10.1038/s41598-020-77520-1

Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing
Cited by: 8
Author(s): Norbert Moldován, Gábor Torma, Gábor Gulyás, Ákos Hornyák, Zoltán Zádori, Victoria A Jefferson, Zsolt Csabai, Miklós Boldogkői, Dóra Tombácz, Florencia Meyer, Zsolt Boldogköi
Software Mentions: 4
Published: over 5 years ago

10.1007/s00239-020-09939-z

A Continuum of Evolving De Novo Genes Drives Protein-Coding Novelty in Drosophila
Cited by: 51
Author(s): Brennen Heames, Julia Schmitz, Erich Bornberg‐Bauer
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22157810

Identification of Rhythmically Expressed LncRNAs in the Zebrafish Pineal Gland and Testis
Cited by: 4
Author(s): Shital Kumar Mishra, Taole Liu, Han Wang
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02674-1

Genomic characterization of rare molecular subclasses of hepatocellular carcinoma
Cited by: 4
Author(s): Jeffrey S. Damrauer, Markia A. Smith, Vonn Walter, Aatish Thennavan, Lisle E. Mose, Sara R. Selitsky, Katherine A. Hoadley
Software Mentions: 4
Published: almost 5 years ago

10.2471/BLT.20.264044

Impact of COVID-19 response on global surgical volumes: an ongoing observational study
Cited by: 17
Author(s): Vikas N O’Reilly-Shah, Wil Van Cleve, David P. Long, Vanessa Moll, Faye M. Evans, Jacob Sunshine, Nicholas J Kassebaum, Ewen M Harrison, Craig S. Jabaley
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00122-021-03798-y

Quantitative trait locus mapping combined with variant and transcriptome analyses identifies a cluster of gene candidates underlying the variation in leaf wax between upland and lowland switchgrass ecotypes
Cited by: 8
Author(s): Peng Qi, Thomas H. Pendergast, Alexander Johnson, Bochra Amina Bahri, So‐Yeon Choi, Ali Missaoui, Katrien M. Devos
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0221209

When drug treatments bias genetic studies: Mediation and interaction
Cited by: 4
Author(s): Amand F. Schmidt, Hiddo J.L. Heerspink, Petra Denig, Chris Finan, Rolf H.H. Groenwold
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.3797

Sea ice meiofauna distribution on local to pan‐Arctic scales
Cited by: 24
Author(s): Bodil A. Bluhm, Haakon Hop, Mikko Vihtakari, Rolf Gradinger, Katrin Iken, I. A. Melnikov, Janne E. Søreide
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-021-98534-3

Cellular, molecular, and therapeutic characterization of pilocarpine-induced temporal lobe epilepsy
Cited by: 4
Author(s): Nicholas Henkel, Marissa A. Smail, Xiaojun Wu, Heather A. Enright, Nicholas O. Fischer, Hunter M. Eby, Robert E. McCullumsmith, Rammohan Shukla
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.703014

Distinct Endophytic Bacterial Communities Inhabiting Seagrass Seeds
Cited by: 14
Author(s): Flavia Tarquinio, Océane Attlan, Mathew A. Vanderklift, Oliver Berry, Andrew Bissett
Software Mentions: 4
Published: almost 5 years ago

10.1155/2020/7090918

Chinese Emergency Event Recognition Using Conv-RDBiGRU Model
Cited by: 5
Author(s): Haoran Yin, Jinxuan Cao, Luzhe Cao, Guodong Wang
Software Mentions: 4
Published: about 6 years ago

10.1093/bioinformatics/btx083

<i>nala</i>: text mining natural language mutation mentions
Cited by: 18
Author(s): Juan Miguel Cejuela, Aleksandar Bojchevski, Carsten Uhlig, Rustem Bekmukhametov, Sanjeev Kumar Karn, Shpend Mahmuti, Ashish Baghudana, Ankit Dubey, Venkata Satagopam, Burkhard Rost
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-019-6043-0

Exploration of tissue-specific gene expression patterns underlying timing of breeding in contrasting temperature environments in a song bird
Cited by: 12
Author(s): Veronika N. Laine, Irene Verhagen, A. Christa Mateman, Agata Pijl, Tony Williams, Phillip Gienapp, Kees van Oers, Marcel E. Visser
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-77028-8

PRMT1 inhibition induces differentiation of colon cancer cells
Cited by: 19
Author(s): A.N. Plotnikov, Noga Kozer, Galit Cohen, Sílvia Carvalho, Shirly Duberstein, Ofir Almog, Leonardo J. Solmesky, Khriesto A. Shurrush, Ilana Babaev, Benjamin Schwessinger, Shlomit Gilad, Meital Kupervaser, Yishai Levin, Michael Gershovits, Danny Ben-Avraham, Haim Barr
Software Mentions: 4
Published: over 5 years ago

