10.17912/micropub.biology.000230

Loss of fuss in Drosophila melanogaster results in decreased locomotor activity due to an increased number of pauses.
Cited by: 1
Author(s): Mathias Raß, Svenja Oestreich, Ardi Manaj, Stephan Schneuwly
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-019-0676-8

Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status
Cited by: 44
Author(s): Hazem Sharaf, Richard R. Rodrigues, Jin-Young Moon, Bo Zhang, Kerri Mills, Mark A. Williams
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-69608-5

Anti-nucleosome antibodies increase the risk of renal relapse in a prospective cohort of patients with clinically inactive systemic lupus erythematosus
Cited by: 7
Author(s): Norma Alejandra Rodriguez-Jimenez, Edsaúl Emilio Pérez-Guerrero, Jorge I. Gámez-Nava, Dalia Sanchez-Mosco, Ana Miriam Saldaña-Cruz, Miriam Fabiola Alcaraz-López, Nicte Selene Fajardo-Robledo, José Francisco Muñoz‐Valle, David Bonilla-Lara, Valeria Díaz-Rizo, Laura González-López
Software Mentions: 3
Published: about 6 years ago

10.1038/s41379-020-0640-y

Artificial intelligence assistance significantly improves Gleason grading of prostate biopsies by pathologists
Cited by: 74
Author(s): Wouter Bulten, Maschenka Balkenhol, Jean-Joël Awoumou Belinga, Américo Brilhante, Aslı Çakir, Lars Egevad, Martin Eklund, Xavier Farré, Katerina Geronatsiou, Vincent Molinié, Guilherme Martins Pereira, Paromita Roy, Günter Saile, Paulo G. O. Salles, Ewout Schaafsma, Joëlle Tschui, Anne-Marie Vos, ISUP Pathology Imagebase Expert Panel, Hester van Boven, Robert Vink, Jeroen van der Laak, Christina Hulsbergen-van der Kaa, Geert Litjens, Brett Delahunt, Hemamali Samaratunga, David J. Grignon, Andrew Evans, Daniel M. Berney, Chin-Chen Pan, Glen Kristiansen, James G. Kench, Jon Oxley, Kátia Ramos Moreira Leite, Jesse K. McKenney, Peter A. Humphrey, Samson W. Fine, Toyonori Tsuzuki, Murali Varma, Ming Zhou, Éva Compérat, David G. Bostwick, Kenneth A. Iczkowski, Cristina Magi‐Galluzzi, John R. Srigley, Hiroyuki Takahashi, Theo van der Kwast
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2288-11-61

Network meta-analysis of survival data with fractional polynomials
Cited by: 107
Author(s): Jeroen P. Jansen
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pgen.1009542

Genome-wide proximity between RNA polymerase and DNA topoisomerase I supports transcription in Streptococcus pneumoniae
Cited by: 7
Author(s): Marı́a José Ferrándiz, Pablo Hernández, Adela G. de la Campa
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0251073

Risk-taking unmasked: Using risky choice and temporal discounting to explain COVID-19 preventative behaviors
Cited by: 26
Author(s): Kaileigh A. Byrne, Stephanie G. Six, Reza Ghaiumy Anaraky, Maggie W. Harris, Emma Winterlind
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2016.00901

Reconstruction of the High-Osmolarity Glycerol (HOG) Signaling Pathway from the Halophilic Fungus Wallemia ichthyophaga in Saccharomyces cerevisiae
Cited by: 8
Author(s): Tilen Konte, Ulrich Terpitz, Ana Plemenitaš
Software Mentions: 3
Published: about 10 years ago

10.3389/fninf.2018.00046

Reproducing Polychronization: A Guide to Maximizing the Reproducibility of Spiking Network Models
Cited by: 32
Author(s): Roman Pauli, Philipp Weidel, Susanne Kunkel, Abigail Morrison
Software Mentions: 3
Published: about 8 years ago

10.3389/fphys.2018.00787

Prediction of Mutations to Control Pathways Enabling Tumor Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)
Cited by: 9
Author(s): Nicolas Levy, Aurélien Naldi, Céline Hernandez, Gautier Stoll, Denis Thieffry, Andreï Zinovyev, Laurence Calzone, Loı̈c Paulevé
Software Mentions: 3
Published: about 8 years ago

10.1002/1878-0261.13041

Characterization of fragment sizes, copy number aberrations and 4‐mer end motifs in cell‐free DNA of hepatocellular carcinoma for enhanced liquid biopsy‐based cancer detection
Cited by: 10
Author(s): Chao Jin, Xiaonan Liu, Wenyuan Zheng, Liping Su, Liu Yang, Xu Guo, Xiaoming Gu, Hongping Li, Bo Xu, Gang Wang, Jing Yu, Qiong Zhang, Dan Bao, Shaogui Wan, Fei Xu, Xiaohuan Lai, Jiayun Liu, Jinliang Xing
Software Mentions: 3
Published: about 5 years ago

