10.1038/s41598-019-53966-w

Alteration of the aggregation and spatial organization of the vector of Chagas disease, Triatoma infestans, by the parasite Trypanosoma cruzi
Cited by: 8
Author(s): Stéphanie Depickère, Gonzalo Marcelo Ramírez-Ávila, Jean‐Louis Deneubourg
Software Mentions: 4
Published: over 6 years ago

10.1128/mSystems.00960-20

Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
Cited by: 3
Author(s): Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2018.01605

Effects of Short- and Long-Term Variation in Resource Conditions on Soil Fungal Communities and Plant Responses to Soil Biota
Cited by: 10
Author(s): Philip G. Hahn, Lorinda Bullington, Beau Larkin, Kelly LaFlamme, John L. Maron, Ylva Lekberg
Software Mentions: 4
Published: almost 8 years ago

10.3389/fpsyg.2021.621372

Touchscreens for Whom? Working Memory and Age Moderate the Impact of Contingency on Toddlers' Transfer From Video
Cited by: 6
Author(s): Koeun Choi, Heather L. Kirkorian, Tiffany A. Pempek
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giy081

SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution
Cited by: 14
Author(s): Xia Li, Dongmei Ai, Hojoon Lee, Noemi Andor, Chao Li, Nancy R. Zhang, Hanlee P. Ji
Software Mentions: 4
Published: about 8 years ago

10.1016/j.wroa.2020.100056

Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households
Cited by: 5
Author(s): Erica R. Fuhrmeister, Ayşe Ercümen, Jessica A. Grembi, Mahfuza Islam, Amy J. Pickering, Kara L. Nelson
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-01661-w

Bisulfite-free epigenomics and genomics of single cells through methylation-sensitive restriction
Cited by: 16
Author(s): Christoph Niemöller, Julius Wehrle, Julian Riba, Rainer Claus, Nathalie Renz, Janika Rhein, Sabine Bleul, Juliane M. Stosch, Justus Duyster, Christoph Plass, Pavlo Lutsik, Daniel B. Lipka, Michael Lübbert, Heiko Becker
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0255472

Predictors for one-year outcomes of cardiorespiratory fitness and cardiovascular risk factor control after cardiac rehabilitation in elderly patients: The EU-CaRE study
Cited by: 2
Author(s): Prisca Eser, Thimo Marcin, Eva Prescott, Leonie F Prins, Evelien Kolkman, Wendy Bruins, Astrid E van der Velde, Carlos Peña-Gil, Marie‐Christine Iliou, Diego Ardissino, Uwe Zeymer, Esther P. Meindersma, Arnoud. W. J. Van’tHof, Ed P de Kluiver, Matthias Wilhelm
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-46930-1

Distinct epigenetic profiles in children with perinatally-acquired HIV on antiretroviral therapy
Cited by: 17
Author(s): Stephanie Shiau, Renate Strehlau, Shuang Wang, Avy Violari, Catherine Do, Faeezah Patel, Afaaf Liberty, Izabela Krupska, Stephen M. Arpadi, Marc Foca, Ashraf Coovadia, Elaine J. Abrams, Benjamin Tycko, Mary Beth Terry, Louise Kuhn
Software Mentions: 4
Published: about 7 years ago

10.3389/fpsyt.2021.625247

Predicting Symptoms of Depression and Anxiety Using Smartphone and Wearable Data
Cited by: 88
Author(s): Isaac Moshe, Yannik Terhorst, Kennedy Opoku Asare, Lasse Sander, Denzil Ferreira, Harald Baumeister, David C. Mohr, Laura Pulkki-Råbäck
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-58779-w

A Group of Olfactory Receptor Alleles that Encode Full Length Proteins are Down-Regulated as Olfactory Sensory Neurons Mature
Cited by: 1
Author(s): Richard C. Krolewski, Brian M. Lin, Samuel D. Stampfer, Adam Packard, James E. Schwob
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms9030561

New Insights into Microbial Diversity of the Traditional Packed Table Olives Aloreña de Málaga through Metataxonomic Analysis
Cited by: 10
Author(s): Elio López-García, Antonio Benítez-Cabello, Javier Ramiro-García, Verónica Romero‐Gil, Francisco Rodríguez‐Gómez, Francisco Noé Arroyo‐López
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0232248

