10.1093/ve/veaa001

The evolution of protein domain repertoires: Shedding light on the origins of the Herpesviridae family
Cited by: 8
Author(s): Anderson F. Brito, John W. Pinney
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1004316

Structure of CfaA Suggests a New Family of Chaperones Essential for Assembly of Class 5 Fimbriae
Cited by: 8
Author(s): Rui Bao, April Fordyce, Chen Yuxing, Annette L. McVeigh, Stephen J. Savarino, Di Xia
Software Mentions: 1
Published: about 12 years ago

10.3390/v10060297

Burkholderia cenocepacia Prophages—Prevalence, Chromosome Location and Major Genes Involved
Cited by: 14
Author(s): Bartosz Roszniowski, Siobhán McClean, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: about 8 years ago

10.3390/v13020285

Phylogeographic Genetic Diversity in the White Sucker Hepatitis B Virus across the Great Lakes Region and Alberta, Canada
Cited by: 1
Author(s): Cynthia R. Adams, Vicki S. Blazer, James Sherry, Robert S. Cornman, Luke R. Iwanowicz
Software Mentions: 1
Published: over 5 years ago

10.12688/wellcomeopenres.16012.1

The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861)
Cited by: 15
Author(s): Iliana Bista, Shane McCarthy, Jonathan Wood, Zemin Ning, William H. Detrich, Thomas Desvignes, John H. Postlethwait, William Chow, Kerstin Howe, James Torrance, Michelle Smith, Karen Oliver, Eric A. Miska, Richard Durbin
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1004682

A Crystal Structure of the Dengue Virus NS5 Protein Reveals a Novel Inter-domain Interface Essential for Protein Flexibility and Virus Replication
Cited by: 174
Author(s): Yongxiang Zhao, Tingjin Sherryl Soh, Jie Zheng, Kitti Wing Ki Chan, Wint Wint Phoo, Chin Chin Lee, Moon Y. F. Tay, Kunchithapadam Swaminathan, Tobias Cornvik, Siew Pheng Lim, Pei–Yong Shi, Julien Lescar, Subhash G. Vasudevan, Dahai Luo
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004756

Structure of the Low pH Conformation of Chandipura Virus G Reveals Important Features in the Evolution of the Vesiculovirus Glycoprotein
Cited by: 21
Author(s): Eduard Baquero, Aurélie A. Albertini, Hélène Raux, Linda Buonocore, John K. Rose, Stéphane Bressanelli, Yves Gaudin
Software Mentions: 1
Published: over 11 years ago

10.1186/s13071-016-1767-z

Bacterial diversity of the American sand fly Lutzomyia intermedia using high-throughput metagenomic sequencing
Cited by: 37
Author(s): Carolina Cunha Monteiro, Luís Eduardo Martinez Villegas, Thaís Bonifácio Campolina, Ana Clara Machado Araújo Pires, José Carlos Miranda, Paulo Filemon Paolucci Pimenta, Nágila Francinete Costa Secundino
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1005042

Human Non-neutralizing HIV-1 Envelope Monoclonal Antibodies Limit the Number of Founder Viruses during SHIV Mucosal Infection in Rhesus Macaques
Cited by: 132
Author(s): Sampa Santra, Georgia D. Tomaras, Ranjit Warrier, Nathan I. Nicely, Hua‐Xin Liao, Justin Pollara, Pinghuang Liu, S. Munir Alam, Ruijun Zhang, Sarah L. Cocklin, Xiaoying Shen, Ryan Duffy, Shi-Mao Xia, Robert J. Schutte, Charles W. Pemble, S. Moses Dennison, Hui Li, Andrew Chao, Kora Vidnovic, Abbey Evans, Katja Klein, Amit Kumar, James E. Robinson, Gary Landucci, Donald N. Forthal, David C. Montefiori, Jaranit Kaewkungwal, Sorachai Nitayaphan, Punnee Pitisuttithum, Supachai Rerks-Ngarm, Merlin L. Robb, Nelson L. Michael, Jerome H. Kim, Kelly A. Soderberg, Elena E. Giorgi, Lily Blair, Bette T. Korber, Christiane Moog, Robin J. Shattock, Norman L. Letvin, Jörn E. Schmitz, M. Anthony Moody, Feng Gao, Guido Ferrari, George M. Shaw, Barton F. Haynes
Software Mentions: 1
Published: about 11 years ago

10.3390/pathogens9050320

Feasibility of Known RNA Polymerase Inhibitors as Anti-SARS-CoV-2 Drugs
Cited by: 26
Author(s): Ujjwal Neogi, Kyle J. Hill, Anoop T. Ambikan, Xiao Heng, Thomas P. Quinn, Siddappa N. Byrareddy, Anders Sönnerborg, Stefan G. Sarafianos, Kamal Singh
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1005269

Structural Insight into Archaic and Alternative Chaperone-Usher Pathways Reveals a Novel Mechanism of Pilus Biogenesis
Cited by: 28
Author(s): Natalia Pakharukova, James A. Garnett, Minna Tuittila, Sari Paavilainen, Mamou Diallo, Yingqi Xu, Stephen Matthews, Anton V. Zavialov
Software Mentions: 1
Published: almost 11 years ago

