10.1186/s12870-021-03051-0

Study on the differences of gene expression between pear and apple wild cultivation materials based on RNA-seq technique
Cited by: 3
Author(s): Huangwei Zhang, Meng Li, Min Jung Kong, Jim M. Dunwell, Yuyan Zhang, Chao Yue, Juyou Wu, Shaoling Zhang
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0109025

Sexual Ornaments, Body Morphology, and Swimming Performance in Naturally Hybridizing Swordtails (Teleostei: Xiphophorus)
Cited by: 11
Author(s): James B. Johnson, Danielle Carter de Macedo, Courtney N. Passow, Gil G. Rosenthal
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0205667

Genetic structure and chemical diversity in natural populations of Uncaria guianensis (Aubl.) J.F.Gmel. (Rubiaceae)
Cited by: 3
Author(s): Isabela Cristina Gomes Honório, Juliana S. Coppede, Piero G. Delprete, Frederico Henrique Silva Costa, Mariana P. C. Telles, Ramilla S. Braga, José Alexandre Felizola Diniz‐Filho, Valéria S. C. Correa, Suzelei C. França, Ana Maria Soares Pereira, Bianca Waléria Bertoni
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pgen.1008675

Tryptamine accumulation caused by deletion of MrMao-1 in Metarhizium genome significantly enhances insecticidal virulence
Cited by: 19
Author(s): Xiaowei Tong, Yundan Wang, Pengcheng Yang, Chengshu Wang, Le Kang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0242584

Correction: The challenge of monitoring elusive large carnivores: An accurate and cost-effective tool to identify and sex pumas (Puma concolor) from footprints
Cited by: 1
Author(s): Sky K. Alibhai, Zoë C. Jewell, Jeffrey S. Evans
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0147147

Systematic Identification and Characterization of Long Non-Coding RNAs in the Silkworm, Bombyx mori
Cited by: 94
Author(s): Yuqian Wu, Tingcai Cheng, Chun Li, Duolian Liu, Quan Zhang, Rodney Long, Ping Zhao, Qingyou Xia
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0094187

ZBED6 Modulates the Transcription of Myogenic Genes in Mouse Myoblast Cells
Cited by: 19
Author(s): Lin Jiang, Ola Wallerman, Shady Younis, Carl-Johan Rubin, Elizabeth R. Gilbert, Elisabeth Sundström, Awaisa Ghazal, Xiaolan Zhang, Li Wang, Tarjei S. Mikkelsen, Gerhard Andersson, Leif Andersson
Software Mentions: 3
Published: over 12 years ago

10.3389/fpsyg.2017.00916

Model Evaluation in Generalized Structured Component Analysis Using Confirmatory Tetrad Analysis
Cited by: 6
Author(s): Ji Hoon Ryoo, Heungsun Hwang
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0187966

RNA-seq reveals transcriptome changes in goats following myostatin gene knockout
Cited by: 24
Author(s): Lamei Wang, Bei Cai, Shiwei Zhou, Haijing Zhu, Qu Liu, Xiaolong Wang
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0210650

LncRNA expression profile and ceRNA analysis in tomato during flowering
Cited by: 24
Author(s): Zhenchao Yang, Chengcheng Yang, Zhengyan Wang, Yang Zhao, Danyan Chen, Yongjun Wu
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0209061

Exploring differentially expressed key genes related to development of follicle by RNA-seq in Peking ducks (Anas Platyrhynchos)
Cited by: 14
Author(s): Jinjun Ren, Changsen Sun, Li Chen, Jianhong Hu, Xuetao Huang, Xiaolin Liu, Lizhi Liu
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0173974

Genome-wide analysis of brain and gonad transcripts reveals changes of key sex reversal-related genes expression and signaling pathways in three stages of Monopterus albus
Cited by: 35
Author(s): Wei Chi, Yu Gao, Qing Hu, Wei Guo, Dapeng Li
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0218938

Genome-wide comparative analysis of RNA-binding Glycine-rich protein family genes between Gossypium arboreum and Gossypium raimondii
Cited by: 11
Author(s): Yang Wei, Min Yu, Changsong Zou, Changming Lu, Daoqian Yu, Hongyan Cheng, Pengfei Jiang, Feng Xu, Youping Zhang, Qiaolian Wang, Hong Zhang, Guoli Song, Zhuqing Zhou
Software Mentions: 3
Published: about 7 years ago

10.1002/ajpa.22280

The convergent evolution of blue iris pigmentation in primates took distinct molecular paths
Cited by: 14
Author(s): Wynn K. Meyer, Sidi Zhang, Shinya Hayakawa, Hiroo Imai, Molly Przeworski
Software Mentions: 3
Published: over 13 years ago

