Scientific Papers with Software Mentions

10.1186/s12885-016-2345-7

Evaluation of clinical parameters influencing the development of bone metastasis in breast cancer
Cited by: 41
Author(s): Joachim Diessner, Manfred Wischnewsky, Tanja Stüber, Roland Stein, Mathias Krockenberger, Sebastian Häusler, Wolfgang Janni, R. Kreienberg, Maria Blettner, Lukas Schwentner, Achim Wöckel, Catharina Bartmann
Software Mentions: 1
Published: over 10 years ago

10.1186/s12898-019-0254-8

Enhancing healthy ecosystems in northern Ghana through eco-friendly farm-based practices: insights from irrigation scheme-types
Cited by: 8
Author(s): Caesar Agula, Franklin Nantui Mabe, Mamudu Abunga Akudugu, Saa Dittoh, Sylvester Nsobire Ayambila, Ayaga A. Bawah
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-016-3250-9

Novel approach for identification of influenza virus host range and zoonotic transmissible sequences by determination of host-related associative positions in viral genome segments
Cited by: 18
Author(s): Fatemeh Kargarfard, Ashkan Sami, Manijeh Mohammadi‐Dehcheshmeh, Esmaeil Ebrahimie
Software Mentions: 1
Published: almost 10 years ago

10.1080/13880209.2017.1371769

Anticarcinogenic activity of Muntingia calabura leaves methanol extract against the azoxymethane-induced colon cancer in rats involved modulation of the colonic antioxidant system partly by flavonoids
Cited by: 8
Author(s): Nur Liana Md Nasir, Noorsyaza Eddrina Kamsani, Norhafizah Mohtarrudin, Fezah Othman, Siti Farah Md Tohid, Zainul Amiruddin Zakaria
Software Mentions: 1
Published: over 9 years ago

10.1080/13880209.2019.1606836

Methanol extract of Muntingia calabura leaves attenuates CCl4-induced liver injury: possible synergistic action of flavonoids and volatile bioactive compounds on endogenous defence system
Cited by: 16
Author(s): Zainul Amiruddin Zakaria, Nur Diyana Mahmood, Maizatul Hasyima Omar, Muhammad Taher, Rusliza Basir
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms17111814

Assessing Heterogeneity of Osteolytic Lesions in Multiple Myeloma by 1H HR-MAS NMR Metabolomics
Cited by: 5
Author(s): Laurette Tavel, Francesca Fontana, Josè Manuel Garcia Manteiga, Silvia Mari, E. Mariani, Enrico Caneva, Roberto Sitia, F. Camnasio, Magda Marcatti, Simone Cenci, Giovanna Musco
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13601-020-00315-0

Impact on quality of life and safety of sublingual and subcutaneous immunotherapy in children with severe house dust mite and pollen-associated allergic rhinoconjunctivitis
Cited by: 8
Author(s): Thomas Proctor, Elodie Morrough, Otto Fenske, Sarah Allatt, Stephen Hughes, Vibha Sharma, Peter D. Arkwright
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms18122705

Differential Expression of VvLOXA Diversifies C6 Volatile Profiles in Some Vitis vinifera Table Grape Cultivars
Cited by: 19
Author(s): Qiu-Man Xu, Lina Sun, Xiaoqing Xu, Baoqing Zhu, Huini Xu
Software Mentions: 1
Published: over 8 years ago

10.1155/2016/1494981

Methanolic Extract ofClinacanthus nutansExerts Antinociceptive Activity via the Opioid/Nitric Oxide-Mediated, but cGMP-Independent, Pathways
Cited by: 28
Author(s): Mohammad Hafiz Abdul Rahim, Zainul Amiruddin Zakaria, Mohd Hijaz Mohd Sani, Maizatul Hasyima Omar, Yusnita Yakob, Manraj Singh Cheema, Siew Mooi Ching, Zubair Ahmad, Arifah Abdul Kadir
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms19041154

Identification and Evolution of TGF-β Signaling Pathway Members in Twenty-Four Animal Species and Expression in Tilapia
Cited by: 36
Author(s): Shuqing Zheng, Juan Long, Zhilong Liu, Wenjing Tao, Deshou Wang
Software Mentions: 1
Published: over 8 years ago

