10.1186/1471-2180-11-45

Small RNA profiling of Dengue virus-mosquito interactions implicates the PIWI RNA pathway in anti-viral defense
Cited by: 160
Author(s): Ann Hess, Abhishek N. Prasad, Andrey A. Ptitsyn, Gregory D. Ebel, Ken E. Olson, Cátálin Bárbácioru, Cinna K. Monighetti, Corey L. Campbell
Software Mentions: 1
Published: over 15 years ago

10.1186/s12866-016-0695-6

In vivo gene expression in a Staphylococcus aureus prosthetic joint infection characterized by RNA sequencing and metabolomics: a pilot study
Cited by: 36
Author(s): Yijuan Xu, Raluca Maltesen, Lone Heimann Larsen, Henrik Carl Schønheyder, Vang Quy Le, Jeppe Lund Nielsen, Per Halkjær Nielsen, Trine Rolighed Thomsen, Kåre Lehmann Nielsen
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-021-03108-0

Transcriptomic analysis to reveal the differentially expressed miRNA targets and their miRNAs in response to Ralstonia solanacearum in ginger species
Cited by: 9
Author(s): Mohandas Snigdha, D. Prasath
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-018-1479-y

OsWRKY67 positively regulates blast and bacteria blight resistance by direct activation of PR genes in rice
Cited by: 42
Author(s): Qing Liu, Xia Li, Shijuan Yan, Ting Yu, Yang Jiao, Jingfang Dong, Shaohong Zhang, Junliang Zhao, Ting Yang, Xingxue Mao, Xiaoyuan Zhu, Bin Liu
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-019-2037-y

Water-deficit responsive microRNAs in the primary root growth zone of maize
Cited by: 17
Author(s): Candace M. Seeve, Ramanjulu Sunkar, Yun Zheng, Li Liu, Zhijie Liu, Michael D. McMullen, Sven K. Nelson, Robert E. Sharp, Melvin J. Oliver
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-015-0537-y

The effect of red light and far-red light conditions on secondary metabolism in Agarwood
Cited by: 31
Author(s): Tony Kuo, Chuan-Hung Chen, Shu-Hwa Chen, I-Hsuan Lu, Mei-Ju Chu, Li-Chun Huang, Chung‐Yen Lin, Chien‐Yu Chen, Hsiao-Feng Lo, Shih‐Tong Jeng, Long‐Fang O. Chen
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-019-1940-6

RNA sequencing analysis of Cymbidium goeringii identifies floral scent biosynthesis related genes
Cited by: 32
Author(s): Mummadireddy Ramya, Pue Hee Park, Yu Chen Chuang, Oh Keun Kwon, Hye Ryun An, Pil Man Park, Yun Su Baek, Byoung Chorl Kang, Wen Chieh Tsai, Hong Hwa Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-014-0400-6

Identification and characterization of microRNAs from Chinese pollination constant non-astringent persimmon using high-throughput sequencing
Cited by: 45
Author(s): Yue Luo, Xiaona Zhang, Zhitian Luo, Qinglin Zhang, Jihong Liu
Software Mentions: 1
Published: over 11 years ago

10.1186/s12870-020-2265-1

Transcriptome profiling of Fagopyrum tataricum leaves in response to lead stress
Cited by: 26
Author(s): Lei Wang, Bo Zheng, Yahong Yuan, Quanxi Xu, Peng Chen
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.726211

Genome Size Doubling Arises From the Differential Repetitive DNA Dynamics in the Genus Heloniopsis (Melanthiaceae)
Cited by: 7
Author(s): Jaume Pellicer, P. Fernández, Michael F. Fay, Ester Michálková, Ilia J. Leitch
Software Mentions: 1
Published: almost 5 years ago

10.3389/fgene.2019.00782

Controlled Reduction of Genomic Heterozygosity in an Industrial Yeast Strain Reveals Wide Cryptic Phenotypic Variation
Cited by: 9
Author(s): Nádia Sampaio, Ruth A. Watson, Juan Lucas Argueso
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-018-1564-2

Comprehensive assembly and analysis of the transcriptome of maritime pine developing embryos
Cited by: 17
Author(s): Andreia S. Rodrigues, Jose J De Vega, Celia María Gonzalo Miguel
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0217287