10.1098/rstb.2016.0302

The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia
Cited by: 70
Author(s): Sebastian Funk, Iza Ciglenečki, Amanda Tiffany, Etienne Gignoux, Anton Camacho, Rosalind M Eggo, Kucharski Aj, Edmunds Wj, Josephus Bolongei, Phillip Azuma, Peter Clement, Alpha Ts, Esther Sterk, Barbara Telfer, Gregory Engel, Lucy Anne Parker, Motoi Suzuki, Nico Heijenberg, Bruce Reeder
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0154882

An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants
Cited by: 18
Author(s): Li Zhang, Shibo Wang, Qi-Gang Li, Jian Song, Yuqi Hao, Ling Zhou, Huanquan Zheng, J. M. Dunwell, Yuanming Zhang
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pcbi.1009058

A network modelling approach to assess non-pharmaceutical disease controls in a worker population: An application to SARS-CoV-2
Cited by: 9
Author(s): Edward M. Hill, Benjamin D. Atkins, Matthew James Keeling, Louise Dyson, Michael J. Tildesley
Software Mentions: 3
Published: about 5 years ago

10.1186/s13578-019-0308-9

Zika virus antagonizes interferon response in patients and disrupts RIG-I–MAVS interaction through its CARD-TM domains
Cited by: 34
Author(s): Yiwen Hu, Xinhuai Dong, Zhenjian He, Yun Wu, Shihao Zhang, Jiajie Lin, Yi Yang, Jiahui Chen, Shu An, Yingxian Yin, Zhiyong Shen, Gucheng Zeng, Han Tian, Junchao Cai, Hongyu Guan, Jueheng Wu, Mengfeng Li, Xun Zhu
Software Mentions: 3
Published: about 7 years ago

10.1038/s41419-020-2333-3

UHRF1-repressed 5’-hydroxymethylcytosine is essential for the male meiotic prophase I
Cited by: 9
Author(s): Hongjie Pan, Ning Jiang, Shenfei Sun, Hanwei Jiang, Jianze Xu, Xiaohua Jiang, Qian Gao, Liang Li, Haili Wu, Huajun Zheng, Qi Qi, Tianqi Li, Meixing Zhang, Lingling Zhang, Xiaofeng Wan, Xinhua Lin, Jiemin Wong, Qinghua Shi, Li R
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.6393

Oceanic thermal structure mediates dive sequences in a foraging seabird
Cited by: 12
Author(s): Xavier Meyer, Andrew J. J. MacIntosh, André Chiaradia, Akiko Kato, Francisco Ramírez, Cédric Sueur, Yan Ropert‐Coudert
Software Mentions: 3
Published: about 6 years ago

10.1038/s41421-021-00302-0

Potent prophylactic and therapeutic efficacy of recombinant human ACE2-Fc against SARS-CoV-2 infection in vivo
Cited by: 43
Author(s): Zhaoyong Zhang, Eric Zeng, Lu Zhang, Weiming Wang, Yingkang Jin, Jun Sun, Shuxiang Huang, Wenguang Yin, Jun Dai, Zhen Zhuang, Chen Zhao, Jing Sun, Airu Zhu, Fang Li, Weitao Cao, Xiaobo Li, Yongxia Shi, Mian Gan, Shengnan Zhang, Peilan Wei, Jicheng Huang, Nanshan Zhong, Guocai Zhong, Jingxian Zhao, Yanqun Wang, Wei Shao, Jincun Zhao
Software Mentions: 3
Published: about 5 years ago

10.1002/evl3.8

Direct estimation of the spontaneous mutation rate by short-term mutation accumulation lines in <i>Chironomus riparius</i>
Cited by: 54
Author(s): Ann-Marie Oppold, Markus Pfenninger
Software Mentions: 3
Published: about 9 years ago

10.1155/2021/3524571

RNA-Seq Expression Analysis of Chronic Asthmatic Mice with Bu-Shen-Yi-Qi Formula Treatment and Prediction of Regulated Gene Targets of Anti-Airway Remodeling
Cited by: 3
Author(s): Jie Cui, Zexi Lv, Fangzhou Teng, Yi Liu, Weifeng Tang, WenQian Wang, Tulake Wuniqiemu, Jingjing Qin, Xueyi Zhu, Ying Wei, Jingcheng Dong
Software Mentions: 3
Published: over 5 years ago

10.3390/insects12050462

Monitoring Exotic Beetles with Inexpensive Attractants: A Case Study
Cited by: 10
Author(s): Enrico Ruzzier, Andrea Galli, Luciano Bani
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.ppat.1009838

