10.1186/s12891-020-03705-4

Range of abduction in patients with Legg-Calvé-Perthes disease – a nationwide register-based cohort study
Cited by: 2
Author(s): Ahmad El-Harbiti, Yasmin D. Hailer
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12983-018-0255-z

Raven food calls indicate sender’s age and sex
Cited by: 10
Author(s): Markus Boeckle, Georgine Szipl, Thomas Bugnyar
Software Mentions: 4
Published: over 8 years ago

10.1111/evo.13212

Polygamy slows down population divergence in shorebirds
Cited by: 32
Author(s): Josephine D’Urban Jackson, Natalie dos Remedios, Kathryn H. Maher, Sama Zefania, Susan M. Haig, Sara J. Oyler‐McCance, Donald Blomqvist, Terry Burke, Michael William Bruford, Tamás Székely, Clemens Küpper
Software Mentions: 4
Published: over 9 years ago

10.3389/fnins.2021.616760

Tracking Eye Movements During Sleep in Mice
Cited by: 11
Author(s): Qingshu Meng, Xinrong Tan, Chengyong Jiang, Yanyu Xiong, Biao Yan, Jiayi Zhang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0168397

Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data
Cited by: 8
Author(s): Guillaume Carissimo, Marius van den Beek, Kenneth D. Vernick, Christophe Antoniewski
Software Mentions: 4
Published: over 9 years ago

10.3389/fcimb.2017.00227

Transcriptomic Profiling of High-Density Giardia Foci Encysting in the Murine Proximal Intestine
Cited by: 32
Author(s): Jonathan K Pham, Christopher Nosala, Elaine P. Scott, Kristofer Nguyen, Kari D. Hagen, Hannah Starcevich, Scott C. Dawson
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-65916-y

Alterations of transcriptome signatures in head trauma-related neurodegenerative disorders
Cited by: 13
Author(s): Hyesun Cho, Seung Jae Hyeon, Jong-Yeon Shin, Victor E. Alvarez, Thor D. Stein, Jung‐Hee Lee, Neil W. Kowall, Ann C. McKee, Hoon Ryu, Jeong-Sun Seo
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.4970

Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam
Cited by: 22
Author(s): Ton That Huu Dat, Georg Steinert, Nguyễn Thị Kim Cúc, Hauke Smidt, Detmer Sipkema
Software Mentions: 4
Published: about 8 years ago

10.1186/s40537-021-00492-0

Text Data Augmentation for Deep Learning
Cited by: 667
Author(s): Connor Shorten, Taghi M. Khoshgoftaar, Borko Furht
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.3043

Effectiveness of removals of the invasive lionfish: how many dives are needed to deplete a reef?
Cited by: 26
Author(s): Paolo Usseglio, Jason D. Selwyn, Alan M. Downey‐Wall, J. Derek Hogan
Software Mentions: 4
Published: over 9 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-015-0590-8

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Cited by: 175
Author(s): Amelia Hubbard, Clare M. Lewis, Kentaro Yoshida, Ricardo H. Ramírez-González, C. de Vallavieille‐Pope, Jane Thomas, Sophien Kamoun, R. A. Bayles, Cristóbal Uauy, Diane G. O. Saunders
Software Mentions: 4
Published: over 11 years ago

10.1186/s13071-018-3231-8

A randomized, blinded, controlled trial to assess sand fly mortality of fluralaner administered orally in dogs
Cited by: 11
Author(s): Sonia Ares Gomez, Javier Lucientes, Juan Antonio Castillo, María Paz Peris, Sarah Delacour, Paula Andrea Serna Ortega, Ronald-Vladimir Oropeza, Albert Picado
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.5738

The relationship between social rank and spatial learning in pheasants, <i>Phasianus colchicus</i>: cause or consequence?
Cited by: 15
Author(s): Ellis J. G. Langley, Jayden O. van Horik, Mark Whiteside, Christine E. Beardsworth, Joah R. Madden
Software Mentions: 4
Published: over 7 years ago

