10.3389/fendo.2018.00131

Growth Hormone Overexpression Disrupts Reproductive Status Through Actions on Leptin
Cited by: 29
Author(s): Ji Chen, Mengxi Cao, Aidi Zhang, Minjun Shi, Binbin Tao, Yongming Li, Yaping Wang, Zhu Zhang, Vance L. Trudeau, Wei Hu
Software Mentions: 1
Published: over 8 years ago

10.15252/msb.202010105

Modeling glioblastoma heterogeneity as a dynamic network of cell states
Cited by: 11
Author(s): Ida Larsson, Erika Dalmo, Ramy Elgendy, Mia Niklasson, Milena Doroszko, Anna Segerman, Rebecka Jörnsten, Bengt Westermark, Sven Nelander
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41385-020-0273-y

IL-17 production by tissue-resident MAIT cells is locally induced in children with pneumonia
Cited by: 53
Author(s): Bingtai Lu, Ming Liu, Jun Wang, Huifeng Fan, Diyuan Yang, Li Zhang, Xiaoqiong Gu, Junli Nie, Zhenjun Chen, Alexandra J. Corbett, Michael J Zhan, Shengbo Zhang, Vanessa L. Bryant, Andrew M. Lew, James McCluskey, Hai‐Bin Luo, Jun Cui, Yuxia Zhang, Yifan Zhan, Gen Liu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41385-019-0248-z

Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis
Cited by: 34
Author(s): Yong Zhao, Yanni Feng, Ming Liu, Liang Chen, Qingshi Meng, Xiangfang Tang, Shukun Wang, Lei Liu, Lan Li, Wei Shen, Hongfu Zhang
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.00610

Comparative Transcriptome Analysis Reveals Molecular Basis Underlying Fast Growth of the Selectively Bred Pacific Oyster, Crassostrea gigas
Cited by: 27
Author(s): Fuqiang Zhang, Bing Hu, Huiru Fu, Zexin Jiao, Qi Li, Shikai Liu
Software Mentions: 1
Published: about 7 years ago

10.3389/fnins.2015.00123

Influx mechanisms in the embryonic and adult rat choroid plexus: a transcriptome study
Cited by: 32
Author(s): NR Saunders, Katarzyna M. Dzięgielewska, Kjeld Møllgård, Mark D. Habgood, Matthew J. Wakefield, Helen Lindsay, Nathalie Stratzielle, Jean-François Ghersi-Egea, Shane A. Liddelow
Software Mentions: 1
Published: over 11 years ago

10.1186/s12969-020-00444-7

Proceedings from the 2nd Next Gen Therapies for Systemic Juvenile Idiopathic Arthritis and Macrophage Activation Syndrome symposium held on October 3-4, 2019
Cited by: 9
Author(s): Scott Canna, Grant S. Schulert, Adriana de Jesus, Alex Pickering, Hermine I. Brunner, Massimo Gadina, Stewart J. Levine, Raphaela Goldbach‐Mansky, Jonathan Boutelle, Rashmi Sinha, Fabrizio Benedetti, Alexei A. Grom, Beth S. Gottlieb, Rae S. M. Yeung, Mona Riskalla, Sampath Prahalad, Sara Alehashemi, Shan Chandrakasan, Bas Vastert, Yuki Kimura, Anna R. Carlson, Emily Schumacher, Regina Minerva, Jonathan D. Pierce, Kate Pierce, Zulayka Martinez, Kari Cupp, Leah Bush, Wendy Costello, Vincent Delgaizo
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.8607

SCelVis: exploratory single cell data analysis on the desktop and in the cloud
Cited by: 8
Author(s): Benedikt Obermayer, Manuel Holtgrewe, Mikko Nieminen, Clemens Messerschmidt, Dieter Beule
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.722519

RNA-Sequencing in Resistant (QL3) and Susceptible (Theis) Sorghum Cultivars Inoculated With Johnsongrass Isolates of Colletotrichum sublineola
Cited by: 3
Author(s): Purushothaman Natarajan, Ezekiel Ahn, Umesh K. Reddy, Ramasamy Perumal, Louis K. Prom, Clint Magill
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.3001200

Ventricular, atrial, and outflow tract heart progenitors arise from spatially and molecularly distinct regions of the primitive streak
Cited by: 36
Author(s): Kenzo Ivanovitch, Pablo Soro-Barrio, Probir Chakravarty, Rebecca A. Jones, Donald M. Bell, S. Neda Mousavy Gharavy, Despina Stamataki, Julien Delile, James C. Smith, James Briscoe
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000585

Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer’s model of adult zebrafish brain
Cited by: 63
Author(s): Prabesh Bhattarai, Mehmet İlyas Coşacak, Violeta Mashkaryan, Sevgican Demir, Stanislava Popova, Nambirajan Govindarajan, Kerstin Brandt, Yixin Zhang, Wei‐Kuo Chang, Konstantinos Ampatzis, Çağhan Kızıl
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.01046

Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy
Cited by: 8
Author(s): Baoxing Song, Qing Sang, Hai Wang, Huimin Pei, Xiangchao Gan, Fen Wang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pcbi.1007445