Probing the spatiotemporal patterns of HBV multiplication reveals novel features of its subcellular processes
Cited by: 10
Author(s): Lei Yue, Chang Li, Mingzhu Xu, Min Wu, Jiahui Ding, Jiangxia Liu, Xiaonan Zhang, Zhenghong Yuan
Software Mentions: 3
Published: about 5 years ago

10.3389/fgene.2021.655900

Genome-Wide DNA Methylation and Transcriptome Analyses Reveal Epigenetic and Genetic Mechanisms Underlying Sex Maintenance of Adult Chinese Alligator
Cited by: 4
Author(s): Jianqing Lin, Jun Yu, Li Sun, Sheng‐Guo Fang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2020.00321

Identification and Integrated Analysis of MicroRNA and mRNA Expression Profiles During Agonistic Behavior in Chinese Mitten Crab (Eriocheir sinensis) Using a Deep Sequencing Approach
Cited by: 4
Author(s): Yangyang Pang, Long He, Yameng Song, Xiaozhe Song, Jiahuan Lv, Yongxu Cheng, Xiaozhen Yang
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2018.00340

Integrative Analyses of Transcriptome Sequencing Identify Functional miRNAs in the Chicken Embryo Fibroblasts Cells Infected With Reticuloendotheliosis Virus
Cited by: 6
Author(s): Jie Zhai, Chang Gao, Lisheng Fu, Long Jiang, Shengyuan Dang, Shangen Zheng
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2021.654146

MicroRNAs Involved in Regulatory Cytoplasmic Male Sterility by Analysis RNA-seq and Small RNA-seq in Soybean
Cited by: 3
Author(s): Chunbao Zhang, Fuyou Fu, Chunjing Lin, Xiaoyang Ding, Jingyong Zhang, Hao Yan, Pengnian Wang, Wei Zhang, Bao Peng, Limei Zhao
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.693574

Integrated Analysis of microRNA and mRNA Transcriptome Reveals the Molecular Mechanism of Solanum lycopersicum Response to Bemisia tabaci and Tomato chlorosis virus
Cited by: 3
Author(s): Ya Hao, Liping Huang, Ding-Yi-Hui Lu, Zhanhong Zhang, Zhuo Zhang, Deyong Zhang, Limin Zheng, Yang Gao, Xinqiu Tan, Xuguo Zhou, Xiaolu Shi, Yong Liu
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2017.00716

Effects of Inhibitors on the Transcriptional Profiling of Gluconobater oxydans NL71 Genes after Biooxidation of Xylose into Xylonate
Cited by: 16
Author(s): Yuanyuan Miao, Yi Shen, Yong Xu
Software Mentions: 3
Published: over 9 years ago

10.1186/s12711-020-00534-w

Genotype calling of triploid offspring from diploid parents
Cited by: 5
Author(s): Kim Erik Grashei, Jørgen Ødegård, T.H.E. Meuwissen
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.621462

Gene Expression Profile of the Human Colorectal Carcinoma LoVo Cells Treated With Sporamin and Thapsigargin
Cited by: 3
Author(s): Chun Yang, Si-Jia Chen, Bowen Chen, Kai-Wen Zhang, Jingjie Zhang, Rong Xiao, Peng-Gao Li
Software Mentions: 3
Published: about 5 years ago

10.1038/srep27357

Identification of differentially expressed genes from multipotent epithelia at the onset of an asexual development
Cited by: 16
Author(s): Lorenzo Ricci, Ankita Chaurasia, Pascal Lapébie, Philippe Dru, Rebecca R. Helm, Richard R. Copley, Stefano Tiozzo
Software Mentions: 3
Published: about 10 years ago

10.1093/cercor/bhz218

Learning in Visual Regions as Support for the Bias in Future Value-Driven Choice
Cited by: 5
Author(s): Sara Jahfari, Jan Theeuwes, Tomas Knapen
Software Mentions: 3
Published: almost 7 years ago

10.3389/fbioe.2020.00249

Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic Microenvironments
Cited by: 20
Author(s): Jessica Yu, Neda Bagheri
Software Mentions: 3
Published: about 6 years ago

10.1186/s13287-021-02585-2

In vitro genome editing rescues parkinsonism phenotypes in induced pluripotent stem cells-derived dopaminergic neurons carrying LRRK2 p.G2019S mutation
Cited by: 14
Author(s): Kuo‐Hsuan Chang, Cheng‐Yen Huang, Chih-Hsin Ou-Yang, Chang-Han Ho, Hon‐Yi Lin, Chih‐Cheng Hsu, You-Tzung Chen, Yu‐Chi Chou, Yijing Chen, Ying Chen, Jiali Lin, Ji-Kuan Wang, Pei‐Wen Lin, Ying-Ru Lin, Miao-Hsia Lin, C. K. Tseng, Chin-Hsien Lin
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnins.2021.625816

