10.3390/biom11010114

The Influence of Melatonin and Light on VEGF Secretion in Primary RPE Cells
Cited by: 11
Author(s): Alexa Klettner, Miriam Kampers, Daniela Töbelmann, Johann Roider, Manuela Dittmar
Software Mentions: 1
Published: over 5 years ago

10.3390/biom10091311

Determining the Molecular Background of Endometrial Receptivity in Adenomyosis
Cited by: 11
Author(s): Erika Prašnikar, Tanja Kunej, Jure Knez, Katja Repnik, Uroš Potočnik, Borut Kovačič
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13068-019-1565-x

Discovery and implementation of a novel pathway for n-butanol production via 2-oxoglutarate
Cited by: 12
Author(s): Sofia Ferreira, Rui Pereira, Filipe Liu, Paulo Vilaça, Isabel Rocha
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13068-015-0345-5

Oleaginous yeast platform for producing biofuels via co-solvent hydrothermal liquefaction
Cited by: 49
Author(s): Umakanta Jena, Alex T. McCurdy, Andrew Warren, Hailey M. Summers, Rhesa N. Ledbetter, S. Kent Hoekman, Lance C. Seefeldt, Jason C. Quinn
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41416-020-0763-4

Genetic heterogeneity and evolutionary history of high-grade ovarian carcinoma and matched distant metastases
Cited by: 50
Author(s): Tariq Masoodi, Sarah Siraj, Abdul K. Siraj, Saud Azam, Zeeshan Qadri, Sandeep Kumar Parvathareddy, Asma Tulbah, Fouad Al‐Dayel, Hamed Alhusaini, Osama Alomar, Ismail A. Al‐Badawi, Fowzan S. Alkuraya, Khawla S. Al‐Kuraya
Software Mentions: 1
Published: over 6 years ago

10.3390/pharmaceutics12040380

Real Life Population Pharmacokinetics Modelling of Eight Factors VIII in Patients with Severe Haemophilia A: Is It Always Relevant to Switch to an Extended Half-Life?
Cited by: 11
Author(s): Quentin Allard, Zoubir Djerada, Claire Pouplard, Yohann Repessé, Dominique Desprez, Hubert Galinat, Birgit Frotscher, Claire Berger, Annie Harroche, Anne Ryman, Claire Flaujac, Pierre Chamouni, Benoît Guillet, Fabienne Volot, Jean Szymezak, Philippe Nguyên, Yoann Cazaubon
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.610294

Creatinine Trends to Detect Ibuprofen-Related Maturational Adverse Drug Events in Neonatal Life: A Simulation Study for the ELBW Newborn
Cited by: 1
Author(s): Tamara van Donge, Karel Allegaert, Marc Pfister, Anne Smits, John van den Anker
Software Mentions: 1
Published: over 5 years ago

10.1002/advs.202100249

Exploiting Generative Design for 3D Printing of Bacterial Biofilm Resistant Composite Devices
Cited by: 7
Author(s): Yinfeng He, Meisam Abdi, Gustavo F. Trindade, Belén Begines, Jean‐Frédéric Dubern, Elisabetta Prina, Andrew L. Hook, Gabriel Y. H. Choong, Javier Ledesma, Christopher Tuck, Felicity R. A. J. Rose, Richard Hague, Clive J. Roberts, Davide S.A. De Focatiis, Ian Ashcroft, Paul Williams, Derek J. Irvine, Morgan R. Alexander, Ricky Wildman
Software Mentions: 1
Published: about 5 years ago

10.3390/antibiotics9120846

Proposal of Potent Inhibitors for a Bacterial Cell Division Protein FtsZ: Molecular Simulations Based on Molecular Docking and ab Initio Molecular Orbital Calculations
Cited by: 1
Author(s): Shohei Yamamoto, Ryosuke Saito, Shunya Nakamura, Haruki Sogawa, П. А. Карпов, Sergiy Shulga, Yaroslav B. Blume, Noriyuki Kurita
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-6291-z

Improving CRISPR guide design with consensus approaches
Cited by: 5
Author(s): Jacob Bradford, Dimitri Perrin
Software Mentions: 1
Published: over 6 years ago

10.1186/s12911-017-0453-1

Modeling long-term human activeness using recurrent neural networks for biometric data
Cited by: 6
Author(s): Zae Myung Kim, Hyungrai Oh, Han‐Gyu Kim, Chae-Gyun Lim, Kyo-Joong Oh, Ho-Jin Choi
Software Mentions: 1
Published: over 9 years ago