10.3389/fphar.2017.00982

Endogenous Antioxidant and LOX-Mediated Systems Contribute to the Hepatoprotective Activity of Aqueous Partition of Methanol Extract of Muntingia calabura L. Leaves against Paracetamol Intoxication
Cited by: 8
Author(s): Zainul Amiruddin Zakaria, Nur Diyana Mahmood, Siti Syariah Mamat, Nurliana Nasir, Maizatul Hasyima Omar
Software Mentions: 1
Published: over 8 years ago

10.3389/fvets.2019.00077

Integrated Return-To-Field and Targeted Trap-Neuter-Vaccinate-Return Programs Result in Reductions of Feline Intake and Euthanasia at Six Municipal Animal Shelters
Cited by: 26
Author(s): Daniel D. Spehar, Peter J. Wolf
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms19123888

Morphological Characterization of Root System Architecture in Diverse Tomato Genotypes during Early Growth
Cited by: 16
Author(s): Aurora Alaguero-Cordovilla, Francisco Javier Gran-Gómez, Sergio Tormos-Moltó, José Manuel Pérez-Pérez
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21030975

Genome-Wide Analysis of the MYB Transcription Factor Superfamily in Physcomitrella patens
Cited by: 32
Author(s): Xiaojun Pu, Lixin Yang, Lina Liu, Xueyi Dong, Silin Chen, Zexi Chen, Gaojing Liu, Yulin Jia, Wenya Yuan, Li Liu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21072394

Comparative Proteomic Analysis by iTRAQ Reveals that Plastid Pigment Metabolism Contributes to Leaf Color Changes in Tobacco (Nicotiana tabacum) during Curing
Cited by: 20
Author(s): Shengjiang Wu, Yushuang Guo, Muhammad Faheem Adil, Shafaque Sehar, Bin Cai, Zhangmin Xiang, Youyou Tu, Degang Zhao, Imran Haider Shamsi
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9111565

A Genetic Screen to Identify New Molecular Players Involved in Photoprotection qH in Arabidopsis thaliana
Cited by: 8
Author(s): Pierrick Bru, Sanchali Nanda, Alizée Malnoë
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2015.00250

Arabidopsis thaliana mutants lacking cpFtsY or cpSRP54 exhibit different defects in photosystem II repair
Cited by: 9
Author(s): Britta Walter, Thomas Pieta, Danja Schünemann
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms21113991

AtSK11 and AtSK12 Mediate the Mild Osmotic Stress-Induced Root Growth Response in Arabidopsis
Cited by: 9
Author(s): Long Dong, Zhixin Wang, Jing Liu, Xuelu Wang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-49397-2

Generative adversarial network based on chaotic time series
Cited by: 12
Author(s): Makoto Naruse, Takashi Matsubara, Nicolas Chauvet, Kazutaka Kanno, Tianyu Yang, Atsushi Uchida
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21186782

Gut Microbiota-Mediated Inflammation and Gut Permeability in Patients with Obesity and Colorectal Cancer
Cited by: 55
Author(s): Lidia Sánchez-Alcoholado, Rafael Ordóñez, A. Otero, Isaac Plaza-Andrade, Aurora Laborda-Illanes, J. A. Medina, Bruno Ramos‐Molina, Jaime Gómez-Millán, María Isabel Queipo-Ortuño
Software Mentions: 1
Published: almost 6 years ago

10.1186/1472-6947-12-88

The freetext matching algorithm: a computer program to extract diagnoses and causes of death from unstructured text in electronic health records
Cited by: 31
Author(s): Anoop D Shah, Carlos Martínez, Harry Hemingway
Software Mentions: 1
Published: about 14 years ago

10.3390/ijms21239015

Unique Role of Caffeine Compared to Other Methylxanthines (Theobromine, Theophylline, Pentoxifylline, Propentofylline) in Regulation of AD Relevant Genes in Neuroblastoma SH-SY5Y Wild Type Cells
Cited by: 13
Author(s): Daniel Janitschke, Anna Andrea Lauer, C Bachmann, Martin S. Seyfried, Heike S. Grimm, Tobias Hartmann, Marcus O. W. Grimm
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.2736

Bioinformatical analysis of eukaryotic shugoshins reveals meiosis-specific features of vertebrate shugoshins
Cited by: 4
Author(s): T. M. Grishaeva, Darya Kulichenko, Yu. F. Bogdanov
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.0060178

Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating
Cited by: 305
Author(s): Geoffrey D. Findlay, Xianhua Yi, Michael J. MacCoss, Willie J. Swanson
Software Mentions: 1
Published: about 18 years ago