The GCN2 inhibitor IMPACT contributes to diet-induced obesity and body temperature control
Cited by: 7
Author(s): Cátia M. Pereira, Renato Filev, Francisco Paulino Dubiela, Bruna B. Brandão, Cláudio Marcos Teixeira de Queiroz, Raissa G. Ludwig, Débora Cristina Hipólide, Beatriz M. Longo, Luiz E. Mello, Marcelo A. Mori, Beatriz A. Castilho
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-020-02638-3

Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species
Cited by: 8
Author(s): Gerardo Alejo‐Jacuinde, Sandra Isabel González-Morales, Araceli Oropeza-Aburto, June Simpson, Luis Herrera-Estrella
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-021-02827-8

Transcriptomic and chemical analyses to identify candidate genes involved in color variation of sainfoin flowers
Cited by: 5
Author(s): Yu Qiao, Qiming Cheng, Yutong Zhang, Yan Wang, Fengyan Yi, Fengling Shi
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-1824-9

Analysis of metabolic pathways related to fertility restoration and identification of fertility candidate genes associated with Aegilops kotschyi cytoplasm in wheat (Triticum aestivum L.)
Cited by: 7
Author(s): Sha Li, Zihan Liu, Yulin Jia, Jiali Ye, Xiaohong R. Yang, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-020-02330-6

Physiological and transcriptomic analyses reveal the mechanisms underlying the salt tolerance of Zoysia japonica Steud
Cited by: 16
Author(s): Jingjing Wang, Chunlei An, Hailin Guo, Xiangyang Yang, Jingbo Chen, Jingfeng Zong, Li Jianjian, Jianxiu Liu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-021-03172-6

De novo transcriptome analysis provides insights into formation of in vitro adventitious root from leaf explants of Arnebia euchroma
Cited by: 6
Author(s): Jyoti Devi, Ekjot Kaur, Mohit Kumar Swarnkar, Vishal Acharya, Shashi Bhushan
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2018.01011

Monitoring Extracellular Vesicle Cargo Active Uptake by Imaging Flow Cytometry
Cited by: 44
Author(s): Yifat Ofir-Birin, Paula Abou Karam, Ariel Rudik, Tal Giladi, Ziv Porat, Neta Regev‐Rudzki
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-018-1237-1

Resistance to Plum Pox Virus (PPV) in apricot (Prunus armeniaca L.) is associated with down-regulation of two MATHd genes
Cited by: 30
Author(s): Elena Zuriaga, Carlos Romero, José Blanca, M. L. Badenes
Software Mentions: 1
Published: over 8 years ago

10.3389/fimmu.2019.00116

Ultra-Sensitive CSF3R Deep Sequencing in Patients With Severe Congenital Neutropenia
Cited by: 12
Author(s): Maksim Klimiankou, Murat Uenalan, Siarhei Kandabarau, R. Nustede, I. Steiert, Sabine Mellor-Heineke, Cornelia Zeidler, Julia Skokowa, Karl Welte
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.01360

Inhibiting DNA Methylation Improves Survival in Severe Sepsis by Regulating NF-κB Pathway
Cited by: 26
Author(s): Luxi Cao, Tingting Zhu, Xiabing Lang, Jingquan Sha, Yi Yang, Chaohong Zhu, Yucheng Wang, Shi Feng, Cuili Wang, Ping Zhang, Jianghua Chen, Hong Jiang
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2018.02133

Anaphylatoxin Receptors C3aR and C5aR1 Are Important Factors That Influence the Impact of Ethanol on the Adipose Secretome
Cited by: 20
Author(s): Rebecca L. McCullough, Megan R. McMullen, Kyle L. Poulsen, Adam Kim, M. Edward Medof, Laura E. Nagy
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12935-018-0704-y

Silencing TRIP13 inhibits cell growth and metastasis of hepatocellular carcinoma by activating of TGF-β1/smad3
Cited by: 31
Author(s): Jianning Yao, Xuexiu Zhang, Yingbo Zhang, Dan Zhao, Bing Gao, Haining Zhou, Shilin Gao, Lianfeng Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12935-020-01221-y

A long non-coding RNA LINC00461-dependent mechanism underlying breast cancer invasion and migration via the miR-144-3p/KPNA2 axis
Cited by: 12
Author(s): Qiang Zhang, Xiaoyan Jin, Wei Shi, Xin Chen, Wenyang Pang, Xiang Yu, Linjun Yang
Software Mentions: 1
Published: over 6 years ago