10.1186/1753-6561-6-S2-S2

Comparison of the analyses of the XVth QTLMAS common dataset II: QTL analysis
Cited by: 1
Author(s): Olivier Demeure, Olivier Filangi, Jean-Michel Elsen, Pascale Le Roy
Software Mentions: 1
Published: over 14 years ago

10.3390/bs11090125

A Multilevel Approach to Explore the Wandering Mind and Its Connections with Mindfulness and Personality
Cited by: 2
Author(s): Damiano Cantone, Susanna Feruglio, Cristiano Crescentini, Sabrina Cinot, Alessio Matiz
Software Mentions: 1
Published: almost 5 years ago

10.1002/brb3.1912

Fat compartments in patients with depression: A meta‐analysis
Cited by: 8
Author(s): Alisa Susann Cosan, Julietta Ursula Schweiger, Kai G. Kahl, Bettina Hamann, Michael Deuschle, Ulrich Schweiger, Anna Lisa Westermair
Software Mentions: 1
Published: almost 6 years ago

10.1186/bcr2896

Epithelial to mesenchymal transition markers expressed in circulating tumour cells of early and metastatic breast cancer patients
Cited by: 324
Author(s): Galatea Kallergi, Maria A. Papadaki, Eleni Politaki, Dimitris Mavroudis, Vassilis Georgoulias, Sofia Agelaki
Software Mentions: 1
Published: about 15 years ago

10.1155/2017/2105610

Sulfonanilide Derivatives in Identifying Novel Aromatase Inhibitors by Applying Docking, Virtual Screening, and MD Simulations Studies
Cited by: 19
Author(s): Shailima Rampogu, Maeng-Hyun Son, Chanin Park, Hyong-Ha Kim, Jung Keun Suh, Keun Woo Lee
Software Mentions: 1
Published: over 9 years ago

10.1155/2013/460936

Prolonged Delivery of Ciprofloxacin and Diclofenac Sodium from a Polymeric Fibre Device for the Treatment of Peridontal Disease
Cited by: 17
Author(s): Deanne Johnston, Yahya E. Choonara, Pradeep Kumar, Lisa C. du Toit, Sandy van Vuuren, Viness Pillay
Software Mentions: 1
Published: over 13 years ago

10.3390/biom10091205

Multivalent and Bidirectional Binding of Transcriptional Transactivation Domains to the MED25 Coactivator
Cited by: 1
Author(s): Heather Jeffery, Robert O. J. Weinzierl
Software Mentions: 1
Published: about 6 years ago

10.1007/s00223-015-0081-7

Non-invasive Assessment of Lower Limb Geometry and Strength Using Hip Structural Analysis and Peripheral Quantitative Computed Tomography: A Population-Based Comparison
Cited by: 8
Author(s): Anna Litwic, Michael Clynes, Hayley Denison, Karen Jameson, M H Edwards, A A Sayer, P Taylor, Cyrus Cooper, Elaine Dennison
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12935-021-01850-x

CDCA8 as an independent predictor for a poor prognosis in liver cancer
Cited by: 18
Author(s): Shuai Yu, Erxi Fan, Qiu‐Yue Zhong, Qiying Chen, Guangyong Feng, Xiaoxia Gou, Guihai Zhang
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.1603

DSCAM-AS1 regulates the G₁ /S cell cycle transition and is an independent prognostic factor of poor survival in luminal breast cancer patients treated with endocrine therapy
Cited by: 25
Author(s): Wei Sun, An Qi Li, Ping Zhou, Yi Jiang, Xi Jin, Yi-Rong Liu, Ya Guo, Wentao Yang, Zhimin Shao, Xiao Xu
Software Mentions: 1
Published: almost 8 years ago

10.1002/cam4.3954

Significantly high expression of NUP37 leads to poor prognosis of glioma patients by promoting the proliferation of glioma cells
Cited by: 2
Author(s): Zhendong Liu, Hongbo Wang, Yongsheng Jia, Jialin Wang, Yanbiao Wang, Biao Lü, Binfeng Liu, Xiaoyu Lian, Bo Zhang, Zhishuai Ren, Wang Zhang, Weiwei Dai, Yanzheng Gao
Software Mentions: 1
Published: about 5 years ago

