10.1186/1755-8794-3-5

Insight in modulation of inflammation in response to diclofenac intervention: a human intervention study
Cited by: 34
Author(s): Marjan J. van Erk, Suzan Wopereis, Carina M. Rubingh, T. van Vliet, Elwin Verheij, N.H.P. Cnubben, Theresa L. Pedersen, John W. Newman, Age K. Smilde, J. van der Greef, H. Hendriks, Ben van Ommen
Software Mentions: 1
Published: over 16 years ago

10.1186/1755-8794-2-18

PrognoScan: a new database for meta-analysis of the prognostic value of genes
Cited by: 698
Author(s): Hideaki Mizuno, Koji Kitada, Katsunori Nakai, Akinori Sarai
Software Mentions: 1
Published: over 17 years ago

10.1038/s41597-020-00609-9

A structured open dataset of government interventions in response to COVID-19
Cited by: 130
Author(s): Amélie Desvars-Larrive, Elma Dervić, Nils Haug, Thomas Niederkrotenthaler, Jiaying Chen, Anna Di Natale, Jana Lasser, Diana S. Gliga, Alexandra Roux, Johannes Sorger, Abhijit Chakraborty, Alexandr Ten, Alija Dervić, Andrea Pacheco, Ania Jurczak, David Cserjan, Diana Lederhilger, Dominika Bulska, Dorontinë Berishaj, Erwin Flores Tames, Francisco S. Álvarez, Huda Takriti, Jan Korbel, Jenny Reddish, Joanna Grzymała-Moszczyńska, Johannes Stangl, Lamija Hadziavdic, Laura Stoeger, Leana Gooriah, Lukas Geyrhofer, Márcia Regina Ferreira, Marta Bartoszek, Rainer Vierlinger, Samantha Holder, Simon Haberfellner, Verena Ahne, Viktoria Reisch, Vito D. P. Servedio, Xiao Chen, Xochilt Pocasangre-Orellana, Zuzanna Garncarek, David García, Stefan Thurner
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.01093-20

A 39-Amino-Acid C-Terminal Truncation of GDV1 Disrupts Sexual Commitment in Plasmodium falciparum
Cited by: 12
Author(s): Marta Tibúrcio, Eva Hitz, Igor Niederwieser, Gavin Kelly, Heledd Davies, Christian Doerig, Oliver Billker, Till S. Voss, Moritz Treeck
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0166979

Natural Schistosoma mansoni Infection in the Wild Reservoir Nectomys squamipes Leads to Excessive Lipid Droplet Accumulation in Hepatocytes in the Absence of Liver Functional Impairment
Cited by: 24
Author(s): Kátia B. Amaral, Thiago Pereira da Silva, Kássia K. Malta, Lívia A. S. Carmo, Felipe F. Dias, Mariana Ramos Almeida, Gustavo F. S. Andrade, Jefferson S. Martins, R.R. Pinho, Sócrates Fraga da Costa-Neto, Rosana Gentile, Rossana C. N. Melo
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2180-10-106

The HP0256 gene product is involved in motility and cell envelope architecture of Helicobacter pylori
Cited by: 3
Author(s): François P. Douillard, Kevin Ryan, Michael Lane, Delphine L. Caly, Stanley A. Moore, Charles W. Penn, Jason Hinds, Paul W. O’Toole
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2180-9-246

Global transcriptional response of pig brain and lung to natural infection by Pseudorabies virus
Cited by: 7
Author(s): J. F. Yuan, Zhang Sj, Osman Jafer, RA Furlong, OE Chausiaux, Carole A. Sargent, Zhang Gh, Nabeel A. Affara
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2180-12-104

The distribution of plasmids that carry virulence and resistance genes in Staphylococcus aureus is lineage associated
Cited by: 120
Author(s): Alex J. McCarthy, Jodi A. Lindsay
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2199-8-112

Checkpoint independence of most DNA replication origins in fission yeast
Cited by: 36
Author(s): Katie L Mickle, Sunita Ramanathan, Adam P. Rosebrock, Anna Maria Oliva, Amna Chaudari, Chulee Yompakdee, David Scott, Janet Leatherwood, Joel A. Huberman
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2202-6-28

Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method
Cited by: 12
Author(s): Maria Sievertzon, Valtteri Wirta, Alex Mercer, Konstantinos Meletis, Rikard Erlandsson, Lilian Wikström, Jonas Frisén, Joakim Lundeberg
Software Mentions: 1
Published: over 21 years ago

