Wolfgang Rumpf, Stephen Thung, Lauren O. Bakaletz, Catalin S. Buhimschi
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2148-10-236

Introducing the refined gravity hypothesis of extreme sexual size dimorphism
Cited by: 42
Author(s): Guadalupe Corcobado, Miguel A. Rodrı́guez-Gironés, Eva De Mas, Jordi Moya‐Laraño
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-018-27925-w

Application of Whole Genome Resequencing in Mapping of a Tomato Yellow Leaf Curl Virus Resistance Gene
Cited by: 16
Author(s): Yinlei Wang, Jing Jiang, Liping Zhao, Rong Zhou, Wenbao Yu, Tongmin Zhao
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2148-9-280

Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study
Cited by: 205
Author(s): Jerome C. Regier, Andreas Zwick, Michael P. Cummings, Akito Y. Kawahara, Soowon Cho, Susan J. Weller, Amanda D. Roe, Joaquín Baixeras, John W. Brown, Cynthia Parr, Donald R. Davis, Marc E. Epstein, Winifred Hallwachs, Axel Hausmann, Daniel H. Janzen, Ian J. Kitching, M. Alma Solís, Shen Horn Yen, Adam L. Bazinet, Charles Mitter
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-018-32513-z

Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice
Cited by: 23
Author(s): Chao Chai, Rama Shankar, Mukesh Jain, Prasanta K. Subudhi
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-34448-x

Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses
Cited by: 26
Author(s): Nadeem Khan, Chunmei Hu, Waleed Amjad Khan, Wenli Wang, Koeun Han, Hansong Dong, Zhishuo Zhang, Xilin Hou
Software Mentions: 1
Published: almost 8 years ago

10.3897/zookeys.729.20615

Distribution of endangered Italian gudgeon Romanogobio benacensis (Cypriniformes, Cyprinidae, Gobioninae) with remarks on distinguishing morphological characters
Cited by: 3
Author(s): Dušan Jelić, Mišel Jelić, Petar Žutinić, Ivana Šimunović, Primož Zupančić, Alexander M. Naseka
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-35583-1

A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora)
Cited by: 30
Author(s): Changliang Qiu, Zhaofang Han, Wanbo Li, Kun Ye, Yangjie Xie, Zhiyong Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13071-019-3463-2

Shared species of crocodilian trypanosomes carried by tabanid flies in Africa and South America, including the description of a new species from caimans, Trypanosoma kaiowa n. sp.
Cited by: 21
Author(s): Bruno R. Fermino, Fernando Paiva, Laerte B. Viola, Carla Monadeli Filgueira Rodrigues, Herakles A. García, Marta Campaner, Carmen S. A. Takata, Desie Sheferaw, John Joseph M. Kisakye, Agapitus Kato, Carlos Jared, Marta Maria Geraldes Teixeira, Erney P. Camargo
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.2051

The masquerade game: marine mimicry adaptation between egg-cowries and octocorals
Cited by: 10
Author(s): Juan A. Sánchez, Angela P. Fuentes‐Pardo, Íde Ní Almhain, Néstor E. Ardila, Jaime Ricardo Cantera Kintz, Manu Forero-Shelton
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0009950

CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida)
Cited by: 54
Author(s): Judith Pöppe, Patricia Sutcliffe, John N. A. Hooper, Gert Wörheide, Dirk Erpenbeck
Software Mentions: 1
Published: over 16 years ago

10.1038/s41598-018-38450-1

Computational screening of medicinal plant phytochemicals to discover potent pan-serotype inhibitors against dengue virus
Cited by: 90
Author(s): Muhammad Tahir ul Qamar, Arooma Maryam, Iqra Muneer, Xing Feng, Usman Ali Ashfaq, Faheem Ahmed Khan, Farooq Anwar, Mohammed H. Geesi, Rana Rehan Khalid, Sadaf Abdul Rauf, Abdul Rauf Siddiqi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0134328

Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence
Cited by: 20
Author(s): Muhammed Jamsheer K, Chanchal Thomas Mannully, Nandu Gopan, Ashverya Laxmi
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-019-39391-z

Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans
Cited by: 12
Author(s): Elena A. Vidal, Tomás C. Moyano, Bernabé I. Bustos, Eduardo Pérez‐Palma, Carol Moraga, Eleodoro Riveras, Alejandro Montecinos, Lorena Azócar, Daniela C. Soto, Mabel Vidal, Alex Di Génova, Klaus Püschel, Peter Nürnberg, Stephan Buch, Miguel L. Allende, Verónica Cambiazo, Maurício González, Christian Hödar, Martín Montecino, Claudia Muñoz-Espinoza, Ariel Orellana, Angélica Reyes-Jara, Dante Travisany, Paula Vizoso, Mauricio Moraga, S. Eyheramendy, Alejandro Maass, Giancarlo Ferrari, Juan Francisco Miquel, Rodrigo A. Gutiérrez
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-37905-9

Revealing the Hippocampal Connectome through Super-Resolution 1150-Direction Diffusion MRI
Cited by: 70
Author(s): Jerome Joseph Maller, Thomas Welton, Matthew J. Middione, Fraser M. Callaghan, Jeffrey V. Rosenfeld, Stuart M. Grieve
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0031559