10.3390/toxins13080555

The Allosteric Activation of α7 nAChR by α-Conotoxin MrIC Is Modified by Mutations at the Vestibular Site
Cited by: 5
Author(s): Alican Gulsevin, Roger L. Papke, Clare Stokes, Hue N. T. Tran, Aihua Jin, Irina Vetter, Jens Meiler
Software Mentions: 3
Published: about 5 years ago

10.3390/pathogens10020242

An Integrated Sequencing Approach for Updating the Pseudorabies Virus Transcriptome
Cited by: 8
Author(s): Gábor Torma, Dóra Tombácz, Zsolt Csabai, Dániel Göbhardter, Zoltán Deim, M Snyder, Zsolt Boldogkői
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/5963868

Identification and Prognostic Value Exploration of Radiotherapy Sensitivity-Associated Genes in Non-Small-Cell Lung Cancer
Cited by: 6
Author(s): Qing Ma, Kai Geng, Ping Xiao, Lili Zeng
Software Mentions: 3
Published: almost 5 years ago

10.3390/v13030509

Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals
Cited by: 13
Author(s): Ketaki Ganti, Anish Bagga, Juliana DaSilva, Samuel S. Shepard, John Barnes, Susan A. Shriner, Katia Koelle, Anice C. Lowen
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0257305

Effects of blood urea nitrogen independent of the estimated glomerular filtration rate on the development of anemia in non-dialysis chronic kidney disease: The results of the KNOW-CKD study
Cited by: 4
Author(s): Hyo Jin Kim, Tae Eun Kim, Miyeun Han, Yongin Yi, Jong Cheol Jeong, Ho Jun Chin, Sang Heon Song, Joongyub Lee, Kyu‐Beck Lee, Suah Sung, Seung Hyeok Han, Eun Young Seong, Curie Ahn, Kook‐Hwan Oh, Dong‐Wan Chae
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0218372

Using flexible methods to determine risk factors for ventilator-associated pneumonia in the Netherlands
Cited by: 5
Author(s): Tjallie van der Kooi, Hendriek C. Boshuizen, Jan Wille, Sabine C. de Greeff, Jaap T. van Dissel, Annelot F. Schoffelen, Rolina D. van Gaalen
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-019-2892-4

MHCSeqNet: a deep neural network model for universal MHC binding prediction
Cited by: 48
Author(s): Poomarin Phloyphisut, Natapol Pornputtapong, Sira Sriswasdi, Ekapol Chuangsuwanich
Software Mentions: 3
Published: about 7 years ago

10.3390/biom11030458

A Molecular Modeling Approach to Identify Potential Antileishmanial Compounds Against the Cell Division Cycle (cdc)-2-Related Kinase 12 (CRK12) Receptor of Leishmania donovani
Cited by: 18
Author(s): Emmanuel Broni, Samuel K. Kwofie, Seth O. Asiedu, Whelton A. Miller, Michael D. Wilson
Software Mentions: 3
Published: over 5 years ago

10.1186/1751-0473-8-3

FCC – An automated rule-based processing tool for life science data
Cited by: 17
Author(s): Simon Barkow-Oesterreicher, Can Türker, Christian Panse
Software Mentions: 3
Published: over 13 years ago

10.1107/S160057752000778X

A ray-tracing algorithm for <i>ab initio</i> calculation of thermal load in undulator-based synchrotron beamlines
Cited by: 7
Author(s): Luca Rebuffi, Xianbo Shi, Manuel Sánchez del Río, R. Reininger
Software Mentions: 3
Published: about 6 years ago

10.1111/acel.12772

Metformin directly targets the H3K27me3 demethylase KDM6A/UTX
Cited by: 56
Author(s): Elisabet Cuyàs, Sara Verdura, Laura Llorach-Parés, Salvador Fernández-Arroyo, Fedra Luciano-Mateo, Noemí Cabré, Jan Štursa, Lukáš Werner, Begoña Martín-Castillo, Benoı̂t Viollet, Jiřı́ Neužil, Jorge Joven, Alfons Nonell-Canals, Melchor Sánchez-Martínez, Javier A. Menendez
Software Mentions: 3
Published: over 8 years ago

10.3389/fmicb.2018.01192

Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources
Cited by: 24
Author(s): Paula B. Matheus Carnevali, Craig W. Herbold, K. P. Hand, John C. Priscu, Alison E. Murray
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0195798

