10.1186/s12866-018-1274-9

The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection
Cited by: 18
Author(s): Yusuke Fukui, Kotaro Aoki, Yoshikazu Ishii, Kazuhiro Tateda
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2369-15-106

SYNbiotics Easing Renal failure by improving Gut microbiologY (SYNERGY): a protocol of placebo-controlled randomised cross-over trial
Cited by: 43
Author(s): Megan Rossi, David W. Johnson, Mark Morrison, Elaine M. Pascoe, Jeff S. Coombes, Josephine M. Forbes, Brett McWhinney, Jacobus P.J. Ungerer, Goce Dimeski, Katrina L. Campbell
Software Mentions: 1
Published: about 12 years ago

10.1186/2043-9113-5-S1-S6

The Integrated Data Repository Toolkit (IDRT): accelerating translational research infrastructures
Cited by: 5
Author(s): Christian R. Bauer, Thomas Ganslandt, Benjamin Baum, Jan Christoph, Igor Engel, Matthias Löbe, Sebastian Mate, Hans‐Ulrich Prokosch, Ulrich Sax, Sebastian Stäubert, Alfred Winter
Software Mentions: 1
Published: over 11 years ago

10.1186/s12903-019-0956-5

The human oral cavity microbiota composition during acute tonsillitis: a cross-sectional survey
Cited by: 17
Author(s): Yun Kit Yeoh, Man Hin Chan, Zigui Chen, Eddy W. H. Lam, Pak-Kin Wong, Chi Man Ngai, Paul K.S. Chan, Michael K. Hui
Software Mentions: 1
Published: over 6 years ago

10.1186/s12903-019-0906-2

Composition and diversity of the subgingival microbiome and its relationship with age in postmenopausal women: an epidemiologic investigation
Cited by: 15
Author(s): Michael J. LaMonte, Robert J. Genco, Michael Buck, Daniel McSkimming, Lü Li, Kathleen M. Hovey, Chris Andrews, Wei Zheng, Yijun Sun, Amy E. Millen, Maria Tsompana, Hailey R. Banack, Jean Wactawski‐Wende
Software Mentions: 1
Published: almost 7 years ago

10.3390/jcm9030625

A New Risk Variant for Multiple Sclerosis at 11q23.3 Locus Is Associated with Expansion of CXCR5+ Circulating Regulatory T Cells
Cited by: 5
Author(s): Elia Gil‐Varea, Marı́a Fedetz, Herena Eixarch, Nino Spataro, Luisa María Villar, Elena Urcelay, Albert Sáiz, Óscar Fernández, Laura Leyva, Lluı́s Ramió-Torrentà, Koen Vandenbroeck, David Otaegui, Tamara Castillo-Triviño, Guillermo Izquierdo, Sunny Malhotra, Elena Bosch, Arcadi Navarro, Antonio Alcina, Xavier Montalbán, Fuencisla Matesanz, Manuel Comabella
Software Mentions: 1
Published: over 6 years ago

10.1093/jxb/erw015

Natural variation in rosette size under salt stress conditions corresponds to developmental differences between Arabidopsis accessions and allelic variation in the<i>LRR-KISS</i>gene
Cited by: 57
Author(s): Magdalena Julkowska, Karlijn Klei, Like Fokkens, Michel A. Haring, M. Eric Schranz, Christa Testerink
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erw463

Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data
Cited by: 23
Author(s): Alisandra K. Denton, Janina Maß, Canan Külahoglu, Martin J. Lercher, Andrea Bräutigam, Andreas P.M. Weber
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/ery076

BIFURCATE FLOWER TRUSS: a novel locus controlling inflorescence branching in tomato contains a defective MAP kinase gene
Cited by: 3
Author(s): Demetryus Silva Ferreira, Zoltán Kevei, Tomasz J. Kurowski, Maria Esther de Noronha Fonseca, Fady Mohareb, L. S. Boiteux, Andrew J. Thompson
Software Mentions: 1
Published: over 8 years ago

10.1186/s12903-021-01529-9

Removable denture is a risk indicator for peri-implantitis and facilitates expansion of specific periodontopathogens: a cross-sectional study
Cited by: 8
Author(s): Jasmin Grischke, Szymon P. Szafrański, Uthayakumar Muthukumarasamy, Susanne Haeussler, Meike Stiesch
Software Mentions: 1
Published: over 5 years ago

10.1093/jxb/erab238

Sphingolipid Δ4-desaturation is an important metabolic step for glycosylceramide formation in Physcomitrium patens
Cited by: 3
Author(s): Jasmin Gömann, Cornelia Herrfurth, Krzysztof Zienkiewicz, Tegan M. Haslam, Ivo Feußner
Software Mentions: 1
Published: about 5 years ago

10.1186/s12887-019-1502-y

MAMI: a birth cohort focused on maternal-infant microbiota during early life
Cited by: 24
Author(s): Izaskun García-Mantrana, Cristina Alcántara, Marta Selma‐Royo, Alba Boix-Amorós, Majda Dzidic, José V. Gimeno-Alcañíz, Isabel Úbeda-Sansano, Ignacio Sorribes-Monrabal, Ramón Escuriet, Fernando Gil-Raga, Anna Parra-Llorca, Cécilia Martínez-Costa, María Carmen Collado
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1001046