Caribou in the cross-fire? Considering terrestrial lichen forage in the face of mountain pine beetle (Dendroctonus ponderosae) expansion
Cited by: 4
Author(s): Barry R. Nobert, Terrence A. Larsen, Karine E. Pigeon, Laura Finnegan
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-61288-5

Forecasting risk gene discovery in autism with machine learning and genome-scale data
Cited by: 21
Author(s): Leo Brueggeman, Tanner Koomar, Jacob J. Michaelson
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-019-0722-6

Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease
Cited by: 28
Author(s): Samuel S. Minot, Amy Willis
Software Mentions: 4
Published: about 7 years ago

10.1186/s40168-016-0214-x

Influence of maternal breast milk ingestion on acquisition of the intestinal microbiome in preterm infants
Cited by: 140
Author(s): Katherine E. Gregory, Buck S. Samuel, Pearl Houghteling, Shan Guru, Frederick M. Ausubel, Ruslan I. Sadreyev, W. Allan Walker
Software Mentions: 4
Published: over 9 years ago

10.12688/wellcomeopenres.16584.2

­­­­­­­A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS­­­
Cited by: 31
Author(s): Leila Reyes, Manuel A. Sanchez-Garcia, Tyler Morrison, Andy J. M. Howden, Emily R. Watts, Simone Arienti, Pranvera Sadiku, Patricia Coelho, Ananda S. Mirchandani, Ailiang Zhang, David Hope, Sarah Clark, Jo Singleton, Shonna Johnston, Robert Grecian, Azin Poon, Sarah McNamara, Ian Harper, Max Head Fourman, Alejandro Brenes, Shalini Pathak, Adam Lloyd, Giovanny Rodriguez Blanco, Alex von Kriegsheim, Bart Ghesquière, Wesley Vermaelen, Camila Takeno Cologna, Kevin Dhaliwal, Nik Hirani, David H. Dockrell, Moira K. B. Whyte, David Griffith, Doreen A. Cantrell, Sarah R. Walmsley
Software Mentions: 4
Published: about 5 years ago

10.1111/1365-2435.13354

Immune state is associated with natural dietary variation in wild mice<i>Mus musculus domesticus</i>
Cited by: 11
Author(s): Christopher H. Taylor, Stuart Young, Jonathan Fenn, Angela L. Lamb, Ann Lowe, Benoit Poulin, Andrew D. C. MacColl, Janette E. Bradley
Software Mentions: 4
Published: about 7 years ago

10.3390/jof5040095

9th Trends in Medical Mycology Held on 11–14 October 2019, Nice, France, Organized under the Auspices of EORTC-IDG and ECMM
Cited by: 14
Author(s): Jean Pierre Gangneux, Olivier Lortholary, Oliver A. Cornely, Livio Pagano
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0232437

In-field bioreactors demonstrate dynamic shifts in microbial communities in response to geochemical perturbations
Cited by: 3
Author(s): Regina L. Wilpiszeski, Caitlin M. Gionfriddo, Ann M. Wymore, Ji Won Moon, Kenneth A. Lowe, Mircea Podar, Sa’ad Rafie, Matthew W. Fields, Terry C. Hazen, Xiaoxuan Ge, Farris L. Poole, Michael W. W. Adams, Romy Chakraborty, Yuhang Fan, Joy D. Van Nostrand, Jizhong Zhou, Adam P. Arkin, Dwayne A. Elias
Software Mentions: 4
Published: almost 6 years ago

10.1093/femsec/fiz128

Biogeographical patterns in soil bacterial communities across the Arctic region
Cited by: 49
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2018.01647

Tucumã Oil Shifted Ruminal Fermentation, Reducing Methane Production and Altering the Microbiome but Decreased Substrate Digestibility Within a RUSITEC Fed a Mixed Hay – Concentrate Diet
Cited by: 29
Author(s): Aline Maria Pereira Cruz Ramos, Stephanie A. Terry, Devin B. Holman, Gerhard Breves, L. G. R. Pereira, André G. M. Silva, A. V. Chaves
Software Mentions: 4
Published: about 8 years ago

10.3389/fpsyg.2018.01266

The Understanding of Scalar Implicatures in Children With Autism Spectrum Disorder: Dichotomized Responses to Violations of Informativeness
Cited by: 23
Author(s): Walter Schaeken, Marie Van Haeren, Valentina Bambini
Software Mentions: 4
Published: about 8 years ago