10.1002/cam4.3406

Seven immune‐related genes prognostic power and correlation with tumor‐infiltrating immune cells in hepatocellular carcinoma
Cited by: 22
Author(s): Tiantian Liu, Hao Wu, Jianni Qi, Chengyong Qin, Qing Zhu
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.608856

Comparative Decomposition of Humans and Pigs: Soil Biogeochemistry, Microbial Activity and Metabolomic Profiles
Cited by: 8
Author(s): Jennifer M. DeBruyn, Katharina M. Hoeland, Lois S. Taylor, Jessica D. Stevens, Michelle A. Moats, Sreejata Bandopadhyay, Stephen P. Dearth, Hector F. Castro, Kaitlin K. Hewitt, Shawn R. Campagna, Angela Dautartas, Giovanna M. Vidoli, Amy Z. Mundorff, Dawnie Wolfe Steadman
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.2089

SIRT3 elicited an anti‐Warburg effect through HIF1α/PDK1/PDHA1 to inhibit cholangiocarcinoma tumorigenesis
Cited by: 37
Author(s): Lei Xu, Li Yang, Lixing Zhou, Robert Dorfman, Li Liu, Rui Cai, Chenfei Jiang, Dehua Tang, Yuming Wang, Xiaoping Zou, Lei Wang, Mingming Zhang
Software Mentions: 1
Published: over 7 years ago

10.1002/cam4.2099

Identification of competitive endogenous RNAs network in breast cancer
Cited by: 13
Author(s): Xiaojin Wang, Jiahui Wan, Zhanxiang Xu, Jiangbo Shu, Lin Ji, Yutian Liu, Shuwen Zhai, Rongjun Cui
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.01316

Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome
Cited by: 95
Author(s): Dmitry A. Rodionov, Aleksandr A. Arzamasov, Matvei Khoroshkin, Stanislav N. Iablokov, Semen A. Leyn, Scott N. Peterson, Pavel S. Novichkov, Andrei L. Osterman
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.590035

Analysis of Microbial Water Contamination, Soil Microbial Community Structure, and Soil Respiration in a Collaborative First-Year Students as Scholars Program (SAS)
Cited by: 1
Author(s): Leah T. Stiemsma, Stephen D. Davis, Jay L. Brewster
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000985

The AXL-PYK2-PKCα axis as a nexus of stemness circuits in TNBC
Cited by: 5
Author(s): Lohit Khera, Yaron Vinik, Flavio Maina, Sima Lev
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000688

IL-36 signaling in keratinocytes controls early IL-23 production in psoriasis-like dermatitis
Cited by: 33
Author(s): Jack Goldstein, Esen Yonca Bassoy, Assunta Caruso, Jennifer Palomo, Emiliana Rodriguez, Sylvain Lemeille, Cem Gabay
Software Mentions: 1
Published: over 6 years ago

10.1186/s12944-020-01222-w

Bioinformatics analysis of vascular RNA-seq data revealed hub genes and pathways in a novel Tibetan minipig atherosclerosis model induced by a high fat/cholesterol diet
Cited by: 22
Author(s): Yongming Pan, Yu Chen, Junjie Huang, Yili Rong, Jiaojiao Chen, Minli Chen
Software Mentions: 1
Published: over 6 years ago

10.1016/j.mec.2021.e00184

Transport engineering for improving the production and secretion of valuable alkaloids in Escherichia coli
Cited by: 8
Author(s): Yasuyuki Yamada, Miya Urui, Hidehiro Oki, Kai Inoue, Haruyuki Matsui, Yoshito Ikeda, Akira Nakagawa, Fumihiko Sato, Hiromichi Minami, Nobukazu Shitan
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.711377

Genomic Diversity of the Ostreid Herpesvirus Type 1 Across Time and Location and Among Host Species
Cited by: 10
Author(s): Benjamín Morga, Maude Jacquot, Camille Pelletier, Germain Chevignon, Lionel Dégremont, Antoine Biétry, Jean-François Pépin, Serge Heurtebise, Jean-Michel Escoubas, Tim P. Bean, Umberto Rosani, Changming Bai, Tristan Renault, Jean‐Baptiste Lamy
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00177

Study of the Metatranscriptome of Eight Social and Solitary Wild Bee Species Reveals Novel Viruses and Bee Parasites
Cited by: 55
Author(s): Karel Schoonvaere, Guy Smagghe, Frédéric Francis, Dirk C. de Graaf
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.695167