10.1002/cam4.1179

Novel ATP‐competitive Akt inhibitor afuresertib suppresses the proliferation of malignant pleural mesothelioma cells
Cited by: 39
Author(s): Masayuki Yamaji, Akinobu Ota, Md Wahiduzzaman, Sivasundaram Karnan, Toshinori Hyodo, Hiroyuki Konishi, Shinobu Tsuzuki, Yoshitaka Hosokawa, Masayuki Haniuda
Software Mentions: 1
Published: almost 9 years ago

10.1002/lrh2.10234

Transforming public health using value lens and extended partner networks
Cited by: 2
Author(s): Mohan Tanniru
Software Mentions: 1
Published: about 6 years ago

10.1038/s41375-021-01161-0

EZH2 inactivation in RAS-driven myeloid neoplasms hyperactivates RAS-signaling and increases MEK inhibitor sensitivity
Cited by: 3
Author(s): Johannes Lorenz Berg, Bianca Perfler, Stefan Hatzl, Barbara Uhl, Andreas Reinisch, Gudrun Pregartner, Andrea Berghold, Thomas Penz, Michael Schuster, Klaus Geißler, Andreas Prokesch, Carsten Müller‐Tidow, Gerald Höefler, Karl Kashofer, Albert Wölfler, Heinz Sill, Veronica Caraffini, Armin Zebisch
Software Mentions: 1
Published: over 5 years ago

10.3390/md11082894

Development of Synechocystis sp. PCC 6803 as a Phototrophic Cell Factory
Cited by: 108
Author(s): Yi Yu, Le You, Dianyi Liu, Whitney D. Hollinshead, Yinjie J. Tang, Fuzhong Zhang
Software Mentions: 1
Published: about 13 years ago

10.3390/md13020948

Design and Synthesis of Novel Xyloketal Derivatives and Their Protective Activities against H2O2-Induced HUVEC Injury
Cited by: 14
Author(s): Shixin Liu, Rong Luo, Qi Xiang, Xiaoling Xu, Liqin Qiu, Jiyan Pang
Software Mentions: 1
Published: over 11 years ago

10.1007/s11517-020-02158-0

The implications of non-anatomical positioning of a meniscus prosthesis on predicted human knee joint biomechanics
Cited by: 3
Author(s): Hamid Naghibi Beidokhti, Dennis Janssen, A.H. van den Boogaard, Tony van Tienen, Nico Verdonschot
Software Mentions: 1
Published: over 6 years ago

10.1097/MD.0000000000021403

Cortical thickness in Parkinson disease
Cited by: 5
Author(s): LiQin Sheng, PanWen Zhao, HaiRong Ma, Joaquim Raduà, ZhongQuan Yi, Yuanyuan Shi, JianGuo Zhong, Zhenyu Dai, PingLei Pan
Software Mentions: 1
Published: about 6 years ago

10.4317/medoral.21073

Rapid maxillary expansion and obstructive sleep apnea: A review and meta-analysis
Cited by: 29
Author(s): Almiro José Machado Júnior, Edilson Zancanella, Agrício-Nubiato Crespo
Software Mentions: 1
Published: over 10 years ago

10.1186/s12889-020-08848-6

Interventions to prevent or treat childhood obesity in Māori & Pacific Islanders: a systematic review
Cited by: 9
Author(s): Robyn Littlewood, Oliver J. Canfell, Jacqueline L. Walker
Software Mentions: 1
Published: over 6 years ago

10.3390/biom11091349

Advanced Molecular Dynamics Approaches to Model a Tertiary Complex APRIL/TACI with Long Glycosaminoglycans
Cited by: 5
Author(s): Mateusz Marcisz, Martyna Maszota‐Zieleniak, Bertrand Huard, Sergey A. Samsonov
Software Mentions: 1
Published: almost 5 years ago

10.1177/1073274819856885

Overall Results for a National Program of Photodynamic Therapy for Basal Cell Carcinoma: A Multicenter Clinical Study to Bring New Techniques to Social Health Care
Cited by: 19
Author(s): Hilde Harb Buzzá, Lílian Tan Moriyama, José Dirceu Vollet‐Filho, Natália Mayumi Inada, Ana Paula da Silva, Mirian Denise Stringasci, Michelle Barreto Requena, Cintia Teles de Andrade, Kate Cristina Blanco, Dora Patrícia Ramirez, Cristina Kurachi, Ana Gabriela Sálvio, Vanderlei Salvador Bagnato
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules26020493

Achiral Molecular Recognition of Substituted Aniline Position Isomers by Crown Ether Type Chiral Stationary Phase
Cited by: 9
Author(s): Akira Ohnishi, Tsugumichi Shibata, Tatsuya Imase, Satoshi Shinkura, Kanji Nagai
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules201219865

