10.1107/S2052252520005709

Structural definition of polyspecific compensatory ligand recognition by P-glycoprotein
Cited by: 23
Author(s): Christina A. Le, Daniel S. Harvey, Stephen G. Aller
Software Mentions: 1
Published: about 6 years ago

10.1107/S2052252517012349

The potential of hexatungstotellurate(VI) to induce a significant entropic gain during protein crystallization
Cited by: 29
Author(s): Christian Molitor, Aleksandar Bijelic, Annette Rompel
Software Mentions: 1
Published: almost 9 years ago

10.1107/S2052252520000081

Estimation of high-order aberrations and anisotropic magnification from cryo-EM data sets in <i>RELION</i>-3.1
Cited by: 517
Author(s): Jasenko Zivanov, Takanori Nakane, S.H.W. Scheres
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252519014416

Charge density view on bicalutamide molecular interactions in the monoclinic polymorph and androgen receptor binding pocket
Cited by: 8
Author(s): Alexander A. Korlyukov, Maura Malińska, Анна В. Вологжанина, Goizman, Damian Trzybiński, Krzysztof Woźniak
Software Mentions: 1
Published: over 6 years ago

10.1107/S2052252520008520

The susceptibility of disulfide bonds towards radiation damage may be explained by S...O interactions
Cited by: 8
Author(s): Rajasri Bhattacharyya, Jesmita Dhar, Shubhra Ghosh Dastidar, Pinak Chakrabarti, M.S. Weiss
Software Mentions: 1
Published: about 6 years ago

10.7150/ijbs.59149

Development and application of therapeutic antibodies against COVID-19
Cited by: 41
Author(s): Ning Lin, Hamza B. Abagna, Qianhu Jiang, Siqi Liu, Jian Huang
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.62808

BC-N102 suppress breast cancer tumorigenesis by interfering with cell cycle regulatory proteins and hormonal signaling, and induction of time-course arrest of cell cycle at G1/G0 phase
Cited by: 13
Author(s): Bashir Lawal, Yi Chun Kuo, Alexander T.H. Wu, Hsu-Shan Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-019-1207-y

A low-molecular-weight compound exerts anticancer activity against breast and lung cancers by disrupting EGFR/Eps8 complex formation
Cited by: 10
Author(s): Meifang Li, Jilong Yang, Lenghe Zhang, Sanfang Tu, Xuan Zhou, Ze Tan, Weijun Zhou, Yanjie He, Yuhua Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s13046-021-02060-z

The Anterior GRadient (AGR) family proteins in epithelial ovarian cancer
Cited by: 6
Author(s): Delphine Fessart, Jacques Robert, Cécile Hartog, Éric Chevet, Frédéric Delom, Guillaume Babin
Software Mentions: 1
Published: about 5 years ago

10.1084/jem.20200061

A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity
Cited by: 16
Author(s): Elaine Thai, Giulia Costa, Anna Weyrich, Rajagopal Murugan, David Oyen, Yevel Flores-García, Katherine Prieto, Alexandre Bosch, Angelo Valleriani, Nicholas C. Wu, Tossapol Pholcharee, S.W. Scally, Ian A. Wilson, Hedda Wardemann, Jean-Philippe Julien, Elena A. Levashina
Software Mentions: 1
Published: about 6 years ago

10.1084/jem.20210236

Broad and potent neutralizing human antibodies to tick-borne flaviviruses protect mice from disease
Cited by: 17
Author(s): Marianna Agudelo, Martin Palus, Jennifer R. Keeffe, Filippo Bianchini, Pavel Svoboda, Jiřı́ Salát, Avery Peace, Anna Gazumyan, Melissa Cipolla, Tania Kapoor, Francesca Guidetti, Kai-Hui Yao, Jana Elsterová, Dana Teislerová, Aleš Chrdle, Václav Hönig, Thiago Y. Oliveira, Anthony P. West, Yu E. Lee, Charles M. Rice, Margaret R. MacDonald, Pamela J. Björkman, Daniel Růžek, Davide F. Robbiani, Michel C. Nussenzweig
Software Mentions: 1
Published: over 5 years ago

10.3390/jof6040344

Hex1, the Major Component of Woronin Bodies, Is Required for Normal Development, Pathogenicity, and Stress Response in the Plant Pathogenic Fungus Verticillium dahliae
Cited by: 8
Author(s): Vasileios Vangalis, Ioannis Papaioannou, Emmanouil A. Markakis, Michael Knop, Milton A. Typas
Software Mentions: 1
Published: over 5 years ago

10.3390/jof7010021

Interacting with Hemoglobin: Paracoccidioides spp. Recruits hsp30 on Its Cell Surface for Enhanced Ability to Use This Iron Source
Cited by: 4
Author(s): Aparecido Ferreira de Souza, Mariana Vieira Tomazett, Kleber Santiago Freitas e Silva, Juliana Santana de Curcio, Christie Ataídes Pereira, Lílian Cristiane Baeza, Juliano D. Paccez, Relber Aguiar Gonçales, Fernando Rodrigues, Maristela Pereira, Célia Maria de Almeida Soares
Software Mentions: 1
Published: over 5 years ago