Fungal Interactions and Host Tree Preferences in the Spruce Bark Beetle Ips typographus
Cited by: 13
Author(s): Sifat Munim Tanin, D Kandasamy, Paal Krokene
Software Mentions: 1
Published: about 5 years ago

10.1111/1751-7915.13440

Integrated transcriptomic and secretomic approaches reveal critical pathogenicity factors in <i>Pseudofabraea citricarpa</i> inciting citrus target spot
Cited by: 6
Author(s): Yang Yong, Anfei Fang, Yang Yu, Chaowei Bi, Changyong Zhou
Software Mentions: 1
Published: about 7 years ago

10.1002/mbo3.899

Shared and unique microbes between Small hive beetles (<i>Aethina tumida</i>) and their honey bee hosts
Cited by: 9
Author(s): Qiang Huang, Dawn Lopez, Jay D. Evans
Software Mentions: 1
Published: about 7 years ago

10.1099/mic.0.000579

Haem-iron plays a key role in the regulation of the Ess/type VII secretion system of Staphylococcus aureus RN6390
Cited by: 15
Author(s): Maria Guillermina Casabona, Holger Kneuper, Daniela Alferes De Lima, Catriona P. Harkins, Martin Zoltner, Erik Hjerde, Matthew T. G. Holden, Tracy Palmer
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.02454

The Developmental Stage Symbionts of the Pea Aphid-Feeding Chrysoperla sinica (Tjeder)
Cited by: 19
Author(s): Chenchen Zhao, Hui Zhao, Shuai Zhang, Junyu Luo, Xiangzhen Zhu, Li Wang, Peng Zhao, Hongxia Hua, Jinjie Cui
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2019.02018

Increasing Temperature and Microplastic Fibers Jointly Influence Soil Aggregation by Saprobic Fungi
Cited by: 54
Author(s): Yun Liang, Anika Lehmann, Max‐Bernhard Ballhausen, Ludo A. H. Muller, Matthias C. Rillig
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.00637

Assessing Population Diversity of Brettanomyces Yeast Species and Identification of Strains for Brewing Applications
Cited by: 20
Author(s): Marc Serra Colomer, Anna Chailyan, Ross T. Fennessy, Kim Friis Olsson, Lea G. Johnsen, Natalia Solodovnikova, Jochen Förster
Software Mentions: 1
Published: over 6 years ago

10.1186/s40168-020-00812-1

A framework for assessing 16S rRNA marker-gene survey data analysis methods using mixtures.
Cited by: 1
Author(s): Nathan D. Olson, M. S. Binoj Kumar, Shan Li, Domenick J. Braccia, Stephanie Hao, Winston Timp, Marc Salit, O. Colin Stine, Héctor Corrada Bravo
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.02137

The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms
Cited by: 94
Author(s): Windi I. Muziasari, Leena Pitkänen, Henning Sørum, Robert D. Stedtfeld, James M. Tiedje, Marko Virta
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms9081591

Metatranscriptomic Analysis of Bacterial Communities on Laundered Textiles: A Pilot Case Study
Cited by: 4
Author(s): Susanne Jacksch, Christoph König, Dominik Kaiser, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.02372

Comparing the Healthy Nose and Nasopharynx Microbiota Reveals Continuity As Well As Niche-Specificity
Cited by: 85
Author(s): Ilke De Boeck, Stijn Wittouck, Sander Wuyts, Eline Oerlemans, Marianne F.L. van den Broek, Dieter Vandenheuvel, Olivier M. Vanderveken, Sarah Lebeer
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms9081626

Genetic Responses of Metabolically Active Limnospira indica Strain PCC 8005 Exposed to γ-Radiation during Its Lifecycle
Cited by: 1
Author(s): Anu Yadav, Laurens Maertens, Tim Meese, Filip Van Nieuwerburgh, Mohamed Mysara, Natalie Leys, Ann Cuypers, Paul Janssen
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms8030314

Molecular Mechanisms Underpinning Aggregation in Acidiphilium sp. C61 Isolated from Iron-Rich Pelagic Aggregates
Cited by: 4
Author(s): Qianqian Li, Rebecca E. Cooper, Carl‐Eric Wegner, Kirsten Küsel
Software Mentions: 1
Published: over 6 years ago