The Protective Effects of Perceived Control During Repeated Exposure to Aversive Stimuli
Cited by: 7
Author(s): Kainan S. Wang, Mauricio R. Delgado
Software Mentions: 3
Published: over 5 years ago

10.1155/2017/8027626

Transcriptome Analysis of Two Different Developmental Stages of <i>Paeonia lactiflora</i> Seeds
Cited by: 7
Author(s): Yong-Lei Ma, Jinqiu Cui, Xiujun Lu, Lijie Zhang, Zhijing Chen, Riwen Fei, Xiulan Sun
Software Mentions: 3
Published: over 9 years ago

10.1155/2019/7106092

A Transcriptomic Analysis Reveals Diverse Regulatory Networks That Respond to Cold Stress in Strawberry (<i>Fragaria</i>×<i>ananassa</i>)
Cited by: 18
Author(s): Yong Zhang, Yunting Zhang, Yuanxiu Lin, Yunbo Luo, Xiaorong Wang, Bo Sun, Yan Wang, Mengyao Li, Haoru Tang
Software Mentions: 3
Published: about 7 years ago

10.7554/eLife.42426

TRIM28 promotes HIV-1 latency by SUMOylating CDK9 and inhibiting P-TEFb
Cited by: 61
Author(s): Xiancai Ma, Tao Yang, Yong Luo, Liyang Wu, Yawen Jiang, Sifa Zheng, Ting Pan, Bingfeng Liu, Guangyan Liu, Jun Li, Fei Yu, Zhangping He, Wanying Zhang, Jinyu Yang, Liting Liang, Yuanjun Guan, Xu Zhang, Linghua Li, Weiping Cai, Xiaoping Tang, Song Gao, Kai Deng, Hui Zhang
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms16023493

Transcriptome Profiling and Identification of Transcription Factors in Ramie (Boehmeria nivea L. Gaud) in Response to PEG Treatment, Using Illumina Paired-End Sequencing Technology
Cited by: 38
Author(s): Xiaopeng An, Jie Chen, Jingyu Zhang, Yu-Cai Liao, Lunjin Dai, Bo Wang, Lijun Liu, Dingxiang Peng
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pbio.3000046

Fine-tuned adaptation of embryo–endometrium pairs at implantation revealed by transcriptome analyses in Bos taurus
Cited by: 14
Author(s): Fernando H. Biase, Isabelle Hue, Sarah Dickinson, Florence Jaffrézic, Dénis Laloë, Harris A. Lewin, Olivier Sandra
Software Mentions: 3
Published: over 7 years ago

10.3389/fgene.2020.00542

Identification of Four Potential Biomarkers Associated With Coronary Artery Disease in Non-diabetic Patients by Gene Co-expression Network Analysis
Cited by: 12
Author(s): Min Jiao, Jingtian Li, Quan Zhang, Xiufeng Xu, Ruidong Li, Peikang Dong, Chun Meng, Yang Li, Lijuan Wang, Wanpeng Qi, Kang Kai, Hongjie Wang, Tao Wang
Software Mentions: 3
Published: about 6 years ago

10.3389/fphys.2020.612036

Impact of Ringer’s Solution Challenge Stress to Immunostimulatory Experiment, Insights From Japanese Flounder
Cited by: 1
Author(s): Jinxiang Liu, Zan Li, Yujue Wang, Quanqi Zhang
Software Mentions: 3
Published: over 5 years ago

10.1007/s00401-020-02247-2

Clear cell meningiomas are defined by a highly distinct DNA methylation profile and mutations in SMARCE1
Cited by: 27
Author(s): Philipp Sievers, Martin Sill, Christina Blume, Arnault Tauziède‐Espariat, Daniel Schrimpf, Damian Stichel, David Reuß, Helin Dogan, Christian Hartmann, Christian Mawrin, Martin Hasselblatt, Walter Stummer, Uta Schick, Jürgen Hench, Stephan Frank, Ralf Ketter, Leonille Schweizer, Jens Schittenhelm, Stéphanie Puget, Sebastian Brandner, Zane Jaunmuktane, Benno Küsters, Zied Abdullaev, Melike Pekmezci, Matija Snuderl, Miriam Ratliff, Christel Herold‐Mende, Andreas Unterberg, Kenneth Aldape, David W. Ellison, Pieter Wesseling, Guido Reifenberger, Wolfgang Wick, Arie Perry, Pascale Varlet, Stefan M. Pfister, David Jones, Andreas von Deimling, Felix Sahm
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-50148-6