10.1038/s41431-021-00878-x

Comprehensive germline-genomic and clinical profiling in 160 unselected children and adolescents with cancer
Cited by: 29
Author(s): Rabea Wagener, Julia Taeubner, Carolin Walter, Layal Yasin, Deya Alzoubi, Christoph Bartenhagen, Andishe Attarbaschi, CF Classen, Udo Kontny, Julia Hauer, Ute Fischer, Martin Dugas, Michaela Kuhlen, Arndt Borkhardt, Triantafyllia Brozou
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22052229

Genome-Wide Identification and Analysis of the MYB Transcription Factor Gene Family in Chili Pepper (Capsicum spp.)
Cited by: 38
Author(s): Magda Lisette Arce-Rodríguez, Octavio Martínez, Neftalí Ochoa-Alejo
Software Mentions: 1
Published: over 5 years ago

10.1186/1472-6882-12-16

Species and tissue-specificity of prokinetic, laxative and spasmodic effects of Fumaria parviflora
Cited by: 30
Author(s): Najeeb Ur Rehman, Malik Hassan Mehmood, Adnan J. Al‐Rehaily, Ramzi A. Mothana, Anwarul Hassan Gilani
Software Mentions: 1
Published: over 14 years ago

10.1186/1472-6882-10-2

Antispasmodic and vasodilator activities of Morinda citrifolia root extract are mediated through blockade of voltage dependent calcium channels
Cited by: 65
Author(s): Anwarul Hassan Gilani, Saf-ur-Rehman Mandukhail, Javeid Iqbal, Masoom Yasinzai, Nauman Aziz, Aslam Khan, Najeeb Ur Rehman
Software Mentions: 1
Published: over 16 years ago

10.3390/ijms22179527

Nitrate Regulates Maize Root Transcriptome through Nitric Oxide Dependent and Independent Mechanisms
Cited by: 1
Author(s): Laura Ravazzolo, Sara Trevisan, Silvia Iori, Cristian Forestan, Mario Malagoli, Silvia Quaggiotti
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules25040804

Components of Volatile Fractions from Eucalyptus camaldulensis Leaves from Iraqi–Kurdistan and Their Potent Spasmolytic Effects
Cited by: 11
Author(s): Dlzar A. Kheder, Omar A.M. Al-Habib, Gianluca Gilardoni, Giovanni Vidari
Software Mentions: 1
Published: over 6 years ago

10.12688/wellcomeopenres.16595.2

luox: novel validated open-access and open-source web platform for calculating and sharing physiologically relevant quantities for light and lighting
Cited by: 2
Author(s): Manuel Spitschan, James Mead, Chris Roos, Chris Lowis, Ben Griffiths, Paul Mucur, Michael Herf
Software Mentions: 1
Published: about 5 years ago

10.12669/pjms.35.6.746

Effect of Body Mass Index on respiratory parameters: A cross-sectional analytical Study
Cited by: 4
Author(s): Urooj Bhatti, Zulfiqar Ali Laghari, Binafsha Manzoor Syed
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms221910367

Genome-Wide Identification, Evolution, and Comparative Analysis of B-Box Genes in Brassica rapa, B. oleracea, and B. napus and Their Expression Profiling in B. rapa in Response to Multiple Hormones and Abiotic Stresses
Cited by: 8
Author(s): Sonam Singh, Sushil Satish Chhapekar, Yinbo Ma, Jana Jeevan Rameneni, Sang Heon Oh, Jusang Kim, Yong Pyo Lim, Su Ryun Choi
Software Mentions: 1
Published: almost 5 years ago

10.4103/0253-7613.51343

Role of Na+-K+ATPase enzyme in vascular response of goat ruminal artery
Cited by: 2
Author(s): K. Kathirvel, Parija Sc
Software Mentions: 1
Published: over 17 years ago

10.5812/ijhrba.4562

Studying the Effects of Mobile Phone Waves on Electro Cardiogram Parameters of Students in Zahedan University of Medical Sciences
Cited by: 5
Author(s): Gholamreza Komeili, Sima Nabizadeh Sarabandi
Software Mentions: 1
Published: about 14 years ago

10.3390/ijms151120134

MicroRNAs Associated with the Efficacy of Photodynamic Therapy in Biliary Tract Cancer Cell Lines
Cited by: 17
Author(s): Andrej Wagner, Christian Mayr, Doris Bach, Romana Illig, Kristjan Plaetzer, Frieder Berr, Martin Pichler, Daniel Neureiter, Tobias Kiesslich
Software Mentions: 1
Published: almost 12 years ago