10.1099/vir.0.065664-0

Vaccinia virus virulence factor N1 can be ubiquitylated on multiple lysine residues
Cited by: 18
Author(s): Carlos Maluquer de Motes, Torben Schiffner, Rebecca P. Sumner, Geoffrey L. Smith
Software Mentions: 1
Published: almost 12 years ago

10.1099/vir.0.000078

VP22 core domain from Herpes simplex virus 1 reveals a surprising structural conservation in both the Alpha- and Gammaherpesvirinae subfamilies
Cited by: 26
Author(s): Kelly Hew, Sue-Li Dahlroth, Lucy Xin Pan, Tobias Cornvik, P. Nordlund
Software Mentions: 1
Published: about 11 years ago

10.1099/jgv.0.000859

Molecular cloning of porcine Siglec-3, Siglec-5 and Siglec-10, and identification of Siglec-10 as an alternative receptor for porcine reproductive and respiratory syndrome virus (PRRSV)
Cited by: 25
Author(s): Jiexiong Xie, Isaura Christiaens, Bo Yang, Wander Van Breedam, Tingting Cui, Hans Nauwynck
Software Mentions: 1
Published: about 9 years ago

10.1099/jgv.0.001128

Exchange of amino acids in the H1-haemagglutinin to H3 residues is required for efficient influenza A virus replication and pathology in Tmprss2 knock-out mice
Cited by: 9
Author(s): Ruth L. O. Lambertz, Jan Pippel, Ingo Gerhauser, Heike Kollmus, Darisuren Anhlan, Eike R. Hrincius, J. Krausze, Nora Kühn, Klaus Schughart
Software Mentions: 1
Published: almost 8 years ago

10.1186/s43141-020-00105-y

In silico characterization and structural modeling of bacterial metalloprotease of family M4
Cited by: 15
Author(s): Rajnee Hasan, Md. Nazmul Haq Rony, Rasel Ahmed
Software Mentions: 1
Published: over 5 years ago

10.1186/s43141-021-00160-z

An immunoinformatics approach for the design of a multi-epitope vaccine targeting super antigen TSST-1 of Staphylococcus aureus
Cited by: 15
Author(s): Harish Babu Kolla, Chakradhar Tirumalasetty, Krupanidhi Sreerama, Vijaya Sai Ayyagari
Software Mentions: 1
Published: over 5 years ago

10.1186/s43141-021-00217-z

Genome-wide characterization and expression profiling of the Phospholipase C (PLC) gene family in three orchids of economic importance
Cited by: 5
Author(s): Madhvi Kanchan, Thakku R. Ramkumar, . Himani, Jaspreet K. Sembi
Software Mentions: 1
Published: about 5 years ago

10.1155/2018/8953217

Clinical, Genetics, and Bioinformatic Characterization of Mutations Affecting an Essential Region of <i>PLS3</i> in Patients with BMND18
Cited by: 8
Author(s): Ting Chen, Haiying Wu, Chenxi Zhang, Jiarong Feng, Linqi Chen, Rongrong Xie, Fengyun Wang, Xiuli Chen, Huiting Zhou, Haixiang Sun, Fei Xiao
Software Mentions: 1
Published: almost 8 years ago

10.1155/2019/9062032

A Novel Pentapeptide Inhibitor Reduces Amyloid Deposit Formation by Direct Interaction with hIAPP
Cited by: 12
Author(s): Yue Shi, Wu Lv, Ao Jiao, Chengshuo Zhang, Jialin Zhang
Software Mentions: 1
Published: over 7 years ago

10.1155/2012/369740

Characterization of Autoantibodies against the E1 Subunit of Branched-Chain 2-Oxoacid Dehydrogenase in Patients with Primary Biliary Cirrhosis
Cited by: 2
Author(s): T. Mori, Hiromasa Ohira, Masashi Kuroda, Masaki Kato, Yoshiki Yamaguchi, Hideo Kochi
Software Mentions: 1
Published: over 14 years ago

10.1016/j.ijms.2012.08.032

A tale of a tail: Structural insights into the conformational properties of the polyglutamine protein ataxin-3
Cited by: 15
Author(s): Charlotte A. Scarff, Alessandro Sicorello, Ricardo J. Tomé, Sandra Macedo-Ribeiro, Alison E. Ashcroft, Sheena E. Radford
Software Mentions: 1
Published: about 13 years ago

10.1155/2014/630807

A Predictive HQSAR Model for a Series of Tricycle Core Containing MMP-12 Inhibitors with Dibenzofuran Ring
Cited by: 5
Author(s): Jamal Shamsara, Ahmad Shahir-Sadr
Software Mentions: 1
Published: over 11 years ago

10.7150/ijms.46231

Investigation of Binding Affinity between Potential Antiviral Agents and PB2 Protein of Influenza A: Non-equilibrium Molecular Dynamics Simulation Approach
Cited by: 4
Author(s): Tri Pham, Hoang Linh Nguyen, Tuyn Phan-Toai, Hung Van Nguyen
Software Mentions: 1
Published: over 6 years ago