Automatic lesion detection and segmentation of 18F-FET PET in gliomas: A full 3D U-Net convolutional neural network study
Cited by: 105
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Niklaus Schaefer, Emmanuel Itti, John O. Prior
Software Mentions: 3
Published: over 8 years ago

10.3390/jcm10050978

Risk of Metabolic Syndrome in Kidney Stone Formers: A Comparative Cohort Study with a Median Follow-Up of 19 Years
Cited by: 9
Author(s): Robert Geraghty, Paul Cook, Paul Roderick, Bhaskar Somani
Software Mentions: 3
Published: over 5 years ago

10.1016/j.patter.2020.100013

Random Forest Models for Accurate Identification of Coordination Environments from X-Ray Absorption Near-Edge Structure
Cited by: 40
Author(s): Zheng Chen, Chi Chen, Yiming Chen, Shyue Ping Ong
Software Mentions: 3
Published: over 6 years ago

10.3390/biom11040529

Interaction of Ligands for PET with the Dopamine D3 Receptor: In Silico and In Vitro Methods
Cited by: 6
Author(s): Chia-Ju Hsieh, Aladdin Riad, Ji Youn Lee, Kristoffer Sahlholm, Kuiying Xu, Robert R. Luedtke, Robert H. Mach
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1007721

A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries
Cited by: 24
Author(s): Cedoljub Bundalovic-Torma, Gregory B. Whitfield, Lindsey S. Marmont, P. Lynne Howell, John Parkinson
Software Mentions: 3
Published: over 6 years ago

10.1186/s12902-016-0140-8

Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2
Cited by: 8
Author(s): Mogens Fenger, Dorte L. Hansen, Dorte Worm, Lisbeth E. Hvolris, Viggo B. Kristiansen, Elin Rebecka Carlsson, Sten Madsbad
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0240693

Inside the decentralised casino: A longitudinal study of actual cryptocurrency gambling transactions
Cited by: 6
Author(s): Oliver James Scholten, David Zendle, James Alfred Walker
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0237829

Failure to modulate reward prediction errors in declarative learning with theta (6 Hz) frequency transcranial alternating current stimulation
Cited by: 6
Author(s): Kate Ergo, Esther De Loof, Gillian Debra, Bernhard Pastötter, Tom Verguts
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.115.017665

Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
Cited by: 26
Author(s): Nicholas Haase, Timothy Beissinger, Candice N. Hirsch, Brieanne Vaillancourt, Shweta Deshpande, Kerrie Barry, C. Robin Buell, Shawn M. Kaeppler, Natalia de León
Software Mentions: 3
Published: about 11 years ago

10.3389/fmicb.2020.581227

Effects of Chemical and Mechanical Lysis on Microbial DNA Yield, Integrity, and Downstream Amplicon Sequencing of Rumen Bacteria and Protozoa
Cited by: 13
Author(s): Zhi Ma, Xiu Min Zhang, Rong Wang, Min Wang, Ting Liu, Zhi Liang Tan
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.ppat.1009431

High-throughput, single-copy sequencing reveals SARS-CoV-2 spike variants coincident with mounting humoral immunity during acute COVID-19
Cited by: 29
Author(s): Sung Hee Ko, Elham Bayat Mokhtari, Prakriti Mudvari, Sydney Stein, Christopher D. Stringham, Danielle A. Wagner, Sabrina Ramelli, Marcos J. Ramos‐Benitez, Jeffrey R Strich, Richard T. Davey, Tongqing Zhou, John Misasi, Peter D. Kwong, Daniel S. Chertow, Nancy J. Sullivan, Eli Boritz
Software Mentions: 3
Published: over 5 years ago

10.2196/24122

The Perceived Impact and Usability of a Care Management and Coordination System in Delivering Services to Vulnerable Populations: Mixed Methods Study
Cited by: 2
Author(s): Rubina F. Rizvi, Courtney VanHouten, Tiffani J Bright, Mollie McKillop, Shira Alevy, David Brotman, Megan Sands-Lincoln, Jane L. Snowdon, Barbie J Robinson, Carolyn Staats, Gretchen Purcell Jackson, William J. Kassler
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0229615

A simple model suggesting economically rational sample-size choice drives irreproducibility
Cited by: 3
Author(s): Oliver Braganza
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0254943

The influence of LncRNA H19 polymorphic variants on susceptibility to cancer: A systematic review and updated meta-analysis of 28 case-control studies
Cited by: 2
Author(s): Kunpeng Wang, Zheng Zhu, Yiqiu Wang, Dayuan Zong, Peng Xue, Jingyu Gu, Da Yong Lu, Chuanquan Tu
Software Mentions: 3
Published: about 5 years ago