10.1093/molbev/msab099

Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias
Cited by: 13
Author(s): Janaína Lima de Oliveira, Atahualpa Castillo-Morales, Laurence D. Hurst, Araxi O. Urrutia, Christopher Thompson, Jason B. Wolf
Software Mentions: 1
Published: over 5 years ago

10.1093/molbev/msv112

Ecological and Genetic Barriers Differentiate Natural Populations of<i>Saccharomyces cerevisiae</i>
Cited by: 27
Author(s): Katie J. Clowers, Justin Heilberger, Jeff S. Piotrowski, Jessica L. Will, Audrey P. Gasch
Software Mentions: 1
Published: over 11 years ago

10.1186/s12943-018-0820-2

The lncRNA MACC1-AS1 promotes gastric cancer cell metabolic plasticity via AMPK/Lin28 mediated mRNA stability of MACC1
Cited by: 167
Author(s): Yang Zhao, Yajing Liu, Lin Li, Qiong Huang, Wanming He, Shuyi Zhang, Shilin Dong, Zhaowei Wen, Jinjun Rao, Wangjun Liao, Min Shi
Software Mentions: 1
Published: over 8 years ago

10.1093/beheco/arw087

Adult helpers increase the recruitment of closely related offspring in the cooperatively breeding rifleman
Cited by: 6
Author(s): Stephanie A. J. Preston, James V. Briskie, Ben J. Hatchwell
Software Mentions: 1
Published: about 10 years ago

10.3390/molecules22081292

Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus
Cited by: 28
Author(s): Minqian Wang, Jenni Firrman, Liqing Zhang, Gustavo Arango-Argoty, Peggy M. Tomasula, LinShu Liu, Weidong Xiao, Kit L. Yam
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01380

Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products
Cited by: 8
Author(s): Aline Moser, Daniel Wüthrich, Rémy Bruggmann, Elisabeth Eugster‐Meier, Léo Meile, Stefan Irmler
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2021.699788

Edging on Mutational Bias, Induced Natural Selection From Host and Natural Reservoirs Predominates Codon Usage Evolution in Hantaan Virus
Cited by: 9
Author(s): Galal Ata, Hao Wang, Haoxiang Bai, Xiaoting Yao, Shiheng Tao
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2015.00415

Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore
Cited by: 64
Author(s): Rebecca Bell, Jie Zheng, Erik Burrows, Sarah Allard, Charles Y. Wang, Christine E. Keys, David Melka, Errol Strain, Yan Luo, Marc W. Allard, Steven L. Rideout, Eric W. Brown
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2017.01726

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria
Cited by: 18
Author(s): Claudio Hidalgo-Cantabrana, Marco Antonio Moro-García, Aitor Blanco-Míguez, Florentino Fdez-Riverola, Anália Lourenço, Rebeca Alonso-Arias, Borja Sánchez
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.gfs.2020.100458

Why invest in Research &amp; Development for sorghum and millets? The business case for East and Southern Africa
Cited by: 10
Author(s): Alastair Orr, Christin Schipmann-Schwarze, A Gierend, Swamikannu Nedumaran, Catherine Mwema, Elijah Muange, Eric Manyasa, Henry Ojulong
Software Mentions: 1
Published: almost 6 years ago

10.1007/s10495-018-1505-4

Cornification of nail keratinocytes requires autophagy for bulk degradation of intracellular proteins while sparing components of the cytoskeleton
Cited by: 18
Author(s): Karin Jaeger, Supawadee Sukseree, Shaomin Zhong, Brett S. Phinney, Veronika Mlitz, Maria Buchberger, Marie-Sophie Narzt, Флориан Грубер, Erwin Tschachler, Robert H. Rice, Leopold Eckhart
Software Mentions: 1
Published: over 7 years ago

10.1111/pbi.13484

GhARF16‐1 modulates leaf development by transcriptionally regulating the<i>GhKNOX2‐1</i>gene in cotton
Cited by: 13
Author(s): Guanghui Xiao, Yuzhou Zhang, Hongbin Li, Xuan Fu, Hǎihóng Shāng, Changsong Zou, Jiřı́ Friml, Gao Xiao
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.xplc.2021.100164

The Xa7 resistance gene guards the rice susceptibility gene SWEET14 against exploitation by the bacterial blight pathogen
Cited by: 25
Author(s): Dangping Luo, José C. Huguet‐Tapia, R. Taylor Raborn, Frank F. White, Volker Brendel, Bing Yang
Software Mentions: 1
Published: over 5 years ago