10.1038/s41398-019-0448-z

Co-expression network modeling identifies key long non-coding RNA and mRNA modules in altering molecular phenotype to develop stress-induced depression in rats
Cited by: 27
Author(s): Qingzhong Wang, Bhaskar Roy, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-67743-7

Multivariate analysis reveals differentially expressed genes among distinct subtypes of diffuse astrocytic gliomas: diagnostic implications
Cited by: 10
Author(s): Nerea González‐García, Ana Belén Nieto Librero, Ana Luísa Vital, Hermínio Tão, María González-Tablas, Álvaro Otero, Purificación Galindo-Villardón, Alberto Órfão, María Dolores Tabernero
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2020.602404

Bovine Teat Cistern Microbiota Composition and Richness Are Associated With the Immune and Microbial Responses During Transition to Once-Daily Milking
Cited by: 7
Author(s): Lucie Rault, Pierre-Alexandre Lévêque, Sarah Barbey, Frédéric Launay, Hélène Larroque, Yves Le Loir, Pierre Germon, Jocelyne Guinard-Flament, Sergine Even
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0248635

Heterospecific pollination by an invasive congener threatens the native American bittersweet, Celastrus scandens
Cited by: 4
Author(s): David N. Zaya, Stacey A. Leicht‐Young, Noel B. Pavlovic, Mary V. Ashley
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0201791

Spatial patterns and predictor variables vary among different types of primary producers and consumers in eelgrass (Zostera marina) beds
Cited by: 6
Author(s): Mizuho Namba, Masahiro Nakaoka
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0257226

Comparing the reliability of relative bird abundance indices from standardized surveys and community science data at finer resolutions
Cited by: 4
Author(s): Mei-Ling E. Feng, Judy Che‐Castaldo
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-50217-w

Microbiome-Transcriptome Interactions Related to Severity of Respiratory Syncytial Virus Infection
Cited by: 28
Author(s): Abhijeet R. Sonawane, Tian Liang, Chin Yi Chu, Xing Qiu, Lu Wang, Jeanne Holden‐Wiltse, Alex Grier, Steven R. Gill, Mary T. Caserta, Ann R. Falsey, David J. Topham, Edward E. Walsh, Thomas J. Mariani, Scott T. Weiss, Edwin K. Silverman, Kimberly Glass, Yang Yu Liu
Software Mentions: 4
Published: almost 7 years ago

10.7554/eLife.70055

Tissue environment, not ontogeny, defines murine intestinal intraepithelial T lymphocytes
Cited by: 11
Author(s): Alejandro Brenes, Maud Vandereyken, Olivia J. James, Harriet Watt, Jens Hukelmann, Laura Spinelli, Dina Dikovskaya, Angus I. Lamond, Mahima Swamy
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0118113

The Impact of Predation by Marine Mammals on Patagonian Toothfish Longline Fisheries
Cited by: 27
Author(s): Marta Söffker, Phil Trathan, J. Moir Clark, Martin A. Collins, Mark Belchier, Richard Scott
Software Mentions: 4
Published: over 11 years ago

10.1186/1471-2288-13-28

Dealing with missing data in the Center for Epidemiologic Studies Depression self-report scale: a study based on the French E3N cohort
Cited by: 17
Author(s): Noémie Resseguier, Hélène Verdoux, Roch Giorgi, Françoise Clavel‐Chapelon, Xavier Paolettí
Software Mentions: 4
Published: over 13 years ago

10.1186/s40168-018-0400-0

Effects of predation stress and food ration on perch gut microbiota
Cited by: 47
Author(s): Yinghua Zha, Alexander Eiler, Frank Johansson, Richard Svanbäck
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-014-0536-6

TNFα signalling primes chromatin for NF-κB binding and induces rapid and widespread nucleosome repositioning
Cited by: 41
Author(s): Sarah D. Diermeier, Petros Kolovos, Leonhard Heizinger, Uwe Schwartz, Theodore Georgomanolis, Anne Zirkel, Gero Wedemann, Frank Grosveld, Tobias Knoch, Rainer Merkl, Peter R. Cook, Gernot Längst, Argyris Papantonis
Software Mentions: 4
Published: over 11 years ago