10.1155/2014/918143

The TIR Domain Containing Locus of<i>Enterococcus faecalis</i>Is Predominant among Urinary Tract Infection Isolates and Downregulates Host Inflammatory Response
Cited by: 13
Author(s): Thomas Kraemer, Orlando Daniel Quintanar Haro, Eugen Domann, Trinad Chakraborty, Svetlin Tchatalbachev
Software Mentions: 1
Published: over 12 years ago

10.1155/2017/4018398

Gene Expression and Molecular Characterization of a Xylanase from Chicken Cecum Metagenome
Cited by: 26
Author(s): Hind Al-Darkazali, Vithaya Meevootisom, Duangnate Isarangkul, Suthep Wiyakrutta
Software Mentions: 1
Published: over 9 years ago

10.22088/IJMCM.BUMS.8.3.179

Identification of PROS1 as a Novel Candidate Gene for Juvenile Retinitis Pigmentosa.
Cited by: 3
Author(s): Ata Bushehri, Davood Zare‐Abdollahi, Afagh Alavi, Alireza Dehghani, Mohammadreza Mousavimikala, Hamid Reza Khorram Khorshid
Software Mentions: 1
Published: over 7 years ago

10.22088/IJMCM.BUMS.8.4.258

Utilization of Whole Exome Sequencing in Lethal Form of Multiple Pterygium Syndrome: Identification of Mutations in Embryonal Subunit of Acetylcholine Receptor.
Cited by: 1
Author(s): T Nazari, Ali Rashidi–Nezhad, Maziar Ganji, Zahra Rezaei, Saeed Talebi, Nasrin Ghasemi, Javad Tavakkoly Bazzaz
Software Mentions: 1
Published: over 7 years ago

10.1038/s41368-020-00106-0

Novel MSX1 variants identified in families with nonsyndromic oligodontia
Cited by: 14
Author(s): Jinglei Zheng, Miao Yu, Haochen Liu, Tao Cai, Hailan Feng, Yang Liu, Dong Han
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ijpara.2017.12.003

Crystal structure of Brugia malayi venom allergen-like protein-1 (BmVAL-1), a vaccine candidate for lymphatic filariasis
Cited by: 16
Author(s): Rabih Darwiche, Fernanda Lugo, Claire Drurey, Koen Varossieau, G. Smant, Ruud H. P. Wilbers, Rick M. Maizels, Roger Schneiter, Oluwatoyin A. Asojo
Software Mentions: 1
Published: over 8 years ago

10.1016/j.ijpara.2018.01.002

Heligmosomoides polygyrus Venom Allergen-like Protein-4 (HpVAL-4) is a sterol binding protein
Cited by: 17
Author(s): Oluwatoyin A. Asojo, Rabih Darwiche, Selam Gebremedhin, G. Smant, Jose L. Lozano‐Torres, Claire Drurey, Jeroen Pollet, Rick M. Maizels, Roger Schneiter, Ruud H. P. Wilbers
Software Mentions: 1
Published: over 8 years ago

10.1016/j.ijpara.2012.04.005

Plasmodium subtilisin-like protease 1 (SUB1): Insights into the active-site structure, specificity and function of a pan-malaria drug target
Cited by: 46
Author(s): Chrislaine Withers‐Martinez, Catherine Suárez, Simone Fulle, Samir Satish Kher, Maria Penzo, Jean-Paul Ebejer, Konstantinos Koussis, Fiona Hackett, Aigars Jirgensons, Paul W. Finn, Michael J. Blackman
Software Mentions: 1
Published: over 14 years ago

10.52547/ibj.25.3.193

Stereochemical Trajectories of a Two-Component Regulatory System PmrA/B in a Colistin-Resistant Acinetobacter baumannii Clinical Isolate
Cited by: 1
Author(s): Mohammad Reza Kandehkar-Ghahraman, Hossein Hosseini-Nave, Omid Azizi, Mohammad Reza Shakibaie, Hamid Reza Mollaie, Samane Shakibaie
Software Mentions: 1
Published: over 5 years ago

10.22038/ijbms.2019.31972.7683

Effect of IL-2 co-expressed or co-inoculated with immuno-dominant epitopes from VP1 protein of FMD virus on immune responses in BALB/c mice.
Cited by: 0
Author(s): Mohammad Doosti, Mohammadreza Nassiri, Khadijeh Nasiri, Mojtaba Tahmoorespur, Saeed Zibaee
Software Mentions: 1
Published: over 7 years ago

10.22037/ijpr.2020.114123.14674

Synthesis and Antiplatelet Activity Evaluation of a Group of Novel Ethyl Acetoacetate Phenylhydrazone Derivatives.
Cited by: 1
Author(s): Sarveen Farhady, Farzad Kobarfard, Lotfollah Saghaie, Mahboubeh Rostami
Software Mentions: 1
Published: over 5 years ago