Unfolded Protein Response and Macroautophagy in Alzheimer’s, Parkinson’s and Prion Diseases
Cited by: 29
Author(s): Irina Milisav, Dušan Šuput, Samo Ribarič
Software Mentions: 1
Published: over 10 years ago

10.3390/molecules26113264

Development of Halogenated Pyrazolines as Selective Monoamine Oxidase-B Inhibitors: Deciphering via Molecular Dynamics Approach
Cited by: 8
Author(s): Aathira Sujathan Nair, Jong‐Min Oh, Vishal Payyalot Koyiparambath, Sunil Kumar, Sachithra Thazhathuveedu Sudevan, Opeyemi Soremekun, Mahmoud E. S. Soliman, Ahmed Khames, Mohamed A. Abdelgawad, Leena K. Pappachen, Bijo Mathew, Hoon Kim
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules26051302

Interactions of Sea Anemone Toxins with Insect Sodium Channel—Insights from Electrophysiology and Molecular Docking Studies
Cited by: 4
Author(s): Beata Niklas, Milena Jankowska, Dalia Gordon, L. Béress, Maria Stankiewicz, Wiesław Nowak
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules24040750

Chlamyphilone, a Novel Pochonia chlamydosporia Metabolite with Insecticidal Activity
Cited by: 11
Author(s): Federica Lacatena, Roberta Marra, Pierluigi Mazzei, Alessandro Piccolo, M. Cristina Digilio, Massimo Giorgini, Sheridan Lois Woo, Pierpaolo Cavallo, Matteo Lorito, Francesco Vinale
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules25051165

Interaction of Coumarin Phytoestrogens with ERα and ERβ: A Molecular Dynamics Simulation Study
Cited by: 10
Author(s): Ting Wang, Yunfei Wang, Xuming Zhuang, Feng Luan, Chunyan Zhao, M. Natália D. S. Cordeiro
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules26082211

Identification of Vinyl Sulfone Derivatives as EGFR Tyrosine Kinase Inhibitor: In Vitro and In Silico Studies
Cited by: 19
Author(s): Thitinan Aiebchun, Panupong Mahalapbutr, Atima Auepattanapong, Onnicha Khaikate, Supaphorn Seetaha, Lueacha Tabtimmai, Chutima Kuhakarn, Kiattawee Choowongkomon, Thanyada Rungrotmongkol
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules17067415

Application of 4D-QSAR Studies to a Series of Raloxifene Analogs and Design of Potential Selective Estrogen Receptor Modulators
Cited by: 10
Author(s): Sodero Ac, Romeiro Nc, da Cunha Ef, de Oliveira Magalhaães U, de Alencastro Rb, Rodrígues Cr, Cabral Lm, Helena C. Castro, Magaly Girão Albuquerque
Software Mentions: 1
Published: about 14 years ago

10.3390/ph5060591

a-Anilinoketones, Esters and Amides: A Chemical Study
Cited by: 8
Author(s): Amjad M. Qandil, Lara Fakhouri
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pcbi.1003874

Predicting the Functions and Specificity of Triterpenoid Synthases: A Mechanism-Based Multi-intermediate Docking Approach
Cited by: 22
Author(s): Bo Xue Tian, Frank Wallrapp, Gemma L. Holiday, Jeng Yeong Chow, Patricia C. Babbitt, C. Dale Poulter, Matthew P. Jacobson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1002083

Predicting Binding to P-Glycoprotein by Flexible Receptor Docking
Cited by: 90
Author(s): Elena Dolghih, Clifford Bryant, Adam R. Renslo, Matthew P. Jacobson
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pcbi.1006504

The Cultural Brain Hypothesis: How culture drives brain expansion, sociality, and life history
Cited by: 74
Author(s): Michael Muthukrishna, Michael Doebeli, Maciej Chudek, Joseph Henrich
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1000546

Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase
Cited by: 23
Author(s): İbrahim Barış, Aytuğ Tuncel, Natali Özber, Özlem Keskin, İbrahim Halil Kavaklı
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0064675

Coarse-Grained/Molecular Mechanics of the TAS2R38 Bitter Taste Receptor: Experimentally-Validated Detailed Structural Prediction of Agonist Binding
Cited by: 63
Author(s): Alessandro Marchiori, Luciana Capece, Alejandro Giorgetti, Paolo Gasparini, Maik Behrens, Paolo Carloni, Wolfgang Meyerhof
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0070521