10.1186/1471-2229-14-155

Salicylic acid signaling inhibits apoplastic reactive oxygen species signaling
Cited by: 61
Author(s): Enjun Xu, Mikael Brosché
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2229-12-204

Expression of geminiviral AC2 RNA silencing suppressor changes sugar and jasmonate responsive gene expression in transgenic tobacco plants
Cited by: 39
Author(s): Arto Soitamo, Balaji Jada, Kirsi Lehto
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-9-19

TRUNCATULIX - a data warehouse for the legume community
Cited by: 11
Author(s): Kolja Henckel, Kai J. Runte, Thomas Bekel, Michael Dondrup, Tobias Jakobi, H. Küster, Alexander Goesmann
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2229-12-74

Effects of yeast trehalose-6-phosphate synthase 1 on gene expression and carbohydrate contents of potato leaves under drought stress conditions
Cited by: 57
Author(s): Mihály Kondrák, Ferenc Marincs, Ferenc Antal, Zsófia Juhász, Zsófia Bánfalvi
Software Mentions: 1
Published: about 14 years ago

10.1186/1753-6561-5-S4-S4

Jejunal gene expression patterns correlate with severity of systemic infection in chicken
Cited by: 4
Author(s): Dirkjan Schokker, M.A. Smits, Johanna M.J. Rebel
Software Mentions: 1
Published: about 15 years ago

10.1186/1471-2466-13-63

Altered microRNA expression profile during epithelial wound repair in bronchial epithelial cells
Cited by: 15
Author(s): Aleksandra Szczepankiewicz, Peter M. Lackie, John W. Holloway
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.25264

Highly expressed placental miRNAs control key biological processes in human cancer cell lines
Cited by: 10
Author(s): Daniel Onofre Vidal, Anelisa Ramão, Daniel Guariz Pinheiro, Bruna Rodrigues Muys, Julio C. C. Lorenzi, Cleidson de Pádua Alves, Dalila Lucíola Zanette, Greice Andreotti de Molfetta, Geraldo Duarte, Wilson A. Silva
Software Mentions: 1
Published: over 8 years ago

10.1186/1756-0500-7-148

Comparison of alternative mixture model methods to analyze bacterial CGH experiments with multi-genome arrays
Cited by: 0
Author(s): Liliana Sofia Mendonça Cardoso, Cláudia Elvas Suissas, Mário Ramirez, Marília Antunes, Francisco Pinto
Software Mentions: 1
Published: over 12 years ago

10.1186/s12918-018-0579-5

New perspectives: systems medicine in cardiovascular disease
Cited by: 13
Author(s): Frank Krämer, Steffen Just, Tanja Zeller
Software Mentions: 1
Published: over 8 years ago

10.1186/1752-0509-9-S2-S3

KPP: KEGG Pathway Painter
Cited by: 18
Author(s): Ganiraju C. Manyam, Aybike Birerdinc, Ancha Baranova
Software Mentions: 1
Published: over 11 years ago

10.1186/1752-0509-4-86

Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems
Cited by: 7
Author(s): Michał Dąbrowski, Norbert Dojer, Małgorzata Zawadzka, Jakub Mieczkowski, Bożena Kamińska
Software Mentions: 1
Published: about 16 years ago

10.1186/1746-6148-6-44

Feasibility of a liver transcriptomics approach to assess bovine treatment with the prohormone dehydroepiandrosterone (DHEA)
Cited by: 19
Author(s): Jeroen C.W. Rijk, Ad Peijnenburg, Peter J.M. Hendriksen, Johan M. Van Hende, M.J. Groot, Michel W. F. Nielen
Software Mentions: 1
Published: over 16 years ago

10.1093/bioinformatics/btz731

Metric learning on expression data for gene function prediction
Cited by: 10
Author(s): Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.ijid.2020.03.082

Different Plasmodium falciparum clearance times in two Malian villages following artesunate monotherapy
Cited by: 16
Author(s): Aminatou Koné, Sekou Sissoko, Bakary Fofana, Cheick O. Sangare, Demba Dembele, Aboubecrine Sedhigh Haidara, Nouhoum Diallo, A. Coulibaly, Aliou Traoré, S. Touré, Kadidia Haidara, Kassim Sanogo, Issaka Sagara, Khalid B. Beshir, José Pedro Gil, Ogobara K. Doumbo, Abdoulaye Djimdé
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.1000241

Explaining the Linguistic Diversity of Sahul Using Population Models
Cited by: 60
Author(s): Ger P. Reesink, Ruth Singer, Michael Dunn
Software Mentions: 1
Published: almost 17 years ago