10.1002/fes3.172

Ex‐ante evaluation of promising soybean innovations for sub‐Saharan Africa
Cited by: 5
Author(s): Sika Gbegbelegbe, Arega D. Alene, Alpha Y. Kamara, Keith Wiebe, Víctor M. Manyong, Tahirou Abdoulaye, Petros Mkandawire
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0248213

De novo identification and targeted sequencing of SSRs efficiently fingerprints Sorghum bicolor sub-population identity
Cited by: 2
Author(s): John P. Baggett, Richard L. Tillett, Elizabeth A. Cooper, Melinda K. Yerka
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1006401

Transcription Factors Encoded on Core and Accessory Chromosomes of Fusarium oxysporum Induce Expression of Effector Genes
Cited by: 52
Author(s): H. Charlotte van der Does, Like Fokkens, Ally Yang, Sarah M. Schmidt, Léon Langereis, Joanna Lukasiewicz, Timothy R. Hughes, Martijn Rep
Software Mentions: 4
Published: over 9 years ago

10.1186/s12862-021-01849-y

Multiple paths to cold tolerance: the role of environmental cues, morphological traits and the circadian clock gene vrille
Cited by: 22
Author(s): Noora Poikela, Venera Tyukmaeva, Anneli Hoikkala, Maaria Kankare
Software Mentions: 4
Published: about 5 years ago

10.1186/s12862-021-01860-3

Niche partitioning between sympatric wild canids: the case of the golden jackal (Canis aureus) and the red fox (Vulpes vulpes) in north-eastern Italy
Cited by: 7
Author(s): Elisa Torretta, Luca Riboldi, E. Costa, Claudio Delfoco, Erica Frignani, Alberto Meriggi
Software Mentions: 4
Published: about 5 years ago

10.1038/s41380-020-0767-8

AP-1 controls the p11-dependent antidepressant response
Cited by: 25
Author(s): Revathy U. Chottekalapanda, Salina Kalik, Jodi Gresack, Alyssa Ayala, Melanie Gao, Wei Wang, Sarah J. Meller, Ammar Aly, Anne Schaefer, Paul Greengard
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1005869

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Cited by: 44
Author(s): Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
Software Mentions: 4
Published: over 10 years ago

10.3390/s21041456

Web AR Solution for UAV Pilot Training and Usability Testing
Cited by: 10
Author(s): Roberto Ribeiro, João Ramos, David Safadinho, Arsénio Reis, Carlos Rabadão, João Barroso, António Pereira
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.685992

The Immune Subtypes and Landscape of Gastric Cancer and to Predict Based on the Whole-Slide Images Using Deep Learning
Cited by: 28
Author(s): Yan Chen, Zhiwei Sun, Wanlan Chen, Changyan Liu, Ruoyang Chai, Jingjing Ding, Wen Liu, Xianzhen Feng, Jun Zhou, Xiaoyi Shen, Shan Huang, Zhongqing Xu
Software Mentions: 4
Published: about 5 years ago

10.3390/cancers11050698

NECTIN4 (PVRL4) as Putative Therapeutic Target for a Specific Subtype of High Grade Serous Ovarian Cancer—An Integrative Multi-Omics Approach
Cited by: 25
Author(s): Christine Bekos, Besnik Muqaku, Sabine Dekan, Reinhard Horvat, Stephan Polterauer, Christopher Gerner, Stefanie Aust, Dietmar Pils
Software Mentions: 4
Published: about 7 years ago

10.3390/microorganisms9020294

Potential Association between Vaginal Microbiota and Cervical Carcinogenesis in Korean Women: A Cohort Study
Cited by: 23
Author(s): Gi-Ung Kang, Da-Ryung Jung, Yoon Hee Lee, Se Young Jeon, Hyung Soo Han, Gun Oh Chong, Jae‐Ho Shin
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0122339