10.1109/TPAMI.2018.2840695

DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation
Cited by: 262
Author(s): Guotai Wang, María A. Zuluaga, Wenqi Li, Rosalind Pratt, Premal A. Patel, Michaël Aertsen, Tom Doel, Anna L. David, Jan Deprest, Sébastien Ourselin, Tom Vercauteren
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-75999-2

Loss of PHF6 leads to aberrant development of human neuron-like cells
Cited by: 2
Author(s): Anna Fliedner, Anne Gregor, Fulvia Ferrazzi, Arif B. Ekici, Heinrich Sticht, Christiane Zweier
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-76025-1

Prediction of survival and recurrence in patients with pancreatic cancer by integrating multi-omics data
Cited by: 33
Author(s): Bin Baek, Hyunju Lee
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-74564-1

ScatLay: utilizing transcriptome-wide noise for identifying and visualizing differentially expressed genes
Cited by: 5
Author(s): Thuy Tien Bui, Daniel Lee, Kumar Selvarajoo
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.658988

Rock-Hosted Subsurface Biofilms: Mineral Selectivity Drives Hotspots for Intraterrestrial Life
Cited by: 15
Author(s): Caitlin P. Casar, Brittany R. Kruger, M. R. Osburn
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.710558

Construction and Validation of a Novel Immunosignature for Overall Survival in Uveal Melanoma
Cited by: 3
Author(s): Chufeng Gu, Xiaohong Gu, Yujie Wang, Zhixian Yao, Chuandi Zhou
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-020-07141-5

Genomic differences between the new Fusarium oxysporum f. sp. apii (Foa) race 4 on celery, the less virulent Foa races 2 and 3, and the avirulent on celery f. sp. coriandrii
Cited by: 9
Author(s): Peter M. Henry, Sukhwinder Kaur, Quyen Anh Tran Pham, Radwan Barakat, Samuel Brinker, Hannah Haensel, Oleg Daugovish, Lynn Epstein
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-70757-w

Circadian regulation of chemotherapy-induced peripheral neuropathic pain and the underlying transcriptomic landscape
Cited by: 17
Author(s): Hee Kee Kim, Sun Yeul Lee, Nobuya Koike, Eunju Kim, Marvin Wirianto, Mark J. Burish, Kazuhiro Yagita, Hyun Kyoung Lee, Zheng Chen, Jin Mo Chung, Salahadin Abdi, Seung Hee Yoo
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-020-3402-4

proMAD: semiquantitative densitometric measurement of protein microarrays
Cited by: 1
Author(s): Anna Jaeschke, Hagen Eckert, Laura J. Bray
Software Mentions: 4
Published: over 6 years ago

10.1186/s12935-021-01792-4

Identification of a prognostic and therapeutic immune signature associated with hepatocellular carcinoma
Cited by: 42
Author(s): Yanan Peng, Chang Liu, Mengting Li, Wenjie Li, Mengna Zhang, Xiang Jiang, Ying Chang, Lan Liu, Wei Fan, Qiu Zhao
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-76137-8

Evolution from adherent to suspension: systems biology of HEK293 cell line development
Cited by: 41
Author(s): Magdalena Malm, Rasool Saghaleyni, Magnus Lundqvist, Marco Giudici, Véronique Chotteau, Ray Field, Paul Varley, Diane Hatton, Luigi Grassi, Thomas Svensson, Jens Nielsen, Johan Rockberg
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-68450-z

Clinical significance of miR-1180-3p in hepatocellular carcinoma: a study based on bioinformatics analysis and RT-qPCR validation
Cited by: 9
Author(s): Zihan Zhou, Xiaoting Zhou, Yanji Jiang, Moqin Qiu, Xinmiao Liang, Qiuling Lin, Qin Guo, Cunli Nong, Rong‐Rui Huo, Qian Chen, Haizhou Liu, Yingchun Liu, Shao‐Liang Zhu, Mengyun Wang, Hongping Yu
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-65916-y

Alterations of transcriptome signatures in head trauma-related neurodegenerative disorders
Cited by: 13
Author(s): Hyesun Cho, Seung Jae Hyeon, Jong-Yeon Shin, Victor E. Alvarez, Thor D. Stein, Jung‐Hee Lee, Neil W. Kowall, Ann C. McKee, Hoon Ryu, Jeong-Sun Seo
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-57467-z

Transcriptome analysis of fibroblasts from schizophrenia patients reveals differential expression of schizophrenia-related genes
Cited by: 17
Author(s): Mitra Etemadikhah, Adnan Niazi, Lennart Wetterberg, Lars Feuk
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1008277