Kaposin-B Enhances the PROX1 mRNA Stability during Lymphatic Reprogramming of Vascular Endothelial Cells by Kaposi's Sarcoma Herpes Virus
Cited by: 57
Author(s): Jae Gyu Yoo, Jeehoon Kang, Ha Neul Lee, Berenice Aguilar, Kafka Darren, Sun-Ju Lee, Inho Choi, Juneyong Lee, Swapnika Ramu, Juergen Haas, Chester J. Koh, Young Kwon Hong
Software Mentions: 1
Published: about 16 years ago

10.1186/s12887-020-02433-x

Breastfeeding restored the gut microbiota in caesarean section infants and lowered the infection risk in early life
Cited by: 16
Author(s): Gregory Yin Ming Cheng, Qian Zhou, Muxia Li, Zhou LeTian, Lei Xu, Ying Zhang, Dongfang Li, Ye Wang, Wenkui Dai, Shuai Cheng Li, Lin Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12887-017-0805-0

Assessment of complementary feeding of Canadian infants: effects on microbiome &amp; oxidative stress, a randomized controlled trial
Cited by: 40
Author(s): Wafaa Qasem, Meghan B. Azad, Zakir Hossain, Elnaz Azad, Sarah Jorgensen, Sandra Castillo San Juan, Chenxi Cai, Ehsan Khafipour, Trust Beta, L. Jackson Roberts, James K. Friel
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1003066

TgCDPK3 Regulates Calcium-Dependent Egress of Toxoplasma gondii from Host Cells
Cited by: 126
Author(s): John J. McCoy, Lachlan Whitehead, Giel G. van Dooren, Christopher J. Tonkin
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003475

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites
Cited by: 390
Author(s): Philipp Wiemann, Christian M. K. Sieber, Katharina Walburga von Bargen, Lena Studt, Eva Maria Niehaus, José J. Espino, Kathleen Huß, Caroline B. Michielse, Sabine Albermann, Dominik Wagner, Sonja Verena Bergner, Lanelle Connolly, Andreas Fischer, Günter Reuter, Karin Kleigrewe, Till Bald, Brenda D. Wingfield, Ron Ophir, Stanley Freeman, Michael Hippler, Kristina M. Smith, Daren W. Brown, Robert H. Proctor, Martin Münsterkötter, Michael Freitag, Hans‐Ulrich Humpf, Ulrich Güldener, Bettina Tudzynski
Software Mentions: 1
Published: about 13 years ago

10.1186/s12870-016-0767-7

Shifts in plant foliar and floral metabolomes in response to the suppression of the associated microbiota
Cited by: 38
Author(s): Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Alex Guenther, Joan Llusià, Laura Rico, Jaume Terradas, Gerard Farré‐Armengol, Iolanda Filella, Teodor Parella, Josep Peñuelas
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-019-1661-x

Salt stress vs. salt shock - the case of sugar beet and its halophytic ancestor
Cited by: 49
Author(s): Monika Skorupa, Jacek Kęsy, Katarzyna Kurnik, Janusz Niedojadło, Jacek Kęsy, Krzysztof Klamkowski, Katarzyna Wójcik, W. Treder, Andrzej Tretyn, Jarosław Tyburski
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1005031

Epstein-Barr Virus Proteins EBNA3A and EBNA3C Together Induce Expression of the Oncogenic MicroRNA Cluster miR-221/miR-222 and Ablate Expression of Its Target p57KIP2
Cited by: 34
Author(s): Quentin Bazot, Kostas Paschos, Lenka Skalska, Jens Kalchschmidt, Gillian A. Parker, Martin J. Allday
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005383

EBNA3C Directs Recruitment of RBPJ (CBF1) to Chromatin during the Process of Gene Repression in EBV Infected B Cells
Cited by: 22
Author(s): Jens Kalchschmidt, Adam C. T. Gillman, Kostas Paschos, Quentin Bazot, Bettina Kempkes, Martin J. Allday
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1006820

Activation of PI3K, Akt, and ERK during early rotavirus infection leads to V-ATPase-dependent endosomal acidification required for uncoating
Cited by: 39
Author(s): Mahmoud Soliman, Ja-Young Seo, Deok-Song Kim, Jiyun Kim, Jun-Gyu Park, Mia Madel Alfajaro, Yeong-Bin Baek, Eun-Hyo Cho, Joseph Kwon, Jong‐Soon Choi, Mun-Il Kang, Sang-Ik Park, Kyoung-Oh Cho
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006919

Addition of m6A to SV40 late mRNAs enhances viral structural gene expression and replication
Cited by: 108
Author(s): Kevin Tsai, David Courtney, Bryan R. Cullen
Software Mentions: 1
Published: over 8 years ago

10.1186/s13104-017-2960-7

Doxycycline induces dysbiosis in female C57BL/6NCrl mice
Cited by: 27
Author(s): Felicia D. Duke Boynton, Aaron C. Ericsson, Mayu Uchihashi, Misha Dunbar, John E. Wilkinson
Software Mentions: 1
Published: over 8 years ago