10.1093/bioinformatics/btx739

SATORI: a system for ontology-guided visual exploration of biomedical data repositories
Cited by: 9
Author(s): Fritz Lekschas, Nils Gehlenborg
Software Mentions: 1
Published: almost 9 years ago

10.1093/bioinformatics/btt019

CluePedia Cytoscape plugin: pathway insights using integrated experimental and <i>in silico</i> data
Cited by: 841
Author(s): Gabriela Bindea, Jérôme Galon, Bernhard Mlecnik
Software Mentions: 1
Published: over 13 years ago

10.1093/bioinformatics/btz959

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences
Cited by: 41
Author(s): Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie-Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo López, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Elixir Core Data Resource Forum, Niklas Blomberg, Christine Durinx, Johanna McEntyre
Software Mentions: 1
Published: over 6 years ago

10.1242/bio.047530

Forcing contacts between mitochondria and the endoplasmic reticulum extends lifespan in a <i>Drosophila</i> model of Alzheimer's disease
Cited by: 25
Author(s): Juan Garrido-Maraver, Samantha H. Y. Loh, L. Miguel Martins
Software Mentions: 1
Published: over 7 years ago

10.1186/s13068-019-1489-5

The genetic basis of 3-hydroxypropanoate metabolism in Cupriavidus necator H16
Cited by: 16
Author(s): Christian Arenas-López, Jessica Locker, Diego Orol, Frederik Walter, Tobias Busche, Jörn Kalinowski, Nigel P. Minton, Kármen Kovács, Klaus Winzer
Software Mentions: 1
Published: about 7 years ago

10.1186/bcr3154

Functional characterization of the 19q12 amplicon in grade III breast cancers
Cited by: 61
Author(s): Rachael Natrajan, Alan Mackay, Paul M. Wilkerson, Maryou B. Lambros, Daniel Wetterskog, Mónica Arnedos, K-K. Shiu, Felipe C. Geyer, Anita Langerød, Bas Kreike, Fabien Reyal, Hugo M. Horlings, Marc J. van de Vijver, José Palacios, Britta Weigelt, Jorge S. Reis‐Filho
Software Mentions: 1
Published: over 14 years ago

10.1186/s13058-017-0897-3

SPEN, a new player in primary cilia formation and cell migration in breast cancer
Cited by: 28
Author(s): Stéphanie Légaré, Catherine Chabot, Mark Basik
Software Mentions: 1
Published: almost 9 years ago

10.1186/bcr3048

Metastatic breast cancer cells inhibit osteoblast differentiation through the Runx2/CBFβ-dependent expression of the Wnt antagonist, sclerostin
Cited by: 89
Author(s): Daniel Mendoza-Villanueva, Leo Zeef, Paul Shore
Software Mentions: 1
Published: almost 15 years ago

10.1186/bcr2819

Prolactin-induced mouse mammary carcinomas model estrogen resistant luminal breast cancer
Cited by: 54
Author(s): Lisa M. Arendt, Debra E. Rugowski, Tara A Grafwallner-Huseth, Maria J. García-Barchino, Hallgeir Rui, Linda A. Schuler
Software Mentions: 1
Published: over 15 years ago

10.1093/bib/bbv018

Adapting bioinformatics curricula for big data
Cited by: 38
Author(s): Anna C. Greene, Kristine A. Giffin, Casey S. Greene, Jason H. Moore
Software Mentions: 1
Published: over 11 years ago

10.1093/bib/bbv013

Molecular portraits: the evolution of the concept of transcriptome-based cancer signatures
Cited by: 9
Author(s): A. Modelska, Alessandro Quattrone, Angela Re
Software Mentions: 1
Published: over 11 years ago

10.1186/s12935-020-01465-8

Clinical value and potential mechanisms of COL8A1 upregulation in breast cancer: a comprehensive analysis
Cited by: 16
Author(s): Peng Wei, Jian‐Di Li, Jingjing Zeng, Xiaoping Zou, Deng Tang, Wei Tang, Minhua Rong, Ying Liu, Wei Dai, Zhong-Qing Tang, Zhaoyong Feng, Gang Chen
Software Mentions: 1
Published: about 6 years ago

10.1186/s41199-020-0047-y

Transcriptomics and Epigenomics in head and neck cancer: available repositories and molecular signatures
Cited by: 21
Author(s): Mara Serena Serafini, Laura Lopez-Perez, Giuseppe Fico, Lisa Licitra, Loris De Cecco, Carlo Resteghini
Software Mentions: 1
Published: over 6 years ago