Structures of immature EIAV Gag lattices reveal a conserved role for IP6 in lentivirus assembly
Cited by: 42
Author(s): Robert A. Dick, Chaoyi Xu, Dustin R. Morado, Vladyslav Kravchuk, C.L. Ricana, Terri D. Lyddon, Arianna M. Broad, J. Ryan Feathers, Marc C. Johnson, Volker M. Vogt, Juan R. Perilla, John Briggs, F.K.M. Schur
Software Mentions: 4
Published: over 6 years ago

10.1186/s13195-016-0213-y

Using the Affiliate Stigma Scale with caregivers of people with dementia: psychometric evaluation
Cited by: 38
Author(s): Chih Cheng Chang, Jian Su, Chung‐Ying Lin
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12885-019-5863-2

Long term outcome after 48 Gy stereotactic ablative body radiotherapy for peripheral stage I non-small cell lung cancer
Cited by: 4
Author(s): Emilie Dubaere, M. Goffaux, Marie Wanet, Benoît Bihin, Céline Gheldof, A S Demoulin, A. Bolly, F. Bustin, Fabrice Duplaquet, P. E. Baugnée, M. Gustin, Vincent Hers, F. Maisin, Éric Marchand, Sebahat Ocak, Lionel Pirard, Oswald Vancutsem, Evelyne Van Neck, G Vandermoten, L. Zaharia, Vincent Remouchamps
Software Mentions: 4
Published: about 7 years ago

10.1186/s12885-021-08478-0

Ferroptosis-related gene signature predicts the prognosis in Oral squamous cell carcinoma patients
Cited by: 18
Author(s): Hongyu Li, Xiliu Zhang, Yi Chen, Yi He, Xun Chen, Wei Zhao, Dongsheng Yu
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-50045-y

Transgenerational inheritance of shuffled symbiont communities in the coral Montipora digitata
Cited by: 39
Author(s): Kate M. Quigley, Bette L. Willis, Carly D. Kenkel
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-48692-2

Efficient and specific oligo-based depletion of rRNA
Cited by: 41
Author(s): Amelie J. Kraus, Benedikt G. Brink, T. Nicolai Siegel
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-46353-y

Incense Burning is Associated with Human Oral Microbiota Composition
Cited by: 11
Author(s): Yvonne Vallès, Claire K. Inman, Brandilyn A. Peters, Laila Abdel Wareth, Abdishakur Abdulle, Habiba Alsafar, Fatme Al Anouti, Ayesha Al Dhaheri, Divya Galani, Muna Abdalla Mohamed Haji, Aisha Al Hamiz, Ayesha Al Hosani, Mohammed Al-Houqani, Abdulla AlJunaibi, Marina Kazim, Tomas Kirchhoff, Wael Al Mahmeed, Fatma Al-Maskari, Abdullah Alnaeemi, Naima Oumeziane, Ravichandran Ramasamy, Ann Marie Schmidt, Henri Vallès, Eiman Al Zaabi, Scott E. Sherman, Raghib Ali, Jiyoung Ahn, Richard B. Hayes
Software Mentions: 4
Published: about 7 years ago

10.1186/s12859-021-04180-x

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets
Cited by: 15
Author(s): Teresita M. Porter, Mehrdad Hajibabaei
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-15-91

Differential meta-analysis of RNA-seq data from multiple studies
Cited by: 88
Author(s): Andrea Rau, Guillemette Marot, Florence Jaffrézic
Software Mentions: 4
Published: over 12 years ago

10.1186/s12859-018-2489-3

A new sequence logo plot to highlight enrichment and depletion
Cited by: 43
Author(s): Kushal Kumar Dey, Dongyue Xie, Matthew Stephens
Software Mentions: 4
Published: over 7 years ago

10.1128/AEM.02470-17

Influence of Pig Farming on the Human Nasal Microbiota: Key Role of Airborne Microbial Communities
Cited by: 59
Author(s): Julia G. Kraemer, Alban Ramette, Suzanne Aebi, Anne Oppliger, Markus Hilty
Software Mentions: 4
Published: over 8 years ago

10.1093/aobpla/plv111

Climate change reduces nectar secretion in two common Mediterranean plants
Cited by: 45
Author(s): Krista Takkis, Thomas Tscheulin, Panagiotis Tsalkatis, Theodora Petanidou
Software Mentions: 4
Published: over 11 years ago

10.1186/s12920-016-0192-7

Integrative regression network for genomic association study
Cited by: 9
Author(s): Reddy Rani Vangimalla, Hyun-Hwan Jeong, Kyung-Ah Sohn
Software Mentions: 4
Published: about 10 years ago