10.1186/s12917-020-02295-6

The equine gastrointestinal microbiome: impacts of weight-loss
Cited by: 19
Author(s): Philippa K. Morrison, C. J. Newbold, Eleanor Jones, Hilary J. Worgan, Dai Grove‐White, Alex Dugdale, Clare Barfoot, Patricia A. Harris, Caroline McG. Argo
Software Mentions: 1
Published: over 6 years ago

10.1155/2007/26839

Comprehensive Analysis of PPAR<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="E1"><mml:mi>α</mml:mi></mml:math>-Dependent Regulation of Hepatic Lipid Metabolism by Expression Profiling
Cited by: 185
Author(s): Maryam Rakhshandehroo, Linda M. Sanderson, Merja Matilainen, Rinke Stienstra, Carsten Carlberg, Philip J. de Groot, Michael Müller, Sander Kersten
Software Mentions: 1
Published: over 19 years ago

10.1186/s12917-020-02670-3

Effect of sterilization on the canine vaginal microbiota: a pilot study
Cited by: 5
Author(s): Ada Rota, Michela Corrò, Ilaria Patuzzi, Chiara Milani, Stefania Masia, Eleonora Mastrorilli, Sara Petrin, Alessandra Longo, Angela Del Carro, Carmen Losasso
Software Mentions: 1
Published: almost 6 years ago

10.1186/1746-6148-9-258

Multivariate evaluation of the effectiveness of treatment efficacy of cypermethrin against sea lice (Lepeophtheirus salmonis) in Atlantic salmon (Salmo salar)
Cited by: 10
Author(s): Daniel Ferrer Jiménez, Crawford W. Revie, Simon P. Hardy, P. A. Jansen, G. Gettinby
Software Mentions: 1
Published: over 13 years ago

10.1073/pnas.1909973116

An inhibitor of complement C5 provides structural insights into activation
Cited by: 23
Author(s): Martin Parnov Reichhardt, Steven Johnson, Terence Tang, Thomas J. Morgan, Nchimunya N. Tebeka, Niko Popitsch, Justin C. Deme, Matthijs M. Jore, Susan M. Lea
Software Mentions: 1
Published: over 6 years ago

10.1186/s12917-017-1073-9

A diet change from dry food to beef induces reversible changes on the faecal microbiota in healthy, adult client-owned dogs
Cited by: 55
Author(s): Kristin Marie Valand Herstad, Karina Gajardo, Anne Marie Bakke, Lars Moe, Jane Ludvigsen, Knut Rudi, Ida Rud, Monika Sekelja, Ellen Skancke
Software Mentions: 1
Published: about 9 years ago

10.3390/proteomes5030014

Comparison between Proteome and Transcriptome Response in Potato (Solanum tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection
Cited by: 32
Author(s): Tjaša Stare, Katja Stare, Wolfram Weckwerth, Stefanie Wienkoop, Kristina Gruden
Software Mentions: 1
Published: about 9 years ago

10.1098/rsos.191976

On the relations of phase separation and Hi-C maps to epigenetics
Cited by: 16
Author(s): Prim B. Singh, Andrew G. Newman
Software Mentions: 1
Published: over 6 years ago

10.1186/1477-7827-12-76

Androgenic regulation of beta-defensins in the mouse epididymis
Cited by: 30
Author(s): Shuang Gang Hu, Man Zou, Guang Xin Yao, Bin Wu, Qin Zhu, Xiang Qi Li, Zi‐Jiang Chen, Yun Sun
Software Mentions: 1
Published: about 12 years ago

10.1186/s12917-020-02437-w

Saccharomyces cerevisiae fermentation products (SCFP) stabilize the ruminal microbiota of lactating dairy cows during periods of a depressed rumen pH
Cited by: 19
Author(s): Hein Min Tun, Shucong Li, I. Yoon, S. J. Meale, Paula Azevedo, Ehsan Khafipour, J.C. Plaizier
Software Mentions: 1
Published: about 6 years ago

10.1186/s12931-016-0493-6

Gene profile of fibroblasts identify relation of CCL8 with idiopathic pulmonary fibrosis
Cited by: 33
Author(s): Jong-Uk Lee, Hyun Sub Cheong, Eun-Hee Shim, Da-Jeong Bae, Hun Soo Chang, Soo‐Taek Uh, Young Hoon Kim, Jong‐Sook Park, Bora Lee, Hyoung Doo Shin, Choon-Sik Park
Software Mentions: 1
Published: over 9 years ago

10.1186/s12917-020-02477-2

The gut bacterial diversity of sheep associated with different breeds in Qinghai province
Cited by: 20
Author(s): Jianjun Chang, Xiaoting Yao, Chenxiang Zuo, Yuxu Qi, Dekun Chen, Wentao Ma
Software Mentions: 1
Published: about 6 years ago

10.1186/1742-4690-10-156

Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins
Cited by: 24
Author(s): Nataša Lindič, Maruška Budič, Toni Petan, Binyamin A. Knisbacher, Erez Y. Levanon, Nika Lovšin
Software Mentions: 1
Published: over 12 years ago

10.1186/s12977-016-0277-6

Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes
Cited by: 36
Author(s): Wei Shao, Jigui Shan, Mary F. Kearney, Xiaolin Wu, Frank Maldarelli, John W. Mellors, Brian T. Luke, John M. Coffin, Stephen H. Hughes
Software Mentions: 1
Published: about 10 years ago