10.22037/ijpr.2019.15297.13037

Novel Small Molecules against Two Binding Sites of Wnt2 Protein as potential Drug Candidates for Colorectal Cancer: A Structure Based Virtual Screening Approach.
Cited by: 2
Author(s): Hourieh Kalhor, Hamzeh Rahimi, Mohammad Reza Akbari Eidgahi, Ladan Teimoori‐Toolabi
Software Mentions: 1
Published: over 6 years ago

10.3390/ijerph18031189

Nicotinic Acetylcholine Receptor Involvement in Inflammatory Bowel Disease and Interactions with Gut Microbiota
Cited by: 14
Author(s): Lola Rueda Ruzafa, José Luis Cedillo, Arik J. Hone
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/6718083

Immunoinformatics Approach for Epitope-Based Peptide Vaccine Design and Active Site Prediction against Polyprotein of Emerging Oropouche Virus
Cited by: 86
Author(s): Utpal Adhikari, Mourad Tayebi, Md. Mizanur Rahman
Software Mentions: 1
Published: almost 8 years ago

10.1155/2014/298145

A Micropolymorphism Altering the Residue Triad 97/114/156 Determines the Relative Levels of Tapasin Independence and Distinct Peptide Profiles for HLA-A<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:mrow><mml:mi>*</mml:mi></mml:mrow></mml:mrow></mml:math>24 Allotypes
Cited by: 13
Author(s): S Badrinath, Heike Kunze‐Schumacher, Rainer Blasczyk, Trevor Huyton, Christina Bade‐Doeding
Software Mentions: 1
Published: over 12 years ago

10.1155/2019/5902391

Computational Analysis of nsSNPs of <i>ADA</i> Gene in Severe Combined Immunodeficiency Using Molecular Modeling and Dynamics Simulation
Cited by: 11
Author(s): Soukaina Essadssi, Al Mehdi Krami, Lamiae Elkhattabi, Zouhair Elkarhat, Ghita Amalou, Houria Abdelghaffar, Hassan Rafiey, Abdelhamid Barakat
Software Mentions: 1
Published: almost 7 years ago

10.1155/2017/6412353

Vaccinomics Approach for Designing Potential Peptide Vaccine by Targeting<i>Shigella</i>spp. Serine Protease Autotransporter Subfamily Protein SigA
Cited by: 24
Author(s): Arafat Rahman Oany, Tahmina Pervin, Md. Younus Mia, M. Anwar Hossain, Mohammad Shahnaij, Shahin Mahmud, K. M. Kaderi Kibria
Software Mentions: 1
Published: over 9 years ago

10.1159/000492974

Surfactant Proteins A and D: Trimerized Innate Immunity Proteins with an Affinity for Viral Fusion Proteins
Cited by: 41
Author(s): André Freitas, Maximillian J. S. Phipps, Howard Clark, Chris Kriton Skylaris, Jens Madsen
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41388-018-0170-y

β-catenin knockdown promotes NHERF1-mediated survival of colorectal cancer cells: implications for a double-targeted therapy
Cited by: 17
Author(s): Concetta Saponaro, Sara Sergio, Antonio Coluccia, Maria De Luca, Giuseppe La Regina, Luca Mologni, Valeria Famiglini, Valentina Naccarato, Daniela Bonetti, Candice Gautier, Stefano Gianni, Daniele Vergara, Michel Salzet, Isabelle Fournier, Cecilia Bucci, Romano Silvestri, Carlo Gambacorti‐Passerini, Michele Maffia, Addolorata Maria Luce Coluccia
Software Mentions: 1
Published: over 8 years ago

10.1038/s41388-018-0213-4

NGR (Asn-Gly-Arg)-targeted delivery of coagulase to tumor vasculature arrests cancer cell growth
Cited by: 34
Author(s): Khaled Seidi, Rana Jahanban‐Esfahlan, Hassan Monhemi, Payman Zare, Babak Minofar, Amir Daei Farshchi Adli, Davoud Farajzadeh, Ramezan Behzadi, Mehran Mesgari Abbasi, Heidi A. Neubauer, Richard Moriggl, Nosratollah Zarghami, Tahereh Javaheri
Software Mentions: 1
Published: over 8 years ago

10.1038/s41388-018-0348-3

The dynamic and stress-adaptive signaling hub of 14-3-3: emerging mechanisms of regulation and context-dependent protein–protein interactions
Cited by: 227
Author(s): Karen L. Pennington, Chan Ty, Matthew P. Torres, JL Andersen
Software Mentions: 1
Published: about 8 years ago

10.1038/oncsis.2017.80

PRAS40 promotes NF-κB transcriptional activity through association with p65
Cited by: 14
Author(s): Guanghao Zhu, Qi Qi, Jonathan J. Havel, Z Li, Yuhong Du, X Zhang, Haian Fu
Software Mentions: 1
Published: almost 9 years ago