Conformational Stability of Fibrillar Amyloid-Beta Oligomers via Protofilament Pair Formation – A Systematic Computational Study
Cited by: 63
Author(s): Anna K. Kähler, Heinrich Sticht, Anselm H. C. Horn
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0077081

Discovery of Mycobacterium tuberculosis Protein Tyrosine Phosphatase B (PtpB) Inhibitors from Natural Products
Cited by: 45
Author(s): Alessandra Mascarello, Mattia Mori, Louise Domeneghini Chiaradia-Delatorre, Angela Camila Orbem Menegatti, Franco Delle Monachè, Franco Ferrari, Rosendo A. Yunes, Ricardo José Nunes, Hernán Terenzi, Bruno Botta, Maurizio Botta
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0090799

Molecular Modeling Study on the Allosteric Inhibition Mechanism of HIV-1 Integrase by LEDGF/p75 Binding Site Inhibitors
Cited by: 18
Author(s): Weiwei Xue, Huanxiang Liu, Xiaojun Yao
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0210869

Thioguanine-based DENV-2 NS2B/NS3 protease inhibitors: Virtual screening, synthesis, biological evaluation and molecular modelling
Cited by: 30
Author(s): Maywan Hariono, Sy Bing Choi, Ros Fatihah Roslim, Mohamed Sufian Mohd. Nawi, Mei Lan Tan, Ezatul Ezleen Kamarulzaman, Norita Mohamed, Rohana Yusof, Shatrah Othman, Noorsaadah Abd. Rahman, Rozana Othman, Habibah A. Wahab
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0077141

Reaction Trajectory Revealed by a Joint Analysis of Protein Data Bank
Cited by: 16
Author(s): Zhong Ren
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0109639

Study of the Affinity between the Protein Kinase PKA and Peptide Substrates Derived from Kemptide Using Molecular Dynamics Simulations and MM/GBSA
Cited by: 17
Author(s): Karel Mena-Ulecia, Ariela Vergara-Jaque, Horacio Poblete, William Tiznado, Julio Caballero
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0058173

T3_MM: A Markov Model Effectively Classifies Bacterial Type III Secretion Signals
Cited by: 35
Author(s): Yejun Wang, Miao‐Kun Sun, Hongchu Bao, Aaron P. White
Software Mentions: 1
Published: over 13 years ago

10.1186/s13018-019-1388-2

A systematic review of the single-stage treatment of chronic osteomyelitis
Cited by: 37
Author(s): Bethan Pincher, Carl Fenton, Rathan Jeyapalan, Gavin Barlow, Hemant Sharma
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo2030632

A Topological Characterization of Medium-Dependent Essential Metabolic Reactions
Cited by: 10
Author(s): Nikolaus Sonnenschein, Carsten Marr, Marc‐Thorsten Hütt
Software Mentions: 1
Published: almost 14 years ago

10.3390/metabo10030081

Metabolic Profiling of Glucose-Fed Metabolically Active Resting Zymomonas mobilis Strains
Cited by: 9
Author(s): Katsuya Fuchino, Uldis Kalnenieks, Reinis Rutkis, Māra Grūbe, Per Bruheim
Software Mentions: 1
Published: over 6 years ago

10.3390/metabo9020025

The OMICs Window into Nonalcoholic Fatty Liver Disease (NAFLD)
Cited by: 5
Author(s): Lucia Carulli, Giulia Zanca, Filippo Schepis, Erica Villa
Software Mentions: 1
Published: over 7 years ago

10.1186/1475-2859-10-99

Microbial production of hyaluronic acid: current state, challenges, and perspectives
Cited by: 287
Author(s): Long Liu, Yanfeng Liu, Jianghua Li, Guocheng Du, Jian Chen
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12934-019-1083-3

Engineering microbial consortia by division of labor
Cited by: 157
Author(s): Garrett W. Roell, Jian Zha, Rhiannon Carr, Mattheos Koffas, Stephen S. Fong, Yinjie J. Tang
Software Mentions: 1
Published: over 7 years ago

10.1186/1475-2859-8-43

Development and experimental verification of a genome-scale metabolic model for Corynebacterium glutamicum
Cited by: 102
Author(s): Yohei Shinfuku, Natee Sorpitiporn, Masahiro Sono, Chikara Furusawa, Takashi Hirasawa, Hiroshi Shimizu
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0147190

Exploration of Novel Inhibitors for Bruton’s Tyrosine Kinase by 3D QSAR Modeling and Molecular Dynamics Simulation
Cited by: 23
Author(s): Rohit Bavi, Raj Kumar, Light Choi, Keun Woo Lee
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms9020450