10.3390/ijms20133155

GPathFinder: Identification of Ligand-Binding Pathways by a Multi-Objective Genetic Algorithm
Cited by: 13
Author(s): José-Emilio Sánchez-Aparicio, Giuseppe Sciortino, Daniel Viladrich Herrmannsdoerfer, Pablo Orenes Chueca, Jaime Rodríguez-Guerra Pedregal, Jean‐Didier Maréchal
Software Mentions: 3
Published: about 7 years ago

10.1186/s13568-018-0714-0

Activated sludge bacterial communities of typical wastewater treatment plants: distinct genera identification and metabolic potential differential analysis
Cited by: 38
Author(s): Bo Zhang, Xiangyang Xu, Liang Zhu
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-019-42276-w

Radiomic features and multilayer perceptron network classifier: a robust MRI classification strategy for distinguishing glioblastoma from primary central nervous system lymphoma
Cited by: 67
Author(s): Jihye Yun, Ji Eun Park, Hyunna Lee, Sungwon Ham, Namkug Kim, Ho Sung Kim
Software Mentions: 3
Published: over 7 years ago

10.1038/s41597-020-0483-x

Developing reliable hourly electricity demand data through screening and imputation
Cited by: 31
Author(s): T. Ruggles, David Farnham, Dan Tong, Ken Caldeira
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0240553

Dexmedetomidine use in pediatric strabismus surgery: A systematic review and meta-analysis
Cited by: 11
Author(s): Fu Wei Chiang, Jin Chang, Shih Chang Hsu, Kuo Yuan Hsu, Karen Chia Wen Chu, Chun Jen Huang, Chyi Huey Bai, Chiehfeng Chen, Yuan Pin Hsu
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-61178-w

Radiomics prognostication model in glioblastoma using diffusion- and perfusion-weighted MRI
Cited by: 41
Author(s): Ji Eun Park, Ho Sung Kim, Youngheun Jo, Roh Eul Yoo, Seung Hong Choi, Soo Jung Nam
Software Mentions: 3
Published: over 6 years ago

10.3758/s13428-019-01245-x

Ratcave: A 3D graphics python package for cognitive psychology experiments
Cited by: 6
Author(s): Nicholas A. Del Grosso, Anton Sirota
Software Mentions: 3
Published: over 7 years ago

10.1002/brb3.1031

Differential patterns of age‐related cortical and subcortical functional connectivity in 6‐to‐10 year old children: A connectome‐wide association study
Cited by: 9
Author(s): Carolyn D. Langen, Ryan L. Muetzel, Laura M. E. Blanken, Aad van der Lugt, Henning Tiemeier, Frank C. Verhulst, Wiro J. Niessen, Tonya White
Software Mentions: 3
Published: about 8 years ago

10.7717/peerj.12059

Distribution and diversity of myxomycetes in Tiantangzhai National Forest Park, China
Cited by: 2
Author(s): Min Li, Gaowei Wang, Yang Gao, Ming-Zhu Dou, Ziqi Wang, Shi Yan, Shuanglin Chen
Software Mentions: 3
Published: almost 5 years ago

10.3390/cells9122642

Common Factors in Neurodegeneration: A Meta-Study Revealing Shared Patterns on a Multi-Omics Scale
Cited by: 30
Author(s): Nicolas Ruffini, Susanne Klingenberg, Susann Schweiger, Susanne Gerber
Software Mentions: 3
Published: over 5 years ago

10.1038/srep11988

Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells
Cited by: 17
Author(s): Keith C. Heyde, Warren C. Ruder
Software Mentions: 3
Published: about 11 years ago

10.1002/advs.202004958

DeepVISP: Deep Learning for Virus Site Integration Prediction and Motif Discovery
Cited by: 8
Author(s): Haodong Xu, Peilin Jia, Zhongming Zhao
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-019-2890-6

Detection and visualization of communities in mass spectrometry imaging data
Cited by: 16
Author(s): Karsten Wüllems, Jan Kölling, Hanna Bednarz, Karsten Niehaus, Volkmar Hans, Tim Wilhelm Nattkemper
Software Mentions: 3
Published: about 7 years ago

10.3390/membranes5040702

Lipid Diffusion in Supported Lipid Bilayers: A Comparison between Line-Scanning Fluorescence Correlation Spectroscopy and Single-Particle Tracking
Cited by: 26
Author(s): Markus Rose, Nehad Hirmiz, Jose M. Moran‐Mirabal, Cécile Fradin
Software Mentions: 3
Published: almost 11 years ago