The Active Tamoxifen Metabolite Endoxifen (4OHNDtam) Strongly Down-Regulates Cytokeratin 6 (CK6) in MCF-7 Breast Cancer Cells
Cited by: 4
Author(s): Thomas Helland, Jennifer Gjerde, Simon N. Dankel, Ingvild S. Fenne, Linn Skartveit, Andreas Drangevåg, Olivera Bozickovic, Marianne Hauglid Flågeng, Håvard Søiland, Gunnar Mellgren, Ernst A. Lien
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-021-96576-1

Dissection of the genetic basis of genotype-by-environment interactions for grain yield and main agronomic traits in Iranian bread wheat landraces and cultivars
Cited by: 9
Author(s): Hadi Alipour, Hossein Abdi, Yousef Rahimi, Mohammad Reza Bihamta
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0252686

Governance quality indicators for organ procurement policies
Cited by: 6
Author(s): David Rodríguez‐Arias, Alberto Molina Pérez, Ivar R. Hannikainen, Janet Delgado, Benjamin Söchtig, Sabine Wöhlke, Silke Schicktanz
Software Mentions: 4
Published: about 5 years ago

10.1590/1678-4685-GMB-2019-0380

HW_TEST, a program for comprehensive HARDY-WEINBERG equilibrium testing
Cited by: 8
Author(s): Fernando Azenha Bautzer Santos, Renan Barbosa Lemes, Paulo Alberto Otto
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0005791

Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites
Cited by: 65
Author(s): Kristian E. Swearingen, Scott E. Lindner, Erika L. Flannery, Ashley M. Vaughan, Robert Morrison, Rapatbhorn Patrapuvich, Cristian Koepfli, Ivan Müller, Aaron R. Jex, Robert L. Moritz, Stefan H. I. Kappe, Jetsumon Sattabongkot, Sebastian A. Mikolajczak
Software Mentions: 4
Published: about 9 years ago

10.1186/s12864-016-2695-1

Improving microRNA target prediction with gene expression profiles
Cited by: 22
Author(s): Cesaré Ovando-Vázquez, Daniel Lepe-Soltero, Cei Abreu‐Goodger
Software Mentions: 4
Published: about 10 years ago

10.1002/evl3.243

Larger cells have relatively smaller nuclei across the Tree of Life
Cited by: 11
Author(s): Martino E. Malerba, Dustin J. Marshall
Software Mentions: 4
Published: about 5 years ago

10.1186/s12880-021-00633-0

Radiomic analysis of Gd-EOB-DTPA-enhanced MRI predicts Ki-67 expression in hepatocellular carcinoma
Cited by: 19
Author(s): Yanfen Fan, Yanxia Yu, Ximing Wang, Mengjie Hu, Chunhong Hu
Software Mentions: 4
Published: about 5 years ago

10.1111/eva.12660

Impact of supplementation on deleterious mutation distribution in an exploited salmonid
Cited by: 26
Author(s): Anne‐Laure Ferchaud, Martin Laporte, Charles Perrier, Louis Bernatchez
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-020-75999-2

Loss of PHF6 leads to aberrant development of human neuron-like cells
Cited by: 2
Author(s): Anna Fliedner, Anne Gregor, Fulvia Ferrazzi, Arif B. Ekici, Heinrich Sticht, Christiane Zweier
Software Mentions: 4
Published: almost 6 years ago

10.1128/mBio.01157-20

Previremic Identification of Ebola or Marburg Virus Infection Using Integrated Host-Transcriptome and Viral Genome Detection
Cited by: 2
Author(s): Emily Speranza, Ignacio Caballero, Anna N. Honko, Joshua C. Johnson, J. Kyle Bohannon, Lisa Evans DeWald, Dawn M. Gerhardt, Jennifer Sword, Lisa E. Hensley, Richard S. Bennett, John H. Connor
Software Mentions: 4
Published: about 6 years ago