10.1093/database/baaa093

KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling
Cited by: 2
Author(s): Hugo Mochão, Pedro Barahona, Rafael S. Costa
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.8466

Distinctly altered gut microbiota in the progression of liver disease
Cited by: 159
Author(s): Guoxiang Xie, Xiaoning Wang, Ping Liu, Runmin Wei, Wenlian Chen, Cynthia Rajani, Brenda Y. Hernandez, Rosanna A. Alegado, Bing Dong, Defa Li, Jia Wang
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8579

Changes in plasma chemokine C-C motif ligand 2 levels during treatment with eicosapentaenoic acid predict outcome in patients undergoing surgery for colorectal cancer liver metastasis
Cited by: 11
Author(s): Milène Volpato, Sarah L. Perry, Gemma Marston, Nicola Ingram, Andrew J. Cockbain, Heather Burghel, Jake Mann, David J. Lowes, Erica Wilson, Alastair Droop, Juliette Randerson-Moor, P. Louise Coletta, Mark A. Hull
Software Mentions: 1
Published: over 10 years ago

10.3390/ijerph18042170

Development of a Chatbot Program for Follow-Up Management of Workers’ General Health Examinations in Korea: A Pilot Study
Cited by: 7
Author(s): Byeong Jin Ye, Ju Young Kim, Chunhui Suh, Seong Pil Choi, Min Yeong Choi, Dong Hyun Kim, Byung Chul Son
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.18802

Dexamethasone affects cell growth/apoptosis/chemosensitivity of colon cancer via glucocorticoid receptor α/NF-κB
Cited by: 23
Author(s): Jia He, Jinming Zhou, Weiwen Yang, Qi Zhou, Xi Liu, Xiaowu Pang, Jianjun Li, Feng Pan, Houjie Liang
Software Mentions: 1
Published: about 9 years ago

10.2196/16794

Usability, Acceptability, and Effectiveness of Web-Based Conversational Agents to Facilitate Problem Solving in Older Adults: Controlled Study
Cited by: 32
Author(s): Matthew Russell Bennion, Gillian E. Hardy, Roger K. Moore, Stephen Kellett, Abigail Millings
Software Mentions: 1
Published: over 6 years ago

10.2196/22959

Artificial Intelligence Can Improve Patient Management at the Time of a Pandemic: The Role of Voice Technology
Cited by: 17
Author(s): Tomasz Jadczyk, Wojciech Wojakowski, Michał Tendera, Timothy D. Henry, Gregory F. Egnaczyk, Satya Shreenivas
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.22318

Identification of a three miRNA signature as a novel potential prognostic biomarker in patients with bladder cancer
Cited by: 13
Author(s): Fei Peng, Hui Li, Hailang Xiao, Ling Li, Yan Li, Yi Wu
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0015485

Accuracy of Handheld Blood Glucose Meters at High Altitude
Cited by: 24
Author(s): Pieter de Mol, Hans Krabbe, Suzanna T. de Vries, Marion J Fokkert, Bert D. Dikkeschei, Rienk Rienks, Karin M. Bilo, Henk J. G. Bilo
Software Mentions: 1
Published: almost 16 years ago

10.1186/s13104-019-4772-4

Level of medication self-management capacity among patients on ambulatory care exiting hospital pharmacy at Muhimbili National Hospital, Tanzania: a descriptive cross-sectional study
Cited by: 1
Author(s): Hamu J Mlyuka, Hija Salehe, Wigilya P. Mikomangwa, Manase Kilonzi, Alphonce Ignace Marealle, Ritah Mutagonda, George M. Bwire
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.27508

Roscovitine enhances all-trans retinoic acid (ATRA)-induced nuclear enrichment of an ensemble of activated signaling molecules and augments ATRA-induced myeloid cell differentiation
Cited by: 9
Author(s): Asif Rashid, Xin Duan, Feng Gao, Moon-Sik Yang, Andrew Yen
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.27943

The acylfulvene alkylating agent, LP-184, retains nanomolar potency in non-small cell lung cancer carrying otherwise therapy-refractory mutations
Cited by: 2
Author(s): Aditya Kulkarni, Joseph McDermott, Umesh Kathad, Rama Modali, Jaepyeong Cha, Panna Sharma, Kishor Bhatia
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0145690