10.3389/fgene.2018.00608

Identification of Candidate Genes and Regulatory Factors Underlying Intramuscular Fat Content Through Longissimus Dorsi Transcriptome Analyses in Heavy Iberian Pigs
Cited by: 41
Author(s): María Muñoz, Juan García‐Casco, Carmen Caraballo, Miguel Ángel Fernández‐Barroso, Fernando Sánchez‐Esquiliche, Fernando Gómez, Marı́a del Carmen Rodrı́guez, L. Silió
Software Mentions: 3
Published: over 7 years ago

10.1128/mSystems.00057-19

Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont
Cited by: 19
Author(s): Ilia Burgsdorf, Kim M. Handley, Rinat Bar-Shalom, Patrick M. Erwin, Laura Steindler
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsos.191020

Sexual frequency is associated with age of natural menopause: results from the Study of Women's Health Across the Nation
Cited by: 5
Author(s): Megan Arnot, Ruth Mace
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pgen.1009805

A broad analysis of splicing regulation in yeast using a large library of synthetic introns
Cited by: 11
Author(s): Dvir Schirman, Zohar Yakhini, Yitzhak Pilpel, Orna Dahan
Software Mentions: 3
Published: almost 5 years ago

10.1021/acs.analchem.1c01359

Combined Metabolic and Chemical (CoMetChem) Labeling Using Stable Isotopes—a Strategy to Reveal Site-Specific Histone Acetylation and Deacetylation Rates by LC–MS
Cited by: 1
Author(s): Alienke van Pijkeren, Jörn Dietze, Alejandro Sánchez Brotons, Anna-Sophia Egger, Tim Lijster, Andrei Barcaru, Madlen Hotze, Philipp Kobler, Frank J. Dekker, Péter Horvatovich, Barbro N. Melgert, Mathias Ziegler, Kathrin Thedieck, Ines Heiland, Rainer Bischoff, Marcel Kwiatkowski
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12864-021-07767-z

MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction
Cited by: 20
Author(s): Valentine Murigneux, Leah W. Roberts, Brian M. Forde, Minh-Duy Phan, Nguyen Thi Khanh Nhu, Adam Irwin, Patrick N A Harris, David L. Paterson, Mark A. Schembri, David M. Whiley, Scott A. Beatson
Software Mentions: 3
Published: about 5 years ago

10.3389/fpsyt.2018.00398

Prison Suicide in Comparison to Suicide Events in Forensic Psychiatric Hospitals in Germany
Cited by: 12
Author(s): Alexander Voulgaris, Nadine Kose, Norbert Konrad, Annette Opitz‐Welke
Software Mentions: 3
Published: almost 8 years ago

10.1080/19768354.2019.1658638

Prognostic role of the beta-2 adrenergic receptor in clear cell renal cell carcinoma
Cited by: 4
Author(s): Mihyang Ha, Dong Woo Kim, Jayoung Kim, Chae Mi Hong, Su Min Park, In Ae Woo, Min Yong Kim, Hyunjun Koo, Jin Namkoong, Jae Hyun Kim, Myoung‐Eun Han, Parkyong Song, Jin Hur, Chi‐Dug Kang, Yun Hak Kim, Dongjun Lee, Sae‐Ock Oh
Software Mentions: 3
Published: almost 7 years ago

10.7717/peerj.6652

IOCBIO Sparks detection and analysis software
Cited by: 9
Author(s): Martin Laasmaa, Niina Karro, Rikke Birkedal, Marko Vendelin
Software Mentions: 3
Published: over 7 years ago

10.1038/srep05858

Competitive Dynamics on Complex Networks
Cited by: 21
Author(s): Jun Zhao, Qipeng Liu, Xiaofan Wang
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0183889

Elastic network model of learned maintained contacts to predict protein motion
Cited by: 13
Author(s): Ines Putz, Oliver Brock
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpsyg.2020.01737

The Impact of a Construction Play on 5- to 6-Year-Old Children’s Reasoning About Stability
Cited by: 8
Author(s): Anke Maria Weber, Timo Reuter, Miriam Leuchter
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0037392

Survival Analysis of Patients with Heart Failure: Implications of Time-Varying Regression Effects in Modeling Mortality
Cited by: 25
Author(s): Suely Ruiz Giolo, José Eduardo Krieger, Alfredo José Mansur, Alexandre C. Pereira
Software Mentions: 3
Published: about 14 years ago

10.1371/journal.pone.0237136

Early head-up mobilisation versus standard care for patients with severe acquired brain injury: A systematic review with meta-analysis and Trial Sequential Analysis
Cited by: 7
Author(s): Christian Gunge Riberholt, Vibeke Wagner, Jane Lindschou, Christian Gluud, Jesper Mehlsen, Kirsten Møller
Software Mentions: 3
Published: about 6 years ago