10.1007/s00497-021-00413-4

Conserved, divergent and heterochronic gene expression during Brachypodium and Arabidopsis embryo development
Cited by: 20
Author(s): Zhaodong Hao, Zhongjuan Zhang, Daoquan Xiang, Prakash Venglat, Jinhui Chen, Peng Gao, Raju Datla, Dolf Weijers
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9080970

Histological, Physiological and Transcriptomic Analysis Reveal Gibberellin-Induced Axillary Meristem Formation in Garlic (Allium sativum)
Cited by: 10
Author(s): Hongjiu Liu, Yanbin Wen, Mingming Cui, Xiaofang Qi, Rui Deng, Jingcao Gao, Zhihui Cheng
Software Mentions: 1
Published: about 6 years ago

10.3390/plants8120603

Conjunctive Analyses of BSA-Seq and BSR-Seq to Reveal the Molecular Pathway of Leafy Head Formation in Chinese Cabbage
Cited by: 13
Author(s): Rui Li, Zhongle Hou, Liwei Gao, Dong Xiao, Xilin Hou, Changwei Zhang, Jun Yan, Lixiao Song
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9040540

Transcriptome Profiling of Ornithogalum dubium Leaves and Flowers to Identify Key Carotenoid Genes for CRISPR Gene Editing
Cited by: 9
Author(s): Zunzheng Wei, Tzahi Arazi, Nofar Hod, Matat Zohar, Tal Isaacson, Adi Doron‐Faigenboim, Noam Reznik, Iris Yedidia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3001352

The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting
Cited by: 13
Author(s): Andrew Shaw, Suzannah J. Rihn, Nardus Mollentze, Arthur Wickenhagen, Douglas G. Stewart, Richard Orton, Srikeerthana Kuchi, Siddharth Bakshi, Milagros Rodriguez Collados, Matthew L. Turnbull, Joseph Busby, Quan Gu, Katherine Smollett, Connor Bamford, Elena Sugrue, Paul C. D. Johnson, Ana Filipe da Silva, Alfredo Castelló, Daniel G. Streicker, David L. Robertson, Massimo Palmarini, Sam J. Wilson
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.3000238

Fat body–specific vitellogenin expression regulates host-seeking behaviour in the mosquito Aedes albopictus
Cited by: 22
Author(s): Jessica Dittmer, Ayad Alafndi, Paolo Gabrieli
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1007873

Inferring the immune response from repertoire sequencing
Cited by: 20
Author(s): Maximilian Puelma Touzel, Aleksandra M. Walczak, Thierry Mora
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1008045

Discovery and characterization of variance QTLs in human induced pluripotent stem cells
Cited by: 55
Author(s): Abhishek Sarkar, Po-Yuan Tung, John Blischak, Jonathan E. Burnett, Yang Li, Matthew Stephens, Yoav Gilad
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1005536

Fungal Infection Induces Sex-Specific Transcriptional Changes and Alters Sexual Dimorphism in the Dioecious Plant Silene latifolia
Cited by: 24
Author(s): Niklaus Zemp, Raquel Tavares, Alex Widmer
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1006422

Intron Lariat RNA Inhibits MicroRNA Biogenesis by Sequestering the Dicing Complex in Arabidopsis
Cited by: 68
Author(s): Ziwei Li, Shengpeng Wang, Cheng Junfeng, Chunxia Su, Zhong Songxiao, Qi Liu, Yuda Fang, Yao Yu, Hong Liu, Yun Zheng, Binglian Zheng
Software Mentions: 1
Published: almost 10 years ago

10.5334/gh.860

Implementing Fixed Dose Combination Medications for the Prevention and Control of Cardiovascular Diseases
Cited by: 16
Author(s): Ruth Webster, Adrianna Murphy, Helen Bygrave, Éimhín Ansbro, Diederick E. Grobbee, Pablo Perel
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.608641

Correlation Between Prognostic Biomarker SLC1A5 and Immune Infiltrates in Various Types of Cancers Including Hepatocellular Carcinoma
Cited by: 17
Author(s): Junsheng Zhao, Zhongli Yang, Mingmin Tu, Meng Wang, Hainv Gao, Ming D. Li, Lanjuan Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1005620