10.1186/s12859-021-04235-z

Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics
Cited by: 11
Author(s): Jia You Lin, Bao Rong Juo, Yu Hsuan Yeh, Shu Hsuan Fu, Yi Ting Chen, Chien Lun Chen, Kun Wu
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-018-37813-y

Both anti-inflammatory and antiviral properties of novel drug candidate ABX464 are mediated by modulation of RNA splicing
Cited by: 41
Author(s): Audrey Vautrin, Laurent Manchon, Aude Garcel, Noëlie Campos, Laure Lapasset, Abdelhamid Mahdi Laaref, Roman Bruno, Marie Gislard, Emeric Dubois, Didier Scherrer, J Hartmut Ehrlich, Jamal Tazi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-31168-0

Marchantia liverworts as a proxy to plants’ basal microbiomes
Cited by: 41
Author(s): Luis David Alcaraz, Mariana Peimbert, Hugo R. Barajas, Ana Elena Dorantes-Acosta, John L. Bowman, Mario Arteaga-Vázquez
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-27476-0

Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis)
Cited by: 20
Author(s): Erin D. Scully, Scott M. Geib, Charles J. Mason, John E. Carlson, Ming Tien, Han Yi Chen, Chung‐Jui Tsai, Chung‐Jui Tsai, Kelli Hoover
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0098552

Identification of Glyceraldehyde 3-Phosphate Dehydrogenase Sequence and Expression Profiles in Tree Shrew (Tupaia belangeri)
Cited by: 5
Author(s): Yu Zheng, Qihui Wang, Chenxia Yun, Yingjun Wang, Wanli W. Smith, Jing Leng
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0150402

Trade-Offs between Growth Rate, Tree Size and Lifespan of Mountain Pine (Pinus montana) in the Swiss National Park
Cited by: 51
Author(s): Christof Bigler
Software Mentions: 4
Published: over 10 years ago

10.1016/j.ahj.2016.10.020

Inadequacy of existing clinical prediction models for predicting mortality after transcatheter aortic valve implantation
Cited by: 41
Author(s): Glen P. Martin, Matthew Sperrin, Peter Ludman, Mark de Belder, Chris P Gale, William D. Toff, Neil Moat, Uday Trivedi, Iain Buchan, Mamas A. Mamas
Software Mentions: 4
Published: over 9 years ago

10.18632/oncotarget.11038

Role of the immune system in the peritoneal tumor spread of high grade serous ovarian cancer
Cited by: 33
Author(s): Katharina Auer, Anna Bachmayr-Heyda, Nyamdelger Sukhbaatar, Stefanie Aust, Klaus G. Schmetterer, Samuel M. Meier, Christopher Gerner, Christoph Grimm, Reinhard Horvat, Dietmar Pils
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.ppat.1006391

Microbiota-induced peritrophic matrix regulates midgut homeostasis and prevents systemic infection of malaria vector mosquitoes
Cited by: 114
Author(s): Faye H. Rodgers, Mathilde Gendrin, Claudia A. S. Wyer, George K. Christophides
Software Mentions: 4
Published: about 9 years ago

10.1002/ece3.7134

Early evidence of natal‐habitat preference: Juvenile loons feed on natal‐like lakes after fledging
Cited by: 1
Author(s): Brian A. Hoover, Kristin M. Brunk, Gabriella L. Jukkala, Nathan Banfield, Andrew L. Rypel, Walter H. Piper
Software Mentions: 4
Published: over 5 years ago

10.1155/2017/8038460

Utilisation of Intermediate Care Units: A Systematic Review
Cited by: 40
Author(s): Joost D J Plate, Luke P. H. Leenen, Marijn Houwert, Falco Hietbrink
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pgen.1008900

A novel allele of ASY3 is associated with greater meiotic stability in autotetraploid Arabidopsis lyrata
Cited by: 25
Author(s): Paul J. Seear, Catherine L. Gregory, Darren Heavens, Roswitha Schmickl, Levi Yant, James D. Higgins
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.575207

Fungal Communities in Sediments Along a Depth Gradient in the Eastern Tropical Pacific
Cited by: 9
Author(s): Keilor Rojas‐Jimenez, Hans‐Peter Grossart, Erik E. Cordes, Jorge Cortés
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.5359

Rainfall and habitat interact to affect the condition of a wintering migratory songbird in The Bahamas
Cited by: 11
Author(s): Michael E. Akresh, David I. King, Peter P. Marra
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0240706

