10.1038/s41598-021-86504-8

Identification and external validation of a prognostic signature associated with DNA repair genes in gastric cancer
Cited by: 5
Author(s): Shimin Chen, Wenbo Liu, Haojun Yu
Software Mentions: 4
Published: over 5 years ago

10.1155/2020/8162524

High-Throughput Sequencing and Exploration of the lncRNA-circRNA-miRNA-mRNA Network in Type 2 Diabetes Mellitus
Cited by: 39
Author(s): Fang Yang, Chen Yang, Zhiqiang Xue, Yaogai Lv, Ли Шен, Kexin Li, Pingping Zheng, Pan Pan, Tianyu Feng, Lina Jin, Yan Yao
Software Mentions: 4
Published: about 6 years ago

10.1186/s13073-016-0355-3

Integrative network analysis of nineteen brain regions identifies molecular signatures and networks underlying selective regional vulnerability to Alzheimer’s disease
Cited by: 191
Author(s): Minghui Wang, Panos Roussos, Andrew McKenzie, Xianxiao Zhou, Yuji Kajiwara, Kristen J. Brennand, Gabriele C. DeLuca, John F. Crary, Patrizia Casaccia, Joseph D. Buxbaum, Michelle E. Ehrlich, Sam Gandy, Alison M. Goate, Pavel Katsel, Eric E. Schadt, Vahram Haroutunian, Bin Zhang
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pbio.1002146

The Structure of an NDR/LATS Kinase–Mob Complex Reveals a Novel Kinase–Coactivator System and Substrate Docking Mechanism
Cited by: 45
Author(s): Gergő Gógl, Kyle D. Schneider, Brian J. Yeh, Alam Nashida, Alex N Nguyen Ba, Alan M. Moses, Csaba Hetényi, Attila Reményi, Eric L. Weiss
Software Mentions: 4
Published: over 11 years ago

10.7554/eLife.53237

Rapid sex-specific adaptation to high temperature in Drosophila
Cited by: 20
Author(s): Sheng‐Kai Hsu, Ana Marija Jakšić, Viola Nolte, Manolis Lirakis, Robert Kofler, Neda Barghi, Elisabetta Versace, Christian Schlötterer
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-45237-5

A sensitive and simple targeted proteomics approach to quantify transcription factor and membrane proteins of the unfolded protein response pathway in glioblastoma cells
Cited by: 23
Author(s): Chi Nguyen, Sebastian Malchow, Stefan Reich, Sascha Steltgens, Konstantin V. Shuvaev, Stefan Loroch, Christin Lorenz, Albert Sickmann, Christiane B. Knobbe-Thomsen, Björn Tews, Jan Medenbach, Robert Ahrends
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2021.667013

The Cowpea Kinome: Genomic and Transcriptomic Analysis Under Biotic and Abiotic Stresses
Cited by: 11
Author(s): José Ribamar Costa Ferreira‐Neto, Artemisa Nazaré da Costa Borges, Manassés Daniel da Silva, David Anderson de Lima Morais, João Pacífico Bezerra-Neto, Guillaume Bourque, Éderson Akio Kido, Ana Maria Benko‐Iseppon
Software Mentions: 4
Published: about 5 years ago

10.15252/msb.20209526

Multi‐modal meta‐analysis of cancer cell line omics profiles identifies ECHDC1 as a novel breast tumor suppressor
Cited by: 6
Author(s): Alok Jaiswal, Prson Gautam, Elina Pietilä, Sanna Timonen, Nora Nordström, Yevhen Akimov, Nina Sipari, Ziaurrehman Tanoli, Thomas Fleischer, Kaisa Lehti, Krister Wennerberg, Tero Aittokallio
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7799

Disentangling biotic and abiotic drivers of intraspecific trait variation in woody plant seedlings at forest edges
Cited by: 3
Author(s): Shilu Zheng, Bruce L. Webber, Raphaël K. Didham, Chun Chen, Mingjian Yu
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-44547-y

Disrupted Maturation of the Microbiota and Metabolome among Extremely Preterm Infants with Postnatal Growth Failure
Cited by: 57
Author(s): Noelle Younge, Christopher B. Newgard, C. Michael Cotten, Ronald N. Goldberg, Michael J. Muehlbauer, James R. Bain, Robert Stevens, Thomas M. O’Connell, John F. Rawls, Patrick C. Seed, Patricia L. Ashley
Software Mentions: 4
Published: about 7 years ago

10.3390/genes11091097

Differential Gene Expression with an Emphasis on Floral Organ Size Differences in Natural and Synthetic Polyploids of Nicotiana tabacum (Solanaceae)
Cited by: 11
Author(s): Jacob B. Landis, Amelda Kurti, Amber J. Lawhorn, Amy Litt, Elizabeth W. McCarthy
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-44230-2