HENMT1 and piRNA Stability Are Required for Adult Male Germ Cell Transposon Repression and to Define the Spermatogenic Program in the Mouse
Cited by: 90
Author(s): Seng Han Lim, Zhibo Qu, R. Daniel Kortschak, David Lawrence, Joel Geoghegan, Anna-Lena Hempfling, Martin Bergmann, Christopher C. Goodnow, Christopher J. Ormandy, Lee H. Wong, Jeffrey R. Mann, Hamish S. Scott, Duangporn Jamsai, David L. Adelson, Moira K O'Bryan
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1005085

Natural Variation Identifies ICARUS1, a Universal Gene Required for Cell Proliferation and Growth at High Temperatures in Arabidopsis thaliana
Cited by: 34
Author(s): Weiren Zhu, Israel Ausín, Andrei Seleznev, Belén Méndez‐Vigo, F. Xavier Picó, Sridevi Sureshkumar, Vignesh Sundaramoorthi, Dieter Bulach, David Powell, Torsten Seemann, Carlos Alonso‐Blanco, Sureshkumar Balasubramanian
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1005959

MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis
Cited by: 116
Author(s): Moritz Graeff, Daniel Straub, Tenai Eguen, Ulla Dolde, Vandasue Rodrigues, Ronny Brandt, Stephan Wenkel
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1006994

Ribosomal DNA copy number amplification and loss in human cancers is linked to tumor genetic context, nucleolus activity, and proliferation
Cited by: 92
Author(s): Meng Wang, Bernardo Lemos
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1007327

Role of duplicate genes in determining the tissue-selectivity of hereditary diseases
Cited by: 31
Author(s): Ruth Barshir, Idan Hekselman, Netta Shemesh, Moran Sharon, Lena Novack, Esti Yeger-Lotem
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0253612

A community-powered search of machine learning strategy space to find NMR property prediction models
Cited by: 8
Author(s): Lars Andersen Bratholm, W. Gerrard, Brandon Anderson, Shaojie Bai, Sunghwan Choi, L. Mkrtchyan V.N. Dang, Pavel Hanchar, Addison Howard, Sang-Hoon Kim, Zico Kolter, Risi Kondor, Mordechai Kornbluth, Youhan Lee, Lee Youngsoo, Jonathan P. Mailoa, Thanh Tu Nguyen, Miloš R. Popović, Goran Rakočević, Walter Reade, Wonho Song, Luka Stojanović, Erik H. Thiede, Nebojša Tijanić, Andres Torrubia, Devin Willmott, Craig P. Butts, David R. Glowacki
Software Mentions: 1
Published: about 5 years ago

10.3389/fped.2020.587730

Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life
Cited by: 7
Author(s): Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Stephanie Lo, Chinelo Ebruke, Rebecca A. Gladstone, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P. Klugman, Robert F. Breiman, Michael R. Barer, Richard A. Adegbola, Martín Antonio, Stephen D. Bentley, Brenda Kwambana-Adams
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2020.00620

Software Tools for Model-Informed Precision Dosing: How Well Do They Satisfy the Needs?
Cited by: 58
Author(s): Wannee Kantasiripitak, Ruth Van Daele, Matthias Gijsen, Marc Ferrante, Isabel Spriet, Erwin Dreesen
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2019.00001

Pathway Based Analysis of Mutation Data Is Efficient for Scoring Target Cancer Drugs
Cited by: 93
Author(s): Marianna Zolotovskaia, Maxim Sorokin, Anna A. Emelianova, Nicolas Borisov, Denis Kuzmin, Pieter Borger, Andrew Garazha, Anton Buzdin
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0004929

The Effects of Ivermectin on Brugia malayi Females In Vitro: A Transcriptomic Approach
Cited by: 21
Author(s): Cristina Ballesteros, Lucienne Tritten, Maeghan O’Neill, Erica Burkman, Weam I. Zaky, Jianguo Xia, Andrew R. Moorhead, Steven A. Williams, Timothy G. Geary
Software Mentions: 1
Published: about 10 years ago

10.3389/fphar.2021.693167

Suppression of Inflammatory Cardiac Cytokine Network in Rats with Untreated Obesity and Pre-Diabetes by AT2 Receptor Agonist NP-6A4
Cited by: 7
Author(s): Madhavi P. Gavini, Abuzar Mahmood, Anthony Belenchia, Paige Beauparlant, Sumit Kumar, Sivakumar Ardhanari, Vincent G. DeMarco, Lakshmi Pulakat
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2019.00572