Breeding and hibernation of captive meadow jumping mice (Zapus hudsonius)
Cited by: 3
Author(s): Ethan A. Brem, Alyssa D. McNulty, William J. Israelsen
Software Mentions: 4
Published: over 5 years ago

10.1172/JCI94509

STAT5BN642H is a driver mutation for T cell neoplasia
Cited by: 52
Author(s): Hà Phạm, Barbara Maurer, Michaela Prchal-Murphy, Reinhard Grausenburger, Eva Grundschober, Tahereh Javaheri, Harini Nivarthi, Auke Boersma, Thomas Kolbe, Mohamed Elabd, Florian Halbritter, Jan Pěnčík, Zahra Kazemi, Florian Grebien, Markus Hengstschläger, Lukas Kenner, Stefan Kubicek, Matthias Farlik, Christoph Bock, Peter Valent, Mathias Müller, Thomas Rülicke, Veronika Sexl, Richard Moriggl
Software Mentions: 4
Published: over 8 years ago

10.1099/mgen.0.000569

Genomic and temporal analyses of Mycobacterium bovis in southern Brazil
Cited by: 7
Author(s): Rudielle de Arruda Rodrigues, Flábio R. Araújo, Alberto M. R. Dávila, Rodrigo Nestor Etges, Julian Parkhill, Andries J. van Tonder
Software Mentions: 4
Published: about 5 years ago

10.1111/jcmm.15569

LIX1 regulates YAP activity and controls gastrointestinal cancer cell plasticity
Cited by: 8
Author(s): Amandine Guérin, Delphine Martire, Eva Trenquier, Tom Lesluyes, Sébastien Sagnol, Marine Pratlong, Elise Lefebvre, Frédéric Chibon, Pascal de Santa Barbara, Sandrine Faure
Software Mentions: 4
Published: about 6 years ago

10.3390/plants9111492

Anachronic Fruit Traits and Natural History Suggest Extinct Megafauna Herbivores as the Dispersers of an Endangered Tree
Cited by: 0
Author(s): Diego Muñoz‐Concha, Karla Muñoz, Andrea P. Loayza
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12935-019-0953-4

Effect of hyperoside on cervical cancer cells and transcriptome analysis of differentially expressed genes
Cited by: 22
Author(s): Guo Wei, Hui Yu, Lu Zhang, Xiuwei Chen, Yunduo Liu, Yaoxian Wang, Yunyan Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1155/2018/2906292

A Simple Guideline to Assess the Characteristics of RNA-Seq Data
Cited by: 21
Author(s): Keun Hong Son, Sungryul Yu, Wonseok Shin, Kyudong Han, Keunsoo Kang
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12917-018-1406-3

Dynamic network measures reveal the impact of cattle markets and alpine summering on the risk of epidemic outbreaks in the Swiss cattle population
Cited by: 21
Author(s): Beatriz Vidondo, Bernhard Voelkl
Software Mentions: 4
Published: over 8 years ago

10.1186/s13073-021-00929-4

Haplotype-resolved germline and somatic alterations in renal medullary carcinomas
Cited by: 4
Author(s): Kar Tong Tan, Hyunji Kim, Jian Carrot‐Zhang, Yuxiang Zhang, Won Jun Kim, Guillaume Kugener, Jeremiah A. Wala, Thomas P. Howard, Yueh Yun, Rameen Beroukhim, Heng Li, Gavin Ha, Seth L. Alper, Elizabeth J. Perlman, Elizabeth Mullen, William C. Hahn, Matthew Meyerson, Andrew L. Hong
Software Mentions: 4
Published: about 5 years ago

10.1098/rspb.2021.0094

Drought-driven wildfire impacts on structure and dynamics in a wet Central Amazonian forest
Cited by: 20
Author(s): Aline Pontes‐Lopes, Camila V. J. Silva, Jos Barlow, Lorena M. Rincón, Wesley Augusto Campanharo, Cássio Alencar Nunes, Catherine Torres de Almeida, Celso Henrique Leite Silva Júnior, Henrique Luís Godinho Cassol, Ricardo Dalagnol, Scott C. Stark, Paulo Maurı́cio Lima de Alencastro Graça, Luiz E. O. C. Aragão
Software Mentions: 4
Published: about 5 years ago

10.1093/gbe/evaa094

piRNA and Transposon Dynamics in Drosophila: A Female Story
Cited by: 17
Author(s): Bastien Saint-Leandre, Pierre Capy, Aurélie Hua-Van, Jonathan Filée
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-021-02304-3

Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression
Cited by: 54
Author(s): Pan Gao, Qing Lyu, Amr R. Ghanam, Cícera R. Lazzarotto, Gregory A. Newby, Wei Zhang, Mi-Hyun Choi, Orazio J. Slivano, Kevin Holden, John Walker, Anastasia P. Kadina, Rob J. Munroe, Christian Abratte, John C. Schimenti, David R. Liu, Shengdar Q. Tsai, Xiaochun Long, Joseph M. Miano
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-019-1671-x

BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing
Cited by: 101
Author(s): Daniel Alpern, Vincent Gardeux, Julie Russeil, Bastien Mangeat, Antonio C. A. Meireles-Filho, Romane Breysse, David L. Hacker, Bart Deplancke
Software Mentions: 4
Published: over 7 years ago

10.1093/gbe/evy155

Pattern of DNA Methylation in Daphnia: Evolutionary Perspective
Cited by: 43
Author(s): Jouni Kvist, Camila Gonçalves Athanásio, Omid Shams Solari, James Brown, John K. Colbourne, Michael E. Pfrender, Leda Mirbahai
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0233912

Aboriginal artefacts on the continental shelf reveal ancient drowned cultural landscapes in northwest Australia
Cited by: 40
Author(s): Jonathan Benjamín, Michael J. O’Leary, Jo McDonald, Chelsea Wiseman, J. McCarthy, Emma Beckett, Patrick Morrison, Francis Stankiewicz, Jerem Leach, Jörg Hacker, Paul Baggaley, Katarina Jerbić, Madeline Fowler, John R. Fairweather, Peter Jeffries, Sean Ulm, Geoff Bailey
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: about 5 years ago

10.1186/s13059-015-0843-6

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR
Cited by: 291
Author(s): Wei Li, Johannes Köster, Xu Han, Chen Hao Chen, Tengfei Xiao, Jun S. Liu, Myles Brown, X. Shirley Liu
Software Mentions: 4
Published: over 10 years ago

10.3390/genes11090983

MicroRNAs Modulate the Pathogenesis of Alzheimer’s Disease: An In Silico Analysis in the Human Brain
Cited by: 12
Author(s): Agnese Gugliandolo, Luigi Chiricosta, Virginia Boccardi, Patrizia Mecocci, Placido Bramantı, Emanuela Mazzon
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2016.01744

Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals
Cited by: 17
Author(s): Erich M. Schwarz, Adrienne Roeder
Software Mentions: 4
Published: over 9 years ago

10.3389/fpls.2021.666310

Aux/IAA and ARF Gene Families in Salix suchowensis: Identification, Evolution, and Dynamic Transcriptome Profiling During the Plant Growth Process
Cited by: 9
Author(s): Suyun Wei, Yingnan Chen, Jing Hou, Yonghua Yang, Tongming Yin
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000214

Nonlinear phenotypic variation uncovers the emergence of heterosis in Arabidopsis thaliana
Cited by: 31
Author(s): François Vasseur, Louise Fouqueau, Dominique de Vienne, Thibault Nidelet, Cyrille Violle, Detlef Weigel
Software Mentions: 4
Published: over 7 years ago

10.1111/1365-2656.13272

Long‐distance natal dispersal is relatively frequent and correlated with environmental factors in a widespread raptor
Cited by: 12
Author(s): Hanna M. McCaslin, T. Trevor Caughlin, Julie A. Heath
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0217809

Using virtual reality and thermal imagery to improve statistical modelling of vulnerable and protected species
Cited by: 8
Author(s): Catherine Leigh, Grace Heron, Ella Wilson, Taylor Gregory, Samuel Clifford, J. Leith Holloway, Miles McBain, Felipé Gonzalez, James McGree, Ross Brown, Kerrie Mengersen, Erin E. Peterson
Software Mentions: 4
Published: over 6 years ago

10.1016/j.isci.2021.102783

AMPK activation reverts mouse epiblast stem cells to naive state
Cited by: 4
Author(s): Yajing Liu, Junko Yamane, Akito Tanaka, Wataru Fujibuchi, Jun Yamashita
Software Mentions: 4
Published: about 5 years ago

10.1172/jci.insight.141321

Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection
Cited by: 26
Author(s): Anil Dangi, Naveen Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B. Thorp, Xunrong Luo
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0234219

No fruits without color: Cross-modal priming and EEG reveal different roles for different features across semantic categories
Cited by: 1
Author(s): Georgette Argiris, Raffaella I. Rumiati, Davide Crepaldi
Software Mentions: 4
Published: over 5 years ago