10.3389/fpls.2021.617815

Transgenerational Plasticity in Flower Color Induced by Caterpillars
Cited by: 11
Author(s): Mar Sobral, Isabelle P. Neylan, Eduardo Narbona, Rodolfo Dirzo
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.0030087

Whole-Genome Cartography of Estrogen Receptor α Binding Sites
Cited by: 414
Author(s): Chin-Yo Lin, Vinsensius B. Vega, Jane S. Thomsen, Tao Zhang, Say Li Kong, Ming Xie, King-Wah Chiu, Leonard Lipovich, Daniel H. Barnett, Fabio Stossi, A. Yeo, Joshy George, Vladimir A. Kuznetsov, Yew Kok Lee, Tze Howe Charn, Nallasivam Palanisamy, Lance D. Miller, Edwin Cheung, Benita S. Katzenellenbogen, Yijun Ruan, Guillaume Bourque, Chia Lin Wei, Edison T. Liu
Software Mentions: 4
Published: about 19 years ago

10.1371/journal.pone.0206628

Simplified, automated methods for assessing pixel intensities of fluorescently-tagged drugs in cells
Cited by: 0
Author(s): Allan Kachelmeier, Tsering Shola, William B. Meier, Anastasiya Johnson, Meiyan Jiang, Peter S. Steyger
Software Mentions: 4
Published: almost 8 years ago

10.1093/gigascience/giaa111

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
Cited by: 134
Author(s): Katrina Kalantar, Tiago Rodrigues De Carvalho, Charles F. A. de Bourcy, Boris Dimitrov, Greg Dingle, Rebecca Egger, Julie Han, Olivia B. Holmes, Yun Fang Juan, Ryan J. King, Andrey Kislyuk, Michael Lin, Maria Mariano, Todd Morse, Lucia V. Reynoso, David Rissato Cruz, Jonathan Sheu, Jennifer Tang, James Wang, Mark A. Zhang, Emily Zhong, Vida Ahyong, Sreyngim Lay, Sophana Chea, Jennifer A. Bohl, Jessica E. Manning, Cristina M. Tato, Joseph L. DeRisi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-90690-w

Comprehensive machine learning based study of the chemical space of herbicides
Cited by: 15
Author(s): Davor Oršolić, Vesna Pehar, Tomislav Šmuc, Višnja Stepanić
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-15-158

KRLMM: an adaptive genotype calling method for common and low frequency variants
Cited by: 4
Author(s): Ruijie Liu, Zhiyin Dai, Meredith Yeager, Rafael A. Irizarry, Matthew E. Ritchie
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0245103

Disease progression of 213 patients hospitalized with Covid-19 in the Czech Republic in March–October 2020: An exploratory analysis
Cited by: 1
Author(s): Martin Modrák, Paul - Christian Bürkner, Tomáš Sieger, Tomás Slisz, Martina Vašáková, Grigorij Mesežnikov, Luis Fernando Casas-Mendez, Jaromír Vajter, J Táborský, Viktor Kubricht, Daniel Suk, Jan Horejsek, M. Jedlička, Adriana Mifková, Adam Jaroš, Miroslav Kubiska, Jana Váchalová, Robin Šín, Markéta Veverková, Zbysek Pospísil, Julie Vohryzková, Rebeka Pokrievková, Kristián Hrusák, Kristína Christozova, Vianey Leos‐Barajas, Karel Fišer, Tomáš Hyánek
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.stemcr.2020.06.003

Naive Human Embryonic Stem Cells Can Give Rise to Cells with a Trophoblast-like Transcriptome and Methylome
Cited by: 118
Author(s): Jessica Cinkornpumin, Sin Young Kwon, Yixin Guo, Ishtiaque Hossain, Jacinthe Sirois, Colleen S. Russett, Hsin Wei Tseng, Hiroaki Okae, Takahiro Arima, Thomas F. Duchaîne, Wanlu Liu, William A. Pastor
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0173368