10.1038/srep33142

Deep sequencing reveals microbiota dysbiosis of tongue coat in patients with liver carcinoma
Cited by: 80
Author(s): Haifeng Lü, Zhigang Ren, Ang Li, Hua Zhang, Jianwen Jiang, Shaoyan Xu, Qixia Luo, Kai Zhou, Xiaoli Sun, Shusen Zheng
Software Mentions: 1
Published: almost 10 years ago

10.26508/lsa.201900494

The CCR4–NOT complex maintains liver homeostasis through mRNA deadenylation
Cited by: 15
Author(s): Akinori Takahashi, Toru Suzuki, Shou Soeda, Shohei Takaoka, Shungo Kobori, Tomokazu Yamaguchi, Haytham Mohamed Aly Mohamed, Akiko Yanagiya, Takaya Abe, Mayo Shigeta, Yasuhide Furuta, Keiji Kuba, Tadashi Yamamoto
Software Mentions: 1
Published: over 6 years ago

10.3390/md17100576

Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives
Cited by: 21
Author(s): Luca Ambrosino, Michael Tangherlini, Chiara Colantuono, Alfonso Esposito, Mara Sangiovanni, Marco Miralto, Clementina Sansone, Maria Luisa Chiusano
Software Mentions: 1
Published: almost 7 years ago

10.3390/microarrays3040322

Variation of RNA Quality and Quantity Are Major Sources of Batch Effects in Microarray Expression Data
Cited by: 10
Author(s): Mario Fasold, Hans Binder
Software Mentions: 1
Published: over 11 years ago

10.1099/mic.0.000423

Identification of new members of the Escherichia coli K-12 MG1655 SlyA regulon
Cited by: 19
Author(s): Thomas D Curran, Fatima Abacha, Stephen P Hibberd, Matthew D. Rolfe, Melissa M. Lacey, Jeffrey Green
Software Mentions: 1
Published: over 9 years ago

10.1186/2040-2392-5-21

Altered brain gene expression but not steroid biochemistry in a genetic mouse model of neurodevelopmental disorder
Cited by: 20
Author(s): Simon Trent, JP Fry, Obah A. Ojarikre, William Davies
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-6606-6-12

Synaptosomal-associated protein 25 mutation induces immaturity of the dentate granule cells of adult mice
Cited by: 51
Author(s): Koji Ohira, Katsunori Kobayashi, Keiko Toyama, Hironori Nakamura, Hirotaka Shoji, Keizo Takao, Rika Takeuchi, Shun Yamaguchi, Masakazu Kataoka, Shintaro Otsuka, Masami Takahashi, Tsuyoshi Miyakawa
Software Mentions: 1
Published: over 13 years ago

10.1111/mmi.13091

Deciphering the metabolic response of <scp> <i>M</i> </scp> <i>ycobacterium tuberculosis</i> to nitrogen stress
Cited by: 33
Author(s): Katrina Williams, Victoria A Jenkins, Geraint Barton, William A Bryant, Nitya Krishnan, Brian Robertson
Software Mentions: 1
Published: about 11 years ago

10.15252/msb.20156525

The bimodally expressed micro <scp>RNA</scp> miR‐142 gates exit from pluripotency
Cited by: 26
Author(s): Hanna L. Sladitschek, Pierre Neveu
Software Mentions: 1
Published: over 10 years ago

10.15252/msb.20199043

A gene regulatory network controls the balance between mesendoderm and ectoderm at pluripotency exit
Cited by: 16
Author(s): Hanna L. Sladitschek, Pierre Neveu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.vetpar.2015.08.023

Variable exon usage of differentially-expressed genes associated with resistance of sheep to Teladorsagia circumcincta
Cited by: 3
Author(s): Hazel Wilkie, Siyang Xu, Anton Gossner
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12957-018-1320-y

Clinical value of miR-198-5p in lung squamous cell carcinoma assessed using microarray and RT-qPCR
Cited by: 19
Author(s): Yue‐Ya Liang, Jiacheng Huang, Rongjiang Tang, Wenjie Chen, Peng Chen, Wei‐Luan Cen, Ke Shi, Gao Li, Xiang Gao, An‐Gui Liu, Xuebiao Peng, Su-Hua Huang, Ye‐Ying Fang, Yutong Gu
Software Mentions: 1
Published: over 8 years ago