10.1016/j.fsigen.2014.04.008

A global analysis of Y-chromosomal haplotype diversity for 23 STR loci
Cited by: 220
Author(s): Josephine Purps, Sabine Siegert, Sascha Willuweit, Marion Nagy, Cı́ntia Alves, Renato Salazar, Sheila M.T. Angustia, Lorna H. Santos, Katja Anslinger, Birgit Bayer, Qasim Ayub, Wei Wei, Yali Xue, Chris Tyler‐Smith, Miriam Baeta, Begoña Martı́nez-Jarreta, Balázs Egyed, Beate Balitzki, Sibylle Tschumi, David J. Ballard, Denise Syndercombe Court, Xinia Barrantes, Gerhard P. Bassler, T. Wiest, Burkhard Berger, Harald Niederstätter, Walther Parson, Carey Davis, Bruce Budowle, Helen Burri, Urs V. Borer, Christoph Koller, E.F. Carvalho, Patricia M. Domingues, Wafaa Takash Chamoun, Michael D. Coble, Carolyn R. Hill, Daniel Corach, Mariela Caputo, María Eugenia D’Amato, Sean Davison, Ronny Decorte, Maarten Larmuseau, Claudio Ottoni, Olga Rickards, Dalei Lu, Jiang Cheng-tao, Tadeusz Dobosz, Anna Jonkisz, William E. Frank, Ivana Furač, Christian Gehrig, Vincent Castella, Branka Gršković, Cordula Haas, Jana Wobst, Gavrilo Hadzic, Katja Drobnič, Katsuya Honda, Yiping Hou, Di Zhou, Yan Li, Shengping Hu, Shenglan Chen, Uta Dorothee Immel, Rüdiger Lessig, Zlatko Jakovski, Tanja Ilievska, Anja E. Klann, Cristina García, Peter de Knijff, Thirsa Kraaijenbrink, A. Kondili, P. Miniati, Maria Vouropoulou, Lejla Kovačević, Damir Marjanović, Iris Lindner, Issam Mansour, Mouayyad Al-Azem, Ansar El Andari, Miguel Marino, Sandra Furfuro, Laura Locarno, Pablo Martı́n, G.M. Luque, Antonio Alonso, Luís Souto Miranda, Helena Moreira, Natsuko Mizuno, Yasuki Iwashima, Rodrigo S.Moura Neto, T.L.S. Nogueira, Rosane Silva, Marina Nastainczyk-Wulf, Jeanett Edelmann, Michael Köhl, Shengjie Nie, Xianping Wang, Baowen Cheng, Carolina Núñez, Marian M. de Pancorbo, Jill K. Olofsson, Niels Morling, Valerio Onofri, Adriano Tagliabracci, Horolma Pamjav, Antónia Völgyi, Gusztáv Bárány, Ryszard Pawłowski, Agnieszka Maciejewska, Susi Pelotti, Witold Pepiński, Monica Abreu-Głowacka, C. Phillips, Jorge Cárdenas, Danel Rey-González, Antonio Salas, Francesca Brisighelli, Cristian Capelli, Ulises Toscanini, Andrea Piccinini, Marilidia Piglionica, Stefania Lonero Baldassarra, Rafał Płoski, Magdalena Konarzewska, Emila Jastrzebska, Carlo Robino, Antti Sajantila, Jukka U. Palo, Evelyn K. Guevara, Jazelyn M. Salvador, Maria Corazon A. De Ungria, Jae Joseph Russell B. Rodriguez, Ulrike Schmidt, Nicola Schlauderer, Pekka Saukko, Peter M. Schneider, Miriam Sirker, Kyoung Jin Shin, Yu Na Oh, Iulia Skitsa, Alexandra Ampati, Tobi Gail Smith, Lina Solis De Calvit, Vlastimil Stenzl, Thomas Capal, Andreas Tillmar, Helena Nilsson, Stefania Turrina, Domenico De Leo, Andrea Verzeletti, Venusia Cortellini, Jon H. Wetton, Gareth M. Gwynne, Mark A. Jobling, M.R. Whittle, Denilce R. Sumita, Paulina Wolańska-Nowak, R. Y. Y. Yong, Michael Krawczak, Michael Nothnagel, Lutz Roewer
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0137024

Modelling the Geographical Origin of Rice Cultivation in Asia Using the Rice Archaeological Database
Cited by: 93
Author(s): Fabio Silva, Chris J. Stevens, Alison Weisskopf, Cristina Castillo, Ling Qin, Andrew Bevan, Dorian Q. Fuller
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pntd.0003705

Tsetse Fly (G.f. fuscipes) Distribution in the Lake Victoria Basin of Uganda
Cited by: 25
Author(s): Albert Mugenyi, Nicola A. Wardrop, Peter M. Atkinson, Stephen J. Torr, Susan C. Welburn
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-020-63956-y