10.7717/peerj.3776

Genome-wide identification of the<i>MADS-box</i>transcription factor family in pear (<i>Pyrus bretschneideri</i>) reveals evolution and functional divergence
Cited by: 33
Author(s): Runze Wang, Meiling Ming, Jiaming Li, Dongqing Shi, Xin Qiao, Leiting Li, Shaoling Zhang, Wu Jun
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1005411

An Open Receptor-Binding Cavity of Hemagglutinin-Esterase-Fusion Glycoprotein from Newly-Identified Influenza D Virus: Basis for Its Broad Cell Tropism
Cited by: 81
Author(s): Hao Song, Jianxun Qi, Zahra Khedri, Sandra Díaz, Hai Yu, Xi Chen, Ajit Varki, Yi Shi, George F. Gao
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.2388

Genome-wide identification and characterization of GRAS transcription factors in sacred lotus (<i>Nelumbo nucifera</i>)
Cited by: 30
Author(s): Yu Wang, Shenglu Shi, Ying Zhou, Yu Zhou, Jie Yang, Xiao‐Qing Tang
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1005523

Initiation of RNA Polymerization and Polymerase Encapsidation by a Small dsRNA Virus
Cited by: 39
Author(s): Aaron M. Collier, Outi Lyytinen, Yusong R. Guo, Yukimatsu Toh, Minna M. Poranen, Yizhi Jane Tao
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005779

How Quorum Sensing Connects Sporulation to Necrotrophism in Bacillus thuringiensis
Cited by: 36
Author(s): Stéphane Perchat, Antoine Talagas, Sandrine Poncet, Noureddine Lazar, I. Li de la Sierra-Gallay, Michel Gohar, Didier Lereclus, Sylvie Nessler
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1005859

Engineering, Structure and Immunogenicity of the Human Metapneumovirus F Protein in the Postfusion Conformation
Cited by: 42
Author(s): Vicente Más, Rodriguez Laura, Eduardo Olmedillas, Olga Cano, Concepción Palomo, María C. Terrón, Daniel Luque, José A. Melero, Jason S. McLellan
Software Mentions: 1
Published: almost 10 years ago

10.7717/peerj.10961

Genome-wide identification of HSF family in peach and functional analysis of <i>PpHSF5</i> involvement in root and aerial organ development
Cited by: 13
Author(s): Bin Tan, Yan Liu, Huannan Li, Xiaodong Lian, Jun Cheng, Wei Wang, Xianbo Zheng, Xiaobei Wang, Jidong Li, Ye Xia, Langlang Zhang, Zhiqian Li, Jiancan Feng
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.1961

Heat shock factors in tomatoes: genome-wide identification, phylogenetic analysis and expression profiling under development and heat stress
Cited by: 62
Author(s): Xuedong Yang, Weimin Zhu, Hui Zhang, Na Liu, Shoubo Tian
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005813

Mechanistic Insight into Bunyavirus-Induced Membrane Fusion from Structure-Function Analyses of the Hantavirus Envelope Glycoprotein Gc
Cited by: 63
Author(s): Pablo Guardado-Calvo, Eduardo A Bignon, Eva Styková, Scott A. Jeffers, Jimena Pérez‐Vargas, Gérard Péhau‐Arnaudet, M. Alejandra Tortorici, Jean Luc Jestin, Patrick England, Nicole D. Tischler, F.A. Rey
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1005980

Structural Insights into Streptococcal Competence Regulation by the Cell-to-Cell Communication System ComRS
Cited by: 43
Author(s): Antoine Talagas, Laetitia Fontaine, Ledesma-Garca Laura, Johann Mignolet, I. Li de la Sierra-Gallay, Noureddine Lazar, Magali Aumont-Niçaise, Michael J. Federle, Gerd Prehna, Pascal Hols, Sylvie Nessler
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.10934

Genome-wide identification and characterization of the <i>OFP</i> gene family in Chinese cabbage (<i>Brassica rapa</i> L. ssp. <i>pekinensis</i>)
Cited by: 1
Author(s): Ruihua Wang, Han TaiLi, Jifeng Sun, Liang Xu, Jingjing Fan, Hui Cao, Chunxiang Liu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1006074

Structure and Recognition of a Novel HIV-1 gp120-gp41 Interface Antibody that Caused MPER Exposure through Viral Escape
Cited by: 32
Author(s): Constantinos Kurt Wibmer, Jason Gorman, Gabriel Ozorowski, Jinal N. Bhiman, Daniel J. Sheward, Debra Elliott, Julie A. Rouelle, Ashley Smira, Michael Joyce, Nonkululeko Ndabambi, Aliaksandr Druz, Mangaiarkarasi Asokan, Dennis R. Burton, Mark Connors, Salim Safurdeen. Abdool Karim, John R. Mascola, James E. Robinson, Andrew B. Ward, Carolyn Williamson, Peter D. Kwong, Lynn Morris, Penny L. Moore
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.1950

Genome sequencing and analysis of the first complete genome of<i>Lactobacillus kunkeei</i>strain MP2, an<i>Apis mellifera</i>gut isolate
Cited by: 19
Author(s): Freddy Asenjo, Alejandro Olmos, Patricia Henríquez‐Piskulich, Víctor Polanco, Patricia Aldea, Juan A. Ugalde, Annette N. Trombert
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1006182