SCMarker: Ab initio marker selection for single cell transcriptome profiling
Cited by: 30
Author(s): Fang Wang, Shaoheng Liang, Tapsi Kumar, Nicholas E. Navin, Ken Chen
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2018.00739

Defining Key Genes Regulating Morphogenesis of Apocrine Sweat Gland in Sheepskin
Cited by: 13
Author(s): Shaomei Li, Xin Zheng, Yangfan Nie, Wenshuo Chen, Zhiwei Liu, Yingfeng Tao, Xuewen Hu, Yong Hu, Haisheng Qiao, Quanqing Qi, Quanbang Pei, Danzhuoma Cai, Mei Yu, Chunyan Mou
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1009498

DNA methylation patterns expose variations in enhancer-chromatin modifications during embryonic stem cell differentiation
Cited by: 6
Author(s): Adi Alajem, Hava Roth, Sofia Ratgauzer, Danny Bavli, Alex Motzik, Shlomtzion Lahav, Itay Peled, Oren Ram
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00508

Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in Phytophthora infestans
Cited by: 3
Author(s): Xiaowen Wang, Jia-Lu Lv, Yaru Shi, Liyun Guo
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1009355

Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons
Cited by: 12
Author(s): Jia Li, Lei Sun, Xue-Liang Peng, Xiaoming Yu, Shao-Jun Qi, Zhi John Lu, Jing‐Dong J. Han, Qin Shen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1008630

Deconstructing cerebellar development cell by cell
Cited by: 28
Author(s): Max J. van Essen, Samuel Nayler, Esther B. E. Becker, John R. Jacob
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007589

Somatic inactivating PTPRJ mutations and dysregulated pathways identified in canine malignant melanoma by integrated comparative genomic analysis
Cited by: 46
Author(s): William P.D. Hendricks, Victoria Zismann, Karthigayini Sivaprakasam, Christophe Legendre, Kelsey Poorman, Waibhav Tembe, Nieves Perdigones, Jeffrey Kiefer, Winnie S. Liang, Valerie DeLuca, Mitchell Stark, Alison L. Ruhe, Roe E. Froman, Nicholas S. Duesbery, Megan Washington, Jessica Aldrich, Mark W. Neff, Matthew J. Huentelman, Nicholas K. Hayward, Kevin M. Brown, Douglas H. Thamm, Gerald Post, Chand Khanna, Barbara J. Davis, Matthew Breen, Aleksander Sekulic, Jeffrey M. Trent
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2020.01717

Transcriptome Analysis Revealed Inflammation Is Involved in the Impairment of Human Umbilical Vein Endothelial Cells Induced by Post-hemorrhagic Shock Mesenteric Lymph
Cited by: 5
Author(s): Qi Wang, Zhenfen Chi, Di Wei, Zhen-Ao Zhao, Hong Zhang, Limin Zhang, Yan-Xu Liu, An-Ling Kang, Meng Zhao, Peng Wang, Linghu Nie, Chun‐Yu Niu, Zi‐Gang Zhao
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0206785

Identification of grade and origin specific cell populations in serous epithelial ovarian cancer by single cell RNA-seq
Cited by: 80
Author(s): Andrew Shih, Andrew Menzin, Jill Whyte, John L. Lovecchio, Anthony Liew, Houman Khalili, Tawfiqul Bhuiya, Peter K. Gregersen, Annette T. Lee
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2019.02281

Hsa_circ_0000479 as a Novel Diagnostic Biomarker of Systemic Lupus Erythematosus
Cited by: 57
Author(s): Gangqiang Guo, Huijing Wang, Lele Ye, Xinyu Shi, Kejing Yan, Kuan‐Yu Lin, Qunjia Huang, Baoqing Li, Qiaoai Lin, Lejiang Zhu, Xiangyang Xue, Huidi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0189887

Identification of metastasis driver genes by massive parallel sequencing of successive steps of breast cancer progression
Cited by: 24
Author(s): Anne Bruun Krøigård, Martin Jakob Larsen, Anne‐Vibeke Lænkholm, Ann Knoop, Jeanette Dupont Jensen, Martin Bak, Jan Mollenhauer, Mads Thomassen, Torben A. Kruse
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0243145

Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function
Cited by: 10
Author(s): Yun Wang, Kelvin Zhang, Peter Georgiev, Steven B. Wells, Haiyan Xu, Brian M. Lacey, Zangwei Xu, Jason Laskey, Robbie L. McLeod, Joey L. Methot, Mark Bittinger, Alexander Pasternak, Sheila Ranganath
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0237529

Dysregulation of club cell biology in idiopathic pulmonary fibrosis
Cited by: 21
Author(s): Wu-Lin Zuo, Mahboubeh Rostami, Michelle G. LeBlanc, Robert J. Kaner, Sarah L. O’Beirne, Jason G. Mezey, Philip L. Leopold, Karsten Quast, Sudha Visvanathan, Jay S. Fine, Matthew Thomas, Ronald G. Crystal
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0254194

Revealing immune responses in the Mycobacterium avium subsp. paratuberculosis-infected THP-1 cells using single cell RNA-sequencing
Cited by: 3
Author(s): Hong-Tae Park, Woo Bin Park, Suji Kim, Jae Yong Lim, Gyoungju Nah, Han Sang Yoo
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0254024