Genetic structure and forensic characteristics of Tibeto-Burman-speaking Ü-Tsang and Kham Tibetan Highlanders revealed by 27 Y-chromosomal STRs
Cited by: 16
Author(s): Guanglin He, Zheng Wang, Yongdong Su, Xing Zou, Mengge Wang, Xu Chen, Bo Gao, Jing Liu, Shouyu Wang, Yiping Hou
Software Mentions: 4
Published: about 7 years ago

10.1186/s13059-016-1088-8

Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle–plant interface
Cited by: 214
Author(s): Duane D. McKenna, Erin D. Scully, Yannick Pauchet, Kelli Hoover, Roy Kirsch, Scott M. Geib, Robert F. Mitchell, Robert M. Waterhouse, Seung‐Joon Ahn, Deanna Arsala, Joshua B. Benoit, Heath Blackmon, Tiffany Bledsoe, Julia H. Bowsher, André Busch, Bernarda Calla, Hsu Chao, Anna K. Childers, Christopher P. Childers, Dave J. Clarke, Lorna Cohen, Jeffery P. Demuth, Huyen Dinh, Harshavardhan Doddapaneni, Amanda Dolan, Jian J. Duan, Shannon Dugan, Markus Friedrich, Karl M. Glastad, Michael A. D. Goodisman, Stéphanie Haddad, Yi Han, Daniel Hughes, Panagiotis Ioannidis, J. Spencer Johnston, Jeffery W. Jones, Leslie A. Kuhn, D. R. Lance, Chien Yueh Lee, Sandra L. Lee, Han Lin, Jeremy A. Lynch, Armin P. Moczek, Shwetha C. Murali, Donna M. Muzny, David R. Nelson, Subba Reddy Palli, Kristen A. Panfilio, Dan Pers, Monica F. Poelchau, Honghu Quan, Jiaxin Qu, Anandasankar Ray, Joseph P. Rinehart, Hugh M. Robertson, Richard L. Roehrdanz, Andrew J. Rosendale, Seunggwan Shin, Christian Silva, Alex S. Torson, Iris M. Vargas Jentzsch, John H. Werren, Kim C. Worley, George D. Yocum, Evgeny M. Zdobnov, Richard A. Gibbs, Stephen Richards
Software Mentions: 4
Published: over 9 years ago

10.1186/s13014-020-01572-w

Stability and reproducibility of 6013 deep inspiration breath-holds in left-sided breast cancer
Cited by: 24
Author(s): D. Reitz, Franziska Walter, S. Schönecker, P. Freislederer, Montserrat Pazos, Maximilian Niyazi, Guillaume Landry, Filippo Alongi, Edwin Bölke, Christiane Matuschek, M. J. Reiner, Claus Belka, Stefanie Corradini
Software Mentions: 4
Published: about 6 years ago

10.3389/fmolb.2020.581354

A Prognostic Model of 15 Immune-Related Gene Pairs Associated With Tumor Mutation Burden for Hepatocellular Carcinoma
Cited by: 28
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.57260

Construction of a ceRNA Network and a Prognostic lncRNA Signature associated with Vascular Invasion in Hepatocellular Carcinoma based on Weighted Gene Co-Expression Network Analysis
Cited by: 10
Author(s): Haisu Tao, Li Jiang, Junjie Liu, Tong Yuan, Erlei Zhang, Huifang Liang, Zhiyong Huang
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.5453

Sea surface temperature dictates movement and habitat connectivity of Atlantic cod in a coastal fjord system
Cited by: 13
Author(s): Thomas A. B. Staveley, David Jacoby, Diana Perry, Felix van der Meijs, Ingvar Lagenfelt, Mikael Cremle, Martin Gullström
Software Mentions: 4
Published: about 7 years ago

10.1093/gbe/evu073

An Expanded Genomic Representation of the Phylum Cyanobacteria
Cited by: 260
Author(s): Rochelle M. Soo, Connor T. Skennerton, Yuji Sekiguchi, Michael Imelfort, Samuel J. Paech, Paul G. Dennis, Jason A. Steen, Donovan H. Parks, Gene W. Tyson, Philip Hugenholtz
Software Mentions: 4
Published: over 12 years ago

10.1128/mSystems.00522-20

Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants
Cited by: 69
Author(s): John Leech, Raúl Cabrera‐Rubio, Aaron M. Walsh, Guerrino Macori, Calum J. Walsh, Wiley Barton, Laura Finnegan, Fiona Crispie, Órla O’Sullivan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 4
Published: over 5 years ago

10.1186/s13073-020-00787-6

Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types
Cited by: 21
Author(s): Riyue Bao, Daniel Stapor, Jason J. Luke
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-65952-8

Effects of nitrogen deposition and litter layer management on soil CO2, N2O, and CH4 emissions in a subtropical pine forestland
Cited by: 11
Author(s): Jianling Fan, Xueyong Pang, B.G. McConkey, Noura Ziadi
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-43483-1