10.7717/peerj.5829

Ecological divergence of burying beetles into the forest canopy
Cited by: 7
Author(s): Jillian D. Wettlaufer, Kevin Burke, Adam Schizkoske, David Beresford, Paul R. Martin
Software Mentions: 4
Published: over 7 years ago

10.3389/fpsyg.2018.00192

The Mental Representation of Polysemy across Word Classes
Cited by: 6
Author(s): Anastasiya Lopukhina, Anna Laurinavichyute, Konstantin Lopukhin, Olga Dragoy
Software Mentions: 4
Published: over 8 years ago

10.3390/e22091057

Software Requirements Classification Using Machine Learning Algorithms
Cited by: 42
Author(s): Edna Dias Canedo, Bruno Cordeiro Mendes
Software Mentions: 4
Published: almost 6 years ago

10.1098/rspb.2020.2593

Darwin's vexing contrivance: a new hypothesis for why some flowers have two kinds of anther
Cited by: 10
Author(s): Kathleen M. Kay, Tania Jogesh, Diana Tataru, Sami Akiba
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms9061157

Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?
Cited by: 5
Author(s): Elsa Gadoin, Lucile Durand, Aurélie Guillou, Sandrine Crochemore, Thierry Bouvier, Emmanuelle Roque, Laurent Dagorn, Jean‐Christophe Auguet, Antoinette Adingra, Christelle Desnues, Yvan Bettarel
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers13184687

Bacteria-Derived Extracellular Vesicles in Urine as a Novel Biomarker for Gastric Cancer: Integration of Liquid Biopsy and Metagenome Analysis
Cited by: 7
Author(s): Jae Yong Park, Chil Sung Kang, Ho Chan Seo, Jin Chul Shin, Sung Min Kym, Young Soo Park, Tae Seop Shin, Jae Gyu Kim, Yoon Keun Kim
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-018-36355-7

An adaptive microbiome α-diversity-based association analysis method
Cited by: 27
Author(s): Hyunwook Koh
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.00599

Microbiota of the Gut-Lymph Node Axis: Depletion of Mucosa-Associated Segmented Filamentous Bacteria and Enrichment of Methanobrevibacter by Colistin Sulfate and Linco-Spectin in Pigs
Cited by: 11
Author(s): Benjamin Zwirzitz, Beate Pinior, Barbara U. Metzler‐Zebeli, Monika Handler, Kristina Gense, Christian Knecht, Andrea Ladinig, Monika Dzieciol, Stefanie U. Wetzels, Martin Wagner, Stephan Schmitz‐Esser, Evelyne Mann
Software Mentions: 4
Published: over 7 years ago

10.1128/mSphere.00730-19

Gut Microbiomes of the Eastern Oyster ( <i>Crassostrea virginica</i> ) and the Blue Mussel ( <i>Mytilus edulis</i> ): Temporal Variation and the Influence of Marine Aggregate-Associated Microbial Communities
Cited by: 43
Author(s): Melissa L. Pierce, J. Evan Ward
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0188408

Leaf herbivory imposes fitness costs mediated by hummingbird and insect pollinators
Cited by: 17
Author(s): Alexander Chautá, Susan R. Whitehead, Marisol Amaya–Márquez, Katja Poveda
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.7526

Habitat fragmentation and vegetation structure impact gastrointestinal parasites of small mammalian hosts in Madagascar
Cited by: 7
Author(s): Frederik Kiene, Bertrand Andriatsitohaina, Malcolm S. Ramsay, Romule Rakotondravony, Christina Strübe, Ute Radespiel
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.6049

Ecology and life history of <i>Meta bourneti</i> (Araneae: Tetragnathidae) from Monte Albo (Sardinia, Italy)
Cited by: 13
Author(s): Enrico Lunghi
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.1823

Modeling and predicting the growth of the mussel, <i>Mytilus edulis</i> : implications for planning of aquaculture and eutrophication mitigation
Cited by: 18
Author(s): Per Bergström, Susanne Lindegarth, Mats Lindegarth
Software Mentions: 4
Published: over 10 years ago

10.1098/rsos.170400

Native freshwater species get out of the way: Prussian carp (<i>Carassius gibelio</i>) impacts both fish and benthic invertebrate communities in North America
Cited by: 20
Author(s): Jonathan L. W. Ruppert, Cassandra Docherty, Kenton Neufeld, Kyle Hamilton, Laura MacPherson, Mark S. Poesch
Software Mentions: 4
Published: almost 9 years ago