Boosting of HIV envelope CD4 binding site antibodies with long variable heavy third complementarity determining region in the randomized double blind RV305 HIV-1 vaccine trial
Cited by: 38
Author(s): David Easterhoff, M. Anthony Moody, Daniela Fera, Hao Cheng, Margaret E. Ackerman, Kevin Wiehe, Kevin O. Saunders, Justin Pollara, Nathan Vandergrift, Rob Parks, Jerome Kim, Nelson L. Michael, Robert J. O’Connell, Jean–Louis Excler, Merlin L. Robb, Sandhya Vasan, Supachai Rerks-Ngarm, Jaranit Kaewkungwal, Punnee Pitisuttithum, Sorachai Nitayaphan, Faruk Sinangil, James Tartaglia, Sanjay Phogat, Thomas B. Kepler, S. Munir Alam, Hua‐Xin Liao, Guido Ferrari, Michael S. Seaman, David C. Montefiori, Georgia D. Tomaras, Stephen C. Harrison, Barton F. Haynes
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.7509

Genome-wide identification and expression analysis of the <i>VQ</i> gene family in soybean (<i>Glycine max</i>)
Cited by: 13
Author(s): Yongbin Wang, Zhenfeng Jiang, Zhenxiang Li, Youbing Zhao, Weiwei Tan, Zhaojun Liu, Shaobin Cui, Xiongbin Yu, Jun Ma, Guangjin Wang, Wenbin Li
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.ppat.1006394

Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein
Cited by: 49
Author(s): Jianhua Zhao, Ksenia Beyrakhova, Yao Liu, Claudia P. Alvarez, Stephanie A. Bueler, Li Xu, Caishuang Xu, Michal T. Boniecki, Voula Kanelis, Zhao‐Qing Luo, Mirosław Cygler, J.L. Rubinstein
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1006474

Crystal structure of Middle East respiratory syndrome coronavirus helicase
Cited by: 105
Author(s): Hao Wu, Justyna Aleksandra Wojdyla, Rong Zhao, Ruiyun Han, Rajat S. Das, Ivan Zlatev, Muthiah Manoharan, Meitian Wang, Sheng Cui
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1006636

Nanobodies targeting norovirus capsid reveal functional epitopes and potential mechanisms of neutralization
Cited by: 45
Author(s): A.D. Koromyslova, Grant S. Hansman
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.10483

Genome-wide member identification, phylogeny and expression analysis of PEBP gene family in wheat and its progenitors
Cited by: 9
Author(s): Lü Dong, Yue Lu, Shubing Liu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1006777

Two classes of protective antibodies against Pseudorabies virus variant glycoprotein B: Implications for vaccine design
Cited by: 29
Author(s): Xiangdong Li, Fulun Yang, Xule Hu, Feifei Tan, Jianxun Qi, Ruchao Peng, Min Wang, Yan Chai, Liqing Hao, Junhua Deng, Chenyu Bai, Juan Wang, Hao Song, Shuguang Tan, Guangwen Lu, George F. Gao, Yi Shi, Kegong Tian
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.9309

Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant <i>Hypopitys monotropa</i>, its structure, gene expression and RNA editing
Cited by: 16
Author(s): Victoria Shtratnikova, Mikhail I. Schelkunov, Aleksey A. Penin, Maria D. Logacheva
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1006811

Indole-3-acetaldehyde dehydrogenase-dependent auxin synthesis contributes to virulence of Pseudomonas syringae strain DC3000
Cited by: 99
Author(s): Sheri A. McClerklin, Soon Goo Lee, Christopher P. Harper, Ron Nwumeh, Joseph M. Jez, Barbara N. Kunkel
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006998

PgaB orthologues contain a glycoside hydrolase domain that cleaves deacetylated poly-β(1,6)-N-acetylglucosamine and can disrupt bacterial biofilms
Cited by: 52
Author(s): Dustin J. Little, Roland Pfoh, François Le Mauff, Natalie C. Bamford, Christina Notte, Perrin Baker, Manita Guragain, Howard Robinson, Gerald B. Pier, Mark Nitz, Rajendar Deora, Donald C. Sheppard, P. Lynne Howell
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.8273

The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns
Cited by: 15
Author(s): Sonja I. Repetti, Christopher J. Jackson, Louise M. Judd, Ryan R. Wick, Kathryn E. Holt, Heroen Verbruggen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1007052

RitR is an archetype for a novel family of redox sensors in the streptococci that has evolved from two-component response regulators and is required for pneumococcal colonization
Cited by: 15
Author(s): David G. Glanville, Lu Han, Andrew J. Maule, Alexandra Woodacre, Devsaagar Thanki, Iman Tajer Abdullah, Julie A. Morrissey, Tom Clarke, Hasan Yeşilkaya, N.R. Silvaggi, Andrew T. Ulijasz
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007224

Molecular basis for CesT recognition of type III secretion effectors in enteropathogenic Escherichia coli
Cited by: 13
Author(s): Dustin J. Little, Brian K. Coombes
Software Mentions: 1
Published: about 8 years ago