Metformin Monotherapy Downregulates Diabetes-Associated Inflammatory Status and Impacts on Mortality
Cited by: 24
Author(s): Anteneh Mehari Tizazu, Ma Shwe Zin Nyunt, Olivier Cexus, Koolarina Suku, Esther Wing Hei Mok, Chin Hui Xian, Joni Chong, Crystal Tze Ying Tan, Wilson How, Sandra Hubert, Emilie Combet, Tamàs Fülöp, Tze Pin Ng, Anis Larbi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0178189

Systematic genomic and translational efficiency studies of uveal melanoma
Cited by: 27
Author(s): Chelsea Place Johnson, Ivana K. Kim, Bita Esmaeli, Ali Amin‐Mansour, Daniel J. Treacy, Scott L. Carter, Eran Hodis, Nikhil Wagle, Sara Seepo, Xiaoxing Yu, Anne Marie Lane, Evangelos S. Gragoudas, Francisca Vázquez, Elizabeth Nickerson, Kristian Cibulskis, Aaron McKenna, Stacey Gabriel, Gad Getz, Eliezer M. Van Allen, Peter A.C. ’t Hoen, Levi A. Garraway, Scott E. Woodman
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0216294

Sensory receptor repertoire in cyprid antennules of the barnacle Balanus improvisus
Cited by: 8
Author(s): Anna Abramova, Magnus Alm Rosenblad, Anders Blomberg, Tomas Larsson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0237744

Transcriptome analysis and comparison reveal divergence between the Mediterranean and the greenhouse whiteflies
Cited by: 1
Author(s): Yujun Wang, Hua-Ling Wang, Xiaowei Wang, Shu‐Sheng Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0200826

BRD4 amplification facilitates an oncogenic gene expression program in high-grade serous ovarian cancer and confers sensitivity to BET inhibitors
Cited by: 43
Author(s): Garrett W. Rhyasen, Yi Yao, Jingwen Zhang, Austin Dulak, Lillian Castriotta, Kelly Jacques, Wei Zhao, Farzin Gharahdaghi, Maureen M. Hattersley, Paul Lyne, Edwin Clark, Michael Zinda, Stephen E. Fawell, Gordon B. Mills, Huawei Chen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0186382

Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions
Cited by: 14
Author(s): Boon Huat Cheah, Sudhir Jadhao, Madavan Vasudevan, R Wickneswari V Ratnam, Kalaivani K. Nadarajah
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2016.00105

Effect of Light Acclimation on the Organization of Photosystem II Super- and Sub-Complexes in Arabidopsis thaliana
Cited by: 47
Author(s): Ludwik W. Bielczynski, Gert Schansker, Roberta Croce
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0035961

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens
Cited by: 38
Author(s): Li Xiao, Liechi Zhang, Yang Ge, Honglin Zhu, Yulong He
Software Mentions: 1
Published: over 14 years ago

10.3389/fpls.2019.01763

Parallel Microbial Ecology of Pasteuria and Nematode Species in Scottish Soils
Cited by: 5
Author(s): Jamie Orr, Roy Neilson, Thomas E. Freitag, David M. Roberts, Keith Davies, Vivian C. Blok, Peter J. A. Cock
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0193665

Comprehensive analysis of small RNAs expressed in developing male strobili of Cryptomeria japonica
Cited by: 9
Author(s): Tokuko Ujino‐Ihara, S. Ueno, Kentaro Uchiyama, Norihiro Futamura
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0100839

Tissue-Specific Expressed Antibody Variable Gene Repertoires
Cited by: 34
Author(s): Bryan Briney, Jordan R. Willis, Jessica A. Finn, Brett A. McKinney, James E. Crowe
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0002217

Effects of Active Conductance Distribution over Dendrites on the Synaptic Integration in an Identified Nonspiking Interneuron
Cited by: 1
Author(s): Akira Takashima, Masahiro Takahata
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0183019

The need for strong clinical leaders – Transformational and transactional leadership as a framework for resident leadership training
Cited by: 50
Author(s): Barbara Saravo, Janine Netzel, Jan Kiesewetter
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2019.00279

Applications of Unmanned Aerial Vehicle Based Imagery in Turfgrass Field Trials
Cited by: 33
Author(s): Jing Zhang, Simerjeet Virk, Wesley Porter, Kevin E. Kenworthy, D. G. Sullivan, Brian M. Schwartz
Software Mentions: 1
Published: over 7 years ago