10.1515/jib-2018-0087

Computational Analysis of the Hypothetical Protein P9303_05031 from Marine Cyanobacterium <i>Prochlorococcus Marinus</i> MIT 9303
Cited by: 2
Author(s): P. V. Parvati Sai Arun, Vineetha Yarlagadda, Govindugari Vijaya Laxmi, Sumithra Salla
Software Mentions: 1
Published: over 6 years ago

10.1194/jlr.M071258

Characterization of homologous sphingosine-1-phosphate lyase isoforms in the bacterial pathogen Burkholderia pseudomallei
Cited by: 9
Author(s): Chris McLean, Jon Marles‐Wright, Rafael Custódio, Jonathan Lowther, A. Joseph Kennedy, Pollock Jacob, David J. Clarke, Alan R. Brown, Dominic J. Campopiano
Software Mentions: 1
Published: over 9 years ago

10.1194/jlr.RA120000748

Crystal structure of human lysosomal acid lipase and its implications in cholesteryl ester storage disease
Cited by: 8
Author(s): Francis Rajamohan, Allan R. Reyes, Meihua Tu, Nicole L. Nedoma, Lise R. Hoth, Adam G. Schwaid, Ravi G. Kurumbail, Jessica Ward, Seungil Han
Software Mentions: 1
Published: about 6 years ago

10.1194/jlr.M060673

Structural insights into the substrate specificity of two esterases from the thermophilic Rhizomucor miehei
Cited by: 30
Author(s): Shaoqing Yang, Zhen Qin, Xiaojie Duan, Qiaojuan Yan, Zhengqiang Jiang
Software Mentions: 1
Published: about 11 years ago

10.1155/2012/610937

Solubilization and Humanization of Paraoxonase-1
Cited by: 8
Author(s): Mohosin Sarkar, Christina Keventzidis Harsch, George T. Matic, Kathryn Hoffman, Joseph Norris, Tamara C. Otto, David E. Lenz, Douglas M. Cerasoli, Thomas J. Magliery
Software Mentions: 1
Published: over 14 years ago

10.1021/acs.jmedchem.1c00315

Double Arylation of the Indole Side Chain of Tri- and Tetrapodal Tryptophan Derivatives Renders Highly Potent HIV-1 and EV-A71 Entry Inhibitors
Cited by: 5
Author(s): Olaia Martí-Marí, Belén Martínez-Gualda, Sofía de la Puente-Secades, Alberto Mills, Ernesto Quesada, Rana Abdelnabi, Liang Sun, Arnaud Boonen, Sam Noppen, Johan Neyts, Dominique Schols, María‐José Camarasa, Federico Gago, Ana San‐Félix
Software Mentions: 1
Published: about 5 years ago

10.1021/acs.jmedchem.1c00206

Efficient Dimerization Disruption of <i>Leishmania infantum</i> Trypanothione Reductase by Triazole-phenyl-thiazoles
Cited by: 10
Author(s): Alejandro Revuelto, Héctor de Lucio, Juan Carlos García-Soriano, Pedro A. Sánchez‐Murcia, Federico Gago, Antonio Jiménez-Ruı́z, Marı́a-José Camarasa, Sonsoles Velázquez
Software Mentions: 1
Published: over 5 years ago

10.1021/acs.jmedchem.0c01783

Design and Evaluation of Peptide Dual-Agonists of GLP-1 and NPY2 Receptors for Glucoregulation and Weight Loss with Mitigated Nausea and Emesis
Cited by: 19
Author(s): Brandon T. Milliken, Clinton Elfers, Oleg G. Chepurny, Kylie S. Chichura, Ian R. Sweet, Tito Borner, Matthew R. Hayes, Bart C. De Jonghe, George G. Holz, Christian Roth, Robert P. Doyle
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jmb.2014.04.014

Structural Mechanisms Determining Inhibition of the Collagen Receptor DDR1 by Selective and Multi-Targeted Type II Kinase Inhibitors
Cited by: 77
Author(s): P. Canning, Tan Li, Kengyeh K. Chu, Sam W. Lee, Nathanael S. Gray, Alex N. Bullock
Software Mentions: 1
Published: about 12 years ago

10.1016/j.jmb.2009.12.047

The Indispensable N-Terminal Half of eIF3j/HCR1 Cooperates with its Structurally Conserved Binding Partner eIF3b/PRT1-RRM and with eIF1A in Stringent AUG Selection
Cited by: 76
Author(s): Latifa ElAntak, Susan Wagner, Anna Herrmannová, Martina Karásková, Edit Rutkai, Peter J. Lukavsky, Leoš Shivaya Valášek
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2010.06.025

Structure and Reactivity of Bacillus subtilis MenD Catalyzing the First Committed Step in Menaquinone Biosynthesis
Cited by: 33
Author(s): Alice Dawson, Minjiao Chen, Paul K. Fyfe, Zhihong Guo, William N. Hunter
Software Mentions: 1
Published: about 16 years ago

10.1016/j.jmb.2019.04.009

Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?
Cited by: 300
Author(s): Sirawit Ittisoponpisan, Suhail A. Islam, Tarun Khanna, Eman Alhuzimi, Alessia David, Michael J.E. Sternberg
Software Mentions: 1
Published: over 7 years ago