10.3390/pathogens5030051

FlpS, the FNR-Like Protein of Streptococcus suis Is an Essential, Oxygen-Sensing Activator of the Arginine Deiminase System
Cited by: 10
Author(s): Jörg Willenborg, Anna Koczula, Marcus Fulde, Astrid de Greeff, Andreas Beineke, Wolfgang Eisenreich, Claudia Huber, Maren Seitz, Peter Valentin‐Weigand, Ralph Goethe
Software Mentions: 1
Published: about 10 years ago

10.3399/bjgp21X714293

Patient-centred innovation for multimorbidity care: a mixed-methods, randomised trial and qualitative study of the patients’ experience
Cited by: 6
Author(s): Moira Stewart, Martin Fortin, Judith Belle Brown, Bridget L. Ryan, Pauline Pariser, Jocelyn Charles, Thuy-Nga Pham, Pauline Boeckxstaens, Sonja M. Reichert, Guangyong Zou, Onil Bhattacharyya, Alan Katz, Helena Piccinini‐Vallis, Tara Sampalli, Sabrina T. Wong, Merrick Zwarenstein
Software Mentions: 1
Published: over 5 years ago

10.1186/1754-6834-5-71

Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog
Cited by: 80
Author(s): Timothy J. Tschaplinski, Robert F. Standaert, Nancy L. Engle, Madhavi Z. Martin, Amandeep K. Sangha, Jerry M. Parks, Jeremy C. Smith, Reichel Samuel, Nan Jiang, Yunqiao Pu, Arthur J. Ragauskas, Choo Hamilton, Chunxiang Fu, Zeng‐Yu Wang, Brian H. Davison, Richard A. Dixon, Jonathan R. Mielenz
Software Mentions: 1
Published: over 14 years ago

10.1098/rstb.2010.0286

Computational biology for ageing
Cited by: 37
Author(s): Daniela Wieser, Irene Papatheodorou, Matthias Ziehm, Janet M. Thornton
Software Mentions: 1
Published: over 15 years ago

10.1093/pcp/pcv165

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression
Cited by: 143
Author(s): Yosuke Aoki, Yasunobu Okamura, Shu Tadaka, Kengo Kinoshita, Takeshi Obayashi
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12874-017-0321-9

Practical partnered research to improve weight loss among overweight/obese veterans: lessons from the trenches
Cited by: 3
Author(s): Mona AuYoung, Laura J. Damschroder, Linda Kinsinger, Tannaz Moin, Caroline R. Richardson
Software Mentions: 1
Published: over 9 years ago

10.1186/s40795-020-00400-4

Diet quality, weight loss, and diabetes incidence in the Diabetes Prevention Program (DPP)
Cited by: 17
Author(s): Benjamin T. Allaire, Ashley H. Tjaden, Elizabeth M. Venditti, John W. Apolzan, Dana Dabelea, Linda M. Delahanty, Sharon L. Edelstein, Mary A. Hoskin, Karla A. Temple, Judith Wylie‐Rosett, Lindsay M. Jaacks
Software Mentions: 1
Published: over 5 years ago

10.1186/s12933-015-0240-1

Differential response in levels of high-density lipoprotein cholesterol to one-year metformin treatment in prediabetic patients by race/ethnicity
Cited by: 21
Author(s): Chao Zhang, Feng Gao, Hao Luo, Chun Ting Zhang, Zhen Ren
Software Mentions: 1
Published: about 11 years ago

10.3390/molecules22101607

Small Molecules Derived from Thieno[3,4-c]pyrrole-4,6-dione (TPD) and Their Use in Solution Processed Organic Solar Cells
Cited by: 25
Author(s): Cesar Garcías-Morales, Daniel Romero-Borja, José‐Luis Maldonado, Arián Espinosa-Roa, Mario Rodríguez, Juan Pablo García-Merinos, Armando Ariza‐Castolo
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13007-016-0134-6

Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries
Cited by: 168
Author(s): Atena Haghighattalab, Lorena González Pérez, Suchismita Mondal, Daljit Singh, Dale Schinstock, Jessica Rutkoski, Iván Ortiz-Monasterio, Ravi P. Singh, Douglas G. Goodin, Jesse Poland
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0021518

TCF7L2 Polymorphism, Weight Loss and Proinsulin∶Insulin Ratio in the Diabetes Prevention Program
Cited by: 26
Author(s): Jeanne M. McCaffery, Kathleen A. Jablonski, Paul W. Franks, Samuel Dagogo‐Jack, Rena R. Wing, William C. Knowler, Linda M. Delahanty, Dana Dabelea, Richard F. Hamman, Alan R. Shuldiner, José C. Florez
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0159643