Conserved, breed-dependent, and subline-dependent innate immune responses of Fayoumi and Leghorn chicken embryos to Newcastle disease virus infection
Cited by: 6
Author(s): Megan A. Schilling, Sahar Memari, Meredith Cavanaugh, Robab Katani, Melissa S. Deist, Jessica Radzio‐Basu, Susan J. Lamont, Joram Buza, Vivek Kapur
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giaa136

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma
Cited by: 8
Author(s): Lauren Sanders, Allison Cheney, Lucas Seninge, Anouk van den Bout, Marissa Chen, Holly C. Beale, Ellen Kephart, Jacob Pfeil, Katrina Learned, A. Geoffrey Lyle, Isabel Bjork, David Haussler, Sofie R. Salama, Olena M. Vaske
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2020.614160

An Eight-CpG-based Methylation Classifier for Preoperative Discriminating Early and Advanced-Late Stage of Colorectal Cancer
Cited by: 1
Author(s): Ji Hu, Fu-Ying Zhao, Bin Huang, Ran Jing, Meiyuan Chen, Hailin Liu, You-Song Deng, Xia Zhao, Xiaofan Han
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9122593

Induced Pluripotent Stem Cells to Understand Mucopolysaccharidosis. I: Demonstration of a Migration Defect in Neural Precursors
Cited by: 3
Author(s): Silvin Lito, Adama Sidibé, Sten Ilmjärv, Patricie Burda, Matthias R. Baumgartner, Bernhard Wehrle-Haller, Karl‐Heinz Krause, Antoine Marteyn
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228722

Iron metabolic pathways in the processes of sponge plasticity
Cited by: 8
Author(s): Alexander D. Finoshin, Kim I. Adameyko, Kirill V. Mikhailov, О. И. Кравчук, Anton Georgiev, Н. Г. Горностаев, Igor A. Kosevich, Victor S. Mikhailov, Guzel Gazizova, Elena Shagimardanova, Oleg Gusev, Yu. V. Lyupina
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.695699

Integrated Analysis of mRNA- and miRNA-Seq in the Ovary of Rare Minnow Gobiocypris rarus in Response to 17α-Methyltestosterone
Cited by: 3
Author(s): Shaozhen Liu, Qiong Yang, Yue Chen, Qing Liu, Weiwei Wang, Jing Song, Yao Zheng, Wenzhong Liu
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.01432

Innate Immune Genes Associated With Newcastle Disease Virus Load in Chick Embryos From Inbred and Outbred Lines
Cited by: 9
Author(s): Megan A. Schilling, Sahar Memari, Isabella M. Cattadori, Robab Katani, Amandus P. Muhairwa, Joram Buza, Peter J. Hudson
Software Mentions: 4
Published: about 7 years ago

10.1111/jcmm.14779

Four transcription profile–based models identify novel prognostic signatures in oesophageal cancer
Cited by: 9
Author(s): Tongyan Liu, Panqi Fang, Chencheng Han, Zhongliang Ma, Weizhang Xu, Wenjia Xia, Jingwen Hu, Yongming Xu, Lin Xu, Rong Yin, Siwei Wang, Qin Zhang
Software Mentions: 4
Published: over 6 years ago

10.3390/cells7110205

The Heterochromatin Landscape in Migrating Cells and the Importance of H3K27me3 for Associated Transcriptome Alterations
Cited by: 25
Author(s): Tamar Segal, Mali Salmon‐Divon, Gabi Gerlitz
Software Mentions: 4
Published: almost 8 years ago

10.1093/gigascience/giz052

Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection
Cited by: 8
Author(s): Toshio Ohta, Tomoya Tanjo, Osamu Ogasawara
Software Mentions: 4
Published: over 7 years ago

10.1186/s13014-018-1072-4

Real-time intra-fraction motion management in breast cancer radiotherapy: analysis of 2028 treatment sessions
Cited by: 42
Author(s): D. Reitz, Carl Ganter, S. Schönecker, Montserrat Pazos, P. Freislederer, Maximilian Niyazi, Ute Ganswindt, Filippo Alongi, M. J. Reiner, Claus Belka, Stefanie Corradini
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pcbi.1006090

DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP
Cited by: 12
Author(s): Sneha Mitra, Anushua Biswas, Leelavati Narlikar
Software Mentions: 4
Published: over 8 years ago

10.2196/jmir.6240

Impact of Predicting Health Care Utilization Via Web Search Behavior: A Data-Driven Analysis
Cited by: 33
Author(s): Vibhu Agarwal, L. Zhang, Josh Zhu, Shiyuan Fang, Tim Cheng, Chloe Hong, Nigam H. Shah
Software Mentions: 4
Published: almost 10 years ago

10.3390/ijms22041632

Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach
Cited by: 8
Author(s): Eskezeia Y. Dessie, Siang-Jyun Tu, Hui-Shan Chiang, Jeffrey J. P. Tsai, Ya‐Sian Chang, Jan-Gowth Chang, Ka-Lok Ng
Software Mentions: 4
Published: over 5 years ago