Macro and Micro Diversity of Clostridium difficile Isolates from Diverse Sources and Geographical Locations
Cited by: 114
Author(s): Richard A. Stabler, Lisa F. Dawson, Esmeralda Valiente, M. D. Cairns, Melissa J. Martin, Elizabeth H. Donahue, Thomas V. Riley, J. Glenn Songer, Ed J. Kuijper, Kate E. Dingle, Brendan W. Wren
Software Mentions: 1
Published: over 14 years ago

10.1038/s41598-019-41484-8

A fruit firmness QTL identified on linkage group 4 in sweet cherry (Prunus avium L.) is associated with domesticated and bred germplasm
Cited by: 24
Author(s): Lichun Cai, José Quero-García, Teresa Barreneche, Elisabeth Dirlewanger, Christopher Saski, Amy Iezzoni
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0099074

DUF581 Is Plant Specific FCS-Like Zinc Finger Involved in Protein-Protein Interaction
Cited by: 29
Author(s): Muhammed Jamsheer K, Ashverya Laxmi
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-019-42428-y

The development of a high-density genetic map significantly improves the quality of reference genome assemblies for rose
Cited by: 14
Author(s): Shubin Li, Guoqian Yang, Shuhua Yang, Jérémy Just, Huijun Yan, Ningning Zhou, Hongying Jian, Qigang Wang, Min Chen, Xianqin Qiu, Hao Zhang, Xue Dong, Xiaoling Jiang, Yibo Sun, Mingyu Zhong, Mohammed Bendahmane, Guogui Ning, Hong Ge, Jin‐Yong Hu, Kaixue Tang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0016580

Exploring the Evolutionary Relationship of Insulin Receptor Substrate Family Using Computational Biology
Cited by: 27
Author(s): Chiranjib Chakraborty, Govindasamy Agoramoorthy, Minna J. Hsu
Software Mentions: 1
Published: over 15 years ago

10.1038/s41598-019-44856-2

QTL-seq identifies cooked grain elongation QTLs near soluble starch synthase and starch branching enzymes in rice (Oryza sativa L.)
Cited by: 39
Author(s): Siwaret Arikit, Samart Wanchana, Srisawat Khanthong, Chatree Saensuk, Tripop Thianthavon, Apichart Vanavichit, Theerayut Toojinda
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0024820

Characterization of Leishmania donovani Aquaporins Shows Presence of Subcellular Aquaporins Similar to Tonoplast Intrinsic Proteins of Plants
Cited by: 16
Author(s): Neha Biyani, Suvra Mandal, Chandan Seth, Malika Saint, Krishnamurthy Natarajan, Indira Ghosh, Rentala Madhubala
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0103800

A Brazilian Population of the Asexual Fungus-Growing Ant Mycocepurus smithii (Formicidae, Myrmicinae, Attini) Cultivates Fungal Symbionts with Gongylidia-Like Structures
Cited by: 17
Author(s): Virginia E. Masiulionis, Christian Rabeling, Henrik H. De Fine Licht, Ted R. Schultz, Maurício Bacci, Cintia Maria Santos Bezerra, Fernando Carlos Pagnocca
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-019-45454-y

Genome-wide analysis of genetic variations between dominant and recessive NILs of glanded and glandless cottons
Cited by: 5
Author(s): Tianlun Zhao, Cheng Li, Cong Liu, Fan Zhang, Lei Mei, Elmon Chindudzi, Jinhong Chen, Shuijin Zhu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-45511-6

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater
Cited by: 21
Author(s): Tian Wu, Linzhou Li, Xiaoying Jiang, Yong Yang, Yanzi Song, Liang Chen, Xun Xu, Yue Shen, Ying Gu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-48239-5

Construction of a high density linkage map and genome dissection of bruchid resistance in zombi pea (Vigna vexillata (L.) A. Rich)
Cited by: 9
Author(s): Kitiya Amkul, Lixia Wang, Prakit Somta, Suhua Wang, Xuzhen Cheng
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-48492-8

Application of a high-resolution genetic map for chromosome-scale genome assembly and fine QTLs mapping of seed size and weight traits in castor bean
Cited by: 14
Author(s): Anmin Yu, Fĕi Li, Wei Xu, Zaiqing Wang, Chao Sun, Bing Han, Yue Wang, Bo Wang, Xuejiao Cheng, Aizhong Liu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0220477

Living on the edge: Assessing the diversity of South African Pocillopora on the margins of the Southwestern Indian Ocean
Cited by: 4
Author(s): Brent Chiazzari, Hélène Magalon, Pauline Gélin, Angus H. H. Macdonald
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2021.579920

Antagonistic Activity of Trichoderma spp. Against Fusarium oxysporum in Rhizosphere of Radix pseudostellariae Triggers the Expression of Host Defense Genes and Improves Its Growth Under Long-Term Monoculture System
Cited by: 21
Author(s): Jun Chen, Liuting Zhou, Israr Ud Din, Yasir Arafat, Qian Li, Juanying Wang, Tingting Wu, Linkun Wu, Hongmiao Wu, Xianjin Qin, Ganga Raj Pokhrel, Shan Lin, Wenxiong Lin
Software Mentions: 1
Published: over 5 years ago