Petri Net and Probabilistic Model Checking Based Approach for the Modelling, Simulation and Verification of Internet Worm Propagation
Cited by: 5
Author(s): Misbah Razzaq, Jamil Ahmad
Software Mentions: 1
Published: over 10 years ago

10.1186/s13018-021-02392-8

Biomarkers mining for spinal cord injury based on integrated multi-transcriptome expression profile data
Cited by: 6
Author(s): Chongcheng Gong, Lin Liu, Yang Shen
Software Mentions: 1
Published: over 5 years ago

10.3390/jpm11050363

Integrative Systems Biology Approaches to Identify Potential Biomarkers and Pathways of Cervical Cancer
Cited by: 9
Author(s): Arafat Rahman Oany, Md. Younus Mia, Tahmina Pervin, Salem A. Alyami, Mohammad Ali Moni
Software Mentions: 1
Published: over 5 years ago

10.3390/s18092786

Generative vs. Discriminative Recognition Models for Off-Line Arabic Handwriting
Cited by: 3
Author(s): Moftah Elzobi, Ayoub Al-Hamadi
Software Mentions: 1
Published: about 8 years ago

10.3390/s19225057

A Model-Checking-Based Framework for Analyzing Ambient Assisted Living Solutions
Cited by: 6
Author(s): Ashalatha Kunnappilly, Raluca Marinescu, Cristina Seceleanu
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-016-3058-7

Whole genome sequence analysis indicates recent diversification of mammal-associated Campylobacter fetus and implicates a genetic factor associated with H2S production
Cited by: 17
Author(s): Linda van der Graaf–van Bloois, Birgitta Duim, William G. Miller, Ken J. Forbes, Jaap A. Wagenaar, Aldert Zomer
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0183925

Development of a real-time PCR for detection of Staphylococcus pseudintermedius using a novel automated comparison of whole-genome sequences
Cited by: 11
Author(s): Koen M. Verstappen, Loes Huijbregts, Mirlin Spaninks, Jaap A. Wagenaar, Ad C. Fluit, Birgitta Duim
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2458-12-422

Five-year monitoring of a gay-friendly voluntary counselling and testing facility in Switzerland: who got tested and why?
Cited by: 14
Author(s): Cédric Gumy, André Jeannin, Hugues Balthasar, Thérèse Huissoud, Vincent Jobin, Michael Häusermann, Hubert Crevoisier, Philippe Sudre, Françoise Dubois-Arber
Software Mentions: 1
Published: about 14 years ago

10.1186/s12967-018-1640-2

Systematic analysis of lncRNA–miRNA–mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer
Cited by: 188
Author(s): Chi Fan, Lei Ma, Ning Liu
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2458-14-3

Prevalence of hepatitis C in a Swiss sample of men who have sex with men: whom to screen for HCV infection?
Cited by: 44
Author(s): Axel J. Schmidt, Luis Falcato, Benedikt Zahno, Andrea Burri, Stephan Regenass, Beat Müllhaupt, Philip Bruggmann
Software Mentions: 1
Published: over 12 years ago

10.1186/s12967-019-02145-6

Long non-coding RNA BZRAP1-AS1 silencing suppresses tumor angiogenesis in hepatocellular carcinoma by mediating THBS1 methylation
Cited by: 32
Author(s): Weiwei Wang, Guoyong Chen, Bing Wang, Zheng Yuan, Guangbo Liu, Biao Niu, Yongfeng Chen, Shaotang Zhou, Jin He, Hao Xue
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pcbi.1005814

Transcriptomic correlates of neuron electrophysiological diversity
Cited by: 57
Author(s): Shreejoy J. Tripathy, Lilah Toker, Brenna Li, Cindy-Lee Crichlow, Dmitry Tebaykin, B. Ogan Mancarci, Paul Pavlidis
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1002670

Budding Yeast Dma Proteins Control Septin Dynamics and the Spindle Position Checkpoint by Promoting the Recruitment of the Elm1 Kinase to the Bud Neck
Cited by: 25
Author(s): Laura Merlini, Roberta Fraschini, Barbara Boettcher, Yves Barral, Giovanna Lucchini, Simonetta Piatti
Software Mentions: 1
Published: over 14 years ago

10.3390/jcm9092794

Comparison of Changes in the Condylar Volume and Morphology in Skeletal Class III Deformities Undergoing Orthognathic Surgery Using a Customized versus Conventional Miniplate: A Retrospective Analysis
Cited by: 3
Author(s): You Na Lim, In-Young Park, Jong-Cheol Kim, Soo-Hwan Byun, Byoung-Eun Yang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-87495-2