Gene co-expression network analysis reveals key potential gene modules in utero-vaginal junction associated with duration of fertility trait of breeder hens
Cited by: 1
Author(s): Lantao Gu, Ruoxi Jing, Yanzhang Gong, Mei Yu, Abdelmotaleb A. Elokil, Shijun Li
Software Mentions: 3
Published: almost 7 years ago

10.3390/ijms21030861

Comparative Transcriptome Analysis of Different Dendrobium Species Reveals Active Ingredients-Related Genes and Pathways
Cited by: 21
Author(s): Yingdan Yuan, Bo Zhang, Xinggang Tang, Jinchi Zhang, Jie Lin
Software Mentions: 3
Published: over 6 years ago

10.1186/s40478-019-0665-y

Comprehensive gene expression meta-analysis identifies signature genes that distinguish microglia from peripheral monocytes/macrophages in health and glioma
Cited by: 109
Author(s): Verena Haage, Marcus Semtner, Ramón Vidal, Daniel Hernández, Winnie W. Pong, Zhihong Chen, Dolores Hambardzumyan, Vincent Magrini, Amy Ly, Jason Walker, Elaine R. Mardis, Philipp Mertins, Sascha Sauer, Helmut Kettenmann, David H. Gutmann
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2105-10-288

Exploratory and inferential analysis of gene cluster neighborhood graphs
Cited by: 4
Author(s): Theresa Scharl, Ingo Voglhuber, Friedrich Leisch
Software Mentions: 3
Published: almost 17 years ago

10.1186/s40478-018-0636-8

Forced turnover of aged microglia induces an intermediate phenotype but does not rebalance CNS environmental cues driving priming to immune challenge
Cited by: 91
Author(s): Shane O'Neil, Kristina G. Witcher, Daniel B. McKim, Jonathan P. Godbout
Software Mentions: 3
Published: over 7 years ago

10.3390/ijerph18179269

The Associations between Knowledge and Behaviours Related to Touch Screens and Microbiological Threats among IT Students’
Cited by: 4
Author(s): Dorota Oszutowska–Mazurek, Jarosław Fastowicz, P. Mazurek
Software Mentions: 3
Published: almost 5 years ago

10.1002/advs.202001018

KEAP1 Mutations Drive Tumorigenesis by Suppressing SOX9 Ubiquitination and Degradation
Cited by: 7
Author(s): Na Shao, Hong Huang, Muhammad Idris, Peng Xu, Feng Xu, Shiwu Dong, Chungang Liu
Software Mentions: 3
Published: almost 6 years ago

10.1016/j.mex.2019.09.013

Low-cost automatic temperature monitoring system with alerts for laboratory rearing units
Cited by: 3
Author(s): François Rebaudo, Romain Benoist
Software Mentions: 3
Published: over 7 years ago

10.1186/s12874-016-0142-2

Utilizing distributional analytics and electronic records to assess timeliness of inpatient blood glucose monitoring in non-critical care wards
Cited by: 3
Author(s): Ying Chen, Shih Ling Kao, E. Shyong Tai, Hwee Lin Wee, Eric Yin Hao Khoo, Yilin Ning, Mark Kevin Salloway, Xiaodong Deng, Chuen Seng Tan
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0253515

Risk of adverse events in gastrointestinal endoscopy: Zero-inflated Poisson regression mixture model for count data and multinomial logit model for the type of event
Cited by: 7
Author(s): Marco Gemma, Fulvia Pennoni, Roberta Tritto, Massimo Aglietta
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-019-39108-2

Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings
Cited by: 54
Author(s): Kyu-Baek Hwang, In‐Hee Lee, Honglan Li, Dhong-Geon Won, Carles Hernandez‐Ferrer, Jose A. Negron, Sek Won Kong
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2018.01335

Effect of Soil pH on the Growth, Reproductive Investment and Pollen Allergenicity of Ambrosia artemisiifolia L.
Cited by: 102
Author(s): Rodolfo Gentili, Roberto Ambrosini, Chiara Montagnani, Sandra Citterio
Software Mentions: 3
Published: almost 8 years ago

10.1002/advs.202100962

Wireless Localized Electrical Stimulation Generated by an Ultrasound‐Driven Piezoelectric Discharge Regulates Proinflammatory Macrophage Polarization
Cited by: 37
Author(s): Ying Kong, Feng Liu, Baojin Ma, Jiazhi Duan, Wenhu Yuan, Yuanhua Sang, Lin Han, Shuhua Wang, Hong Liu
Software Mentions: 3
Published: over 5 years ago