In Vitro Anti-Biofilm and Antibacterial Properties of Streptococcus downii sp. nov.
Cited by: 6
Author(s): M. L. Cuenca, María Carmen Sánchez, Pedro Diz Dios, Lucía Martínez-Lamas, Manuel Penín Álvarez, Jacobo Limeres, Mariano Sanz, David Herrera
Software Mentions: 1
Published: over 5 years ago

10.1038/s41378-020-0165-z

Neurodevelopmental impairment induced by prenatal valproic acid exposure shown with the human cortical organoid-on-a-chip model
Cited by: 30
Author(s): Kaifeng Cui, Yaqing Wang, Yujuan Zhu, Tingting Tao, Fangchao Yin, Yaqiong Guo, Haitao Liu, Fĕi Li, Peng Wang, Yuejun Chen, Jianhua Qin
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0143752

Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone Proteins
Cited by: 45
Author(s): Gabrielle Stetz, Gennady M. Verkhivker
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0096031

Resolving Hot Spots in the C-Terminal Dimerization Domain that Determine the Stability of the Molecular Chaperone Hsp90
Cited by: 25
Author(s): Emanuele Ciglia, Janina Vergin, Sven Reimann, Sander H. J. Smits, Lutz Schmitt, Georg Groth, Holger Gohlke
Software Mentions: 1
Published: over 12 years ago

10.3390/cancers13174332

Minimal Residual Disease in Multiple Myeloma: Something Old, Something New
Cited by: 6
Author(s): Carlos Bravo-Pérez, M. A. Sola, Raúl Teruel‐Montoya, María-Dolores García-Malo, Francisco José Ortuño, Vicente Vicente, Felipe de Arriba, Andrés Jerez
Software Mentions: 1
Published: almost 5 years ago

10.1186/1476-4598-8-75

The rapamycin-regulated gene expression signature determines prognosis for breast cancer
Cited by: 27
Author(s): Argun Akçakanat, Li Zhang, Spiridon Tsavachidis, Funda Meric‐Bernstam
Software Mentions: 1
Published: almost 17 years ago

10.1186/s13065-018-0422-5

Structural determinants influencing halogen bonding: a case study on azinesulfonamide analogs of aripiprazole as 5-HT1A, 5-HT7, and D2 receptor ligands
Cited by: 8
Author(s): Krzysztof Marciniec, Rafał Kurczab, Maria Książek, Ewa Bębenek, Elwira Chrobak, Grzegorz Satała, Andrzej J. Bojarski, Joachim Kusz, Paweł Zajdel
Software Mentions: 1
Published: over 8 years ago

10.1039/c6sc05381e

Simultaneous engineering of an enzyme's entrance tunnel and active site: the case of monoamine oxidase MAO-N
Cited by: 81
Author(s): Guangyue Li, Peiyuan Yao, Rui Gong, Jinlong Li, Li Pi, Richard Lonsdale, Qingping Wu, Jianping Lin, Dunming Zhu, Manfred T. Reetz
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules26164839

Chemometrics for the Identification of Nitrogen and Acid Compounds in Milk-Whey as By-Products from Crescenza and Grana Padano Type Cheese-Making
Cited by: 1
Author(s): Stefania Barzaghi, Lucia Monti, Laura Marinoni, T. M. P. Cattaneo
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules25122831

Plasma-Based Proteomics Profiling of Patients with Hyperthyroidism after Antithyroid Treatment
Cited by: 17
Author(s): Afshan Masood, Aishah Ekhzaimy, Assim A. Alfadda
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules25122933

Metabolomic Signature Discriminates Normal Human Cornea from Keratoconus—A Pilot GC/MS Study
Cited by: 15
Author(s): Anna Wojakowska, Monika Pietrowska, Piotr Widłak, Dariusz Dobrowolski, Edward Wylęgała, Dorota Tarnawska
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules191016058

Synthesis and Sar Study of Diarylpentanoid Analogues as New Anti-Inflammatory Agents
Cited by: 47
Author(s): Sze Wei Leong, Siti Munirah Mohd Faudzi, Faridah Abas, Mohd Fadhlizil Fasihi Mohd Aluwi, Kamal Rullah, Kok Wai Lam, Mohd Nazri Abdul Bahari, Sadeem Ahmad, Chau Ling Tham, Khozirah Shaari, Nordin H. Lajis
Software Mentions: 1
Published: almost 12 years ago