10.1186/s12983-019-0310-4

The sex- and duration-dependent effects of intermittent fasting on lifespan and reproduction of spider mite Tetranychus urticae
Cited by: 6
Author(s): Guangyun Li, Zhi‐Qiang Zhang
Software Mentions: 3
Published: over 7 years ago

10.1186/s13062-019-0249-6

A novel framework for horizontal and vertical data integration in cancer studies with application to survival time prediction models
Cited by: 33
Author(s): Iliyan Mihaylov, Maciej M. Kańduła, Milko Krachunov, Dimitar Vassilev
Software Mentions: 3
Published: over 6 years ago

10.1007/s00280-019-03797-3

A novel method to address the association between received dose intensity and survival outcome: benefits of approaching treatment intensification at a more individualised level in a trial of the European Osteosarcoma Intergroup
Cited by: 18
Author(s): Carlo Lancia, Jakob Anninga, Matthew R. Sydes, Cristian Spitoni, Jeremy S Whelan, Pancras C.W. Hogendoorn, Hans Gelderblom, Marta Fiocco
Software Mentions: 3
Published: over 7 years ago

10.3390/genes9060300

Automated Recognition of RNA Structure Motifs by Their SHAPE Data Signatures
Cited by: 10
Author(s): Pierce Radecki, Mirko Ledda, Sharon Aviran
Software Mentions: 3
Published: about 8 years ago

10.3390/genes10080613

Meta-Analysis of Cancer Triploidy: Rearrangements of Genome Complements in Male Human Tumors Are Characterized by XXY Karyotypes
Cited by: 12
Author(s): Ninel M. Vainshelbaum, Pawel Zayakin, Regīna Kleina, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 3
Published: about 7 years ago

10.3390/cancers13174262

Impairment of Autophagic Flux Participates in the Antitumor Effects of TAT-Cx43266-283 in Glioblastoma Stem Cells
Cited by: 5
Author(s): Sara G. Pelaz, Claudia Ollauri-Ibáñez, Concepción Lillo, Arantxa Tabernero
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj-cs.262

Legal document similarity: a multi-criteria decision-making perspective
Cited by: 10
Author(s): Rupali Wagh, D. K. Anand
Software Mentions: 3
Published: over 6 years ago

10.2144/fsoa-2020-0157

Cancer patients with COVID-19: a retrospective study of 51 patients in the district of Piacenza, Northern Italy
Cited by: 17
Author(s): Luigi Cavanna, Chiara Citterio, Ilaria Toscani, Cosimo Franco, Andrea Magnacavallo, Serena Caprioli, Evelina Cattadori, Camilla Di Nunzio, Roberto Pane, Roberta Schiavo, Claudia Biasini, Massimo Ambroggi
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj-cs.679

Approximate spectral clustering using both reference vectors and topology of the network generated by growing neural gas
Cited by: 1
Author(s): Kazuhisa Fujita
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0249326

An effort-based social feedback paradigm reveals aversion to popularity in socially anxious participants and increased motivation in adolescents
Cited by: 5
Author(s): Dienke J. Bos, Emily D. Barnes, Benjamin M. Silver, Eliana L. Ajodan, Elysha Clark-Whitney, Matthew A. Scult, Jonathan D. Power, Rebecca M. Jones
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0220762

Anatomical features of Fagaceae wood statistically extracted by computer vision approaches: Some relationships with evolution
Cited by: 16
Author(s): Kazunori Kobayashi, Takahiro Kegasa, Sung-Wook Hwang, Junji Sugiyama
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-021-04294-2

HAVoC, a bioinformatic pipeline for reference-based consensus assembly and lineage assignment for SARS-CoV-2 sequences
Cited by: 22
Author(s): Phuoc Truong Nguyen, Ilya Plyusnin, Tarja Sironen, Olli Vapalahti, Ravi Kant, Teemu Smura
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0226481

Connectivity differences between Gulf War Illness (GWI) phenotypes during a test of attention
Cited by: 4
Author(s): Tomas Clarke, Jessie D. Jamieson, Patrick S. Malone, Rakib U. Rayhan, Stuart D. Washington, John W. VanMeter, James N. Baraniuk
Software Mentions: 3
Published: over 6 years ago

10.3390/insects12010004

Tracing the Invasion and Expansion Characteristics of the Flatid Planthopper, Metcalfa pruinosa (Hemiptera: Flatidae), in Korea Using Mitochondrial DNA Sequences
Cited by: 4
Author(s): Keon Hee Lee, Jun Seong Jeong, Jeong Sun Park, Min Jee Kim, Na Ra Jeong, Su Yeon Jeong, Gwan Seok Lee, Wonhoon Lee, Iksoo Kim
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-017-10697-0