10.1186/s13040-018-0187-3

Knomics-Biota - a system for exploratory analysis of human gut microbiota data
Cited by: 27
Author(s): Daria Efimova, Alexander Tyakht, Anna Popenko, Anatoly Vasilyev, Ilya Altukhov, Nikita V. Dovidchenko, Vera Odintsova, Natalia Klimenko, Robert Loshkarev, Maria Pashkova, A. N. Elizarova, Viktoriya Voroshilova, Sergei Slavskii, Yury Pekov, É. D. Filippova, Tatiana I. Shashkova, E.V. Levin, Dmitry Alexeev
Software Mentions: 1
Published: almost 8 years ago

10.3897/BDJ.7.e37968

Fauna of nocturnal moth species collected in a semi-natural grassland at Kanpu-zan in northern Japan
Cited by: 1
Author(s): Masaru Kamikura, Yuzu Sakata
Software Mentions: 1
Published: about 7 years ago

10.3897/BDJ.4.e8233

Environmental variability and heavy metal concentrations from five lagoons in the Ionian Sea (Amvrakikos Gulf, W Greece)
Cited by: 5
Author(s): Katerina Vasileiadou, Christina Pavloudi, Ioanna Kalantzi, Eugenia T. Apostolaki, Georgios Chatzigeorgiou, Eva Chatzinikolaou, Evangelos Pafilis, Nikos Papageorgiou, Lucia Fanini, Spyridon Konstas, Nina Fragopoulou, Christos Arvanitidis
Software Mentions: 1
Published: almost 10 years ago

10.3897/BDJ.9.e54843

The effect of edaphic factors on the distribution and abundance of ants (Hymenoptera: Formicidae) in Iran
Cited by: 2
Author(s): Mohammad Réza Mohseni, Shahrokh Pashaei Rad
Software Mentions: 1
Published: over 5 years ago

10.1016/j.schres.2016.11.034

Novel brain expressed RNA identified at the MIR137 schizophrenia-associated locus
Cited by: 12
Author(s): Olympia Gianfrancesco, Alix Warburton, David A. Collier, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: about 9 years ago

10.1016/j.schres.2018.02.036

Regulatory characterisation of the schizophrenia-associated CACNA1C proximal promoter and the potential role for the transcription factor EZH2 in schizophrenia aetiology
Cited by: 21
Author(s): Kimberley Billingsley, Maurizio Manca, Olympia Gianfrancesco, David A. Collier, Helen Sharp, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: almost 8 years ago

10.1007/s11434-015-0905-x

Transposable elements at the center of the crossroads between embryogenesis, embryonic stem cells, reprogramming, and long non-coding RNAs
Cited by: 48
Author(s): Andrew P. Hutchins, Duanqing Pei
Software Mentions: 1
Published: almost 11 years ago

10.1007/s10530-017-1634-7

Historical ecology of a biological invasion: the interplay of eutrophication and pollution determines time lags in establishment and detection
Cited by: 39
Author(s): Paolo G. Albano, Ivo Gallmetzer, Alexandra Haselmair, Adam Tomášových, Michael Stachowitsch, Martin Zuschin
Software Mentions: 1
Published: over 8 years ago

10.1242/bio.045591

High levels of floridoside at high salinity link osmoadaptation with bleaching susceptibility in the cnidarian-algal endosymbiosis
Cited by: 17
Author(s): Hagen M. Gegner, Nils Rädecker, Michael A. Ochsenkühn, Marcelle Muniz Barreto, Maren Ziegler, Jessica Reichert, Patrick Schubert, Thomas Wilke, Christian R. Voolstra
Software Mentions: 1
Published: over 6 years ago

10.1242/bio.045252

First data on microflora of loggerhead sea turtle (<i>Caretta caretta)</i> nests from the coastlines of Sicily (Italy)
Cited by: 10
Author(s): Delia Gambino, Maria Flaminia Persichetti, Antonino Gentile, Marco Arculeo, Giulia Visconti, V. Currò, Giulia Caracappa, Daniela Crucitti, Antonio Piazza, Francesca Mancianti, Simona Nardoni, Domenico Vicari, S. Caracappà
Software Mentions: 1
Published: over 6 years ago

10.1038/s41597-021-00878-y

AI-assisted tracking of worldwide non-pharmaceutical interventions for COVID-19
Cited by: 25
Author(s): Parthasarathy Suryanarayanan, Ching-Huei Tsou, Ananya Poddar, Diwakar Mahajan, Bharath Dandala, Piyush Madan, Anshul Agrawal, Charles Wachira, Osebe Mogaka Samuel, Osnat Bar-Shira, Clifton Kipchirchir, Sharon Okwako, William Ogallo, Fred Otieno, Timothy Nyota, Fiona Matu, Vesna Barros, Daniel Shats, Oren Kagan, Sekou L. Remy, Oliver Bent, Pooja Guhan, Shilpa Mahatma, Aisha Walcott-Bryant, Divya Pathak, Michal Rosen-Zvi
Software Mentions: 1
Published: over 5 years ago