Breeding Jatropha curcas by genomic selection: A pilot assessment of the accuracy of predictive models
Cited by: 15
Author(s): Leonardo de Azevedo Peixoto, Bruno Galvêas Laviola, Alexandre Alonso Alves, Tatiana Barbosa Rosado, Leonardo Lopes Bhering
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0228374

Spatially explicit density and its determinants for Asiatic lions in the Gir forests
Cited by: 18
Author(s): Keshab Gogoi, Ujjwal Kumar, Kausik Banerjee, Y. V. Jhala
Software Mentions: 4
Published: over 6 years ago

10.3390/v13010009

Characterization of a Novel Mitovirus of the Sand Fly Lutzomyia longipalpis Using Genomic and Virus–Host Interaction Signatures
Cited by: 14
Author(s): Paula Luize Camargos Fonseca, Flávia V Ferreira, Felipe Silva, Liliane Santana Oliveira, João Trindade Marques, Aristóteles Goés-Neto, Eric Roberto Guimarães Rocha Aguiar, Arthur Gruber
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-18480-x

RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients
Cited by: 51
Author(s): Jungmok You, Susan M. Corley, Li Wen, Chris Hodge, Roland Hӧllhumer, Michele C. Madigan, Marc R. Wilkins, Gerard Sutton
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pcbi.1007731

AncesTree: An interactive immunoglobulin lineage tree visualizer
Cited by: 13
Author(s): Mathilde Foglierini, Leontios Pappas, Antonio Lanzavecchia, Davide Corti, Laurent Perez
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pgen.1008935

Horizontal transmission and recombination maintain forever young bacterial symbiont genomes
Cited by: 82
Author(s): Shelbi L. Russell, Evan Pepper-Tunick, Jesper Svedberg, Ashley Byrne, Jennie Ruelas Castillo, Christopher Vollmers, Roxanne A. Beinart, Russell Corbett-Detig
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0176176

Disturbance of a rare seabird by ship-based tourism in a marine protected area
Cited by: 10
Author(s): Timothy K. Marcella, Scott M. Gende, Daniel D. Roby, Arthur Allignol
Software Mentions: 4
Published: over 9 years ago

10.1186/s12896-015-0207-z

A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq
Cited by: 22
Author(s): Kevin Lambirth, Adam M. Whaley, Ivory C. Blakley, Jessica A. Schlueter, Kenneth L. Bost, Ann E. Loraine, Kenneth J. Piller
Software Mentions: 4
Published: almost 11 years ago

10.1186/1471-2164-15-845

Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data
Cited by: 66
Author(s): Kunshan Zhang, Kefei Huang, Yuan Luo, Siguang Li
Software Mentions: 4
Published: almost 12 years ago

10.3389/fgene.2021.670405

Construction of a Nine-MicroRNA-Based Signature to Predict the Overall Survival of Esophageal Cancer Patients
Cited by: 2
Author(s): Xiaobin Zhang, Yi He, Haiyong Gu, Zhichao Liu, Bin Li, Yang Yang, Jie Hao, Hua Ren
Software Mentions: 4
Published: about 5 years ago

10.1186/s12866-017-1092-5

Upper and lower respiratory tract microbiota in horses: bacterial communities associated with health and mild asthma (inflammatory airway disease) and effects of dexamethasone
Cited by: 43
Author(s): Stephanie L. Bond, Edouard Timsit, Matthew L. Workentine, Trevor W. Alexander, Renaud Léguillette
Software Mentions: 4
Published: almost 9 years ago

10.3390/microorganisms9050897

Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta
Cited by: 16
Author(s): Phatthanaphong Therdtatha, Yanming Song, Masaru Tanaka, Mariyatun Mariyatun, Maisaroh Almunifah, Nancy Eka Putri Manurung, Siska Indriarsih, Yi Lu, Koji Nagata, Katsuya Fukami, Tetsuo Ikeda, Yuan Kun Lee, Endang Sutriswati Rahayu, Jiro Nakayama
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-017-1037-z