Single-cell transcriptome analysis of the zebrafish embryonic trunk
Cited by: 8
Author(s): Sanjeeva Metikala, Satish Casie Chetty, Saulius Sumanas
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13174255

Tumor-Associated Microglia and Macrophages in the Glioblastoma Microenvironment and Their Implications for Therapy
Cited by: 42
Author(s): Rikke Andersen, Atul Anand, Dylan Scott Lykke Harwood, Bjarne Winther Kristensen
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers12071722

Human Plasma-Derived 3D Cultures Model Breast Cancer Treatment Responses and Predict Clinically Effective Drug Treatment Concentrations
Cited by: 10
Author(s): Kristin Calar, Simona Plesselova, Somshuvra Bhattacharya, Megan Jorgensen, Pilar de la Puente
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2021.584414

Interleukin-22 From Type 3 Innate Lymphoid Cells Aggravates Lupus Nephritis by Promoting Macrophage Infiltration in Lupus-Prone Mice
Cited by: 8
Author(s): Lingzhen Hu, Jingyi Hu, Liheng Chen, Yi Zhang, Qingqing Wang, Xuyan Yang
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13112763

HGF/c-Met Inhibition as Adjuvant Therapy Improves Outcomes in an Orthotopic Mouse Model of Pancreatic Cancer
Cited by: 5
Author(s): Tony Pang, Zhijian Xu, Alpha Raj Mekapogu, Srinivasa Pothula, Therese M. Becker, Susan M. Corley, Marc R. Wilkins, David Goldstein, Romano C. Pirola, Jeremy S. Wilson
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers12123774

GAS2L1 Is a Potential Biomarker of Circulating Tumor Cells in Pancreatic Cancer
Cited by: 9
Author(s): Lei Zhu, Kejia Kan, Johanna L. Grün, Bárbara Hissa, Cui Yang, Balázs Györffy, Sonja Loges, Christoph Reißfelder, Sebastian Schölch
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12051307

Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer
Cited by: 124
Author(s): Aimy Sebastian, Nicholas R. Hum, Kelly A. Martin, Sean F. Gilmore, Ivana Peran, Stephen W. Byers, Elizabeth K. Wheeler, Matthew A. Coleman, Gabriela G. Loots
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.00611

Inducible Bronchus-Associated Lymphoid Tissues (iBALT) Serve as Sites of B Cell Selection and Maturation Following Influenza Infection in Mice
Cited by: 37
Author(s): Hyon-Xhi Tan, Robyn Esterbauer, Hillary A. Vanderven, Jennifer A Juno, Stephen J. Kent, Adam K. Wheatley
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2020.01996

Treatment and Prevention of Lung Cancer Using a Virus-Infected Reprogrammed Somatic Cell-Derived Tumor Cell Vaccination (VIReST) Regime
Cited by: 4
Author(s): Zhe Zhang, Shuangshuang Lu, Louisa S. Chard, Zhizhong Wang, Zhenguo Cheng, Zhongxian Zhang, Wenli Yan, Yongchao Chu, Dongling Gao, Na Wang, Yang Li, Jiwei Wang, Yuenan Li, Yupei Ji, Danyang Shan, Keke Li, Panpan Wang, Yiqiao Dong, Jianzeng Dong, Nick R. Lemoine, Duanqing Pei, Lirong Zhang, Yaohe Wang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cell.2017.11.036

Initiation of Antiviral B Cell Immunity Relies on Innate Signals from Spatially Positioned NKT Cells
Cited by: 124
Author(s): Mauro Gaya, Patricia Barral, Marianne Burbage, Shweta Aggarwal, Beatriz Montaner, Andrew W. Navia, Malika Aïd, C. Kimberly Tsui, Paula Maldonado, Usha Nair, Khader Ghneim, Padraic G. Fallon, Rafick‐Pierre Sékaly, Dan H. Barouch, Alex K. Shalek, Andreas Bruckbauer, Jessica Strid, Facundo D. Batista
Software Mentions: 1
Published: over 8 years ago

10.1186/s13578-021-00549-w

Single‐cell transcriptomic landscape reveals the differences in cell differentiation and immune microenvironment of papillary thyroid carcinoma between genders
Cited by: 17
Author(s): Miaoguan Peng, Guohong Wei, Yunjian Zhang, Hai Li, Yingrong Lai, Yan Guo, Yuxin Chen, Liehua Liu, Hang Xiao, Hongyu Guan, Yanbing Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s13578-021-00562-z

Single-cell transcriptomic analysis of eutopic endometrium and ectopic lesions of adenomyosis
Cited by: 23
Author(s): Yong Li, Zhonghua Sun, Hongyun Liu, Weipin Niu, Xin Wang, Na Liang, Yanfei Wang, Yaxin Shi, Li Xu, Shi We
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.00916

Methane Dynamics in a Tropical Serpentinizing Environment: The Santa Elena Ophiolite, Costa Rica
Cited by: 51
Author(s): Melitza Crespo‐Medina, Katrina I. Twing, Ricardo Sánchez‐Murillo, William J. Brazelton, T. M. McCollom, M. O. Schrenk
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.02754