Congolius, a new genus of African reed frog endemic to the central Congo: A potential case of convergent evolution
Cited by: 1
Author(s): Tadeáš Nečas, Gabriel Badjedjea, Michal Vopálenský, Václav Gvoždík
Software Mentions: 1
Published: over 5 years ago

10.3390/nu12123828

Comparison of Different Dietary Indices as Predictors of Inflammation, Oxidative Stress and Intestinal Microbiota in Middle-Aged and Elderly Subjects
Cited by: 19
Author(s): Sergio Ruiz-Saavedra, Nuria Salazar, Ana Suárez, Clara G. de los Reyes‐Gavilán, Miguel Gueimonde, Sonia González
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.2006994

Coordinated electrical activity in the olfactory bulb gates the oscillatory entrainment of entorhinal networks in neonatal mice
Cited by: 29
Author(s): Sabine Gretenkord, Johanna K. Kostka, Henrike Hartung, Katja Watznauer, David Fleck, Angélica Minier-Toribio, Marc Spehr, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0137413

Extracting the Behaviorally Relevant Stimulus: Unique Neural Representation of Farnesol, a Component of the Recruitment Pheromone of Bombus terrestris
Cited by: 9
Author(s): Martin F. Strube‐Bloss, Austin Brown, Johannes Spaethe, Thomas Schmitt, Wolfgang Rößler
Software Mentions: 1
Published: almost 11 years ago

10.1107/S0907444912042369

High-resolution structures of AidH complexes provide insights into a novel catalytic mechanism forN-acyl homoserine lactonase
Cited by: 24
Author(s): Ang Gao, Gui Mei, Shun Liu, Ping Wang, Qun Tang, Yan Ping Liu, Hui Wen, Xiaohong An, Liqun Zhang, Xiao Xue Yan, Dong Liang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0066327

Prolonged Ketamine Effects in Sp4 Hypomorphic Mice: Mimicking Phenotypes of Schizophrenia
Cited by: 24
Author(s): Baohu Ji, Xin Wang, António Pinto-Duarte, Minjung Kim, Sorana Caldwell, Jared W. Young, M. Margarita Behrens, Terrence J. Sejnowski, Mark A. Geyer, Xianjin Zhou
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0008218

A Wireless Brain-Machine Interface for Real-Time Speech Synthesis
Cited by: 237
Author(s): Frank H. Guenther, Jonathan S. Brumberg, Eve Wright, Alfonso Nieto-Castañón, Jason A. Tourville, Mikhail Panko, Robert Law, Steven A. Siebert, Jess Bartels, Dinal Andreasen, Princewill Ehirim, Hui Mao, Philip R. Kennedy
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0149019

Prefrontal Neurons Encode Actions and Outcomes in Conjunction with Spatial Location in Rats Performing a Dynamic Delayed Non-Match to Position Task
Cited by: 12
Author(s): Kristen D. Onos, Miranda J. Francoeur, Benjamin A. Wormwood, Rikki L.A. Miller, Brett M. Gibson, Robert G. Mair
Software Mentions: 1
Published: over 10 years ago

10.1107/S1399004714005422

Structural characterization of the apo form and NADH binary complex of human lactate dehydrogenase
Cited by: 22
Author(s): Sally Dempster, Stephen Harper, John E. Moses, Ingrid Dreveny
Software Mentions: 1
Published: over 12 years ago

10.1016/j.celrep.2016.01.061

Sharp-Wave Ripples Orchestrate the Induction of Synaptic Plasticity during Reactivation of Place Cell Firing Patterns in the Hippocampus
Cited by: 120
Author(s): Josef H.L.P. Sadowski, Matthew W. Jones, Jack R. Mellor
Software Mentions: 1
Published: over 10 years ago

10.1107/S1399004713027806

The structures of the kinase domain and UBA domain of MPK38 suggest the activation mechanism for kinase activity
Cited by: 9
Author(s): Yong Soon Cho, Je Hyun Yoo, Sumin Park, Hyun Soo Cho
Software Mentions: 1
Published: over 12 years ago

10.1038/s42003-021-02248-1

Inhibitory neurons in the superior colliculus mediate selection of spatially-directed movements
Cited by: 18
Author(s): Jaclyn Essig, Joshua B Hunt, Gidon Felsen
Software Mentions: 1
Published: about 5 years ago