10.1016/j.jmb.2008.01.030

Structure of the Tandem Fibronectin Type 3 Domains of Neural Cell Adhesion Molecule
Cited by: 37
Author(s): Federico Carafoli, Jane L. Saffell, Erhard Hohenester
Software Mentions: 1
Published: over 18 years ago

10.1016/j.jmb.2015.03.010

The Pentameric Nucleoplasmin Fold Is Present in Drosophila FKBP39 and a Large Number of Chromatin-Related Proteins
Cited by: 29
Author(s): Christian Edlich‐Muth, Jean-Baptiste Artero, Philip Callow, Marcin R. Przewloka, Aleksandra A. Watson, Wei Zhang, David M. Glover, Janusz Dębski, Michał Dadlez, Adam Round, V. Trevor Forsyth, Ernest D. Laue
Software Mentions: 1
Published: over 11 years ago

10.1016/j.jmb.2011.01.034

The DNA-Binding Domain of Human PARP-1 Interacts with DNA Single-Strand Breaks as a Monomer through Its Second Zinc Finger
Cited by: 132
Author(s): Sebastian Eustermann, Hortense Videler, Ji‐Chun Yang, Paul T. Cole, Dominika T. Gruszka, Dmitry B. Veprintsev, David Neuhaus
Software Mentions: 1
Published: over 15 years ago

10.1016/j.jmb.2010.07.007

Allosteric Remodelling of the Histone H3 Binding Pocket in the Pygo2 PHD Finger Triggered by Its Binding to the B9L/BCL9 Co-Factor
Cited by: 40
Author(s): Teresa L. Miller, Trevor J. Rutherford, Christopher M. Johnson, Marc Fiedler, Mariann Bienz
Software Mentions: 1
Published: almost 16 years ago

10.1016/j.jmb.2019.06.003

CHAP: A Versatile Tool for the Structural and Functional Annotation of Ion Channel Pores
Cited by: 90
Author(s): Gianni Klesse, Shanlin Rao, Mark S.P. Sansom, Stephen J. Tucker
Software Mentions: 1
Published: about 7 years ago

10.1016/j.jmb.2009.01.069

Crystallographic and Cellular Characterisation of Two Mechanisms Stabilising the Native Fold of α1-Antitrypsin: Implications for Disease and Drug Design
Cited by: 34
Author(s): Bibek Gooptu, Elena Miranda, Irene Nobeli, Meera Mallya, A. Purkiss, Sarah C. Leigh Brown, Charlotte Summers, Russell L. Phillips, David A. Lomas, Tracey E. Barrett
Software Mentions: 1
Published: over 17 years ago

10.1016/j.jmb.2008.03.077

Thioredoxin A Active-Site Mutants Form Mixed Disulfide Dimers That Resemble Enzyme–Substrate Reaction Intermediates
Cited by: 20
Author(s): Thijs R. H. M. Kouwen, Juni Andréll, Rianne Schrijver, Jean-Yves F. Dubois, M.J. Maher, So Iwata, E.P. Carpenter, Jan Maarten van Dijl
Software Mentions: 1
Published: about 18 years ago

10.1016/j.jmb.2014.11.009

Distinct Features of Cap Binding by eIF4E1b Proteins
Cited by: 21
Author(s): Dorota Kubacka, Ricardo Núñez Miguel, Nicola Minshall, Edward Darżynkiewicz, Nancy Standart, Joanna Zuberek
Software Mentions: 1
Published: over 11 years ago

10.1016/j.jmb.2010.03.008

Structural and Functional Analysis of the Engineered Type I DNA Methyltransferase EcoR124INT
Cited by: 11
Author(s): James E. Taylor, Philip Callow, Anna Swiderska, Geoff Kneale
Software Mentions: 1
Published: over 16 years ago

10.1016/j.jmb.2011.03.033

Structural Analysis of a Novel Class of R–M Controller Proteins: C.Csp231I from Citrobacter sp. RFL231
Cited by: 12
Author(s): J.E. McGeehan, Simon Streeter, Sarah Thresh, James E. Taylor, M.B. Shevtsov, Geoff Kneale
Software Mentions: 1
Published: about 15 years ago

10.1016/j.jmb.2012.01.043

Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping
Cited by: 69
Author(s): James Allan, Ross M. Fraser, Tom Owen-Hughes, David Keszenman-Pereyra
Software Mentions: 1
Published: over 14 years ago

10.1016/j.jmb.2013.09.018

Subunit Positioning and Stator Filament Stiffness in Regulation and Power Transmission in the V1 Motor of the Manduca sexta V-ATPase
Cited by: 22
Author(s): Stephen P. Muench, Sjors H.W. Scheres, Markus Huss, Clair Phillips, Olga Vitavska, Helmut Wieczorek, John Trinick, Michael A. Harrison
Software Mentions: 1
Published: over 12 years ago