Millisecond dynamics of BTK reveal kinome-wide conformational plasticity within the apo kinase domain
Cited by: 43
Author(s): Mohammad M. Sultan, R. Aldrin Denny, Ray Unwalla, Frank Lovering, Vijay S. Pande
Software Mentions: 3
Published: over 8 years ago

10.3390/s20143852

Network Service and Resource Orchestration: A Feature and Performance Analysis within the MEC-Enhanced Vehicular Network Context
Cited by: 10
Author(s): Nina Slamnik-Kriještorac, Erik de Britto e Silva, Esteban Municio, Henrique Carvalho de Resende, Seilendria A. Hadiwardoyo, Johann M. Márquez-Barja
Software Mentions: 3
Published: about 6 years ago

10.1186/s12859-019-2865-7

SpliceV: analysis and publication quality printing of linear and circular RNA splicing, expression and regulation
Cited by: 11
Author(s): Nathan Ungerleider, Erik K. Flemington
Software Mentions: 3
Published: over 7 years ago

10.3390/cancers11091393

Should Tumor Infiltrating Lymphocytes, Androgen Receptor, and FOXA1 Expression Predict the Clinical Outcome in Triple Negative Breast Cancer Patients?
Cited by: 12
Author(s): Anita Mangia, Concetta Saponaro, Alessandro Vagheggini, Giuseppina Opinto, Matteo Centonze, Chiara Vicenti, Ondina Popescu, Maria Irene Pastena, Francesco Giotta, Nicola Silvestris
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12859-018-2289-9

PRS-on-Spark (PRSoS): a novel, efficient and flexible approach for generating polygenic risk scores
Cited by: 16
Author(s): Lawrence M. Chen, Nelson Yao, Elika Garg, Yuecai Zhu, Thao T. T. Nguyen, Irina Pokhvisneva, Shantala A. Hari Dass, Eva Unternäehrer, Hélène Gaudreau, Marie Forest, Lisa M. McEwen, Julia L. MacIsaac, Michæl S. Kobor, Celia Greenwood, Patrícia Pelufo Silveira, Michael J. Meaney, Kieran J. O’Donnell
Software Mentions: 3
Published: about 8 years ago

10.3390/v10040192

Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa
Cited by: 22
Author(s): Lidia Lasecka-Dykes, Caroline F. Wright, Antonello Di Nardo, Greg Logan, Valérie Mioulet, Terry Jackson, Tobias J. Tuthill, Nick J. Knowles, Donald P. King
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers12113273

Pharmacotranscriptomic Analysis Reveals Novel Drugs and Gene Networks Regulating Ferroptosis in Cancer
Cited by: 22
Author(s): Haitang Yang, Liang Zhao, Yanyun Gao, Feng Yao, Thomas Marti, Ralph A. Schmid, Ren‐Wang Peng
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers13133359

Immune Checkpoint Blockade for Metastatic Uveal Melanoma: Patterns of Response and Survival According to the Presence of Hepatic and Extrahepatic Metastasis
Cited by: 12
Author(s): Elias A. T. Koch, Anne Petzold, Anja Wessely, Edgar Dippel, Anja Gesierich, Ralf Gutzmer, Jessica C. Hassel, Sebastian Haferkamp, Bettina Hohberger, Katharina C. Kähler, H. L. J. Knorr, Nicole Kreuzberg, Ulrike Leiter, Carmen Loquai, Friedegund Meier, Markus Meißner, Peter Mohr, Claudia Pföhler, Farnaz Rahimi, Dirk Schadendorf, Beatrice Schell, Max Schlaak, Patrick Terheyden, Kai‐Martin Thoms, Beatrice Schuler‐Thurner, Selma Ugurel, Jens Ulrich, Jochen Utikal, Michael Weichenthal, Fabian Ziller, Carola Berking, Markus V. Heppt
Software Mentions: 3
Published: about 5 years ago

10.1186/s13321-018-0260-4

Maximizing gain in high-throughput screening using conformal prediction
Cited by: 16
Author(s): Fredrik Svensson, Avid M. Afzal, Ulf Norinder, Andreas Bender
Software Mentions: 3
Published: over 8 years ago

10.1038/srep24146

Image-based computational quantification and visualization of genetic alterations and tumour heterogeneity
Cited by: 27
Author(s): Qing Zhong, Jan H. Rüschoff, Tiannan Guo, Maria Gabrani, Peter J. Schüffler, Markus Rechsteiner, Yansheng Liu, Thomas J. Fuchs, Niels J. Rupp, Christian Daniel Fankhauser, Joachim M. Buhmann, Sven Perner, Cédric Poyet, Miriam Blattner, Davide Soldini, Holger Moch, Mark A. Rubin, Aurelia Noske, Josef Rüschoff, Michael C. Haffner, Wolfram Jochum, Peter J. Wild
Software Mentions: 3
Published: over 10 years ago