10.7717/peerj.10275

Cytological and molecular characterizations of a novel 2A nullisomic line derived from a widely-grown wheat cultivar Zhoumai 18 conferring male sterility
Cited by: 1
Author(s): Zhixin Jiao, Xin‐Xin Zhu, Huijuan Li, Zhitao Liu, Xinyi Huang, Nan Wu, Junhang An, Junchang Li, Jing Zhang, Yumei Jiang, Qiaoyun Li, Zengjun Qi, Jishan Niu
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1007343

Structure-guided disruption of the pseudopilus tip complex inhibits the Type II secretion in Pseudomonas aeruginosa
Cited by: 15
Author(s): Yichen Zhang, Frédérick Faucher, Wenwen Zhang, Shu Wang, Nolan Neville, Keith Poole, Jun Zheng, Zongchao Jia
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.12221

Key <i>auxin response factor</i> (ARF) genes constraining wheat tillering of mutant <i>dmc</i>
Cited by: 8
Author(s): Junchang Li, Yumei Jiang, Jing Zhang, Yongjing Ni, Zhixin Jiao, Huijuan Li, Ting Wang, Peipei Zhang, Wenlong Guo, Lei Li, Hongjie Liu, Hairong Zhang, Qiaoyun Li, Jishan Niu
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.3269

Accumulation and expression of multiple antibiotic resistance genes in <i>Arcobacter cryaerophilus</i> that thrives in sewage
Cited by: 27
Author(s): Jess A. Millar, Rahul Raghavan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1007659

Structural determination of the complement inhibitory domain of Borrelia burgdorferi BBK32 provides insight into classical pathway complement evasion by Lyme disease spirochetes
Cited by: 32
Author(s): Jialei Xie, Hui Zhi, Ryan J. Garrigues, Andrew Keightley, Brandon L. Garcia, Jon T. Skare
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.7511

Genome-wide identification and characterization of the <i>Hsp70</i> gene family in allopolyploid rapeseed (<i>Brassica napus</i> L.) compared with its diploid progenitors
Cited by: 7
Author(s): Ziwei Liang, Mengdi Li, Zhengyi Liu, Jianbo Wang
Software Mentions: 1
Published: about 7 years ago

10.1073/pnas.2020216118

Cross-species recognition of SARS-CoV-2 to bat ACE2
Cited by: 69
Author(s): Kefang Liu, Shuguang Tan, Sheng Niu, Jia Wang, Lili Wu, Huan Sun, Yanfang Zhang, Xiaoqian Pan, Xiao Qu, Pei Du, Yumin Meng, Yunfei Jia, Qian Chen, Chu‐Xia Deng, Jinghua Yan, Hongwei Wang, Qihui Wang, Jianxun Qi, George F. Gao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1008165

Cooperation between somatic mutation and germline-encoded residues enables antibody recognition of HIV-1 envelope glycans
Cited by: 5
Author(s): Nelson R. Wu, Nathan I. Nicely, Esther M. Lee, Rachel K. Reed, Brian Watts, Fangping Cai, William E. Walkowicz, Baptiste Aussedat, Julia A. Jones, Amanda Eaton, Ashley M. Trama, S. Munir Alam, David C. Montefiori, Barton F. Haynes, Kevin O. Saunders
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8727

Genome-wide investigation of WRKY transcription factors in Tartary buckwheat (<i>Fagopyrum tataricum</i>) and their potential roles in regulating growth and development
Cited by: 14
Author(s): Wenjun Sun, Zhaotang Ma, Hui Chen, Moyang Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1008336

The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication
Cited by: 27
Author(s): Tri Nguyen, Sohyoung Lee, Yi Yang, Changhwan Ahn, Ji Hyun Sim, Tiffany G. Kei, Karen N. Barnard, Hai Yu, Shawn K. Millano, Xi Chen, Colin R. Parrish, Jeongmin Song
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11371

The Sugar Transporter family in wheat (<i>Triticum aestivum</i>. L): genome-wide identification, classification, and expression profiling during stress in seedlings
Cited by: 4
Author(s): Hongzhan Liu, Chaoqiong Li, Qiao Lin, Lizong Hu, Xueqin Wang, Junsheng Wang, Xianle Ruan, Guangyu Robert Yang, Yin Guo, Chunping Wang, Zhongke Sun, Keshi Ma, Lili Li
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.3955

Genome-wide identification and characterization of GRAS transcription factors in tomato (<i>Solanum lycopersicum</i>)
Cited by: 44
Author(s): Niu Yiling, Tingting Zhao, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1007806

Potent, specific MEPicides for treatment of zoonotic staphylococci
Cited by: 12
Author(s): Rachel L. Edwards, Isabel Heueck, Soon Goo Lee, Ishaan Shah, Jenna Miller, Andrew J. Jezewski, Marwa O. Mikati, Xu Wang, Kenneth M. Heidel, Damon M. Osbourn, Carey-Ann D. Burnham, Sophie Alvarez, Stephanie A. Fritz, Cynthia S. Dowd, Joseph M. Jez, Audrey Odom John
Software Mentions: 1
Published: about 6 years ago