10.1242/bio.013409

Changes in cell shape are correlated with metastatic potential in murine and human osteosarcomas
Cited by: 60
Author(s): Samanthe M. Lyons, Elaheh Alizadeh, Joshua Mannheimer, Katherine Schuamberg, Jordan Castle, Bryce Schroder, Philip Turk, Douglas H. Thamm, Ashok Prasad
Software Mentions: 1
Published: over 10 years ago

10.1242/bio.201411288

Differences in the fatty-acid composition of rodent spermatozoa are associated to levels of sperm competition
Cited by: 19
Author(s): Javier delBarco‐Trillo, Rafael Mateo, Eduardo R. S. Roldán
Software Mentions: 1
Published: over 11 years ago

10.1038/srep10247

Evaluating information content of SNPs for sample-tagging in re-sequencing projects
Cited by: 20
Author(s): Hao Hu, Xiang Liu, Wenfei Jin, Hans‐Hilger Ropers, Thomas F. Wienker
Software Mentions: 1
Published: over 11 years ago

10.1186/s12575-020-00131-7

Nasopharyngeal Microbiota Profiling of SARS-CoV-2 Infected Patients
Cited by: 68
Author(s): Flavio De Maio, Brunella Posteraro, Francesca Romana Ponziani, Paola Cattani, Antonio Gasbarrini, Maurizio Sanguinetti
Software Mentions: 1
Published: about 6 years ago

10.1038/srep09930

miR-148a is Associated with Obesity and Modulates Adipocyte Differentiation of Mesenchymal Stem Cells through Wnt Signaling
Cited by: 134
Author(s): Chunmei Shi, Min Zhang, Meiling Tong, Lei Yang, Lei Pang, Ling Chen, Gao Xu, Xia Chi, Hong Qin, Yuhui Ni, Chenbo Ji, Xirong Guo
Software Mentions: 1
Published: over 11 years ago

10.1186/s13293-020-00346-z

Analysis of sex differences in dietary copper-fructose interaction-induced alterations of gut microbial activity in relation to hepatic steatosis
Cited by: 5
Author(s): Ming Song, Fang Yuan, Xiaohong Li, Xipeng Ma, Xinmin Yin, Eric C. Rouchka, Xiang Zhang, Zhongbin Deng, Russell A. Prough, Craig J. McClain
Software Mentions: 1
Published: over 5 years ago

10.1038/srep10423

Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology
Cited by: 137
Author(s): Victor D. Martínez, Emily A. Vucic, Kelsie L. Thu, Roland Hubaux, Katey S.S. Enfield, Larissa A. Pikor, Daiana D. Becker‐Santos, Carolyn J. Brown, Stephen Lam, Wan L. Lam
Software Mentions: 1
Published: about 11 years ago

10.3390/biology10060457

Parasites, Drugs and Captivity: Blastocystis-Microbiome Associations in Captive Water Voles
Cited by: 5
Author(s): Emma L. Betts, Sumaiya Hoque, Lucy Torbe, J. R. Bailey, Hazel Ryan, Karen Toller, Vicki Breakell, Angus I. Carpenter, Alex Diana, Eleni Matechou, Eleni Gentekaki, Anastasios D. Tsaousis
Software Mentions: 1
Published: over 5 years ago

10.3390/biology9120420

Endophytic Fungi as Potential Biological Control Agents against Grapevine Trunk Diseases in Alentejo Region
Cited by: 22
Author(s): Angela Billar de Almeida, Jonathan Concas, Maria Doroteia Campos, Patrick Materatski, Carla Varanda, Mariana Patanita, Sergio Murolo, Gianfranco Romanazzi, Maria do Rosário Félix
Software Mentions: 1
Published: over 5 years ago

10.1038/srep15215

Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell
Cited by: 52
Author(s): Ying Lin, Qiong Zhang, Hongmei Zhang, Wei Liu, Chun–Jen Liu, Qiubai Li, An‐Yuan Guo
Software Mentions: 1
Published: almost 11 years ago

10.3390/biology10090905

Vairimorpha (Nosema) ceranae Infection Alters Honey Bee Microbiota Composition and Sustains the Survival of Adult Honey Bees
Cited by: 9
Author(s): Yakun Zhang, Meiling Su, Long Wang, Shaokang Huang, Songkun Su, Wei‐Fone Huang
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep16432

Protein receptor-independent plasma membrane remodeling by HAMLET: a tumoricidal protein-lipid complex
Cited by: 22
Author(s): Aftab Nadeem, Jeremy Sanborn, Douglas L. Gettel, Ho C S James, Anna Rydström, Viviane N. Ngassam, Thomas Kjær Klausen, Stine Falsig Pedersen, Matti Lam, Atul N. Parikh, Catharina Svanborg
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep19531

Panel-based NGS Reveals Novel Pathogenic Mutations in Autosomal Recessive Retinitis Pigmentosa
Cited by: 46
Author(s): Raquel Pérez-Carro, Marta Cortón, Iker Sánchez‐Navarro, Olga Zurita, Noelia Sanchez-Bolivar, Rocío Sánchez-Alcudia, Stefan H. Lelieveld, Elena Aller, Miguel Ángel López-Martínez, Ma Isabel López-Molina, Patrícia José, Fiona Blanco‐Kelly, Rosa Riveiro-Álvarez, Christian Gilissen, José María Millán, Almudena Ávila-Fernández, Carmen Ayuso
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20179