10.1186/s13227-019-0135-4

Comparative transcriptomic analysis of a wing-dimorphic stonefly reveals candidate wing loss genes
Cited by: 16
Author(s): Graham A. McCulloch, Andrew Oliphant, Peter K. Dearden, Andrew J. Veale, Charles W. Ellen, Jonathan M. Waters
Software Mentions: 4
Published: almost 7 years ago

10.3389/fpls.2021.727302

Identification of Genes and MicroRNAs Affecting Pre-harvest Sprouting in Rice (Oryza sativa L.) by Transcriptome and Small RNAome Analyses
Cited by: 4
Author(s): Minsu Park, Wookap Choi, Sang Yoon Shin, Hongman Moon, Dowhan Lee, Yun Shil Gho, Ki Hong Jung, Jong Seong Jeon, Chanseok Shin
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.ppat.1009107

Mycolactone toxin induces an inflammatory response by targeting the IL-1β pathway: Mechanistic insight into Buruli ulcer pathophysiology
Cited by: 23
Author(s): Mélanie Foulon, Marie Robbe-Saule, Jérémy Manry, Lucille Esnault, Yan Boucaud, Alexandre Alcaïs, Marine Malloci, Martine Fanton d’Andon, Tiffany Beauvais, Nathalie Labarrière, Pascale Jeannin, Laurent Abel, Jean‐Paul Saint‐André, Anne Croué, Yves Delneste, Ivo Gomperts Boneca, Laurent Marsollier, Estelle Marion
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2017.00991

Multigenerational Influences of the Fut2 Gene on the Dynamics of the Gut Microbiota in Mice
Cited by: 16
Author(s): Philipp Rausch, Sven Künzel, Abdulhadi Suwandi, Guntram A. Grassl, Philip Rosenstiel, John F. Baines
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-019-42827-1

Contrasting latitudinal patterns in phylogenetic diversity between woody and herbaceous communities
Cited by: 23
Author(s): Jhonny Capichoni Massante, Lars Götzenberger, Krista Takkis, Tiit Hallikma, Ants Kaasik, Lauri Laanisto, Michael J. Hutchings, Pille Gerhold
Software Mentions: 4
Published: over 7 years ago

10.1111/jcmm.15271

Systematic prediction of key genes for ovarian cancer by co‐expression network analysis
Cited by: 12
Author(s): Mingyuan Wang, Jinjin Wang, Jinglan Liu, Lili Zhu, Heng Ma, Jian Zou, Wei Wu, Kangkai Wang
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.01407

Predominance of Cand. Patescibacteria in Groundwater Is Caused by Their Preferential Mobilization From Soils and Flourishing Under Oligotrophic Conditions
Cited by: 143
Author(s): Martina Herrmann, Carl‐Eric Wegner, Martin Taubert, Patricia Geesink, Katharina Lehmann, Lijuan Yan, Robert Lehmann, Kai Uwe Totsche, Kirsten Küsel
Software Mentions: 4
Published: about 7 years ago

10.1093/gigascience/giz102

Metabolic responses of rice source and sink organs during recovery from combined drought and heat stress in the field
Cited by: 13
Author(s): Lovely Mae F Lawas, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Ellen Zuther, Dirk K. Hincha
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2018.00204

Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses
Cited by: 55
Author(s): Elide Formentin, Cristina Sudiro, Giorgio Perin, Samantha Riccadonna, Elisabetta Barizza, Elena Baldoni, Enrico Lavezzo, Piergiorgio Stevanato, Gian Attilio Sacchi, Paolo Fontana, Stefano Toppo, Tomas Morosinotto, Michela Zottini, Fiorella Lo Schiavo
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.12081

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
Cited by: 141
Author(s): Álvaro Martínez Barrio, Sangeet Lamichhaney, Guangyi Fan, Nima Rafati, Mats E. Pettersson, He Zhang, Jacques Dainat, Diana Ekman, Marc P. Höppner, Patric Jern, Marcel Martin, Björn Nystedt, Xin Liu, Wenbin Chen, Xinming Liang, Chengcheng Shi, Yuanyuan Fu, Kailong Ma, Xiaowei Zhan, Chungang Feng, Ulla Gustafson, Carl-Johan Rubin, Markus Sällman Almén, Martina Blass, Michèle Casini, Arild Folkvord, Linda Laikre, Nils Ryman, Simon Ming‐Yuen Lee, Xun Xu, Leif Andersson
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2020.526898

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem
Cited by: 12
Author(s): Haihua Wang, Honglong Chu, Qing Dou, Huijin Feng, Ming Tang, Shuoxin Zhang, Chunyan Wang
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.579290

Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters
Cited by: 8
Author(s): Xin Guo, Lianghuan Wu, Lingfeng Huang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1007988