10.3390/microorganisms9040822

Rootstocks Shape Their Microbiome—Bacterial Communities in the Rhizosphere of Different Grapevine Rootstocks
Cited by: 16
Author(s): Leonie Dries, Simone Bussotti, Carlo Pozzi, Robert Kunz, Sylvia Schnell, Otmar Löhnertz, Anne Vortkamp
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.02878

Bacterial Diversity Associated With the Rhizosphere and Endosphere of Two Halophytes: Glaux maritima and Salicornia europaea
Cited by: 51
Author(s): Kosuke Yamamoto, Yuh Shiwa, Taichiro Ishige, Hikaru Sakamoto, Keisuke Tanaka, Makoto Uchino, Naoto Tanaka, Suguru Oguri, Hiromasa Saitoh, Seiya Tsushima
Software Mentions: 4
Published: over 7 years ago

10.3390/cancers12040963

Analysis of the Circadian Regulation of Cancer Hallmarks by a Cross-Platform Study of Colorectal Cancer Time-Series Data Reveals an Association with Genes Involved in Huntington’s Disease
Cited by: 14
Author(s): Müge Yalçin, Rukeia El-Athman, Koliane Ouk, Josef Priller, Angela Relógio
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1008466

Paralog buffering contributes to the variable essentiality of genes in cancer cell lines
Cited by: 59
Author(s): Barbara De Kegel, Colm J. Ryan
Software Mentions: 4
Published: almost 7 years ago

10.1093/cid/ciz906

Gut Microbiota Features Associated With Campylobacter Burden and Postnatal Linear Growth Deficits in a Peruvian Birth Cohort
Cited by: 19
Author(s): Saba Rouhani, Nicholas W. Griffin, Pablo Peñataro Yori, Maribel Paredes Olórtegui, Mery Siguas Salas, Dixner Rengifo Trigoso, Lawrence H. Moulton, Eric R. Houpt, Michael J. Barratt, Margaret Kosek, Jeffrey I. Gordon
Software Mentions: 4
Published: almost 7 years ago

10.3390/microorganisms9061121

Long-Term Effects of Dietary Supplementation with Olive Oil and Hydrogenated Vegetable Oil on the Rumen Microbiome of Dairy Cows
Cited by: 7
Author(s): Nathaly Cancino‐Padilla, Natalia Catalán, Karen Siu-Ting, Christopher J. Creevey, Sharon Huws, Jaime Romero, Einar Vargas‐Bello‐Pérez
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.1625

Individual variation in parental workload and breeding productivity in female European starlings: is the effort worth it?
Cited by: 17
Author(s): Melinda A. Fowler, Tony Williams
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-020-74798-z

Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
Cited by: 19
Author(s): Nathalie Acevedo, Rui Benfeitas, Shintaro Katayama, Sören Bruhn, Ann‐Catrin Andersson, Gustav Wikberg, Lena Lundeberg, Jessica M. Lindvall, Dario Greco, Juha Kere, Cilla Söderhäll, Annika Scheynius
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0238034

An evaluation of bird and bat mortality at wind turbines in the Northeastern United States
Cited by: 12
Author(s): Daniel Choi, Thomas Wittig, Bryan M. Kluever
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-52433-w

Phonological network fluency identifies phonological restructuring through mental search
Cited by: 5
Author(s): Karl David Neergaard, Jin Luo, Chu‐Ren Huang
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0236728

The prevalence of psychiatric symptoms before the diagnosis of Parkinson’s disease in a nationwide cohort: A comparison to patients with cerebral infarction
Cited by: 9
Author(s): Szabolcs Szatmári, András Ajtay, Ferenc Oberfrank, Balázs Dobi, Dániel Bereczki
Software Mentions: 4
Published: about 6 years ago

10.1128/mSphere.00936-20

Randomized Controlled Trial of Oral Vancomycin Treatment in Clostridioides difficile-Colonized Patients
Cited by: 18
Author(s): Skye Fishbein, Tiffany Hink, Kimberly A. Reske, Candice Cass, Emily Struttmann, Zainab Hassan Iqbal, Sondra Seiler, Jennie H. Kwon, Carey‐Ann D. Burnham, Gautam Dantas, Erik R. Dubberke
Software Mentions: 4
Published: over 5 years ago