RichMind: A Tool for Improved Inference from Large-Scale Neuroimaging Results
Cited by: 3
Author(s): Adi Maron‐Katz, David Amar, Eti Ben-Simon, Talma Hendler, Ron Shamir
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0206203

Cost-effectiveness of targeted thrombolytic therapy for stroke patients using multi-modal CT compared to usual practice
Cited by: 4
Author(s): Penny Reeves, Kim Edmunds, Christopher Levi, Longting Lin, Xin Cheng, Richard I. Aviv, Timothy Kleinig, Ken Butcher, Jingfen Zhang, Mark Parsons, Andrew Bivard
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0240363

Comparison of climatic factors on mosquito abundance at US Army Garrison Humphreys, Republic of Korea
Cited by: 6
Author(s): Myung-Jae Hwang, Sang Hyun Kim, Terry A. Klein, Sung-Tae Chong, Kisung Sim, Yeonseung Chung, Hae-Kwan Cheong
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pbio.0020317

Submission of Microarray Data to Public Repositories
Cited by: 113
Author(s): Catherine A. Ball, Alvis Brāzma, Helen C. Causton, Steve Chervitz, Ron Edgar, Pascal Hingamp, John C. Matese, Helen Parkinson, John Quackenbush, Martin Ringwald, Susanna Assunta Sansone, Gavin Sherlock, Paul T. Spellman, C. J. Stoeckert, Yoshio Tateno, Ron Taylor, Joseph A. White, Neil Winegarden
Software Mentions: 1
Published: almost 22 years ago

10.1371/journal.pbio.0030297

Bioinformatics and Data Management Support for Environmental Genomics
Cited by: 23
Author(s): Dawn Field, Bela Tiwari, Jason Snape
Software Mentions: 1
Published: about 21 years ago

10.1371/journal.pbio.3001311

MHC class I H2-Kb negatively regulates neural progenitor cell proliferation by inhibiting FGFR signaling
Cited by: 12
Author(s): Karin Lin, Gregor Bieri, Géraldine Gontier, Sören Müller, Lucas K. Smith, Cedric E Snethlage, Charles White, Sun Y. Maybury-Lewis, Saul Villeda
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1000851

Large-Scale Analysis of Network Bistability for Human Cancers
Cited by: 75
Author(s): Tetsuya Shiraishi, Shinako Matsuyama, Hiroaki Kitano
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pgen.1004243

The Membrane-Associated Transcription Factor NAC089 Controls ER-Stress-Induced Programmed Cell Death in Plants
Cited by: 160
Author(s): Zhenle Yang, Mei-Jing Wang, Ling Sun, Sun-Jie Lu, Dongling Bi, Li‐Zhong Sun, Ze‐Ting Song, Shuang-Shuang Zhang, Shun-Fan Zhou, Jian‐Xiang Liu
Software Mentions: 1
Published: over 12 years ago

10.3390/e23091116

Towards an Efficient and Exact Algorithm for Dynamic Dedicated Path Protection
Cited by: 2
Author(s): Ireneusz Szcześniak, Ireneusz Olszewski, Bożena Woźna-Szcześniak
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2017.01190

Deep Plant Phenomics: A Deep Learning Platform for Complex Plant Phenotyping Tasks
Cited by: 220
Author(s): Jordan Ubbens, Ian Stavness
Software Mentions: 1
Published: about 9 years ago

10.3390/genes9080394

A Model Stacking Framework for Identifying DNA Binding Proteins by Orchestrating Multi-View Features and Classifiers
Cited by: 22
Author(s): Xiujuan Liu, Xiujun Gong, Hua Yu, Jiahui Xu
Software Mentions: 1
Published: about 8 years ago

10.1111/irv.12449

Novel multiplex assay platforms to detect influenza A hemagglutinin subtype-specific antibody responses for high-throughput and in-field applications
Cited by: 10
Author(s): Zhu‐Nan Li, Jessica F. Trost, Kimberly M. Weber, Elizabeth LeMasters, Sharifa Nasreen, Javan Esfandiari, Angelo Gunasekera, Megan McCausland, Katharine Sturm‐Ramirez, Jens Wrammert, Sean M. Gregory, Vic Veguilla, James Stevens, Joseph D. Miller, Jacqueline M. Katz, Min Z. Levine
Software Mentions: 1
Published: over 9 years ago