10.1016/j.jmb.2008.04.070

Ribonuclease A Homologues of the Zebrafish: Polymorphism, Crystal Structures of Two Representatives and their Evolutionary Implications
Cited by: 23
Author(s): K. Kazakou, Daniel E. Holloway, Stephen H. Prior, Vasanta Subramanian, K. Ravi Acharya
Software Mentions: 1
Published: about 18 years ago

10.1016/j.jmb.2011.02.020

Crystal Structure of R120G Disease Mutant of Human αB-Crystallin Domain Dimer Shows Closure of a Groove
Cited by: 106
Author(s): Alice R. Clark, C.E. Naylor, Claire Bagnéris, Nicholas H. Keep, C. Slingsby
Software Mentions: 1
Published: over 15 years ago

10.1016/j.jmb.2010.06.028

Interactions of the Melanocortin-4 Receptor with the Peptide Agonist NDP-MSH
Cited by: 20
Author(s): Kathryn Chapman, Gemma K. Kinsella, Alan Cox, Dan Donnelly, John B. C. Findlay
Software Mentions: 1
Published: about 16 years ago

10.1530/JME-16-0024

Antiestrogens: structure-activity relationships and use in breast cancer treatment
Cited by: 61
Author(s): Tatiana Traboulsi, Mohamed El Ezzy, James L. Gleason, Sylvie Mader
Software Mentions: 1
Published: over 9 years ago

10.1007/s00239-014-9639-7

One origin for metallo-β-lactamase activity, or two? An investigation assessing a diverse set of reconstructed ancestral sequences based on a sample of phylogenetic trees
Cited by: 21
Author(s): Rosanna Grace Alderson, Daniel Barker, John B. O. Mitchell
Software Mentions: 1
Published: almost 12 years ago

10.1186/1750-2187-8-3

Determinants at the N- and C-termini of Gα&lt;sub&gt;12&lt;/sub&gt; required for activation of Rho-mediated signaling
Cited by: 9
Author(s): Benjamin J. Ritchie, William C. Smolski, Ellyn R Montgomery, Elizabeth S. Fisher, Tina Young Choi, Calla Olson, Lori A Foster, Thomas E. Meigs
Software Mentions: 1
Published: over 13 years ago

10.7554/eLife.01211

Multiple interfaces between a serine recombinase and an enhancer control site-specific DNA inversion
Cited by: 20
Author(s): Meghan M. McLean, Yong Keun Chang, Gautam Dhar, John K. Heiss, Reid C. Johnson
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.54469

R-spondins engage heparan sulfate proteoglycans to potentiate WNT signaling
Cited by: 32
Author(s): Ramin Dubey, Peter van Kerkhof, Ingrid Jordens, Tomas Malinauskas, Ganesh V. Pusapati, Joseph K McKenna, Dan Li, Jan E. Carette, Mitchell Ho, Christian Siebold, Madelon M. Maurice, Andres M. Lebensohn, Rajat Rohatgi
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.13909

Quality control in oocytes by p63 is based on a spring-loaded activation mechanism on the molecular and cellular level
Cited by: 52
Author(s): Daniel Coutandin, Christian Osterburg, Ratnesh Kumar Srivastav, Manuela Sumyk, Sebastian Kehrloesser, Jakob Gebel, Marcel Tuppi, Jens Hannewald, Björn Malte Schäfer, E. Salah, Sebastian Mathea, Uta Müller-Kuller, James Doutch, Manuel Grez, Stefan Knapp, Volker Dötsch
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.11134

cryo-EM structures of the E. coli replicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease and τ
Cited by: 76
Author(s): Rafael Fernández-Leiro, Julian Conrad, Sjors H.W. Scheres, Meindert H. Lamers
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.01993

A conserved MCM single-stranded DNA binding element is essential for replication initiation
Cited by: 70
Author(s): C.A. Froelich, Sung-Myung Kang, L.B. Epling, Stephen P. Bell, Eric J. Enemark
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.12548

Structural basis for activation, assembly and membrane binding of ESCRT-III Snf7 filaments
Cited by: 118
Author(s): Shaogeng Tang, W. Mike Henne, Peter P. Borbat, Nicholas J. Buchkovich, Jack H. Freed, Yuxin Mao, J. Christopher Fromme, Scott D. Emr
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.17877

Exosome complex orchestrates developmental signaling to balance proliferation and differentiation during erythropoiesis
Cited by: 29
Author(s): Skye C McIver, Koichi R. Katsumura, Elsa Davids, Peng Liu, Yoon-A Kang, David T. Yang, Emery H. Bresnick
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.65699

Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2
Cited by: 13
Author(s): Yihu Xie, Bradley P. Clarke, Yong Joon Kim, Austin L. Ivey, Pate S. Hill, Yi Shi, Yi Ren
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.29154

Site-specific monoubiquitination downregulates Rab5 by disrupting effector binding and guanine nucleotide conversion
Cited by: 23
Author(s): Dong Hyuk Shin, Wooju Na, Ji Hyung Lee, Gyuhee Kim, Jiseok Baek, Seok Hee Park, Cheol Yong Choi, Sang-Ho Lee
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.64056