Proanthocyanidin accumulation and transcriptional responses in the seed coat of cranberry beans (Phaseolus vulgaris L.) with different susceptibility to postharvest darkening
Cited by: 30
Author(s): José A. Freixas Coutin, Seth Munholland, Anjali Silva, Sanjeena Subedi, Lewis Lukens, William L. Crosby, K. Peter Pauls, Gale G. Bozzo
Software Mentions: 4
Published: about 9 years ago

10.1186/1471-2164-14-156

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti1021
Cited by: 142
Author(s): Jan-Philip Schlüter, Jan Reinkensmeier, Melanie J. Barnett, Claus Lang, Elizaveta Krol, Robert Giegerich, Sharon R. Long, Anke Becker
Software Mentions: 4
Published: over 13 years ago

10.1002/cam4.1965

Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development
Cited by: 62
Author(s): Talima Pearson, J. Gregory Caporaso, Monica Yellowhair, Nicholas A. Bokulich, Megha Padi, Denise J. Roe, Betsy C. Wertheim, Mark Linhart, Jessica A. Martinez, Cherae Bilagody, Heidie Hornstra, David S. Alberts, Peter Lance, Patricia A. Thompson
Software Mentions: 4
Published: over 7 years ago

10.1186/s12920-020-00785-y

Transcriptome analysis of peripheral whole blood identifies crucial lncRNAs implicated in childhood asthma
Cited by: 12
Author(s): Peiyan Zheng, Chen Huang, Dongliang Leng, Baoqing Sun, Xiaohua Douglas Zhang
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0216286

Reduced density and visually complex apiaries reduce parasite load and promote honey production and overwintering survival in honey bees
Cited by: 28
Author(s): Travis L. Dynes, Jennifer A. Berry, Keith S. Delaplane, Berry J. Brosi, Jacobus C. de Roode
Software Mentions: 4
Published: about 7 years ago

10.1186/s13578-018-0227-1

Characterization and potential role of microRNA in the Chinese dominant malaria mosquito Anopheles sinensis (Diptera: Culicidae) throughout four different life stages
Cited by: 9
Author(s): Xinyu Feng, Jia-Tong Wu, Shui-Sen Zhou, Jingwen Wang, Wei Hu
Software Mentions: 4
Published: over 8 years ago

10.2807/1560-7917.ES.2016.21.33.30319

The health and economic burden of bloodstream infections caused by antimicrobial-susceptible and non-susceptible Enterobacteriaceae and Staphylococcus aureus in European hospitals, 2010 and 2011: a multicentre retrospective cohort study
Cited by: 145
Author(s): Andrew J. Stewardson, Arthur Allignol, Jan Beyersmann, Nicholas Graves, Martin Schumacher, Rodolphe Meyer, Evelina Tacconelli, Giulia De Angelis, Claudio Farina, Fabio Pezzoli, Xavier Bertrand, Houssein Gbaguidi‐Haore, Jonathan D Edgeworth, Olga Tosas, José Antonio Sánchez Martínez, M Pilar Ayala-Blanco, Angelo Pan, Alessia Zoncada, Charis Marwick, Dilip Nathwani, Harald Seifert, Nina Judith Hos, Stefan Hagel, Mathias W. Pletz, Stéphan Juergen Harbarth
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12864-016-3286-x

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer
Cited by: 91
Author(s): Ann C. Gregory, Sergei A. Solonenko, J. Cesar Ignacio‐Espinoza, Kurt LaButti, Alex Copeland, Sebastian Sudek, Ashley Maitland, Lauren Chittick, Filipa Santos, Joshua S. Weitz, Alexandra Z. Worden, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-019-5910-z