The Transcription Factor ArcA Modulates Salmonella’s Metabolism in Response to Neutrophil Hypochlorous Acid-Mediated Stress
Cited by: 8
Author(s): Coral Pardo-Esté, Juan Castro‐Severyn, Gabriel I. Krüger, Carolina Cabezas, Alan C. Briones, Camila Aguirre, Naiyulin Morales, María Soledad Baquedano, Yoelvis Noe Sulbaran, Alejandro A. Hidalgo, Claudio Meneses, Ignacio Poblete‐Castro, Eduardo Castro-Nallar, Miguel A. Valvano, Claudia P. Saavedra
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-020-02787-1

High-dimensional single-cell analysis delineates radiofrequency ablation induced immune microenvironmental remodeling in pancreatic cancer
Cited by: 32
Author(s): Qinglin Fei, Yu Pan, Wentao Lin, Yuanyuan Zhou, Xingxing Yu, Zelin Hou, Xunbin Yu, Xianchao Lin, Ronggui Lin, Fang Lü, Hongdan Guan, Heguang Huang
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.00521

The LuxR Regulators PcoR and RfiA Co-regulate Antimicrobial Peptide and Alginate Production in Pseudomonas corrugata
Cited by: 15
Author(s): Grazia Licciardello, A. Caruso, P. Bella, Rodolpho Gheleri, C. P. Strano, Alice Anzalone, Emmanouil Trantas, Panagiotis F. Sarris, Nalvo F. Almeida, Vittoria Catara
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.01987

Transcriptomic Changes in Response to Putrescine Production in Metabolically Engineered Corynebacterium glutamicum
Cited by: 15
Author(s): Zhen Li, Jianzhong Liu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-020-02871-6

XJB-5-131 inhibited ferroptosis in tubular epithelial cells after ischemia−reperfusion injury
Cited by: 103
Author(s): Zhi Zhao, Jianzhong Wu, Huzi Xu, Cheng Zhou, Bicui Han, Han Zhu, Zhizhi Hu, Zhimei Ma, Zhang-Yin Ming, Ying Yao, Rui Zeng, Gang Xu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41420-021-00403-5

Single-cell analysis reveals the intra-tumor heterogeneity and identifies MLXIPL as a biomarker in the cellular trajectory of hepatocellular carcinoma
Cited by: 19
Author(s): Xiao Dong, Fan Wang, Chuan Liu, Ling Jing, Xiaohong Jia, Feifei Shen, Ning Yang, Sibo Zhu, Lin Zhong, Qi Li
Software Mentions: 1
Published: over 5 years ago

10.1038/s41421-021-00300-2

Integrated single-cell analysis revealed immune dynamics during Ad5-nCoV immunization
Cited by: 18
Author(s): Qiqi Cao, Shipo Wu, Chuan-Le Xiao, Shuzhen Chen, Xiangyang Chi, Xiuliang Cui, Hao Tang, Wenru Su, Jiayong Zhong, Zhaomin Li, Fang Li, Haijia Chen, Lihua Hou, Hongyang Wang, Wen Wen
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.672661

pH Changes Have a Profound Effect on Gene Expression, Hydrolytic Enzyme Production, and Dimorphism in Saccharomycopsis fibuligera
Cited by: 1
Author(s): Mohamed El-Agamy Farh, Najib Abdellaoui, Jeong‐Ah Seo
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00825

Tachyplesin Causes Membrane Instability That Kills Multidrug-Resistant Bacteria by Inhibiting the 3-Ketoacyl Carrier Protein Reductase FabG
Cited by: 23
Author(s): Cunbao Liu, Jialong Qi, Bin Shu, Yanbing Ma
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.01905

N4-Cytosine DNA Methylation Is Involved in the Maintenance of Genomic Stability in Deinococcus radiodurans
Cited by: 20
Author(s): Shengjie Li, Jianling Cai, Haijun Lu, Shuyu Mao, Shang Dai, Jing Hu, Liangyan Wang, Xiaoting Hua, Hong Xu, Bing Teng, Ye Zhao, Yuejin Hua
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.02635

Enhanced Expression of Pullulanase in Bacillus subtilis by New Strong Promoters Mined From Transcriptome Data, Both Alone and in Combination
Cited by: 20
Author(s): Fanqiang Meng, Xiaoyu Zhu, Ting Nie, Feng Lü, Xiaomei Bie, Yingjian Lu, Frances Trouth, Zhaoxin Lu
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41423-020-00615-2

A novel CD4+ CTL subtype characterized by chemotaxis and inflammation is involved in the pathogenesis of Graves’ orbitopathy
Cited by: 27
Author(s): Yue Wang, Ziyi Chen, Ting-Jie Wang, Hui Guo, Yufeng Liu, Ningxin Dang, Shiqian Hu, Liping Wu, Chengsheng Zhang, Kai Ye, Bingyin Shi
Software Mentions: 1
Published: over 5 years ago