10.1186/gb-2014-15-2-r21

Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans
Cited by: 46
Author(s): Cristina González-Aguilera, Kohta Ikegami, Cristina de la Cruz Ayuso, Alberto de Luis, María Íñiguez, Juan Cabello, Jason D. Lieb, Peter Askjaer
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-017-02854-2

Environmentally driven sexual segregation in a marine top predator
Cited by: 37
Author(s): Vítor H. Paiva, Justin Pereira, Filipe R. Ceia, Jaime A. Ramos
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0252223

Global antibiotic dosing strategies in hospitalised children: Characterising variation and implications for harmonisation of international guidelines
Cited by: 1
Author(s): Michelle N. Clements, Neal Russell, Julia Bielicki, Sally Ellis, Silke Gastine, Yingfen Hsia, Joseph F. Standing, A. Sarah Walker, Mike Sharland
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.11266

The role of orthographic neighbourhood effects in lateralized lexical decision: a replication study and meta-analysis
Cited by: 2
Author(s): Adam J Parker, Ciara Egan, James A. Grant, Sophie Harte, Brad T. Hudson, Zoe Woodhead
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-021-01071-4

A synthetic probiotic engineered for colorectal cancer therapy modulates gut microbiota
Cited by: 60
Author(s): Yusook Chung, Yongku Ryu, Byung Chull An, Yeo-Sang Yoon, Oksik Choi, Tai Yeub Kim, Jae Kyung Yoon, Jun Young Ahn, Ho Jin Park, Soon-Kyeong Kwon, Jihyun F. Kim, Myung Jun Chung
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.02558

Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments
Cited by: 14
Author(s): Claus Pelikan, Marion Jaussi, Kenneth Wasmund, Marit‐Solveig Seidenkrantz, Christof Pearce, Zou Zou A. Kuzyk, Craig W. Herbold, Hans Røy, Kasper Urup Kjeldsen, Alexander Loy
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-017-17970-2

Bee pollination increases yield quantity and quality of cash crops in Burkina Faso, West Africa
Cited by: 85
Author(s): Katharina Stein, Daouda Coulibaly, Kathrin Stenchly, Dethardt Goetze, Stefan Porembski, André Lindner, Souleymane Konaté, Eduard K. Linsenmair
Software Mentions: 4
Published: over 8 years ago

10.3389/fpsyg.2015.01863

Explicit Instructions Increase Cognitive Costs of Deception in Predictable Social Context
Cited by: 4
Author(s): Marcel Falkiewicz, Justyna Sarzyńska, Justyna Babula, Iwona Szatkowska, Anna Grabowska, Edward Nęcka
Software Mentions: 4
Published: over 10 years ago

10.3389/fpsyg.2019.01594

Acoustic Correlates of Auditory Object and Event Perception: Speakers, Musical Timbres, and Environmental Sounds
Cited by: 5
Author(s): Mattson Ogg, L. Robert Slevc
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-019-53471-0

Feature selection with the Fisher score followed by the Maximal Clique Centrality algorithm can accurately identify the hub genes of hepatocellular carcinoma
Cited by: 31
Author(s): Chengzhang Li, Jiucheng Xu
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2016.00337

Predicting Reading and Spelling Disorders: A 4-Year Prospective Cohort Study
Cited by: 15
Author(s): Lucia Bigozzi, Christian Tarchi, Corrado Caudek, Giuliana Pinto
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-86207-0

Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease
Cited by: 17
Author(s): Peng-Fei Zheng, Lu-Zhu Chen, Yao-Zong Guan, Peng Liu
Software Mentions: 4
Published: over 5 years ago

10.1186/1752-0509-6-147

The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes
Cited by: 16
Author(s): Sebastian Vlaic, Wolfgang Schmidt‐Heck, Madlen Matz‐Soja, E Marbach, Jörg Linde, Anke Meyer‐Baese, Sebastian Zellmer, Reinhard Guthke, Rolf Gebhardt
Software Mentions: 4
Published: over 14 years ago

10.1038/s41598-019-49446-w

De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Cited by: 19
Author(s): Nisha Dhiman, Nitesh Kumar Sharma, Pooja Thapa, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar, Amita Bhattacharya
Software Mentions: 4
Published: almost 7 years ago