10.1002/advs.202002135

Engineered Plant‐Based Nanocellulose Hydrogel for Small Intestinal Organoid Growth
Cited by: 31
Author(s): Rodrigo Curvello, Genevieve Kerr, Diana Micati, Wing Man Chan, Vikram Singh Raghuwanshi, Joseph Rosenbluh, Helen E. Abud, Gil Garnier
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.102196

Comprehensive transcriptomic analysis indicates brain regional specific alterations in type 2 diabetes
Cited by: 3
Author(s): Zhe Zhou, Yizhang Zhu, Yang Liu, Yuxin Yin
Software Mentions: 3
Published: almost 7 years ago

10.1186/s13690-021-00559-7

Socioeconomic status, well-being and mortality: a comprehensive life course analysis of panel data, Germany, 1984-2016
Cited by: 13
Author(s): Diego Montaño
Software Mentions: 3
Published: over 5 years ago

10.18632/aging.101485

Regulatory RNA binding proteins contribute to the transcriptome-wide splicing alterations in human cellular senescence
Cited by: 13
Author(s): Qiongye Dong, Lei Wei, Michael Q. Zhang, Xiaowo Wang
Software Mentions: 3
Published: about 8 years ago

10.18632/aging.103704

Prognostic value and underlying mechanism of KIAA0101 in hepatocellular carcinoma: database mining and co-expression analysis
Cited by: 4
Author(s): Weiyu Xu, Xuezhu Wang, Xiaoqian Wu, Si Yu, Jianping Xiong, Xinting Sang, Yongchang Zheng, Zhongtao Zhang
Software Mentions: 3
Published: almost 6 years ago

10.3390/ani9070403

Characterization of Circular RNAs in Chinese Buffalo (Bubalus bubalis) Adipose Tissue: A Focus on Circular RNAs Involved in Fat Deposition
Cited by: 23
Author(s): Jieping Huang, Zhao Jian-Gao, Qiuzhi Zheng, Shuzhe Wang, Xuefeng Wei, Fen Li, Jin Shang, Chuzhao Lei, Yun Ma
Software Mentions: 3
Published: about 7 years ago

10.1186/1471-2164-15-1070

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis
Cited by: 93
Author(s): Teija Ojala, Matti Kankainen, Joana Castro, Nuno Cerca, Sanna Edelman, Benita Westerlund-Wikström, Lars Paulín, Liisa Holm, Petri Auvinen
Software Mentions: 3
Published: over 12 years ago

10.7717/peerj-cs.612

Rapid global path planning algorithm for unmanned surface vehicles in large-scale and multi-island marine environments
Cited by: 7
Author(s): Dong Wang, Jie Zhang, Jiucai Jin, Deqing Liu, Xingpeng Mao
Software Mentions: 3
Published: about 5 years ago

10.1128/AAC.00554-20

Candida glabrata Transcription Factor Rpn4 Mediates Fluconazole Resistance through Regulation of Ergosterol Biosynthesis and Plasma Membrane Permeability
Cited by: 18
Author(s): Pedro Pais, Raquel Califórnia, Mónica Galocha, Romeu Viana, Mihaela Ola, Mafalda Cavalheiro, Azusa Takahashi‐Nakaguchi, Hiroji Chibana, Geraldine Butler, Miguel C. Teixeira
Software Mentions: 3
Published: almost 6 years ago

10.1038/srep32584

Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls
Cited by: 17
Author(s): Carolin Knecht, Christoph Fretter, Philip Rosenstiel, Michael Krawczak, Marc‐Thorsten Hütt
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-018-28007-7

Enumerating all possible biosynthetic pathways in metabolic networks
Cited by: 24
Author(s): Aarthi Ravikrishnan, Meghana Nasre, Karthik Raman
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-019-54569-1

Frequency Modulated Möbius Model Accurately Predicts Rhythmic Signals in Biological and Physical Sciences
Cited by: 19
Author(s): Cristina Rueda, Yolanda Larriba, Shyamal Peddada
Software Mentions: 3
Published: over 6 years ago

10.3390/antiox9090884

The Transcriptomic Response of the Murine Thyroid Gland to Iodide Overload and the Role of the Nrf2 Antioxidant System
Cited by: 7
Author(s): Dionysios V. Chartoumpekis, Panos G. Ziros, Ilias Georgakopoulos-Soares, Alexander Smith, Ana C. Marques, Mark Ibberson, Peter Kopp, Ioannis Habeos, Ioannis P. Trougakos, Nicholas K.H. Khoo, Gerasimos P. Sykiotis
Software Mentions: 3
Published: almost 6 years ago