The internal cranial anatomy of Champsosaurus (Choristodera: Champsosauridae): Implications for neurosensory function
Cited by: 9
Author(s): Thomas W. Dudgeon, Hillary C. Maddin, David C. Evans, Jordan C. Mallon
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-43169-8

Zooarchaeology of the social and economic upheavals in the Late Antique-Early Islamic sequence of the Negev Desert
Cited by: 23
Author(s): Nimrod Marom, Meirav Meiri, Yotam Tepper, Tali Erickson-Gini, Hagar Reshef, Lior Weissbrod, Guy Bar-Oz
Software Mentions: 4
Published: over 7 years ago

10.3389/fonc.2020.571655

Identification and Validation of a Novel Six-Gene Prognostic Signature of Stem Cell Characteristic in Colon Cancer
Cited by: 17
Author(s): Liang Yue, Shijie Qi, Xin Wu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0110289

SlideToolkit: An Assistive Toolset for the Histological Quantification of Whole Slide Images
Cited by: 23
Author(s): Bastiaan G. L. Nelissen, Joost A. van Herwaarden, Frans L. Moll, Paul J. van Diest, Gérard Pasterkamp
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0206190

Factors in hybridization of local medical systems: Simultaneous use of medicinal plants and modern medicine in Northeast Brazil
Cited by: 10
Author(s): Aguinaldo José do Nascimento, Patrícia Muniz de Medeiros, Ulysses Paulino Albuquerque
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.00861

Sample Processing Methods Impacts on Rumen Microbiome
Cited by: 10
Author(s): Gonzalo Martínez Fernández, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2018.03183

Iron Regulation in Clostridioides difficile
Cited by: 42
Author(s): Mareike Berges, Annika-Marisa Michel, Christian Lassek, Aaron M. Nuss, Michael Beckstette, Petra Dersch, Katharina Riedel, Susanne Sievers, Dörte Becher, Andreas Otto, Sandra Maaß, Manfred Rohde, Denitsa Eckweiler, José Manuel Borrero‐de Acuña, Martina Jahn, Meina Neumann‐Schaal, Dieter Jahn
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2016.02125

Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System
Cited by: 36
Author(s): Aaron A. Best, Amanda Porter, Susan M. Fraley, Gregory S. Fraley
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pmed.1002309

Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: An exploratory multi-omic analysis
Cited by: 231
Author(s): Alexandra Snyder, Tavi Nathanson, Samuel A. Funt, Arun Ahuja, Jacqueline L. Buros, Matthew D. Hellmann, Eliza Chang, Bülent Arman Aksoy, Hikmat Al‐Ahmadie, Erik Yusko, Marissa Vignali, Sharon Benzeno, Mariel Elena Boyd, Meredith Maisie Moran, Gopa Iyer, Harlan Robins, Elaine R. Mardis, Taha Merghoub, Jeff Hammerbacher, Jonathan E. Rosenberg, Dean F. Bajorin
Software Mentions: 4
Published: about 9 years ago

10.1038/s12276-021-00583-1

High prevalence of TP53 loss and whole-genome doubling in early-onset colorectal cancer
Cited by: 11
Author(s): Jeong Eun Kim, Jaeyong Choi, Chang Ohk Sung, Yong Sang Hong, Sun Young Kim, Hyunjung Lee, Tae Won Kim, Jong‐Il Kim
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giab036

MesKit: a tool kit for dissecting cancer evolution of multi-region tumor biopsies through somatic alterations
Cited by: 10
Author(s): Mengni Liu, Jianyu Chen, Xin Wang, Chengwei Wang, Xiaolong Zhang, Yubin Xie, Zhixiang Zuo, Qi Zhao
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-40883-1

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Cited by: 13
Author(s): Jonna Teikari, Rafael Vicentini Popin, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 4
Published: over 7 years ago

10.1186/s40425-019-0609-x

Paired whole exome and transcriptome analyses for the Immunogenomic changes during concurrent chemoradiotherapy in esophageal squamous cell carcinoma
Cited by: 22
Author(s): Sehhoon Park, Je‐Gun Joung, Min Ye, Jae‐Yong Nam, Daeun Ryu, Dongryul Oh, Woong-Yang Park, Sehoon Lee, Yoon La Choi, Jin Seok Ahn, Myung‐Ju Ahn, Keunchil Park, Jong‐Mu Sun
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-97516-9

Phytoplankton communities in temporary ponds under different climate scenarios
Cited by: 6
Author(s): Sofia Celewicz-Gołdyn, Bartłomiej Gołdyn
Software Mentions: 4
Published: almost 5 years ago

10.1007/s10817-016-9366-4

On Definitions of Constants and Types in HOL
Cited by: 7
Author(s): Rob Arthan
Software Mentions: 4
Published: over 10 years ago