10.1111/cpr.13046

Intrapulmonary distal airway stem cell transplantation repairs lung injury in chronic obstructive pulmonary disease
Cited by: 6
Author(s): Xiaofan Wang, Yu Zhao, Dandan Li, Yun Feng, Yusang Xie, Yueqing Zhou, Min Zhou, Yujia Wang, Qu Jian, Wei Zuo
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2020.108566

Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing
Cited by: 61
Author(s): Carman Man-Chung Li, Hana Kobayashi Shapiro, Christina Tsiobikas, Laura M. Selfors, Huidong Chen, Jennifer M. Rosenbluth, Kaitlin Moore, K. Gupta, G. Kenneth Gray, Yaara Oren, Michael J. Steinbaugh, Jennifer L. Guerriero, Luca Pinello, Aviv Regev, Joan S. Brugge
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.00942

The Hybrid Strategy of Thermoactinospora rubra YIM 77501T for Utilizing Cellulose as a Carbon Source at Different Temperatures
Cited by: 7
Author(s): Yi-Rui Yin, Zhen Meng, Qingwen Hu, Jiuran Zhao, Wen-Dong Xian, Linhua Li, Wei Hu, Feng Zhang, En‐Min Zhou, Xiao‐Yang Zhi, Wenjun Li
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.01978

Enzyme-Mediated Quenching of the Pseudomonas Quinolone Signal (PQS) Promotes Biofilm Formation of Pseudomonas aeruginosa by Increasing Iron Availability
Cited by: 22
Author(s): Beatrix Tettmann, Christine Niewerth, Frank Kirschhöfer, Anke Neidig, Andreas Dötsch, Gerald Brenner–Weiß, Susanne Fetzner, J. Marc Overhage
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2018.03222

Diallyl Disulfide From Garlic Oil Inhibits Pseudomonas aeruginosa Quorum Sensing Systems and Corresponding Virulence Factors
Cited by: 25
Author(s): Wen-Ru Li, Yun‐Bao Ma, Xiao‐Bao Xie, Qingshan Shi, Wen Xu, Tairen Sun, Hong Peng
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2018.09.006

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution
Cited by: 183
Author(s): Jeffrey B. Cheng, Andrew J. Sedgewick, Alex I Finnegan, Paymann Harirchian, Jerry Lee, Sunjong Kwon, Marlys S. Fassett, Justin Golovato, Matthew A. Gray, Ruby Ghadially, Wilson Liao, Bethany E. Perez White, Theodora M. Mauro, Thaddeus W. Mully, Esther A. Kim, Hani Sbitany, Isaac M. Neuhaus, Roy C. Grekin, Siegrid S. Yu, Joe W. Gray, Elizabeth Purdom, Ralf Paus, Charles J. Vaske, Stephen C. Benz, Jun S. Song, Raymond J. Cho
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2018.04.066

Combining NGN2 Programming with Developmental Patterning Generates Human Excitatory Neurons with NMDAR-Mediated Synaptic Transmission
Cited by: 151
Author(s): Ralda Nehme, Emanuela Zuccaro, Sulagna Ghosh, Chenchen Li, J. L. Sherwood, Olli Pietiläinen, Lindy E. Barrett, Francesco Limone, Kathleen A. Worringer, Sravya Kommineni, Ying Zang, Davide Cacchiarelli, Alex Meissner, Rolf Adolfsson, Stephen J. Haggarty, Jon M. Madison, Matthias Müller, Paola Arlotta, Zhanyan Fu, Guoping Feng, Kevin Eggan
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.00274

A Small Regulatory RNA Contributes to the Preferential Colonization of Escherichia coli O157:H7 in the Large Intestine in Response to a Low DNA Concentration
Cited by: 13
Author(s): Richou Han, Letian Xu, Ting Wang, Bin Liu, Lei Wang
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.598478

Genetic and Functional Diversity of Pseudomonas aeruginosa in Patients With Chronic Obstructive Pulmonary Disease
Cited by: 7
Author(s): Kelei Zhao, Ting Huang, Jiafu Lin, Chaochao Yan, Lianming Du, Tao Song, Jing Li, Yidong Guo, Yiwen Chu, Junfeng Deng, Xinrong Wang, Chaolan Liu, Yingshun Zhou
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41422-020-00460-y

AXL is a candidate receptor for SARS-CoV-2 that promotes infection of pulmonary and bronchial epithelial cells
Cited by: 320
Author(s): Shuai Wang, Zongyang Qiu, Yingnan Hou, Xiya Deng, Wei Xu, Tianhang Zheng, Peihan Wu, Shaofang Xie, Weixiang Bian, Chong Zhang, Zewei Sun, Kunpeng Liu, Chao Shan, Aifu Lin, Shibo Jiang, Youhua Xie, Qiang Zhou, Lu Lu, Jing Huang, Xu Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.541451

Sulfamethoxazole-Altered Transcriptomein Green Alga Raphidocelis subcapitata Suggests Inhibition of Translation and DNA Damage Repair
Cited by: 9
Author(s): Jiahua Guo, Hongjie Zhang, Jiezhang Mo, Haotian Sun, Qi Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.607431

Functional Analysis of the NucS/EndoMS of the Hyperthermophilic Archaeon Sulfolobus islandicus REY15A
Cited by: 6
Author(s): Sohail Ahmad, Qihong Huang, Jinfeng Ni, Yuanxi Xiao, Yunlei Yang, Yulong Shen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00155