Identification and differential expression analysis of anthocyanin biosynthetic genes in leaf color variants of ornamental kale
Cited by: 24
Author(s): Na Guo, Shuo Han, Ming Zong, Guixiang Wang, Shuning Zheng, Fan Liu
Software Mentions: 4
Published: about 7 years ago

10.1186/s40168-020-00835-8

Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima
Cited by: 21
Author(s): Isis Guibert, Gaël Lecellier, Gergely Torda, Xavier Pochon, Véronique Berteaux‐Lecellier
Software Mentions: 4
Published: over 6 years ago

10.3389/fcell.2021.670854

Integrative Analysis of DNA Methylation and Transcriptome Identifies a Predictive Epigenetic Signature Associated With Immune Infiltration in Gliomas
Cited by: 7
Author(s): Jianlei Zhang, Yin Jiang, Li Luo, Dongzhou Huang, Dongfeng Zhai, Ge Wang, Ning Xu, Minqiang Yang, Ying Song, Guopei Zheng, Qiong Zhang
Software Mentions: 4
Published: about 5 years ago

10.3390/jdb8010003

Matrix Metalloproteinase 13 Activity is Required for Normal and Hypoxia-Induced Precocious Hatching in Zebrafish Embryos
Cited by: 9
Author(s): Christopher D. Small, Megan el-Khoury, Ghislain Deslongchamps, Tillmann J. Benfey, Bryan D. Crawford
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-016-3306-x

Differences in the skeletal muscle transcriptome profile associated with extreme values of fatty acids content
Cited by: 40
Author(s): Aline Silva Mello Cesar, Luciana Correia de Almeida Regitano, Mirele Daiana Poleti, Sónia C. S. Andrade, P. C. Tizioto, P. S. N. Oliveira, Andrezza Maria Felício, Michele Lopes do Nascimento, Amália Saturnino Chaves, Dante Pazzanese Duarte Lanna, R. R. Túllio, R. T. Nassu, James E. Koltes, Eric R. Fritz-Waters, Gérson Barreto Mourão, Adhemar Zerlotini-Neto, James M. Reecy, Luiz Lehmann Coutinho
Software Mentions: 4
Published: over 9 years ago

10.3390/microorganisms7030072

Urbanization Altered Bacterial and Archaeal Composition in Tidal Freshwater Wetlands Near Washington DC, USA, and Buenos Aires, Argentina
Cited by: 3
Author(s): Martina Gonzalez Mateu, Cedric Evan Park, Cullen Patrick McAskill, Andrew H. Baldwin, Stephanie A. Yarwood
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2020.579072

Soil Fungal Community Composition, Not Assembly Process, Was Altered by Nitrogen Addition and Precipitation Changes at an Alpine Steppe
Cited by: 12
Author(s): Yuanming Xiao, Changbin Li, Yang Yang, Yunfeng Peng, Yuanhe Yang, Guoying Zhou
Software Mentions: 4
Published: almost 6 years ago

10.1093/database/bav047

GraP: platform for functional genomics analysis of Gossypium raimondii
Cited by: 12
Author(s): Liwei Zhang, Jinyan Guo, Qi You, Xin Yi, Yi Ling, Wenying Xu, Jinping Hua, Zhen Su
Software Mentions: 4
Published: over 11 years ago

10.1186/s12864-018-5265-x

Corn dried distillers grains with solubles (cDDGS) in the diet of pigs change the expression of adipose genes that are potential therapeutic targets in metabolic and cardiovascular diseases
Cited by: 6
Author(s): Maria Oczkowicz, Tomasz Szmatoła, Małgorzata Świątkiewicz, Klaudia Pawlina-Tyszko, Artur Gurgul, Tomasz Ząbek
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.22121

Angiotensin II receptor type 1 A1166C modifies the association between angiotensinogen M235T and chronic kidney disease
Cited by: 0
Author(s): Sui-Lung Su, Wei Teing Chen, Po‐Jen Hsiao, Kuo Cheng Lu, Yuh Feng Lin, Chin Lin, Weixu Su, Shih Jen Yeh, Hung Chang, Fu Huang Lin
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40168-017-0328-9