SMARCAD1 is an ATP-dependent stimulator of nucleosomal H2A acetylation via CBP, resulting in transcriptional regulation
Cited by: 24
Author(s): Masamichi Doiguchi, Takeya Nakagawa, Yuko Imamura, Mitsuhiro Yoneda, Miki Higashi, Kazuishi Kubota, Satoshi Yamashita, Hiroshi Asahara, Midori Iida, Satoshi Fujii, Tsuyoshi Ikura, Ziying Liu, Tulip Nandu, W. Lee Kraus, Hitoshi Ueda, Takashi Ito
Software Mentions: 1
Published: over 10 years ago

10.1155/2015/981829

Bacterial Diversity and Bioremediation Potential of the Highly Contaminated Marine Sediments at El-Max District (Egypt, Mediterranean Sea)
Cited by: 13
Author(s): Ranya Amer, Francesca Mapelli, Hamada M. El Gendi, Marta Barbato, Doaa A. Goda, A. Corsini, L. Cavalca, Marco Fusi, Sara Borin, Daniele Daffonchio, Yasser R. Abdel-Fattah
Software Mentions: 1
Published: over 11 years ago

10.1038/srep21579

Human Vascular Microphysiological System for in vitro Drug Screening
Cited by: 72
Author(s): Cristina E. Fernández, Ringo Yen, Samantha M. Perez, Hillary W. Bedell, Thomas J. Povsic, William M. Reichert, George A. Truskey
Software Mentions: 1
Published: over 10 years ago

10.1155/2013/491091

Plant Growth Promotion Potential Is Equally Represented in Diverse Grapevine Root-Associated Bacterial Communities from Different Biopedoclimatic Environments
Cited by: 40
Author(s): Ramona Marasco, Eleonora Rolli, Marco Fusi, Ameur Chérif, A.F. Abou-Hadid, Usama El-Bahairy, Sara Borin, C. Sorlini, Daniele Daffonchio
Software Mentions: 1
Published: over 13 years ago

10.1155/2021/5554991

Roux-en-Y Gastric Bypass Improved Insulin Resistance via Alteration of the Human Gut Microbiome and Alleviation of Endotoxemia
Cited by: 4
Author(s): Qiankun Shi, Qian Wang, Hui Zhong, Dehai Li, Shuxing Yu, Hengwen Yang, Cunchuan Wang, Zhinan Yin
Software Mentions: 1
Published: about 5 years ago

10.1038/srep27680

Comparative transcriptomic analysis of human and Drosophila extracellular vesicles
Cited by: 41
Author(s): Fabio Alexis Lefebvre, Louis Philip Benoit Bouvrette, Lilyanne Perras, Alexis Blanchet-Cohen, Delphine Garnier, Janusz Rak, Éric Lécuyer
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32713

ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis
Cited by: 45
Author(s): Amit Gupta, Karambir Kaur, Abhishek Rajput, Sandeep Kumar Dhanda, Manika Sehgal, Mohammad Shoaib Khan, Isha Monga, Showkat Ahmad Dar, Sandeep Singh, Gandharva Nagpal, Salman Sadullah Usmani, Ashwani Kumar Thakur, Guneet Kaur, Shivangi Sharma, A. Bhardwaj, Abid Qureshi, Gajendra P. S. Raghava, Manoj Kumar
Software Mentions: 1
Published: almost 10 years ago

10.1155/2020/1673602

Recovery Dynamics of Intestinal Bacterial Communities of CCl4-Treated Mice with or without Mesenchymal Stem Cell Transplantation over Different Time Points
Cited by: 1
Author(s): Yanping Xu, Hua Zha, Wenyi Chen, Hong Cao, Lanjuan Li
Software Mentions: 1
Published: almost 6 years ago

10.1038/srep36491

ISL1-based LIM complexes control Slit2 transcription in developing cranial motor neurons
Cited by: 15
Author(s): Kyung Tai Kim, Namhee Kim, Hwan Ki Kim, Hojae Lee, Hannah N. Gruner, Péter Gergics, Chungoo Park, Grant S. Mastick, Hae Chul Park, Mi Ryoung Song
Software Mentions: 1
Published: almost 10 years ago

10.3390/biomedicines9081065

Clostridium butyricum MIYAIRI 588 Modifies Bacterial Composition under Antibiotic-Induced Dysbiosis for the Activation of Interactions via Lipid Metabolism between the Gut Microbiome and the Host
Cited by: 13
Author(s): Tadashi Ariyoshi, Mao Hagihara, Susumu Tomono, Shuhei Eguchi, Ayaka Minemura, Daiki Miura, Koichiro Oka, Motomichi Takahashi, Yuka Yamagishi, Hiroshige Mikamo
Software Mentions: 1
Published: about 5 years ago

10.3390/biomedicines9070753

The Gut Microbiota-Immunity Axis in ALS: A Role in Deciphering Disease Heterogeneity?
Cited by: 22
Author(s): Elena Niccolai, Vincenzo Di Pilato, Giulia Nannini, Simone Baldi, Edda Russo, Elisabetta Zucchi, Ilaria Martinelli, Marta Menicatti, Gianluca Bartolucci, Jessica Mandrioli, Amedeo Amedei
Software Mentions: 1
Published: about 5 years ago