Enterococcus faecalis Adapts to Antimicrobial Conjugated Oligoelectrolytes by Lipid Rearrangement and Differential Expression of Membrane Stress Response Genes
Cited by: 11
Author(s): Gayatri Shankar Chilambi, Jamie Hinks, Artur Matysik, Xinyi Zhu, Pei Yi Choo, Xianghui Liu, Mary B. Chan-Park, Guillermo C. Bazan, Kimberly Kline, Scott A. Rice
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.00238

The Small RNA ErsA of Pseudomonas aeruginosa Contributes to Biofilm Development and Motility through Post-transcriptional Modulation of AmrZ
Cited by: 26
Author(s): Falcone Marilena, Silvia Ferrara, Elio Rossi, Helle Krogh Johansen, Søren Molin, Giovanni Bertoni
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.01832

BcRPD3-Mediated Histone Deacetylation Is Involved in Growth and Pathogenicity of Botrytis cinerea
Cited by: 10
Author(s): Ning Zhang, Zhenzhou Yang, Zhonghua Zhang, Wenxing Liang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41422-020-0391-9

Dysregulated adaptive immune response contributes to severe COVID-19
Cited by: 59
Author(s): Kuai Yu, Jingjing He, Yongjian Wu, Baosong Xie, Xuefei Liu, Bo Wei, Haibo Zhou, Bingliang Lin, Zhixiang Zuo, Wen Wen, Wenxiong Xu, Bin Zou, Lai Wei, Xi Huang, Penghui Zhou
Software Mentions: 1
Published: about 6 years ago

10.1038/s41422-019-0228-6

Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing
Cited by: 123
Author(s): Yang Zeng, Jian He, Zhijie Bai, Zongcheng Li, Yandong Gong, Chen Liu, Yanli Ni, Junjie Du, Chunyu Ma, Lihong Bian, Yu Lan, Bing Liu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.653354

Transcriptome Analysis Revealed Overlapping and Special Regulatory Roles of RpoN1 and RpoN2 in Motility, Virulence, and Growth of Xanthomonas oryzae pv. oryzae
Cited by: 3
Author(s): Chao Yu, Doan-Phuong Nguyen, Fenghuan Yang, Jianbin Shi, Yifei Wei, Fang Tian, Xing‐Ming Zhao, Huamin Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.01525

Control of Virulence Gene Expression by the Master Regulator, CfaD, in the Prototypical Enterotoxigenic Escherichia coli Strain, H10407
Cited by: 6
Author(s): Carla Hodson, Jiyeon Yang, Dianna M Hocking, Kristy Azzopardi, Qianyu Chen, Jessica K. Holien, Michael W. Parker, Marija Tauschek, Roy M. Robins-Browne
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.00935

Transcriptome Analysis Uncovers a Link Between Copper Metabolism, and Both Fungal Fitness and Antifungal Sensitivity in the Opportunistic Yeast Candida albicans
Cited by: 17
Author(s): Inès Khemiri, Faïza Tebbji, Adnane Sellam
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.01390

Mechanisms for Rapid Evolution of Carbapenem Resistance in a Clinical Isolate of Pseudomonas aeruginosa
Cited by: 15
Author(s): Congjuan Xu, Dan Wang, Xinxin Zhang, Huimin Liu, Guangbo Zhu, Tong Wang, Zhihui Cheng, Weihui Wu, Fang Bai, Yongxin Jin
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.00251

Chryseobacterium lacus sp. nov. Isolated From the Surface Water of Two Lakes With Light-Induced Carotenoid Production
Cited by: 9
Author(s): Jing Zhang, Canzhu Gao, Xin Yu, He-Yuan Lun, Zong‐Jun Du
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10082033

Improving In Vitro Culture of Human Male Fetal Germ Cells
Cited by: 5
Author(s): Myriam Martin-Inaraja, Mónica Ferreira, Jasin Taelman, Cristina Eguizábal, Susana M. Chuva de Sousa Lopes
Software Mentions: 1
Published: about 5 years ago

10.3390/cells10092265

Loss of Ubiquitin Carboxy-Terminal Hydrolase L1 Impairs Long-Term Differentiation Competence and Metabolic Regulation in Murine Spermatogonial Stem Cells
Cited by: 11
Author(s): Whitney Alpaugh, Anna Voigt, Rkia Dardari, Lin Su, Iman Al Khatib, Wisoo Shin, Taylor Goldsmith, Krysta M. Coyle, Lin Tang, Timothy E. Shutt, Claudia Klein, Jeff Biernaskie, Ina Dobrinski
Software Mentions: 1
Published: almost 5 years ago

10.3389/fneur.2019.00036

LncRNA Expression Profiling of Ischemic Stroke During the Transition From the Acute to Subacute Stage
Cited by: 22
Author(s): Wenjiao Zhu, Lili Tian, Xuanye Yue, Jingyi Liu, Ying Fu, Yaping Yan
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2015.00016