10.15252/embj.2019104150

Splice‐dependent trans‐synaptic <scp>PTP</scp> δ– <scp>IL</scp> 1 <scp>RAPL</scp> 1 interaction regulates synapse formation and non‐ <scp>REM</scp> sleep
Cited by: 17
Author(s): Haram Park, Yeonsoo Choi, Hwajin Jung, Seoyeong Kim, Suho Lee, Hyemin Han, Hanseul Kweon, Suwon Kang, Woong Seob Sim, Frank Koopmans, Esther Yang, Hyun Kim, August B. Smit, Yong Chul Bae, Eunjoon Kim
Software Mentions: 1
Published: over 6 years ago

10.1107/S1399004714011183

BuD, a helix–loop–helix DNA-binding domain for genome modification
Cited by: 23
Author(s): Stefano Stella, Rafael Molina, Blanca López-Méndez, Alexandre Juillerat, Claudia Bertonati, Fayza Daboussi, Ramón Campos-Olivas, Phillippe Duchateau, Guillermo Montoya
Software Mentions: 1
Published: about 12 years ago

10.3389/fnbeh.2016.00123

Subthalamic and Cortical Local Field Potentials Associated with Pilocarpine-Induced Oral Tremor in the Rat
Cited by: 3
Author(s): Lauren L. Long, Samantha J. Podurgiel, Aileen F. Haque, Emily L. Errante, James J. Chrobak, John D. Salamone
Software Mentions: 1
Published: about 10 years ago

10.1107/S0907444908044296

Crystallographic model quality at a glance
Cited by: 92
Author(s): Ludmila Urzhumtseva, Pavel V. Afonine, Paul D. Adams, Alexandre Urzhumtsev
Software Mentions: 1
Published: over 17 years ago

10.3389/fnbeh.2013.00202

Dynamic NMDAR-mediated properties of place cells during the object place memory task
Cited by: 11
Author(s): Thomas W. Faust, Sergio Robbiati, T. Huerta, Patricio T. Huerta
Software Mentions: 1
Published: over 13 years ago

10.3389/fncel.2017.00239

Methodological Approach for Optogenetic Manipulation of Neonatal Neuronal Networks
Cited by: 30
Author(s): Sebastian H. Bitzenhofer, Joachim Ahlbeck, Ileana L. Hanganu‐Opatz
Software Mentions: 1
Published: about 9 years ago

10.3389/fnins.2015.00425

A novel versatile hybrid infusion-multielectrode recording (HIME) system for acute drug delivery and multisite acquisition of neuronal activity in freely moving mice
Cited by: 9
Author(s): Oleg Senkov, Andrey Mironov, Alexander Dityatev
Software Mentions: 1
Published: almost 11 years ago

10.1107/S0907444911050682

Structural features and kinetic characterization of alanine racemase fromStaphylococcus aureus(Mu50)
Cited by: 20
Author(s): Emma Rose Scaletti, Sylvia R. Luckner, Kurt L. Krause
Software Mentions: 1
Published: over 14 years ago

10.1107/S139900471401606X

Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease
Cited by: 10
Author(s): Chen Shao, Chengliang Wang, Jianye Zang
Software Mentions: 1
Published: about 12 years ago

10.3389/fphar.2018.01439

Acute Low Alcohol Disrupts Hippocampus-Striatum Neural Correlate of Learning Strategy by Inhibition of PKA/CREB Pathway in Rats
Cited by: 23
Author(s): Wei Sun, Xiaoliang Li, Changyuan Tang, An Liu
Software Mentions: 1
Published: over 7 years ago

10.3389/fnsys.2019.00022

Unsupervised Temporal Contiguity Experience Does Not Break the Invariance of Orientation Selectivity Across Spatial Frequency
Cited by: 3
Author(s): Els Crijns, Dzmitry A. Kaliukhovich, Lara Vankelecom, Hans Op de Beeck
Software Mentions: 1
Published: over 7 years ago

10.1107/S0907444908040006

Model-building strategies for low-resolution X-ray crystallographic data
Cited by: 21
Author(s): Anjum M. Karmali, Tom L. Blundell, Nicholas Furnham
Software Mentions: 1
Published: over 17 years ago