10.3390/s18020582

Structured Kernel Subspace Learning for Autonomous Robot Navigation
Cited by: 3
Author(s): Eunwoo Kim, Sungjoon Choi, Songhwai Oh
Software Mentions: 1
Published: over 8 years ago

10.3390/s21155199

Achieving Low Latency Communications in Smart Industrial Networks with Programmable Data Planes
Cited by: 11
Author(s): Asier Atutxa, David Franco, Jorge Sasiain, Jasone Astorga, Eduardo Jacob
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.1000470

SWI/SNF Associates with Nascent Pre-mRNPs and Regulates Alternative Pre-mRNA Processing
Cited by: 75
Author(s): Anu Tyagi, Jessica Ryme, David Brodin, A K Ostlund Farrants, Neus Visa
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pgen.1002398

Widespread Cotranslational Formation of Protein Complexes
Cited by: 104
Author(s): Caia D. S. Duncan, Juan Mata
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1007256

Broken replication forks trigger heritable DNA breaks in the terminus of a circular chromosome
Cited by: 35
Author(s): Anurag Kumar Sinha, Christophe Possoz, Adeline Durand, Jean-Michel Desfontaines, François‐Xavier Barre, David R. F. Leach, Bertrand Michel
Software Mentions: 1
Published: over 8 years ago

10.1186/s13148-019-0802-2

KMT2C/D COMPASS complex-associated diseases [KCDCOM-ADs]: an emerging class of congenital regulopathies
Cited by: 45
Author(s): William J. Lavery, Artem Barski, Susan Wiley, Elizabeth K. Schorry, Andrew Lindsley
Software Mentions: 1
Published: over 6 years ago

10.3390/biomedicines6030080

GABA Levels in Left and Right Sensorimotor Cortex Correlate across Individuals
Cited by: 10
Author(s): Nicolaas A.J. Puts, Stefanie Heba, Ashley D. Harris, John Evans, David J. McGonigle, Martin Tegenthoff, Tobias Schmidt‐Wilcke, Richard A.E. Edden
Software Mentions: 1
Published: about 8 years ago

10.1186/1745-6215-15-259

Mothers After Gestational Diabetes in Australia Diabetes Prevention Program (MAGDA-DPP) post-natal intervention: an update to the study protocol for a randomized controlled trial
Cited by: 21
Author(s): Sophy Shih, Nathalie Davis-Lameloise, Edward Janus, Carol Wildey, Vincent L. Versace, Virginia Hagger, Dino Asproloupos, Paddy A. Phillips, Michael Ackland, Timothy Skinner, Jeremy Oats, Rob Carter, James D. Best, James Dunbar
Software Mentions: 1
Published: about 12 years ago

10.1186/s12966-021-01134-7

The theoretical basis of a nationally implemented type 2 diabetes prevention programme: how is the programme expected to produce changes in behaviour?
Cited by: 16
Author(s): Rhiannon E Hawkes, Lisa Miles, David P. French
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph7083150

Economic Evaluation of Lifestyle Interventions for Preventing Diabetes and Cardiovascular Diseases
Cited by: 102
Author(s): Sanjib Saha, Ulf G. Gerdtham, Pia Johansson
Software Mentions: 1
Published: about 16 years ago

10.2196/mhealth.2164

Health-E-Call, a Smartphone-Assisted Behavioral Obesity Treatment: Pilot Study
Cited by: 58
Author(s): Thomas Jg, RR Wing
Software Mentions: 1
Published: over 13 years ago

10.1107/S1600577515013776

High-rate dead-time corrections in a general purpose digital pulse processing system
Cited by: 35
Author(s): L. Abbene, G. Gerardi
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pmed.1000046

A Compendium of Potential Biomarkers of Pancreatic Cancer
Cited by: 256
Author(s): H. C. Harsha, Kumaran Kandasamy, Prathibha Ranganathan, Sandhya Rani, Subhashri Ramabadran, Sashikanth Gollapudi, Lavanya Balakrishnan, Sutopa B. Dwivedi, Deepthi Telikicherla, Lakshmi Dhevi N. Selvan, Renu Goel, Suresh Mathivanan, Arivusudar Marimuthu, Manoj Kumar Kashyap, Robert F. Vizza, Robert J. Mayer, James A. DeCaprio, Sudhir Srivastava, Samir Hanash, Ralph H. Hruban, Akhilesh Pandey
Software Mentions: 1
Published: over 17 years ago

10.1128/mSphere.00443-21

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility
Cited by: 9
Author(s): Anand V. Sastry, Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin, Adam M. Feist, Victor Nizet, Jaehyung Kim
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0017259