The inner CSF–brain barrier: developmentally controlled access to the brain via intercellular junctions
Cited by: 85
Author(s): Sophie C. Whish, Katarzyna M. Dzięgielewska, Kjeld Møllgård, Natassya M. Noor, Shane A. Liddelow, Mark D. Habgood, Samantha J. Richardson, NR Saunders
Software Mentions: 1
Published: over 11 years ago

10.3390/cells9020438

Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations
Cited by: 31
Author(s): Andrew P. Voigt, Elaine M. Binkley, Miles J. Flamme-Wiese, Siyuan Zeng, Adam P. DeLuca, Todd E. Scheetz, Budd A. Tucker, Robert F. Mullins, Edwin M. Stone
Software Mentions: 1
Published: over 6 years ago

10.1161/CIRCULATIONAHA.120.044581

Cross-Priming Dendritic Cells Exacerbate Immunopathology After Ischemic Tissue Damage in the Heart
Cited by: 40
Author(s): Elvira Forte, Bryant Perkins, Amalia Sintou, Harkaran Kalkat, Angelos Papanikolaou, C.N.J. Jenkins, Mashael Alsubaie, Rasheda A. Chowdhury, Theodore M. Duffy, Daniel A. Skelly, Jane Branca, Mohamed Bellahcene, Michael Schneider, Siân E. Harding, Milena B. Furtado, Fu Siong Ng, Muneer G. Hasham, Nadia Rosenthal, Susanne Sattler
Software Mentions: 1
Published: over 5 years ago

10.1002/cti2.1308

No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID‐19 disease
Cited by: 5
Author(s): José Alquicira-Hernández, Joseph E. Powell, Tri Giang Phan
Software Mentions: 1
Published: over 5 years ago

10.1002/cti2.1221

ISG15 protects human Tregs from interferon alpha‐induced contraction in a cell‐intrinsic fashion
Cited by: 6
Author(s): Ilenia Pacella, Francesca Romana Spinelli, Martina Severa, Eleonora Timperi, Gloria Tucci, Marta Zagaglioni, Fulvia Ceccarelli, Fabiana Rizzo, Eliana M. Coccia, Roosheel Patel, Marta Martín-Fernández, Fabrizio Conti, Vincenzo Barnaba, Silvia Piconese
Software Mentions: 1
Published: over 6 years ago

10.1002/cti2.1191

Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy
Cited by: 31
Author(s): Lisa M. Ebert, Wenbo Yu, Tessa Gargett, John Toubia, Paris M Kollis, Melinda N Tea, Brenton Ebert, Cédric Bardy, Mark van den Hurk, Claudine S. Bonder, Jim Manavis, Kathleen S. Ensbey, Mariana Oksdath Mansilla, Kaitlin G. Scheer, Sally L. Perrin, Rebecca J. Ormsby, Santosh Poonnoose, Barbara Koszyca, Stuart M. Pitson, Bryan W. Day, Guillermo A. Gómez, Michael P. Brown
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2020.00104

Heterozygous p53-R280T Mutation Enhances the Oncogenicity of NPC Cells Through Activating PI3K-Akt Signaling Pathway
Cited by: 8
Author(s): Zhenqi Qin, Qiguang Li, Hong Yi, Shanshan Lu, Wei Huang, Zhuoxian Rong, Yurong Tang, Zhi‐Qiang Xiao
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2015.00191

Disseminated Medulloblastoma in a Child with Germline BRCA2 6174delT Mutation and without Fanconi Anemia
Cited by: 16
Author(s): Jingying Xu, Ashley Margol, Anju Shukla, Xiuhai Ren, Jonathan L. Finlay, Mark D. Krieger, Floyd H. Gilles, Fergus J. Couch, Meraj Aziz, Eric T. Fung, Shahab Asgharzadeh, Michael T. Barrett, Anat Erdreich‐Epstein
Software Mentions: 1
Published: about 11 years ago

10.3389/fped.2021.660482

Neuropilin-2 Is Associated With Increased Hepatoblastoma Cell Viability and Motility
Cited by: 2
Author(s): Katja Eloranta, Ruth Nousiainen, Stefano Cairo, Mikko P. Pakarinen, David B. Wilson, Marjut Pihlajoki, Markku Heikinheimo
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-021-02571-7

Generation and characterization of cardiac valve endothelial-like cells from human pluripotent stem cells
Cited by: 12
Author(s): Linxi Cheng, Minghui Xie, Weihua Qiao, Yu Song, YanYong Zhang, Yingchao Geng, Weilin Xu, Lin Wang, Zheng Wang, Kai Huang, Nianguo Dong, Yuhua Sun
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphar.2020.01183

Genetic Profiles Affect the Biological Effects of Serine on Gastric Cancer Cells
Cited by: 3
Author(s): Jun Li, Hongzhang Xue, Zhen Xiang, Shuzheng Song, Ranlin Yan, Jun Ji, Zhenggang Zhu, Chaochun Wei, Yingyan Yu
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2018.00312

Tnfrsf12a-Mediated Atherosclerosis Signaling and Inflammatory Response as a Common Protection Mechanism of Shuxuening Injection Against Both Myocardial and Cerebral Ischemia-Reperfusion Injuries
Cited by: 26
Author(s): Ming Lyu, Ying Cui, Ting Zhao, Zhaochen Ning, Jie Ren, Xingpiao Jin, Guanwei Fan, Yan Zhu
Software Mentions: 1
Published: over 8 years ago