10.1111/pbi.12962

Recent polyploidization events in three<i>Saccharum</i>founding species
Cited by: 36
Author(s): Jisen Zhang, Qing Zhang, Leiting Li, Haibao Tang, Qiong Zhang, Chen Yang, Jie Arrow, Xingtan Zhang, Aiqin Wang, Chenyong Miao, Ray Ming
Software Mentions: 1
Published: about 8 years ago

10.1111/pbi.13456

Long‐read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant
Cited by: 38
Author(s): Harmeet Singh Chawla, HueyTyng Lee, Iulian Gabur, Paul Vollrath, Suriya Tamilselvan‐Nattar‐Amutha, Christian Obermeier, Sarah Schiessl, Jia‐Ming Song, Kede Liu, Liang Guo, Isobel A. P. Parkin, Rod J. Snowdon
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008734

Structural insight into the membrane targeting domain of the Legionella deAMPylase SidD
Cited by: 4
Author(s): Igor Tascón, Xiao Li, María Lucas, D’anna M. Nelson, A. Vidaurrazaga, Yi‐Han Lin, Adriana L. Rojas, Aitor Hierro, Matthias P. Machner
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.12831

Construction of <i>Agropyron</i> Gaertn. genetic linkage maps using a wheat 660K <scp>SNP</scp> array reveals a homoeologous relationship with the wheat genome
Cited by: 63
Author(s): Shumin Zhou, Jinpeng Zhang, Yonghe Che, Weihua Liu, Yuqing Lu, Xinming Yang, Xiuquan Li, Jizeng Jia, Xu Liu, Lihui Li
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1009089

A natural mutation between SARS-CoV-2 and SARS-CoV determines neutralization by a cross-reactive antibody
Cited by: 49
Author(s): Nicholas C. Wu, Meng Yuan, Sandhya Bangaru, Deli Huang, Xueyong Zhu, Chang-Chun David Lee, Hannah L. Turner, Linghang Peng, Linlin Yang, Dennis R. Burton, David Nemazee, Andrew B. Ward, Ian A. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1111/pbi.12606

A step change in the transfer of interspecific variation into wheat from <i>Amblyopyrum muticum</i>
Cited by: 95
Author(s): Julie King, Surbhi Grewal, Caiyun Yang, Stella Hubbart, Duncan Scholefield, Stephen Ashling, Stella Hubbart‐Edwards, Alexandra M. Allen, Amanda Burridge, Claire Bloor, Alessandro Davassi, Glacy Jaqueline da Silva, K. J. Chalmers, I. P. King
Software Mentions: 1
Published: almost 10 years ago

10.1073/pnas.1917726117

Phage liquid crystalline droplets form occlusive sheaths that encapsulate and protect infectious rod-shaped bacteria
Cited by: 67
Author(s): Abul K. Tarafder, Andriko von Kügelgen, Adam J. Mellul, Ulrike Schulze, Dirk G. A. L. Aarts, Tanmay A. M. Bharat
Software Mentions: 1
Published: over 6 years ago

10.1111/j.1467-7652.2012.00710.x

Large‐scale development of cost‐effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
Cited by: 208
Author(s): Pavana J Hiremath, Ashish Kumar, R. Varma Penmetsa, Andrew Farmer, Jessica A. Schlueter, Siva K. Chamarthi, Adam M. Whaley, Noelia Carrasquilla‐Garcia, Pooran M. Gaur, Hari D. Upadhyaya, P. B. Kavi Kishor, Trushar Shah, Douglas R. Cook, Rajeev K. Varshney
Software Mentions: 1
Published: about 14 years ago

10.1186/1746-4811-7-38

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform
Cited by: 51
Author(s): Tongwu Zhang, Xiaowei Zhang, Songnian Hu, Jun Yu
Software Mentions: 1
Published: over 14 years ago

10.1073/pnas.2013998117

Structure of the dimeric ATP synthase from bovine mitochondria
Cited by: 124
Author(s): T.E. Spikes, M.G. Montgomery, John E. Walker
Software Mentions: 1
Published: almost 6 years ago

10.1073/pnas.2017637117

Structure of eukaryotic DNA polymerase δ bound to the PCNA clamp while encircling DNA
Cited by: 36
Author(s): Fengwei Zheng, Roxana E. Georgescu, Li H, Mike O'Donnell
Software Mentions: 1
Published: almost 6 years ago

10.1111/ppa.13189

Cherry picking by pseudomonads: After a century of research on canker, genomics provides insights into the evolution of pathogenicity towards stone fruits
Cited by: 14
Author(s): Michelle T. Hulin, Robert W. Jackson, Richard J. Harrison, John W. Mansfıeld
Software Mentions: 1
Published: over 6 years ago

10.1073/pnas.2024512118

Molecular mechanisms of assembly and TRIP13-mediated remodeling of the human Shieldin complex
Cited by: 16
Author(s): Wei Xie, Shengliu Wang, Juncheng Wang, M. Jason de la Cruz, Guotai Xu, Maurizio Scaltriti, Dinshaw J. Patel
Software Mentions: 1
Published: over 5 years ago