GTI: A Novel Algorithm for Identifying Outlier Gene Expression Profiles from Integrated Microarray Datasets
Cited by: 27
Author(s): John Patrick Mpindi, Henri Sara, Saija Haapa-Paananen, Sami Kilpinen, Tommi Pisto, Elmar Bucher, K. Ojala, Kristiina Iljin, Paula Vainio, Mari Björkman, Santosh Gupta, Pekka Kohonen, Matthias Nees, Olli Kallioniemi
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0177278

The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Cited by: 23
Author(s): Bart Verwaaijen, Daniel Wibberg, Magdalena Kröber, Anderson M. Winkler, Rita Zrenner, Hanna Bednarz, Karsten Niehaus, Rita Grosch, Alfred Pühler, Andreas Schlüter
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0062456

Age-Mediated Transcriptomic Changes in Adult Mouse Substantia Nigra
Cited by: 12
Author(s): Lin Gao, María Hidalgo-Figueroa, Luis Escudero, Juan Díaz‐Martín, José López‐Barneo, Alberto Pascual
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008939

The Transcriptional Programme of Human Heart Valves Reveals the Natural History of Infective Endocarditis
Cited by: 29
Author(s): Marie Benoit, Franck Thuny, Yannick Le Priol, Hubert Lépidi, Sonia Bastonero, Jean‐Paul Casalta, Frédéric Collart, Christian Capo, Didier Raoult, Jean‐Louis Mège
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0109978

Life without Oxygen: Gene Regulatory Responses of the Crucian Carp (Carassius carassius) Heart Subjected to Chronic Anoxia
Cited by: 11
Author(s): Kåre‐Olav Stensløkken, Stian Ellefsen, Olga Vasieva, Yongxiang Fang, Anthony P. Farrell, Lisa Olohan, Jarle Vaage, Göran Nilsson, Andrew R. Cossins
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0181231

CSmiRTar: Condition-Specific microRNA targets database
Cited by: 20
Author(s): Wei Wu, Bor Wen Tu, Tsung Te Chen, Shang Wei Hou, Joseph T. Tseng
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0089318

Global Meta-Analysis of Transcriptomics Studies
Cited by: 11
Author(s): José Caldas, Susana Vinga
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0084428

DACH1: Its Role as a Classifier of Long Term Good Prognosis in Luminal Breast Cancer
Cited by: 24
Author(s): Desmond G. Powe, Gopal Krishna Dhondalay, Christophe Lemetre, Tony Allen, Hany Onsy Habashy, Ian O. Ellis, Robert C. Rees, Graham Ball
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0006576

Genome-Scale Identification Method Applied to Find Cryptic Aminoglycoside Resistance Genes in Pseudomonas aeruginosa
Cited by: 17
Author(s): Julie M. Struble, Ryan T. Gill
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0218934

Ticagrelor induces paraoxonase-1 (PON1) and better protects hypercholesterolemic mice against atherosclerosis compared to clopidogrel
Cited by: 10
Author(s): Hasseri Halim, Decha Pinkaew, Preedakorn Chunhacha, Patuma Sinthujaroen, Perumal Thiagarajan, Kenichi Fujise
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0053391

Characterization of the Humoral Immune Response during Staphylococcus aureus Bacteremia and Global Gene Expression by Staphylococcus aureus in Human Blood
Cited by: 69
Author(s): P. Martijn den Reijer, Nicole Lemmens-den Toom, Samantha Kant, Susan V. Snijders, Hélène Boelens, Mehri Tavakol, Nelianne J. Verkaik, Alex van Belkum, Henri A. Verbrugh, Willem J. B. van Wamel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008408

Expression Profiling the Temperature-Dependent Amphibian Response to Infection by Batrachochytrium dendrobatidis
Cited by: 144
Author(s): Laia Ribas, Mingshi Li, Benjamin J. Doddington, Jacques Robert, Judith A. Seidel, J. Simon Kroll, Lyle B. Zimmerman, Nicholas C Grassly, Trenton W. J. Garner, Matthew C. Fisher
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0009748

Cardiac Deletion of Smyd2 Is Dispensable for Mouse Heart Development
Cited by: 68
Author(s): Florian Diehl, Mark A. Brown, Machteld J. van Amerongen, Tatyana Novoyatleva, Astrid Wietelmann, June V. Harriss, Fulvia Ferrazzi, Thomas Boettger, Richard P. Harvey, Philip W. Tucker, Felix B. Engel
Software Mentions: 1
Published: over 16 years ago