Classification and phylogeny for the annotation of novel eukaryotic GNAT acetyltransferases
Cited by: 7
Author(s): Bojan Krtenic, Adrian Drazic, Thomas Arnesen, Nathalie Reuter
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0207917

Spatial variability of biogeochemistry in shallow coastal benthic communities of Potter Cove (Antarctica) and the impact of a melting glacier
Cited by: 13
Author(s): Ralf Hoffmann, Francesca Pasotti, Susana Vázquez, Nene Lefaible, Anders Torstensson, Walter P. Mac Cormack, Frank Wenzhöfer, Ulrike Braeckman
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.723350

Identification and Molecular Characterization of a Novel Hordeivirus Associated With Yellow Mosaic Disease of Privet (Ligustrum vulgare) in Europe
Cited by: 4
Author(s): Jean-Sébastien Reynard, Silvia Turco, Justine Brodard, Isabelle Kellenberger, François Maclot, Olivier Schumpp, P. Gugerli, Mikhail M. Pooggin
Software Mentions: 4
Published: almost 5 years ago

10.1186/1471-2105-6-216

JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture
Cited by: 22
Author(s): Peter Sperisen, Marco Pagni
Software Mentions: 4
Published: almost 21 years ago

10.1371/journal.pmed.1003731

Menopausal hormone therapy and women’s health: An umbrella review
Cited by: 63
Author(s): Guo Qiang Zhang, Jin Liang Chen, Ying Luo, Maya B. Mathur, Panagiotis Anagnostis, Ulugbek Nurmatov, Madar Talibov, Jing Zhang, Catherine M. Hawrylowicz, Mary Ann Lumsden, Hilary Critchley, Aziz Sheikh, Bo Lundbäck, Cecilia Lässer, Hannu Kankaanranta, Siew Hwa Lee, Bright I. Nwaru
Software Mentions: 4
Published: about 5 years ago

10.1111/febs.12929

Crystal structure of the antimicrobial peptidase lysostaphin from <i>Staphylococcus simulans</i>
Cited by: 66
Author(s): I. Sabala, Elżbieta Jagielska, Philip Bardelang, H. Czapinska, S.O. Dahms, Jason A. Sharpe, Richard James, Manuel E. Than, Neil R. Thomas, Matthias Bochtler
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0214311

ukbtools: An R package to manage and query UK Biobank data
Cited by: 33
Author(s): Ken B. Hanscombe, Jonathan R. I. Coleman, Matthew Traylor, Cathryn M. Lewis
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.16761

Origin of a folded repeat protein from an intrinsically disordered ancestor
Cited by: 40
Author(s): Hongbo Zhu, Edgardo Sepúlveda, M.D. Hartmann, Manjunatha Kogenaru, Astrid Ursinus, Eva Sulz, R. Albrecht, Murray Coles, Jörg Martin, Andrei N. Lupas
Software Mentions: 4
Published: almost 10 years ago

10.3390/jcm10173943

Targeted Temperature Management after Cardiac Arrest: A Systematic Review and Meta-Analysis with Trial Sequential Analysis
Cited by: 14
Author(s): Filippo Sanfilippo, Luigi La Via, Bruno Lanzafame, Veronica Dezio, Diana Busalacchi, Antonio Messina, Giuseppe Ristagno, Paolo Pelosi, Marinella Astuto
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpls.2017.01279

Sequence Polymorphisms and Structural Variations among Four Grapevine (Vitis vinifera L.) Cultivars Representing Sardinian Agriculture
Cited by: 23
Author(s): Luca Mercenaro, G. Nieddu, Andrea Porceddu, Mario Pezzotti, Salvatore Camiolo
Software Mentions: 4
Published: about 9 years ago

10.1038/s41416-021-01335-8

The amino acid metabolism is essential for evading physical plasma-induced tumour cell death
Cited by: 9
Author(s): Rajesh Kumar Gandhirajan, Dorothee Meyer, Sanjeev Kumar Sagwal, Klaus‐Dieter Weltmann, Thomas von Woedtke, Sander Bekeschus
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-11-598

Initial steps towards a production platform for DNA sequence analysis on the grid
Cited by: 8
Author(s): Angela C. M. Luyf, Barbera D.C. van Schaik, Michèl de Vries, Frank Baas, Antoine H. C. van Kampen, Sílvia D. Olabarriaga
Software Mentions: 4
Published: over 15 years ago

10.1371/journal.pbio.3000187

Single-cell RNA sequencing reveals regulatory mechanism for trophoblast cell-fate divergence in human peri-implantation conceptuses
Cited by: 49
Author(s): Bo Lv, Qin An, Qiao Zeng, Xunyi Zhang, Ping Lü, Yanqiu Wang, Xianmin Zhu, Yao Ji, Guoping Fan, Zhigang Xue
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-018-27650-4

MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides
Cited by: 4
Author(s): Emma Timmins‐Schiffman, Molly P. Mikan, Ying S. Ting, H. Rodger Harvey, Brook L. Nunn
Software Mentions: 4
Published: about 8 years ago

10.3390/microorganisms7100475

Low Temperature (15 °C) Reduces Bacterial Diversity and Prolongs the Preservation Time of Volvariella volvacea
Cited by: 6
Author(s): Xiuling Wang, Shunjie Liu, Mingjie Chen, Changxia Yu, Yan Zhao, Haiyan Yang, Zhe Li, Zhengpeng Li
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-69925-9

Comparative assessment of genetic diversity matrices and clustering methods in white Guinea yam (Dioscorea rotundata) based on morphological and molecular markers
Cited by: 27
Author(s): Kwabena Darkwa, Paterne A. Agre, Bunmi Olasanmi, Kazuo Iseki, Ryo Matsumoto, Adrian F. Powell, Guillaume Bauchet, David De Koeyer, Satoru Muranaka, Patrick Adebola, Robert Asiedu, Ryohei Terauchi, Asrat Asfaw
Software Mentions: 4
Published: about 6 years ago

10.1107/S1600576719005363

ClickX: a visualization-based program for preprocessing of serial crystallography data
Cited by: 4
Author(s): Xuanxuan Li, Chufeng Li, Haiguang Liu
Software Mentions: 4
Published: about 7 years ago

10.3389/fgene.2020.00225

A Comparison of Co-expression Networks in Silk Gland Reveals the Causes of Silk Yield Increase During Silkworm Domestication
Cited by: 9
Author(s): Qi Zhou, Ping Fu, Shu-Shang Li, Changjiang Zhang, Qiuhan Yu, Chuan-Zhen Qiu, Hongbo Zhang, Ze Zhang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-64570-8

Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects
Cited by: 16
Author(s): My Hanh Le, Daryi Wang
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-015-0818-3

misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads
Cited by: 11
Author(s): Xiao Zhu, Ho-fung Leung, Rongjie Wang, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang
Software Mentions: 4
Published: over 10 years ago

10.1002/1878-0261.12364

A drug‐repositioning screen for primary pancreatic ductal adenocarcinoma cells identifies 6‐thioguanine as an effective therapeutic agent for TPMT‐low cancer cells
Cited by: 15
Author(s): Inki Kim, Yong-Sung Choi, Jae Yen Song, Eun A Choi, Sojung Park, Eun Ji Lee, Je-Keun Rhee, Song Cheol Kim, Suhwan Chang
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.8544

SpeciesPrimer: a bioinformatics pipeline dedicated to the design of qPCR primers for the quantification of bacterial species
Cited by: 9
Author(s): Matthias Dreier, Hélène Berthoud, Noam Shani, Daniel Wechsler, Pilar Junier
Software Mentions: 4
Published: over 6 years ago

10.1111/febs.12975

Collapse of the native structure caused by a single amino acid exchange in human<scp>NAD</scp>(P)H:quinone oxidoreductase¹
Cited by: 53
Author(s): Wolf‐Dieter Lienhart, Venugopal Gudipati, M. Uhl, Alexandra Binter, Sergio Pulido, Robert Saf, Klaus Zangger, Karl Gruber, Peter Macheroux
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12859-021-04117-4

MAPS: machine-assisted phenotype scoring enables rapid functional assessment of genetic variants by high-content microscopy
Cited by: 3
Author(s): Jesse T. Chao, Calvin D. Roskelley, Christopher Loewen
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-021-03057-8

Comparative analysis of de novo genomes reveals dynamic intra-species divergence of NLRs in pepper
Cited by: 4
Author(s): Myung-Shin Kim, Geun Young Chae, Soohyun Oh, Jihyun Kim, Hyunggon Mang, Seungill Kim, Doil Choi
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0231037

Shift work and long work hours and their association with chronic health conditions: A systematic review of systematic reviews with meta-analyses
Cited by: 101
Author(s): Adovich S. Rivera, Maxwell O Akanbi, Linda O’Dwyer, Megan McHugh
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0199902

Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome
Cited by: 8
Author(s): Tina Ilc, Gautier Arista, Raquel Tavares, Nicolas Navrot, Éric Duchêne, Amandine Velt, Frédéric Choulet, Etienne Paux, Marc Fischer, David R. Nelson, Philippe Hugueney, Danièle Werck‐Reichhart, Camille Rustenholz
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.00170

Dual functions of TAF7L in adipocyte differentiation
Cited by: 39
Author(s): Haiying Zhou, Tommy Kaplan, Yan Li, Ivan Grubisic, Zhengjian Zhang, P. Jeremy Wang, Michael B. Eisen, Robert Tjian
Software Mentions: 4
Published: over 13 years ago