10.1038/s42003-021-02522-2

Distinct immune microenvironment profiles of therapeutic responders emerge in combined TGFβ/PD-L1 blockade-treated squamous cell carcinoma
Cited by: 11
Author(s): Alexander A. Strait, Rachel A. Woolaver, Spencer Hall, Christian D. Young, Sana D. Karam, Antonio Jimeno, Yan Lan, David Raben, Jing H. Wang, Xiaojing Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2019.00302

Transcriptome Profiling of the Whitefly Bemisia tabaci MED in Response to Single Infection of Tomato yellow leaf curl virus, Tomato chlorosis virus, and Their Co-infection
Cited by: 27
Author(s): Tian-Bo Ding, Jie Li, Er-Hu Chen, Jinzhi Niu, Dong Chu
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-020-0922-4

Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming
Cited by: 212
Author(s): Llorenç Solé-Boldo, Günter Raddatz, Sabrina Schütz, Jan‐Philipp Mallm, Karsten Rippe, Anke S. Lonsdorf, Manuel Rodríguez-Paredes, Frank Lyko
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2020.582505

A Transcriptomic and Proteomic Analysis of the Diaphorina citri Salivary Glands Reveals Genes Responding to Candidatus Liberibacter asiaticus
Cited by: 7
Author(s): Xiaoqiang Liu, Hong‐Bo Jiang, Tianyuan Liu, Li Yang, Jiaqi Fan, Ying Xiong, Tian‐Xing Jing, Binghai Lou, Wei Dou, Jinjun Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2020.00487

Performance and Transcriptional Response of the Green Peach Aphid Myzus persicae to the Restriction of Dietary Amino Acids
Cited by: 2
Author(s): Jun Wu, Hao Lan, Zhan-Feng Zhang, He‐He Cao, Tong‐Xian Liu
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-021-01763-5

βA1-crystallin regulates glucose metabolism and mitochondrial function in mouse retinal astrocytes by modulating PTP1B activity
Cited by: 9
Author(s): Sayan Ghosh, Haitao Liu, Meysam Yazdankhah, Nadezda A. Stepicheva, Peng Shang, Tanuja Vaidya, Stacey Hose, Urvi Gupta, Michael Calderon, Ming Hu, Archana Padmanabhan Nair, Joseph Weiss, Christopher Scott Fitting, Imran Ahmed Bhutto, Santosh Gopi Krishna Gadde, Naveen Kumar Naik, Chaitra Jaydev, Gerard A. Lutty, James T. Handa, Ashwath Jayagopal, Jiang Qian, J Sahel, Dhivyaa Rajasundaram, Yuri V. Sergeev, J. Samuel Zigler, Swaminathan Sethu, Simon C. Watkins, Arkasubhra Ghosh, Debasish Sinha
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-1083-1

Absence of central tolerance in Aire-deficient mice synergizes with immune-checkpoint inhibition to enhance antitumor responses
Cited by: 4
Author(s): Asiel A. Benitez, Sara Khalil-Agüero, Anjali Nandakumar, Namita Gupta, Wen Zhang, Gurinder S. Atwal, Andrew J. Murphy, Matthew A. Sleeman, Sokol Haxhinasto
Software Mentions: 1
Published: about 6 years ago

10.3389/fphys.2019.00212

Identification of Functional Gene Modules Associated With STAT-Mediated Antiviral Responses to White Spot Syndrome Virus in Shrimp
Cited by: 8
Author(s): Guijin Zhu, Shihao Li, Jun Wu, Fuhua Li, Xing‐Ming Zhao
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2021.650972

Precocious Metamorphosis of Silkworm Larvae Infected by BmNPV in the Latter Half of the Fifth Instar
Cited by: 3
Author(s): Peng Xu, Meirong Zhang, Xue-Yang Wang, Yueming Wu
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-01167-x

Maximizing transcription of nucleic acids with efficient T7 promoters
Cited by: 30
Author(s): Thomas Conrad, Izabela Plumbom, Maria Alcobendas, Ramón Vidal, Sascha Sauer
Software Mentions: 1
Published: about 6 years ago

10.1038/s42003-020-0808-5

Investigating cone photoreceptor development using patient-derived NRL null retinal organoids
Cited by: 58
Author(s): Alyssa Kallman, Elizabeth E. Capowski, Jie Wang, Aniruddha M. Kaushik, Alex D. Jansen, Kimberly L. Edwards, Liben Chen, Cynthia Berlinicke, M. Joseph Phillips, Eric A. Pierce, Jiang Qian, Tza Huei Wang, David M. Gamm, Donald J. Zack
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2020.106657

Single cell RNA-sequencing data generated from human pluripotent stem cell-derived lens epithelial cells
Cited by: 2
Author(s): Rachel A Shparberg, Chitra Umala Dewi, Vikkitharan Gnanasambandapillai, Liwan Liyanage, Michael D. O’Connor
Software Mentions: 1
Published: over 5 years ago