10.3390/plants8020030

Evolutionary Analysis of GH3 Genes in Six Oryza Species/Subspecies and Their Expression under Salinity Stress in Oryza sativa ssp. japonica
Cited by: 35
Author(s): Weilong Kong, Hua Zhong, Xiaoxiao Deng, Mayank Gautam, Ziyun Gong, Yue Zhang, Gangqing Zhao, Chang Liu, Yangsheng Li
Software Mentions: 1
Published: over 7 years ago

10.3390/plants10020227

Genome-Wide Analysis of MDHAR Gene Family in Four Cotton Species Provides Insights into Fiber Development via Regulating AsA Redox Homeostasis
Cited by: 9
Author(s): Fangfang Zhou, Bowen Zheng, Fei Wang, Aiping Cao, Shuangquan Xie, Xifeng Chen, Joel Schick, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2022756118

Structure of Gcn1 bound to stalled and colliding 80S ribosomes
Cited by: 66
Author(s): Agnieszka A. Pochopien, Bertrand Beckert, Sergo Kasvandik, Otto Berninghausen, Roland Beckmann, Tanel Tenson, Daniel N. Wilson
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9040469

Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris
Cited by: 13
Author(s): Denis O. Omelchenko, Maksim Makarenko, Artem S. Kasianov, Mikhail I. Schelkunov, Maria D. Logacheva, Aleksey A. Penin
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9010032

Evolutionary Analysis of Calcium-Dependent Protein Kinase in Five Asteraceae Species
Cited by: 3
Author(s): Liping Zhu, Bowen Zheng, Wangyang Song, Hongbin Li, Xiang Jin
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9121661

Genome-Wide Identification of the Vacuolar H+-ATPase Gene Family in Five Rosaceae Species and Expression Analysis in Pear (Pyrus bretschneideri)
Cited by: 2
Author(s): Hongsheng Zhou, Wen Huang, Shufen Luo, Huali Hu, Yingtong Zhang, Leigang Zhang, Pengxia Li
Software Mentions: 1
Published: over 5 years ago

10.3390/plants8110438

Developing Chloroplast Genomic Resources from 25 Avena Species for the Characterization of Oat Wild Relative Germplasm
Cited by: 4
Author(s): Yong‐Bi Fu, Pingchuan Li, Bill Biligetu
Software Mentions: 1
Published: almost 7 years ago

10.1007/s13238-014-0035-2

Revisiting the TALE repeat
Cited by: 35
Author(s): Dong Deng, Chuangye Yan, Jianping Wu, Xiaojing Pan, Nieng Yan
Software Mentions: 1
Published: over 12 years ago

10.3390/plants10030538

The Draft Genome of a Flat Peach (Prunus persica L. cv. ‘124 Pan’) Provides Insights into Its Good Fruit Flavor Traits
Cited by: 16
Author(s): Aidi Zhang, Hui Zhou, Xiaohan Jiang, Yuepeng Han, Xiujun Zhang
Software Mentions: 1
Published: over 5 years ago

10.1007/s13238-014-0108-2

Structural insights into the catalytic mechanism of aldehyde-deformylating oxygenases
Cited by: 49
Author(s): Chunmei Jia, Mei Li, Jianjun Li, Jingjing Zhang, Hongmei Zhang, Peng Cao, Xiaowei Pan, Xuefeng Lü, Wenrui Chang
Software Mentions: 1
Published: over 11 years ago

10.3390/plants9030385

Cytoplasm Types Affect DNA Methylation among Different Cytoplasmic Male Sterility Lines and Their Maintainer Line in Soybean (Glycine max L.)
Cited by: 2
Author(s): Chunjing Lin, Bao Peng, Yongkuan Li, Pengnian Wang, Guolong Zhao, Xiaoyang Ding, Rong Li, Limei Zhao, Chunbao Zhang
Software Mentions: 1
Published: over 6 years ago

10.1007/s13238-015-0181-1

Molecular basis for the inhibition of β-hydroxyacyl-ACP dehydratase HadAB complex from Mycobacterium tuberculosis by flavonoid inhibitors
Cited by: 25
Author(s): Yuhui Dong, Xinwei Qiu, Neil Shaw, Yueyang Xu, Yuna Sun, Xuemei Li, Jun Li, Zihe Rao
Software Mentions: 1
Published: about 11 years ago

10.3390/plants8120526

Identification, Evolution, and Expression Profiling of Histone Lysine Methylation Moderators in Brassica rapa
Cited by: 7
Author(s): Gaofeng Liu, Nadeem Khan, Ma Xl, Xilin Hou
Software Mentions: 1
Published: almost 7 years ago

10.3390/plants9020233

In Silico Identification of QTL-Based Polymorphic Genes as Salt-Responsive Potential Candidates through Mapping with Two Reference Genomes in Rice
Cited by: 5
Author(s): Buddini Abhayawickrama, D. R. Gimhani, N. S. Kottearachchi, Venura Herath, D.S. Liyanage, Prasad Senadheera
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9080937