10.1097/MD.0000000000016829

The effectiveness of moxibustion for stable angina pectoris
Cited by: 0
Author(s): Yili Zhang, Yuan Li, Juan Wang, Nannan Tan, Junjie Liu, Kangjia Du, Miao Zhang, Yong Wang, Huihui Zhao, Wei Wang
Software Mentions: 4
Published: about 7 years ago

10.1111/1755-0998.13044

Rapid identification and interpretation of gene–environment associations using the new R.SamBada landscape genomics pipeline
Cited by: 15
Author(s): Solange Duruz, Natalia Sevane, Oliver Selmoni, Elia Vajana, Kevin Leempoel, Sylvie Stucki, Pablo Orozco‐terWengel, Estelle Rochat, S. Dunner, Michael William Bruford, Stéphane Joost
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.53789

Insights into herpesvirus assembly from the structure of the pUL7:pUL51 complex
Cited by: 23
Author(s): Benjamin G Butt, Danielle Owen, Cy M. Jeffries, Lyudmila Ivanova, C.P. Hill, Jennifer D. Houghton, Firoz Ahmed, Robin Antrobus, Dmitri I. Svergun, John J. Welch, Colin M. Crump, Stephen C. Graham
Software Mentions: 4
Published: over 6 years ago

10.1107/S139900471400087X

Anomalies in the refinement of isoleucine
Cited by: 3
Author(s): Karen R. M. Berntsen, Gert Vriend
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0138139

Patterns of Lynx Predation at the Interface between Protected Areas and Multi-Use Landscapes in Central Europe
Cited by: 18
Author(s): Elisa Belotti, Nicole Weder, Luděk Bufka, Arne Kaldhusdal, Helmut Küchenhoff, Heidi Seibold, Benno Woelfing, Marco Heurich
Software Mentions: 4
Published: almost 11 years ago

10.1016/j.ajhg.2015.07.007

Gain-of-Function Mutations in ZIC1 Are Associated with Coronal Craniosynostosis and Learning Disability
Cited by: 51
Author(s): Stephen R.F. Twigg, Jennifer Forecki, Jacqueline A.C. Goos, Ivy C.A. Richardson, A. Jeannette M. Hoogeboom, Ans M.W. van den Ouweland, Sigrid Swagemakers, Maarten H. Lequin, Daniel Van Antwerp, Simon J. McGowan, Isabelle Westbury, Kerry A. Miller, Steven A. Wall, Peter J. van der Spek, Irene M.J. Mathijssen, Erwin Pauws, Christa Merzdorf, Andrew O.M. Wilkie
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pgen.1007087

Comprehensive molecular profiling of 718 Multiple Myelomas reveals significant differences in mutation frequencies between African and European descent cases
Cited by: 64
Author(s): Zarko Manojlovic, Austin Christofferson, Winnie S. Liang, Jessica Aldrich, Megan Washington, Shukmei Wong, Daniel C. Rohrer, Scott D. Jewell, Rick A. Kittles, Mary DeRome, Daniel Auclair, David W. Craig, Jonathan J. Keats, John D. Carpten
Software Mentions: 4
Published: over 8 years ago

10.1038/s42003-021-02550-y

Composite trait Mendelian randomization reveals distinct metabolic and lifestyle consequences of differences in body shape
Cited by: 10
Author(s): Jonathan Sulc, Anthony Sonrel, Ninon Mounier, Chiara Auwerx, Eirini Marouli, Liza Darrous, Bogdan Draganski, Tuomas O. Kilpeläinen, Peter K. Joshi, Ruth J.F. Loos, Zoltán Kutalik
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-016-1312-2

InDel marker detection by integration of multiple softwares using machine learning techniques
Cited by: 8
Author(s): Jin Yang, Xinyi Shi, Lun Hu, Daipeng Luo, Jing Peng, Shengwu Xiong, Fankai Kong, Baohui Liu, Xiaohui Yuan
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0205668

Comprehensive evaluation of candidate reference genes for real-time quantitative PCR (RT-qPCR) data normalization in nutri-cereal finger millet [Eleusine Coracana (L.)]
Cited by: 10
Author(s): Palakolanu Sudhakar Reddy, Mahamaya G. Dhaware, D. Srinivas Reddy, Bommineni Pradeep Reddy, Kummari Divya, Kiran K. Sharma, Pooja Bhatnagar‐Mathur
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12911-019-0750-y

A visual interactive analytic tool for filtering and summarizing large health data sets coded with hierarchical terminologies (VIADS)
Cited by: 8
Author(s): Xia Jing, Matthew Emerson, David Masters, Matthew L. Brooks, Jacob Buskirk, Nasseef Abukamail, Chang Liu, James J. Cimino, Jay H. Shubrook, Sonsoles de Lacalle, Yuchun Zhou, Vimla L. Patel
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0177750

Inflammatory and apoptotic remodeling in autonomic nervous system following myocardial infarction
Cited by: 23
Author(s): Chen Gao, Kimberly Howard‐Quijano, Christoph Rau, Tatsuo Takamiya, Yang Song, Kalyanam Shivkumar, Yibin Wang, Aman Mahajan
Software Mentions: 4
Published: about 9 years ago