10.3390/biomedicines8090349

Lung Microbiome Differentially Impacts Survival of Patients with Non-Small Cell Lung Cancer Depending on Tumor Stroma Phenotype
Cited by: 23
Author(s): О. В. Ковалева, P. A. Podlesnaya, М. А. Рашидова, Daria V. Samoilova, Anatoly Petrenko, I. B. Zborovskaya, В В Мочальникова, С. В. Черкасов, Yuriy A. Khlopko, А. О. Плотников, Alexei Gratchev
Software Mentions: 1
Published: almost 6 years ago

10.3390/biomedicines9070743

Prognostic Significance of the Microbiome and Stromal Cells Phenotype in Esophagus Squamous Cell Carcinoma
Cited by: 7
Author(s): О. В. Ковалева, P. A. Podlesnaya, М. А. Рашидова, Daria V. Samoilova, Anatoly Petrenko, В В Мочальникова, С. В. Черкасов, Yuriy A. Khlopko, А. О. Плотников, Alexei Gratchev
Software Mentions: 1
Published: about 5 years ago

10.1038/srep43296

Glucocorticoid receptor positively regulates transcription of FNDC5 in the liver
Cited by: 28
Author(s): Hyoung Kyu Kim, Yu Jeong Jeong, In-Sung Song, Yeon Hee Noh, Kyo Won Seo, Min Kim, Jin Han
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43605

A Core Regulatory Circuit in Glioblastoma Stem Cells Links MAPK Activation to a Transcriptional Program of Neural Stem Cell Identity
Cited by: 19
Author(s): Gregory Riddick, Svetlana Kotliarova, Virginia Rodriguez, H. S. Kim, Amanda Linkous, Andrew J. Storaska, Susie Ahn, Jennifer Walling, Galina I. Belova, Howard A. Fine
Software Mentions: 1
Published: over 9 years ago

10.3390/biom11010034

Prophylactic Treatment with Vitamins C and B2 for Methotrexate-Induced Gastrointestinal Mucositis
Cited by: 10
Author(s): Ana Rita da Silva Ferreira, Hannah R. Wardill, Rick Havinga, Wim J. E. Tissing, Hermie J. M. Harmsen
Software Mentions: 1
Published: over 5 years ago

10.3390/biom10040559

Variation in ω-3 and ω-6 Polyunsaturated Fatty Acids Produced by Different Phytoplankton Taxa at Early and Late Growth Phase
Cited by: 16
Author(s): Sami J. Taipale, Elina Peltomaa, Pauliina Salmi
Software Mentions: 1
Published: over 6 years ago

10.1038/srep45338

Identification and comparative analysis of the epidermal differentiation complex in snakes
Cited by: 24
Author(s): Karin Brigit Holthaus, Veronika Mlitz, Bettina Strasser, Erwin Tschachler, Lorenzo Alibardi, Leopold Eckhart
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-021-01095-w

Vibrio vulnificus induces the death of a major bacterial species in the mouse gut via cyclo-Phe-Pro
Cited by: 3
Author(s): Jeong‐A Kim, Bo-Ram Jang, Yu-Ra Kim, You-Chul Jung, Kun-Soo Kim, Kyung-Jo Lee
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.53165

Keratin 14-dependent disulfides regulate epidermal homeostasis and barrier function via 14-3-3σ and YAP1
Cited by: 29
Author(s): Yajuan Guo, Catherine J. Redmond, Krystynne A Leacock, Margarita V. Brovkina, Suyun Ji, Vinod Jaskula-Ranga, Pierre A. Coulombe
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.43017

MYOD1 functions as a clock amplifier as well as a critical co-factor for downstream circadian gene expression in muscle
Cited by: 46
Author(s): Brian A. Hodge, Xiping Zhang, Miguel A. Gutiérrez-Monreal, Yi Cao, David W. Hammers, Zizhen Yao, Christopher A. Wolff, Ping Du, Denise Kemler, Andrew R. Judge, Karyn A. Esser
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.57679

The testis protein ZNF165 is a SMAD3 cofactor that coordinates oncogenic TGFβ signaling in triple-negative breast cancer
Cited by: 16
Author(s): Zane A. Gibbs, Luis C Reza, Chun‐Chia Cheng, Jill M. Westcott, Kathleen McGlynn, Angelique W. Whitehurst
Software Mentions: 1
Published: about 6 years ago

10.1186/s40168-014-0064-3

Mapping axillary microbiota responsible for body odours using a culture-independent approach
Cited by: 81
Author(s): Myriam Troccaz, Nadia Gaïa, Sabine Beccucci, Jacques Schrenzel, Isabelle Cayeux, Christian Starkenmann, Vladimir Lazarević
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.13024

Tissue damage drives co-localization of NF-κB, Smad3, and Nrf2 to direct Rev-erb sensitive wound repair in mouse macrophages
Cited by: 61
Author(s): Dawn Z Eichenfield, Ty D. Troutman, Verena M. Link, Michael T. Lam, Han Cho, David Gosselin, Nathanael J. Spann, Hanna P. Lesch, Jenhan Tao, Jun Muto, Richard L. Gallo, Ronald M. Evans, Christopher K. Glass
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.34410