Molecular insights into substrate recognition and discrimination by the N-terminal domain of Lon AAA+ protease
Cited by: 13
Author(s): Shiou‐Ru Tzeng, Yin-Chu Tseng, Chien‐Chu Lin, Chia-Ying Hsu, Shing‐Jong Huang, Yi-Ting Kuo, Chin-Fu Chang
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.64411

Characterization and functional analysis of cathelicidin-MH, a novel frog-derived peptide with anti-septicemic properties
Cited by: 22
Author(s): Jinwei Chai, Xin Chen, Tiaofei Ye, Baishuang Zeng, Qingye Zeng, Jiena Wu, Barbora Kaščáková, Larissa Almeida Martins, Tatyana Prudniková, Ivana Kutá Smatanová, Michail Kotsyfakis, Xueqing Xu
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.27389

Asymmetric recognition of HIV-1 Envelope trimer by V1V2 loop-targeting antibodies
Cited by: 47
Author(s): Haoqing Wang, Harry B. Gristick, Louise Scharf, Anthony P. West, Rachel P. Galimidi, Michael S. Seaman, Natalia T. Freund, Michel C. Nussenzweig, Pamela J. Björkman
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.69444

Towards novel herbicide modes of action by inhibiting lysine biosynthesis in plants
Cited by: 15
Author(s): Tatiana P. Soares da Costa, Cody J Hall, Santosh Panjikar, Jessica A Wyllie, Rebecca M. Christoff, Saadi Bayat, Mark D. Hulett, Belinda M. Abbott, Anthony R. Gendall, Matthew A. Perugini
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.30395

Architecture of TAF11/TAF13/TBP complex suggests novel regulation properties of general transcription factor TFIID
Cited by: 27
Author(s): Kapil Gupta, Aleksandra A. Watson, Tiago Baptista, Elisabeth Scheer, A. Chambers, Christine Koehler, Juan Zou, Ima Obong-Ebong, Eaazhisai Kandiah, Arturo Temblador, Adam Round, Éric Forest, Petr Man, Christoph Bieniossek, Ernest D. Laue, Edward A. Lemke, Juri Rappsilber, Carol V. Robinson, Didier Devys, Làszlò Tora, Imre Berger
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.45343

Enterococcus faecium secreted antigen A generates muropeptides to enhance host immunity and limit bacterial pathogenesis
Cited by: 54
Author(s): byungchul Kim, Yen‐Chih Wang, Charles W Hespen, Juliel Espinosa, Jeanne Salje, Kavita J. Rangan, Deena A. Oren, Jin Young Kang, Virginia A. Pedicord, Howard C. Hang
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.51420

Molecular basis for catabolism of the abundant metabolite trans-4-hydroxy-L-proline by a microbial glycyl radical enzyme
Cited by: 12
Author(s): Lindsey R. F. Backman, Yung T. Huang, Mary C. Andorfer, Brian Gold, Ronald T. Raines, Emily P. Balskus, Catherine L. Drennan
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.65005

Structure of HIV-1 gp41 with its membrane anchors targeted by neutralizing antibodies
Cited by: 12
Author(s): Christophe Caillat, Delphine Guilligay, Johana Torralba, Nikolas Friedrich, José L. Nieva, Alexandra Trkola, Christophe Chipot, François Dagognet, Winfríed Weissenhorn
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.66165

Autism-associated SHANK3 missense point mutations impact conformational fluctuations and protein turnover at synapses
Cited by: 11
Author(s): Michael Bucher, Stephan Niebling, Yang Han, Dmitry Molodenskiy, Fatemeh Hassani Nia, Hans‐Jürgen Kreienkamp, Dmitri I. Svergun, Eunjoon Kim, Alla S. Kostyukova, Michael R. Kreutz, Marina Mikhaylova
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.06421

The C-terminal region of the motor protein MCAK controls its structure and activity through a conformational switch
Cited by: 28
Author(s): Sandeep K. Talapatra, Bethany Harker, Julie Welburn
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.60048

Elongation inhibitors do not prevent the release of puromycylated nascent polypeptide chains from ribosomes
Cited by: 20
Author(s): Benjamin D. Hobson, Linghao Kong, Erik W. Hartwick, Ruben L Gonzalez, Peter A. Sims
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.52541

Targeted induction of a silent fungal gene cluster encoding the bacteria-specific germination inhibitor fumigermin
Cited by: 48
Author(s): Maria C. Stroe, Tina Netzker, Kirstin Scherlach, Thomas Krüger, Christian Hertweck, Vito Valiante, Axel A. Brakhage
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.53169

An ultralong CDRH2 in HCV neutralizing antibody demonstrates structural plasticity of antibodies against E2 glycoprotein
Cited by: 19
Author(s): Andrew I. Flyak, Stormy Ruiz, Jordan Salas, Semi Rho, Justin R. Bailey, Pamela J. Björkman
Software Mentions: 1
Published: over 6 years ago