10.3390/vaccines9060617

Global Vaccine Hesitancy Segmentation: A Cross-European Approach
Cited by: 10
Author(s): Almudena Recio-Román, Manuel Recio-Menéndez, María Victoria Román-González
Software Mentions: 4
Published: about 5 years ago

10.2196/15394

Applying Machine Learning Models with An Ensemble Approach for Accurate Real-Time Influenza Forecasting in Taiwan: Development and Validation Study
Cited by: 18
Author(s): Hao-Yuan Cheng, Yu-Chun Wu, Min-Hau Lin, Yu-Lun Liu, Yue-Yang Tsai, Jo-Hua Wu, Ke-Han Pan, Chih-Jung Ke, Chiu-Mei Chen, Liu Ding-ping, I‐Feng Lin, Jen-Hsiang Chuang
Software Mentions: 4
Published: about 6 years ago

10.1038/s42003-020-01597-7

Causal evidence for the adaptive benefits of social foraging in the wild
Cited by: 9
Author(s): Lysanne Snijders, Stefan Krause, Alan Novaes Tump, Michael Breuker, Chente Ortiz, Sofia Rizzi, Indar W. Ramnarine, Jens Krause, Ralf H. J. M. Kurvers
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-018-1142-0

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits
Cited by: 151
Author(s): Ehsan Kayal, Bastian Bentlage, M. Sabrina Pankey, Aki Ohdera, Mónica Medina, David C. Plachetzki, Allen G. Collins, Joseph F. Ryan
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pmed.1002691

Machine learning to identify pairwise interactions between specific IgE antibodies and their association with asthma: A cross-sectional analysis within a population-based birth cohort
Cited by: 51
Author(s): Sara Fontanella, Clément Frainay, Clare Murray, Angela Simpson, Adnan Čustović
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0163476

An Exploration of Human Well-Being Bundles as Identifiers of Ecosystem Service Use Patterns
Cited by: 26
Author(s): Maike Hamann, Reinette Biggs, Belinda Reyers
Software Mentions: 4
Published: almost 10 years ago

10.3389/fcell.2020.562662

Identifying Mechanisms of Normal Cognitive Aging Using a Novel Mouse Genetic Reference Panel
Cited by: 6
Author(s): Amy R. Dunn, Niran Hadad, Sarah M. Neuner, Jigang Zhang, Vivek Philip, Logan Dumitrescu, Timothy J. Hohman, Jeremy H. Herskowitz, Kathryn A O’Connell, Catherine C. Kaczorowski
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0151697

Comparative RNA-Seq Analysis Reveals That Regulatory Network of Maize Root Development Controls the Expression of Genes in Response to N Stress
Cited by: 19
Author(s): Xiujing He, Hui Ma, Xing Zhao, Shujun Nie, Yuhua Li, Zhiming Zhang, Yaou Shen, Qi Chen, Yanli Lu, Hai Long, Shufeng Zhou, Shibin Gao, Guangtang Pan, Hung-Ching Lin
Software Mentions: 4
Published: over 10 years ago

10.7717/peerj.9812

Using bioinformatics and metabolomics to identify altered granulosa cells in patients with diminished ovarian reserve
Cited by: 6
Author(s): Ruifen He, Zhongying Zhao, Yongxiu Yang, Xiaolei Liang
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-020-03711-2

VFFVA: dynamic load balancing enables large-scale flux variability analysis
Cited by: 6
Author(s): Marouen Ben Guebila
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41398-019-0548-9

Epigenome-wide association study of depression symptomatology in elderly monozygotic twins
Cited by: 44
Author(s): Anna Starnawska, Qihua Tan, Mette Soerensen, Matt McGue, Ole Mors, Anders D. Børglum, Kaare Christensen, Mette Nyegaard, Lene Christiansen
Software Mentions: 4
Published: almost 7 years ago

10.1186/1756-0381-6-17

Using random walks to identify cancer-associated modules in expression data
Cited by: 32
Author(s): Deanna Petrochilos, Ali Shojaie, John H. Gennari, Neil F. Abernethy
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0084212