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb
Cited by: 129
Author(s): Carsten Wolff, Jean-Yves Tinévez, Tobias Pietzsch, Evangelia Stamataki, Benjamin Harich, Léo Guignard, Stephan Preibisch, Spencer Shorte, Philipp J. Keller, Pavel Tomančák, Anastasios Pavlopoulos
Software Mentions: 1
Published: over 8 years ago

10.1186/s40168-019-0680-z

Metagenomic analysis of isolation methods of a targeted microbe, Campylobacter jejuni, from chicken feces with high microbial contamination
Cited by: 13
Author(s): Junhyung Kim, Jae Ho Guk, Seung Hyun Mun, Jae Uk An, Hyokeun Song, Jinshil Kim, Sangryeol Ryu, Byeonghwa Jeon, Seongbeom Cho
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.38906

Recurrent loss of HMGCS2 shows that ketogenesis is not essential for the evolution of large mammalian brains
Cited by: 31
Author(s): David Jebb, Michael Hiller
Software Mentions: 1
Published: almost 8 years ago

10.1186/s40168-017-0254-x

Exposure to household furry pets influences the gut microbiota of infants at 3–4 months following various birth scenarios
Cited by: 177
Author(s): Hein Min Tun, Theodore Konya, Tim K. Takaro, Jeffrey R. Brook, Radha Chari, Catherine J. Field, David S. Guttman, Allan B. Becker, Piush J. Mandhane, Stuart E. Turvey, Padmaja Subbarao, Malcolm R. Sears, James A. Scott, Anita L. Kozyrskyj
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.56383

Stem cell niche exit in C. elegans via orientation and segregation of daughter cells by a cryptic cell outside the niche
Cited by: 21
Author(s): Kristie Gordon, Jay W Zussman, Xin Li, Camille Miller, David R. Sherwood
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.23570

Functional mapping of yeast genomes by saturated transposition
Cited by: 115
Author(s): Agnès H. Michel, Riko Hatakeyama, Philipp Kimmig, Meret Arter, Matthias Peter, Joao Matos, Claudio De Virgilio, Benoı̂t Kornmann
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.12089

Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity
Cited by: 102
Author(s): Prithvi Raj, Ekta Rai, Ran Song, Shaheen Khan, Benjamin Wakeland, Kasthuribai Viswanathan, Carlos Arana, Chao Liang, Bo Zhang, Igor Dozmorov, Ferdicia Carr-Johnson, Mitja Mitrovič, Graham B. Wiley, Jennifer A. Kelly, Bernard Lauwerys, Nancy J. Olsen, Chris Cotsapas, Christine Kim Garcia, Carol A. Wise, John B. Harley, Swapan K. Nath, Judith A. James, Chaim O. Jacob, Betty P. Tsao, Chandrashekhar Pasare, David R. Karp, Quan Zhen Li, Patrick M. Gaffney, Edward K. Wakeland
Software Mentions: 1
Published: over 10 years ago

10.1186/2049-2618-2-28

Cell-associated bacteria in the human lung microbiome
Cited by: 66
Author(s): Robert P. Dickson, John R. Erb-Downward, Hallie C. Prescott, Fernando J. Martínez, Jeffrey L. Curtis, Vibha N. Lama, Gary B. Huffnagle
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.65041

Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk
Cited by: 36
Author(s): Juan Manuel Vazquez, Vincent J. Lynch
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms12128695

Genetic Association and Altered Gene Expression of Mir-155 in Multiple Sclerosis Patients
Cited by: 91
Author(s): Elvezia Maria Paraboschi, Giulia Soldà, Donato Gemmati, Elisa Orioli, G Zeri, Maria Donata Benedetti, Alessandro Salviati, Nadia Barizzone, Maurizio Leone, Stefano Duga, Rosanna Asselta
Software Mentions: 1
Published: over 14 years ago

10.3390/ijms151120158

A Microdeletion of Chromosome 9q33.3 Encompasses the Entire LMX1B Gene in a Chinese Family with Nail Patella Syndrome
Cited by: 6
Author(s): Shujuan Jiang, Jiubin Zhang, Dan Huang, Yuanyuan Zhang, Xiaoliang Liu, Yinzhao Wang, Rong He, Yanyan Zhao
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms161023545

A Large-Scale Analysis of the Relationship of Synonymous SNPs Changing MicroRNA Regulation with Functionality and Disease
Cited by: 27
Author(s): Yuchen Wang, Chengxiang Qiu, Qinghua Cui
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms18030492

Hotspot Selective Preference of the Chimeric Sequences Formed in Multiple Displacement Amplification
Cited by: 8
Author(s): Jing Tu, Na Lü, Mengqin Duan, Mengting Huang, Liang Chen, Junji Li, Jing Guo, Lu Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s40168-020-00872-3

Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites
Cited by: 24
Author(s): Martyna Marynowska, Xavier Goux, David Sillam‐Dussès, Corinne Rouland-Lefèvre, Rashi Halder, Paul Wilmes, Piotr Gawron, Yves Roisin, Philippe Delfosse, Magdalena Całusińska
Software Mentions: 1
Published: about 6 years ago