Identification and Bioinformatic Analysis of the GmDOG1-Like Family in Soybean and Investigation of Their Expression in Response to Gibberellic Acid and Abscisic Acid
Cited by: 3
Author(s): Yingzeng Yang, Chuan Zheng, Umashankar Chandrasekaran, Yu Liu, Chunyan Liu, Pu Tian, Xiaochun Wang, Junbo Du, Jiang Liu, Feng Yang, Taiwen Yong, Wenyu Yang, Weiguo Liu, Kai Shu
Software Mentions: 1
Published: about 6 years ago

10.3390/plants10071444

CAD Genes: Genome-Wide Identification, Evolution, and Their Contribution to Lignin Biosynthesis in Pear (Pyrus bretschneideri)
Cited by: 4
Author(s): Kaijie Qi, Xiaofei Song, Yazhou Yuan, Jianping Bao, Xin Gong, Xiaosan Huang, Khanizadeh Shahrokh, Shaoling Zhang, Shutian Tao
Software Mentions: 1
Published: about 5 years ago

10.1007/s13238-019-00671-z

Structural insights into substrate recognition by the type VII secretion system
Cited by: 23
Author(s): Shuhui Wang, Kaixuan Zhou, Xiaolin Yang, Bing Zhang, Yao Zhao, Yu Xiao, Xiuna Yang, Haitao Yang, Luke W. Guddat, Jun Li, Zihe Rao
Software Mentions: 1
Published: almost 7 years ago

10.1007/s13238-021-00871-6

An ultrapotent pan-β-coronavirus lineage B (β-CoV-B) neutralizing antibody locks the receptor-binding domain in closed conformation by targeting its conserved epitope
Cited by: 18
Author(s): Zezhong Liu, Wei Xu, Zhenguo Chen, Wangyang Fu, Wuqiang Zhan, Yidan Gao, Jie Zhou, Yunjiao Zhou, Jianbo Wu, Qin Wang, Xiang Zhang, Aihua Hao, Wei Wu, Qianqian Zhang, Yaming Li, Kaiyue Fan, Ruihong Chen, Qiaochu Jiang, Christian T. Mayer, Till Schoofs, Youhua Xie, Shibo Jiang, Yumei Wen, Zhenghong Yuan, Kang Wang, Lu Lu, Lei Sun, Qiao Wang
Software Mentions: 1
Published: almost 5 years ago

10.3390/plants9080999

Unravelling Cotton Nonexpressor of Pathogenesis-Related 1(NPR1)-Like Genes Family: Evolutionary Analysis and Putative Role in Fiber Development and Defense Pathway
Cited by: 8
Author(s): Neha Agarwal, Rakesh K. Srivastava, Akash Verma, Krishan Mohan, Babita Singh, Praveen Chandra Verma
Software Mentions: 1
Published: about 6 years ago

10.3390/plants10081626

Genome-Wide Identification, Phylogenetic and Expression Pattern Analysis of GATA Family Genes in Cucumber (Cucumis sativus L.)
Cited by: 9
Author(s): Kaijing Zhang, Jia Li, Dekun Yang, Yuchao Hu, Martin Kagiki Njogu, Panqiao Wang, Xingrong Lu, Chao‐Guo Yan
Software Mentions: 1
Published: about 5 years ago

10.3390/plants9050551

Mutagenic Effect of Three Ion Beams on Rice and Identification of Heritable Mutations by Whole Genome Sequencing
Cited by: 13
Author(s): Yunchao Zheng, Shan Li, Jianzhong Huang, Haidong Fu, Libin Zhou, Yoshiya Furusawa, Qingyao Shu
Software Mentions: 1
Published: over 6 years ago

10.1002/pro.3439

X-ray crystal structures of the type IVb secretion system DotB ATPases
Cited by: 14
Author(s): Marie S. Prevost, Gabriel Waksman
Software Mentions: 1
Published: about 8 years ago

10.3390/plants9040455

Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
Cited by: 28
Author(s): Shilin Cao, Ying Wang, Xuting Li, Fei Gao, Jinchao Feng, Yijun Zhou
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.0060177

Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
Cited by: 125
Author(s): Stephanie Simmons, Genevieve DiBartolo, Vincent J. Denef, Daniela S. Aliaga Goltsman, Michael P. Thelen, Jillian F. Banfield
Software Mentions: 1
Published: about 18 years ago

10.34133/2019/2602414

Crystal Structure of 4-Hydroxyphenylpyruvate Dioxygenase in Complex with Substrate Reveals a New Starting Point for Herbicide Discovery
Cited by: 55
Author(s): Hong‐Yan Lin, Xi Chen, Jianan Chen, Dawei Wang, Feng-Xu Wu, Song-Yun Lin, Zhan Chen, Jiawei Wu, Wen‐Chao Yang, Guang‐Fu Yang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12977-019-0489-7

Characterization of resistance to a potent d-peptide HIV entry inhibitor
Cited by: 5
Author(s): Amanda R. Smith, Matthew T. Weinstock, Amanda E. Siglin, Frank G. Whitby, James N. Francis, Christopher P. Hill, Debra M. Eckert, Michael J. Root, Michael S. Kay
Software Mentions: 1
Published: almost 7 years ago