10.1002/ece3.5303

Parthenogenetic <i>vs</i>. sexual reproduction in oribatid mite communities
Cited by: 24
Author(s): Mark Maraun, Tancredi Caruso, Jonathan Hense, Ricarda Lehmitz, Levan Mumladze, Maka Murvanidze, Ioana Nae, Julia Schulz, Anna Seniczak, Stefan Scheu
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-59016-0

Patterns of Oral Microbiota Diversity in Adults and Children: A Crowdsourced Population Study
Cited by: 71
Author(s): Zachary M. Burcham, Nicole L. Garneau, Sarah S. Comstock, Robin M. Tucker, Rob Knight, Jessica L. Metcalf
Software Mentions: 4
Published: over 6 years ago

10.1111/tpj.14795

The genetic and functional analysis of flavor in commercial tomato: the <i>FLORAL4</i> gene underlies a QTL for floral aroma volatiles in tomato fruit
Cited by: 30
Author(s): Yury Tikunov, Raana Roohanitaziani, Fien Meijer‐Dekens, Jos Molthoff, João Paulo, Richard Finkers, Iris Capel, Fátima Carvajal Moreno, Chris Maliepaard, Mariska Nijenhuis-de Vries, C.W. Labrie, W. Verkerke, A.W. van Heusden, Fred van Eeuwijk, R.G.F. Visser, Arnaud Bovy
Software Mentions: 4
Published: about 6 years ago

10.3390/biology10090825

The Evolution of Trait Disparity during the Radiation of the Plant Genus Macrocarpaea (Gentianaceae) in the Tropical Andes
Cited by: 2
Author(s): Julien Vieu, Darina Koubínová, Jason R. Grant
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyt.2020.00839

Study Protocol: The Coaching Alternative Parenting Strategies (CAPS) Study of Parent-Child Interaction Therapy in Child Welfare Families
Cited by: 5
Author(s): Akhila Nekkanti, Rose Jeffries, Carolyn M Scholtes, Lisa Shimomaeda, Kathleen A. J. DeBow, Jessica Wells, Emma R. Lyons, Ryan J. Giuliano, Felicia J. Gutierrez, Kyndl Woodlee, Beverly W. Funderburk, Elizabeth A. Skowron
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2164-15-948

Evaluation of variant identification methods for whole genome sequencing data in dairy cattle
Cited by: 41
Author(s): C.F. Baes, Marlies Dolezal, James E. Koltes, Beat Bapst, Eric R. Fritz-Waters, Sandra Jansen, Christine Flury, Heidi Signer-Hasler, Christine Stricker, Rohan L. Fernando, R. Fries, J. Moll, Dorian J. Garrick, James M. Reecy, Birgit Gredler
Software Mentions: 4
Published: over 12 years ago

10.1107/S1600576717016600

CAPOW: a standalone program for the calculation of optimal weighting parameters for least-squares crystallographic refinements
Cited by: 0
Author(s): Natalie T. Johnson, Holger Ott, Michael R. Probert
Software Mentions: 4
Published: over 8 years ago

10.1002/2211-5463.12484

Induction of <i>ubiquitin C</i> (<i><scp>UBC</scp></i>) gene transcription is mediated by <scp>HSF</scp>1: role of proteotoxic and oxidative stress
Cited by: 22
Author(s): Marzia Bianchi, Rita Crinelli, Vanessa Arbore, Mauro Magnani
Software Mentions: 4
Published: about 8 years ago

10.1093/bioinformatics/btw417

SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena
Cited by: 35
Author(s): Yukako Tohsato, Kenneth H. L. Ho, Koji Kyoda, Shuichi Onami
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pcbi.1004728

Ensembler: Enabling High-Throughput Molecular Simulations at the Superfamily Scale
Cited by: 20
Author(s): Daniel L. Parton, Patrick Grinaway, Sonya M. Hanson, Kyle A. Beauchamp, John D. Chodera
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pcbi.1003480

GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: over 12 years ago

10.1186/s12859-019-2626-7

Partition-based optimization model for generative anatomy modeling language (POM-GAML)
Cited by: 4
Author(s): Doga Demirel, Berk Çetinsaya, Tansel Halic, Sinan Kockara, Shahryar Ahmadi
Software Mentions: 4
Published: over 7 years ago

10.3389/fimmu.2021.661357

Indoleamine 2,3-Dioxygenase 1 Inhibitor-Loaded Nanosheets Enhance CAR-T Cell Function in Esophageal Squamous Cell Carcinoma
Cited by: 11
Author(s): Jingwen Shao, Lin Hou, Jinyan Liu, Yulin Liu, Jie Ning, Qitai Zhao, Yi Zhang
Software Mentions: 4
Published: over 5 years ago