10.15252/embr.201948317

TBK1‐mediated phosphorylation of LC3C and GABARAP‐L2 controls autophagosome shedding by ATG4 protease
Cited by: 49
Author(s): Lina Herhaus, Ramachandra M Bhaskara, Alf Håkon Lystad, Uxía Gestal-Mato, Adriana Covarrubias‐Pinto, Florian Bonn, Anne Simonsen, Gerhard Hummer, Ivan Đikić
Software Mentions: 1
Published: almost 7 years ago

10.3390/e21060551

MEMe: An Accurate Maximum Entropy Method for Efficient Approximations in Large-Scale Machine Learning
Cited by: 15
Author(s): Diego Granziol, Binxin Ru, Stefan Zohren, Xiaowen Doing, Michael A. Osborne, Stephen Roberts
Software Mentions: 1
Published: about 7 years ago

10.3389/fchem.2019.00602

Structural, Thermodynamic, and Kinetic Traits of Antiestrogen-Compounds Selectively Targeting the Y537S Mutant Estrogen Receptor α Transcriptional Activity in Breast Cancer Cell Lines
Cited by: 6
Author(s): Matic Pavlin, Luca Gelsomino, Ines Barone, Angelo Spinello, Stefania Catalano, Sebastiano Andò, Alessandra Magistrato
Software Mentions: 1
Published: almost 7 years ago

10.3389/fchem.2018.00062

Chloride Ion Transport by the E. coli CLC Cl−/H+ Antiporter: A Combined Quantum-Mechanical and Molecular-Mechanical Study
Cited by: 9
Author(s): Chun‐Hung Wang, Adam W. Duster, Baris O. Aydintug, MacKenzie G. Zarecki, Hai Lin
Software Mentions: 1
Published: over 8 years ago

10.3389/fchem.2019.00536

The Role of Proton Transfer on Mutations
Cited by: 38
Author(s): Ruby Srivastava
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0083864

Molecular Characterization of Trypanosoma cruzi SAP Proteins with Host-Cell Lysosome Exocytosis-Inducing Activity Required for Parasite Invasion
Cited by: 13
Author(s): Tamiris Zanforlin, Ethel Bayer-Santos, Cristian Cortéz, Igor C. Almeida, Nobuko Yoshida, José Franco da Silveira
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0149859

Sterile α Motif Domain Containing 9 Is a Novel Cellular Interacting Partner to Low-Risk Type Human Papillomavirus E6 Proteins
Cited by: 9
Author(s): Jia Wang, Crystal Dupuis, Stephen K. Tyring, Michael P. Underbrink
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0001965

EWS/FLI Mediates Transcriptional Repression via NKX2.2 during Oncogenic Transformation in Ewing's Sarcoma
Cited by: 132
Author(s): Leah A. Owen, Ashley A. Kowalewski, Stephen L. Lessnick
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0206150

Differences in sperm protein abundance and carbonylation level in bull ejaculates of low and high quality
Cited by: 15
Author(s): Agnieszka Mostek, Błażej Westfalewicz, Mariola Słowińska, Mariola A. Dietrich, Sylwia Judycka, Andrzej Ciereszko
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0008834

Molecular Interaction Studies of Trimethoxy Flavone with Human Serum Albumin
Cited by: 97
Author(s): Mahesh Gokara, Babu Sudhamalla, Amooru G. Damu, Rajagopal Subramanyam
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0092970

Mass Spectrometry-Based Comparative Sequence Analysis for the Genetic Monitoring of Influenza A(H1N1)pdm09 Virus
Cited by: 2
Author(s): Jairo Gooskens, Jessika C. Zevenhoven-Dobbe, Eric C. J. Claas, Aloys C.M. Kroes, Clara C. Posthuma
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0138336

ERBB3 Positively Correlates with Intestinal Stem Cell Markers but Marks a Distinct Non Proliferative Cell Population in Colorectal Cancer
Cited by: 16
Author(s): Thierry Jardé, Lisa Kass, Margaret Staples, Helen E Lescesen, Peter Carne, Karen Oliva, Paul McMurrick, Helen E. Abud
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0073185

Association between Body Water Status and Acute Mountain Sickness
Cited by: 29
Author(s): Hannes Gatterer, Maria Wille, Martin Faulhaber, Henry C. Lukaski, Andreas Melmer, Christoph Ebenbichler, Martin Burtscher
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0039903

Design Constraints on a Synthetic Metabolism
Cited by: 9
Author(s): Tugce Bilgin, Andreas Wagner
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0082825