10.1007/s10482-018-1040-x

Deciphering the trophic interaction between Akkermansia muciniphila and the butyrogenic gut commensal Anaerostipes caccae using a metatranscriptomic approach
Cited by: 83
Author(s): Loo Wee Chia, Bastian Hornung, Steven Aalvink, Peter J. Schaap, Willem M. de Vos, Jan Knol, Clara Belzer
Software Mentions: 3
Published: over 8 years ago

10.1007/s00253-017-8714-6

Halotolerant microbial consortia able to degrade highly recalcitrant plant biomass substrate
Cited by: 39
Author(s): Larisa Cortés-Tolalpa, Justin Norder, Jan Dirk van Elsas, Joana Falcão Salles
Software Mentions: 3
Published: over 8 years ago

10.3390/ani11030801

Cryptosporidium spp. and Giardia spp. in Free-Ranging Introduced Monk Parakeets from Santiago, Chile
Cited by: 5
Author(s): Alejandra Sandoval-Rodríguez, Daniela Marcone, Raúl Alegría-Morán, Matilde Larraechea, Karina Yévenes, Fernando Fredes, Cristóbal Briceño
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-07944-0

Altered synthesis of genes associated with short-chain fatty acids in the gut of patients with atrial fibrillation
Cited by: 18
Author(s): Jing Zhang, Kun Zuo, Fang Chen, Xiandong Yin, Xiaoqing Liu, Jiu-Chang Zhong, Kuibao Li, Jing Li, Lisha Xu, Xinchun Yang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13075-018-1688-7

T-cell transcriptomics from peripheral blood highlights differences between polymyositis and dermatomyositis patients
Cited by: 19
Author(s): Miranda Houtman, Louise Ekholm, Espen Hesselberg, Karine Chemin, Vivianne Malmström, Ann M. Reed, Ingrid E. Lundberg, Leonid Padyukov
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12859-016-0956-2

Trimming of sequence reads alters RNA-Seq gene expression estimates
Cited by: 128
Author(s): Claire Williams, Alyssa Baccarella, Jay Z. Parrish, Charles C. Kim
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0186683

Coastal livelihood transitions under globalization with implications for trans-ecosystem interactions
Cited by: 6
Author(s): Daniel Kramer, Kara Stevens, Nigel Williams, Seeta A. Sistla, Adam B. Roddy, Gerald R. Urquhart
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0174180

Dual energy X-ray absorptiometry body composition reference values of limbs and trunk from NHANES 1999–2004 with additional visualization methods
Cited by: 35
Author(s): Benjamin Hinton, Bo Fan, Bennett K. Ng, John Shepherd
Software Mentions: 3
Published: over 9 years ago

10.1186/s12859-018-2047-z

Oasis 2: improved online analysis of small RNA-seq data
Cited by: 58
Author(s): Raza-Ur Rahman, Abhivyakti Gautam, Joern Bethune, Abdul Sattar, Maksims Fiošins, Daniel Sumner Magruder, Vincenzo Capece, Orr Shomroni, Stefan Bonn
Software Mentions: 3
Published: over 8 years ago

10.1186/s12862-017-1074-0

Evidence of high-altitude adaptation in the glyptosternoid fish, Creteuchiloglanis macropterus from the Nujiang River obtained through transcriptome analysis
Cited by: 17
Author(s): Jingliang Kang, Xiuhui Ma, Shunping He
Software Mentions: 3
Published: over 8 years ago

10.1007/s10198-021-01347-4

Comparison of ARIMA, ETS, NNAR, TBATS and hybrid models to forecast the second wave of COVID-19 hospitalizations in Italy
Cited by: 37
Author(s): Gaetano Perone
Software Mentions: 3
Published: about 5 years ago

10.1186/s40621-021-00339-5

Firearm purchasing and firearm violence during the coronavirus pandemic in the United States: a cross-sectional study
Cited by: 76
Author(s): Julia P. Schleimer, Christopher D. McCort, Aaron Shev, Veronica A. Pear, Elizabeth A. Tomsich, Alaina De Biasi, Shani Buggs, Hannah Laqueur, Garen J. Wintemute
Software Mentions: 3
Published: about 5 years ago

10.1186/s12863-021-00981-4

Transcriptome profiling provides insights into the molecular mechanisms of maize kernel and silk development
Cited by: 0
Author(s): Ting Li, Yapeng Wang, Ying Shi, Xiaonan Gou, Bingpeng Yang, Jianzhou Qu, Xinghua Zhang, Jiquan Xue, Shutu Xu
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-016-3396-5

DEIVA: a web application for interactive visual analysis of differential gene expression profiles
Cited by: 37
Author(s): Jayson Harshbarger, Anton Kratz, Piero Carninci
Software Mentions: 3
Published: over 9 years ago