10.2196/11990

Detecting Hypoglycemia Incidents Reported in Patients’ Secure Messages: Using Cost-Sensitive Learning and Oversampling to Reduce Data Imbalance
Cited by: 24
Author(s): Jinying Chen, John P. Lalor, Weisong Liu, Emily Druhl, Edgard A. Granillo, Varsha G Vimalananda, Hong Yu
Software Mentions: 3
Published: over 7 years ago

10.3389/fpls.2021.654676

Transcriptome Analysis and RNA Interference Reveal GhGDH2 Regulating Cotton Resistance to Verticillium Wilt by JA and SA Signaling Pathways
Cited by: 14
Author(s): Xingjiang Xiong, Shichao Sun, Qian Zhu, Xinyu Zhang, Feng Liu, Yanjun Li, Fei Xue
Software Mentions: 3
Published: about 5 years ago

10.1080/14756366.2016.1260565

Exploring the first Rimonabant analog-opioid peptide hybrid compound, as bivalent ligand for CB1 and opioid receptors
Cited by: 26
Author(s): Adriano Mollica, Sveva Pelliccia, Valeria Famiglini, Azzurra Stefanucci, Giorgia Macedonio, Annalisa Chiavaroli, Giustino Orlando, Luigi Brunetti, Claudio Ferrante, Stefano Pieretti, Ettore Novellino, Sándor Benyhe, Ferenc Zádor, Anna Erdei, Edina Szűcs, Reza Samavati, Szalbolch Dvrorasko, Csaba Tömböly, Rino Ragno, Alexandros Patsilinakos, Romano Silvestri
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-021-84422-3

Nitrogen addition decreases methane uptake caused by methanotroph and methanogen imbalances in a Moso bamboo forest
Cited by: 14
Author(s): Quan Li, Changhui Peng, Junbo Zhang, Yongfu Li, Xinzhang Song
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0196615

An automated, high-throughput plant phenotyping system using machine learning-based plant segmentation and image analysis
Cited by: 73
Author(s): Unseok Lee, Sungyul Chang, Gian Anantrio Putra, Hyoungseok Kim, Dong Hwan Kim
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-018-24951-6

Resting-state fMRI study of brain activation using low-intensity repetitive transcranial magnetic stimulation in rats
Cited by: 24
Author(s): Bhedita J. Seewoo, Kirk W. Feindel, Sarah J. Etherington, Jennifer Rodger
Software Mentions: 3
Published: over 8 years ago

10.1128/MRA.01288-19

Chromosome-Scale Genome Assembly of Two Australian Nannochloropsis oceanica Isolates Exhibiting Superior Lipid Characteristics
Cited by: 10
Author(s): Reuben B. Brown, Taylor J. Wass, Skye R. Thomas‐Hall, Peer M. Schenk
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0233997

Where is your field going? A machine learning approach to study the relative motion of the domains of physics
Cited by: 8
Author(s): Andrea Palmucci, Hao Liao, Andrea Napoletano, Andrea Zaccaria
Software Mentions: 3
Published: about 6 years ago

10.3389/fpsyg.2021.702710

Organizing the Methodological Toolbox: Lessons Learned From Implementing Developmental Methods Online
Cited by: 9
Author(s): Jonathan F. Kominsky, Katarina Begus, Ilona Bass, Joseph Colantonio, Julia A. Leonard, Allyson P. Mackey, Elizabeth Bonawitz
Software Mentions: 3
Published: almost 5 years ago

10.3390/cancers12061593

Sex-Specific Differences in Primary CNS Lymphoma
Cited by: 2
Author(s): Thomas Roetzer, Julia Furtner, Johanna Gesperger, Lukas Seebrecht, Dave Bandke, Martina Brada, Tanisa Brandner-Kokalj, Astrid Grams, Johannes Haybaeck, Melitta Kitzwoegerer, Stefan Leber, Franz Marhold, Patrizia Moser, Camillo Sherif, Johannes Trenkler, Julia Judith Unterluggauer, Serge Weis, Franz Wuertz, Johannes A. Hainfellner, Georg Langs, Karl-Heinz Nenning, Adelheid Wöehrer
Software Mentions: 3
Published: about 6 years ago

10.3390/s20113061

Performance of LoRaWAN for Handling Telemetry and Alarm Messages in Industrial Applications
Cited by: 10
Author(s): Francisco Helder C. dos S. Filho, Plínio S. Dester, Elvis M. G. Stancanelli, Paulo Cardieri, Pedro H. J. Nardelli, Dick Carrillo, Hirley Alves
Software Mentions: 3
Published: about 6 years ago