10.1177/2472555220960428

Discovery of Drug-Like Ligands for the Mac1 Domain of SARS-CoV-2 Nsp3
Cited by: 30
Author(s): Rajdeep S Virdi, Robert Bavisotto, Nicholas C Hopper, Nemanja Vuksanovic, Trevor R Melkonian, N.R. Silvaggi, David N. Frick
Software Mentions: 1
Published: over 5 years ago

10.1016/j.xpro.2021.100642

Protocol for improving diffraction quality of leucyl-tRNA synthetase 1 with methylation and post-crystallization soaking and cooling in cryoprotectants
Cited by: 0
Author(s): Sulhee Kim, Ina Yoon, Sung Hoon Kim, Kwang Yeon Hwang
Software Mentions: 1
Published: almost 5 years ago

10.1126/sciadv.aax1836

Allosteric modulation of nucleoporin assemblies by intrinsically disordered regions
Cited by: 12
Author(s): Bartlomiej J. Blus, Junseock Koh, Aleksandra Królak, Hyuk‐Soo Seo, Elias Coutavas, Günter Blobel
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1006533

A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments
Cited by: 14
Author(s): Katharina Nöh, Sebastian Niedenführ, Martin Beyß, Wolfgang Wiechert
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1000200

Fusion and Fission of Genes Define a Metric between Fungal Genomes
Cited by: 23
Author(s): Pascal Durrens, Macha Nikolski, David James Sherman
Software Mentions: 1
Published: almost 18 years ago

10.1126/sciadv.abg9676

Genetic prion disease–related mutation E196K displays a novel amyloid fibril structure revealed by cryo-EM
Cited by: 24
Author(s): Liqiang Wang, Kun Zhao, Han-Ye Yuan, Xiangning Li, Hai-Bin Dang, Yeyang Ma, Qiang Wang, Chen Wang, Yunpeng Sun, Jie Chen, Dan Li, Delin Zhang, Ping Yin, Cong Liu, Yi Liang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1001061

Telomere Disruption Results in Non-Random Formation of De Novo Dicentric Chromosomes Involving Acrocentric Human Chromosomes
Cited by: 61
Author(s): Kaitlin M. Stimpson, Ihn Young Song, Anna Jauch, Heidi Holtgreve-Grez, Karen Hayden, Joanna M. Bridger, Beth A. Sullivan
Software Mentions: 1
Published: about 16 years ago

10.1038/s41597-019-0010-0

MHz data collection of a microcrystalline mixture of different jack bean proteins
Cited by: 4
Author(s): Marie Luise Grünbein, Johan Bielecki, A. Gorel, M. Stricker, Richard Bean, Marco Cammarata, Katerina Dörner, Lars Fröhlich, Elisabeth Hartmann, Steffen Hauf, M. Hilpert, Yoonhee Kim, Marco Kloos, Romain Letrun, Marc Messerschmidt, Grant Mills, Gabriela Nass Kovács, Marco Ramilli, C.M. Roome, Tokushi Sato, Matthias Scholz, Michel Sliwa, J. Sztuk-Dambietz, Martin H. Weik, Britta Weinhausen, Nasser Al-Qudami, Djelloul Boukhelef, Sándor Brockhauser, Wajid Ehsan, Moritz Emons, Sergey Esenov, Hans Fangohr, A. Kaukher, Thomas Kluyver, Max Lederer, Luis Maia, Maurizio Manetti, Thomas Michelat, A. Münnich, Florent Pallas, Guido Palmer, Gianpietro Previtali, Natascha Raab, A. Silenzi, J. Szuba, Sandhya Venkatesan, K. Wrona, Jun Zhu, R. Bruce Doak, Robert L. Shoeman, L. Foucar, J.P. Colletier, Adrian P. Mancuso, T.R.M. Barends, Claudiu A. Stan, Ilme Schlichting
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1008116

Infection mechanisms and putative effector repertoire of the mosquito pathogenic oomycete Pythium guiyangense uncovered by genomic analysis
Cited by: 24
Author(s): Danyu Shen, Zhaoyang Tang, Wei Cong, Jing Wang, Yue Dong, Yang Chen, Yun Wei, Biao Cheng, Meiqian Zhang, Laura J. Grenville‐Briggs, Brett M. Tyler, Daolong Dou, Ai Xia
Software Mentions: 1
Published: over 7 years ago

10.1038/srep09762

Protein stabilization utilizing a redefined codon
Cited by: 33
Author(s): Kazumasa Ohtake, Atsushi Yamaguchi, Takahito Mukai, Hiroki Kashimura, Nobutaka Hirano, Mitsuru Haruki, Sosuke Kohashi, Kazumasa Yamagishi, Kazutaka Murayama, Yuri Tomabechi, Takashi Itagaki, Ryogo Akasaka, Masahito Kawazoe, Chie Takemoto, Mikako Shirouzu, Shigeyuki Yokoyama, Kensaku Sakamoto
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1000714

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides
Cited by: 152
Author(s): Paul J. McMurdie, Sebastian Behrens, Jochen A. Müller, Jonathan Göke, Kirsti M. Ritalahti, Ryan D. Wagner, Eugene Goltsman, Alla Lapidus, Susan Holmes, Frank E. Löffler, Alfred M. Spormann
Software Mentions: 1
Published: almost 17 years ago