10.7554/eLife.55694

The wtf4 meiotic driver utilizes controlled protein aggregation to generate selective cell death
Cited by: 22
Author(s): Nicole L. Nuckolls, Anthony C. Mok, Jeffrey J. Lange, Kexi Yi, Tejbir S. Kandola, Andrew M. Hunn, Scott McCroskey, Julia L Snyder, María Angélica Bravo Núñez, Melainia McClain, Sean A. McKinney, Christopher J. Wood, Randal Halfmann, Sarah E Zanders
Software Mentions: 1
Published: almost 6 years ago

10.1107/S2059798318012913

High-throughput quantum-mechanics/molecular-mechanics (ONIOM) macromolecular crystallographic refinement withPHENIX/DivCon: the impact of mixed Hamiltonian methods on ligand and protein structure
Cited by: 18
Author(s): O.Y. Borbulevych, Roger I. Martin, Lance M. Westerhoff
Software Mentions: 1
Published: almost 8 years ago

10.3390/antibiotics10030304

Genomic Background and Phylogeny of cfiA-Positive Bacteroides fragilis Strains Resistant to Meropenem-EDTA
Cited by: 6
Author(s): Sylvia Valdezate, Fernando Cobo, Sara Monzón, María José Medina, Ángel Zaballos, Isabel Cuesta, Pilar Villalón
Software Mentions: 1
Published: over 5 years ago

10.1107/S2059798315019269

Can I solve my structure by SAD phasing? Anomalous signal in SAD phasing
Cited by: 31
Author(s): Thomas C. Terwilliger, G. Bunkóczi, Li Wei Hung, Peter H. Zwart, Janet L. Smith, D.L. Akey, Paul D. Adams
Software Mentions: 1
Published: over 10 years ago

10.1107/S2059798316018210

Polder maps: improving OMIT maps by excluding bulk solvent
Cited by: 474
Author(s): Dorothée Liebschner, Pavel V. Afonine, Nigel W. Moriarty, Billy K. Poon, Oleg Sobolev, Thomas C. Terwilliger, Paul D. Adams
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8060900

Molecular Characterization and Antimicrobial Susceptibilities of Nocardia Species Isolated from the Soil; A Comparison with Species Isolated from Humans
Cited by: 4
Author(s): Gema Carrasco, Sara Monzón, María San Segundo, E García, Noelia Garrido, María José Medina, Pilar Villalón, Ana S. Ramírez, Pilar Jiménez, Isabel Cuesta, Sylvia Valdezate
Software Mentions: 1
Published: about 6 years ago

10.3390/microorganisms7050113

Nontuberculous Mycobacteria Persistence in a Cell Model Mimicking Alveolar Macrophages
Cited by: 10
Author(s): Susana Sousa, Vítor Borges, Inês João, João Paulo Gomes, Luísa Jordão
Software Mentions: 1
Published: over 7 years ago

10.1107/S2059798316002837

XModeScore: a novel method for accurate protonation/tautomer-state determination using quantum-mechanically driven macromolecular X-ray crystallographic refinement
Cited by: 14
Author(s): O.Y. Borbulevych, Roger I. Martin, Ian J. Tickle, Lance M. Westerhoff
Software Mentions: 1
Published: over 10 years ago

10.3390/pathogens9050363

Identification of Transmission Routes of Campylobacter and On-Farm Measures to Reduce Campylobacter in Chicken
Cited by: 22
Author(s): Sara Frosth, Oskar Karlsson Lindsjö, Adnan Niazi, Lise-Lotte Fernström, Ingrid Hansson
Software Mentions: 1
Published: over 6 years ago

10.3390/pathogens10050591

A Nosocomial Outbreak of Invasive Listeriosis in An Italian Hospital: Epidemiological and Genomic Features
Cited by: 12
Author(s): Valeria Russini, Martina Spaziante, T. Zottola, Anna Giovanna Fermani, Gina Di Giampietro, Giovanni Blanco, Paolo Fabietti, Riccardo Marrone, Roberta Parisella, Sergio Parrocchia, Teresa Bossù, Stefano Bilei, Maria Laura De Marchis
Software Mentions: 1
Published: over 5 years ago

10.1038/s41396-020-00819-4

Plasmid- and strain-specific factors drive variation in ESBL-plasmid spread in vitro and in vivo
Cited by: 59
Author(s): Fabienne Benz, Jana S. Huisman, Erik Bakkeren, Joana Anuschka Herter, Tanja Stadler, Martin Ackermann, Médéric Diard, Adrian Egli, Alex R. Hall, Wolf‐Dietrich Hardt, Sebastian Bonhoeffer
Software Mentions: 1
Published: almost 6 years ago