10.1186/s12864-021-07457-w

Dynamic expression of Ralstonia solanacearum virulence factors and metabolism-controlling genes during plant infection
Cited by: 27
Author(s): Roger de Pedro Jové, Marina Puigvert, Pau Sebastià, Alberto P. Macho, Jhonatas Sirino Monteiro, Núria S. Coll, João Carlos Setúbal, Marc Valls
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-4938-9

eQTL discovery and their association with severe equine asthma in European Warmblood horses
Cited by: 13
Author(s): Victor C. Mason, Robert J. Schaefer, Molly E. McCue, Tosso Leeb, Vinzenz Gerber
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-021-07649-4

Disentangling the aging gene expression network of termite queens
Cited by: 6
Author(s): José Manuel Monroy Kuhn, Karen Meusemann, Judith Korb
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6237-5

Genetic analysis of a white-to-red berry skin color reversion and its transcriptomic and metabolic consequences in grapevine (Vitis vinifera cv. ‘Moscatel Galego’)
Cited by: 14
Author(s): Vanessa Ferreira, José Tomás Matus, Olinda Pinto-Carnide, David Carrasco, Rosa Arroyo-García, Isaura Castro
Software Mentions: 3
Published: over 6 years ago

10.1186/s12864-020-07040-9

Developmentally regulated activation of defense allows for rapid inhibition of infection in age-related resistance to Phytophthora capsici in cucumber fruit
Cited by: 8
Author(s): Ben N. Mansfeld, Marivi Colle, Chunqiu Zhang, Ying-Zu Lin, Rebecca Grumet
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-018-4539-7

The genome of Austrofundulus limnaeus offers insights into extreme vertebrate stress tolerance and embryonic development
Cited by: 19
Author(s): Josiah Tad Wagner, Param Priya Singh, Amie L. Romney, Claire L. Riggs, Patrick Minx, Steven Cody Woll, Jake Roush, Wesley C. Warren, Anne Brunet, Jason E. Podrabsky
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-015-2215-8

Transcriptomes of post-mitotic neurons identify the usage of alternative pathways during adult and embryonic neuronal differentiation
Cited by: 13
Author(s): Alexandra Tallafuß, Meghan W. Kelly, Dan Gibson, Peter Batzel, Kate V. Karfilis, Jonathan A. Eisen, Kryn Stankunas, John H. Postlethwait, Philip Washbourne
Software Mentions: 3
Published: over 10 years ago

10.3389/fimmu.2019.00071

Scoring System for Tumor-Infiltrating Lymphocytes and Its Prognostic Value for Gastric Cancer
Cited by: 99
Author(s): Da-Chuan Zhang, Wenting He, Chao Wu, Yan Tan, Yao He, Bin Xu, Lüjun Chen, Qing Li, Jingting Jiang
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-021-07540-2

Functional genomics of a Spiroplasma associated with the carmine cochineals Dactylopius coccus and Dactylopius opuntiae
Cited by: 7
Author(s): Arturo Vera‐Ponce de León, Marian Dominguez-Mirazo, Rafael Bustamante-Brito, Victor M. Higareda‐Alvear, Mónica Rosenblueth, Esperanza Martı́nez-Romero
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-07940-4

Gene co-expression network analysis in zebrafish reveals chemical class specific modules
Cited by: 6
Author(s): Prarthana Shankar, Ryan McClure, Katrina M. Waters, Robyn L Tanguay
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-020-6682-1

Transcriptomic diversity in seedling roots of European flint maize in response to cold
Cited by: 13
Author(s): Felix P. Frey, Marion Pitz, Chris‐Carolin Schön, Frank Hochholdinger
Software Mentions: 3
Published: over 6 years ago

10.1007/s00414-016-1453-x

Characterization of degradation and heterozygote balance by simulation of the forensic DNA analysis process
Cited by: 21
Author(s): Oskar Hansson, Thore Egeland, Peter Gill
Software Mentions: 3
Published: almost 10 years ago

10.1186/s12864-021-07516-2

Mitochondrial genotype alters the impact of rapamycin on the transcriptional response to nutrients in Drosophila
Cited by: 7
Author(s): John Santiago, Joan M. Boylan, Faye A Lemieux, Philip A. Gruppuso, Jennifer Sanders, David M. Rand
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-6443-1

Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid
Cited by: 32
Author(s): María Luisa Irigoyen, Danielle C. Garceau, Adriana Bohórquez-Chaux, Luís Augusto Becerra López-Lavalle, Laura Pérez-Fons, Paul D. Fraser, Linda L. Walling
Software Mentions: 3
Published: over 6 years ago