Genome Wide Expression Profiling during Spinal Cord Regeneration Identifies Comprehensive Cellular Responses in Zebrafish
Cited by: 74
Author(s): Subhra Prakash Hui, Dhriti Sengupta, Serene Gek Ping Lee, Triparna Sen, Sudip Kundu, Sinnakaruppan Mathavan, Sukla Ghosh
Software Mentions: 4
Published: over 12 years ago

10.1002/ece3.660

Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case study
Cited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: about 13 years ago

10.1186/s12879-017-2837-3

Acquisition and persistence of strain-specific methicillin-resistant Staphylococcus aureus and their determinants in community nursing homes
Cited by: 3
Author(s): Nataliya G. Batina, Christopher Crnich, Dorte Döpfer
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2019.00979

Wood Decay Characteristics and Interspecific Interactions Control Bacterial Community Succession in Populus grandidentata (Bigtooth Aspen)
Cited by: 6
Author(s): Eiko E. Kuramae, Márcio Fernandes Alves Leite, Afnan Khalil Ahmad Suleiman, Christopher M. Gough, Buck T. Castillo, Lewis Faller, Rima B. Franklin, John Syring
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.2398

Patchiness of forest landscape can predict species distribution better than abundance: the case of a forest-dwelling passerine, the short-toed treecreeper, in central Italy
Cited by: 12
Author(s): Marco Basile, Francesco Valerio, Rosario Balestrieri, Mario Posillico, Rodolfo Bucci, Tiziana Altea, Bruno De Cinti, Giorgio Matteucci
Software Mentions: 4
Published: almost 10 years ago

10.1038/srep29832

Identification of host transcriptional networks showing concentration-dependent regulation by HPV16 E6 and E7 proteins in basal cervical squamous epithelial cells
Cited by: 7
Author(s): Stephen Smith, Cinzia G. Scarpini, Ian J. Groves, Richard Odle, Nicholas Coleman
Software Mentions: 4
Published: about 10 years ago

10.1097/CCM.0000000000004747

Improving Survival of Critical Care Patients With Coronavirus Disease 2019 in England: A National Cohort Study, March to June 2020*
Cited by: 155
Author(s): John Dennis, Andrew McGovern, Sebastian J. Vollmer, Bilal A. Mateen
Software Mentions: 4
Published: almost 6 years ago

10.3389/fped.2020.00152

Pediatric Surgical Research Output in Germany in the Last 30 Years – An Assessment and International Comparison of Three Dedicated Paediatric Surgical Journals
Cited by: 4
Author(s): Christina Oetzmann von Sochaczewski, Oliver J. Muensterer
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.741608

Identification of Key Regulators of Hepatitis C Virus-Induced Hepatocellular Carcinoma by Integrating Whole-Genome and Transcriptome Sequencing Data
Cited by: 7
Author(s): L. Chen, Wei Zhang, Yiran Ben
Software Mentions: 4
Published: almost 5 years ago

10.1007/s10661-019-8042-7

Surveying the arable plant diversity of conventionally managed farmland: a comparison of methods
Cited by: 3
Author(s): Alexander Wietzke, Christoph Leuschner
Software Mentions: 4
Published: over 6 years ago

10.3389/fnmol.2021.672614

Bisulfite Amplicon Sequencing Can Detect Glia and Neuron Cell-Free DNA in Blood Plasma
Cited by: 11
Author(s): Zac Chatterton, Natalia Mendelev, Sean Chen, Walter Carr, Gary H. Kamimori, Yongchao Ge, Andrew J. Dwork, Fatemeh Haghighi
Software Mentions: 4
Published: about 5 years ago

10.1021/acs.jproteome.0c00992

Human Bone Proteomes before and after Decomposition: Investigating the Effects of Biological Variation and Taphonomic Alteration on Bone Protein Profiles and the Implications for Forensic Proteomics
Cited by: 21
Author(s): Hayley L. Mickleburgh, Ed C. Schwalbe, Andrea Bonicelli, Haruka Mizukami, Federica Sellitto, Sefora Starace, Daniel J. Wescott, David Carter, Noemi Procopio
Software Mentions: 4
Published: over 5 years ago

10.3390/plants10040810

LED and HPS Supplementary Light Differentially Affect Gas Exchange in Tomato Leaves
Cited by: 9
Author(s): Onofrio Davide Palmitessa, Aina E. Prinzenberg, Elias Kaiser, E. Heuvelink
Software Mentions: 4
Published: over 5 years ago