Nutrigenomics of High Fat Diet Induced Obesity in Mice Suggests Relationships between Susceptibility to Fatty Liver Disease and the Proteasome
Cited by: 38
Author(s): Helen Waller-Evans, Christophe Hue, Jane Fearnside, Alice Rothwell, Helen Lockstone, Sophie Caldérari, Steven P. Wilder, Jean‐Baptiste Cazier, James A. Scott, Dominique Guyader
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0129139

Barratt Impulsivity and Neural Regulation of Physiological Arousal
Cited by: 28
Author(s): Sheng Zhang, Sien Hu, Jianping Hu, Po-Lun Wu, Herta H. Chao, Chiang‐Shan R. Li
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0199970

18F-FDG PET intensity correlates with a hypoxic gene signature and other oncogenic abnormalities in operable non-small cell lung cancer
Cited by: 12
Author(s): Brendan T. Heiden, Guoan Chen, Matthew Hermann, Richard K. Brown, Mark B. Orringer, Jules Lin, Andrew C. Chang, Philip W. Carrott, William R. Lynch, Lili Zhao, David G. Beer, Rishindra M. Reddy
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0143630

Experimental Crossing of Two Distinct Species of Leopard Geckos, Eublepharis angramainyu and E. macularius: Viability, Fertility and Phenotypic Variation of the Hybrids
Cited by: 11
Author(s): Jitka Jančúchová‐Lásková, Eva Landová, Daniel Frynta
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0175300

Integrin β1 activation induces an anti-melanoma host response
Cited by: 9
Author(s): Laila Ritsma, Ipsita Dey‐Guha, Nilesh P. Talele, Xavier Solé, Salony, Joeeta Chowdhury, Kenneth N. Ross, Sridhar Ramaswamy
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0144786

Using Bayesian Population Viability Analysis to Define Relevant Conservation Objectives
Cited by: 11
Author(s): Adam W. Green, Larissa L. Bailey
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0090284

IL-17 Induces an Expanded Range of Downstream Genes in Reconstituted Human Epidermis Model
Cited by: 141
Author(s): Andrea Chiricozzi, Kristine Nograles, Leanne M. Johnson-Huang, Judilyn Fuentes‐Duculan, Irma Cardinale, Kathleen M. Bonifacio, Nicholas Gulati, Hiroshi Mitsui, Emma Guttman‐Yassky, Mayte Suárez‐Fariñas, James G. Krueger
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0008146

JC Virus Mediates Invasion and Migration in Colorectal Metastasis
Cited by: 44
Author(s): Alexander Link, Sung Kwan Shin, Takeshi Nagasaka, Francesc Balaguer, Minoru Koi, Barbara Jung, C. Richard Boland, Ajay Goel
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0172955

Site-specific gene expression profiling as a novel strategy for unravelling keloid disease pathobiology
Cited by: 34
Author(s): Natalie Jumper, Tom Hodgkinson, Ralf Paus, Ardeshir Bayat
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0033787

Genes Involved in Systemic and Arterial Bed Dependent Atherosclerosis - Tampere Vascular Study
Cited by: 38
Author(s): Mari Levula, Niku Oksala, Nina Airla, Rainer Zeitlin, Juha-Pekka Salenius, Otso Järvinen, Maarit Venermo, Teemu Partio, Jukka T. Saarinen, Taija Liisa Somppi, Velipekka Suominen, Jyrki Virkkunen, Juha Hautalahti, Reijo Laaksonen, Mika Kähönen, Ari Mennander, Leena Kytömäki, Jari Soini, Jyrki Parkkinen, Markku Pelto‐Huikko, Terho Lehtimäki
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0225841

Orbit image analysis machine learning software can be used for the histological quantification of acute ischemic stroke blood clots
Cited by: 50
Author(s): Seán Fitzgerald, Shunli Wang, Daying Dai, Dennis H. Murphree, Abhay Pandit, Andrew Douglas, Asim Rizvi, Ramanathan Kadirvel, Michael Gilvarry, Ray McCarthy, Manuel Stritt, Matthew J. Gounis, Waleed Brinjikji, David F. Kallmes, Karen M. Doyle
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0062124

Association between Tumorigenic Potential and the Fate of Cancer Cells in a Syngeneic Melanoma Model
Cited by: 8
Author(s): Yakov Krelin, Liron Berkovich, Moran Amit, Ziv Gil
Software Mentions: 1
Published: over 13 years ago