Blood as a route of transmission of uterine pathogens from the gut to the uterus in cows
Cited by: 73
Author(s): Seong-Jeub Jeon, Federico Cunha, A. Vieira-Neto, R.C. Bicalho, Svetlana Lima, M.L.S. Bicalho, Klibs N. Galvão
Software Mentions: 4
Published: almost 9 years ago

10.7717/peerj.8417

16S rRNA metagenomic analysis of the bacterial community associated with turf grass seeds from low moisture and high moisture climates
Cited by: 17
Author(s): Qiang Chen, William A. Meyer, Qiuwei Zhang, James F. White
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.11956

Small-scale variation in a pristine montane cloud forest: evidence on high soil fungal diversity and biogeochemical heterogeneity
Cited by: 1
Author(s): Patricia Vélez, Yunuen Tapia-Torres, Felipe Garcı́a-Oliva, Jaime Gasca-Pineda
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.8042

Chronic trace metals effects of mine tailings on estuarine assemblages revealed by environmental DNA
Cited by: 44
Author(s): Ângelo F. Bernardino, Fabiano Sviatopolk-Mirsky Pais, Louisi Souza de Oliveira, Fabrício Ângelo Gabriel, Tiago Osório Ferreira, Hermano Melo Queiroz, Ana Carolina de Azevedo Mazzuco
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13058-020-01279-6

Investigation of the adolescent female breast transcriptome and the impact of obesity
Cited by: 8
Author(s): Adam Burkholder, Dennis Akrobetu, Arun R. Pandiri, Kiki Ton, Sue Kim, Brian I. Labow, Laura C. Nuzzi, Joseph M. Firriolo, Sallie S. Schneider, Suzanne E. Fenton, Natalie D Shaw
Software Mentions: 4
Published: about 6 years ago

10.3389/fphys.2021.601952

Weighted Gene Co-expression Network Analysis Identifies Crucial Genes Mediating Progression of Carotid Plaque
Cited by: 9
Author(s): Mengyin Chen, Siliang Chen, Dan Yang, Jiawei Zhou, Bao Liu, Yuexin Chen, Wei Ye, Hui Zhang, Lei Ji, Yuehong Zheng
Software Mentions: 4
Published: over 5 years ago

10.1186/s12898-016-0106-8

Palaeoenvironmental drivers of vertebrate community composition in the Belly River Group (Campanian) of Alberta, Canada, with implications for dinosaur biogeography
Cited by: 22
Author(s): Thomas M. Cullen, David C. Evans
Software Mentions: 4
Published: over 9 years ago

10.1093/femsec/fiy194

Prokaryotic communities of Indo-Pacific giant barrel sponges are more strongly influenced by geography than host phylogeny
Cited by: 24
Author(s): Thomas Swierts, Daniel F. R. Cleary, Nicole J. de Voogd
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pntd.0007921

Comparative genomics and full-length Tprk profiling of Treponema pallidum subsp. pallidum reinfection
Cited by: 18
Author(s): Amin Addetia, Lauren C. Tantalo, Michelle J. Lin, Hong Xie, Meei‐Li Huang, Christina M. Marra, Alexander L. Greninger
Software Mentions: 4
Published: over 6 years ago

10.1111/j.1574-6968.2011.02339.x

Genome sequence of Staphylococcus lugdunensis N920143 allows identification of putative colonization and virulence factors
Cited by: 78
Author(s): Simon Heilbronner, Matthew T. G. Holden, Andries J. van Tonder, Joan A. Geoghegan, Timothy J. Foster, Julian Parkhill, Stephen D. Bentley
Software Mentions: 4
Published: about 15 years ago

10.1186/s12864-018-4505-4

Transcriptome profiles in peripheral white blood cells at the time of artificial insemination discriminate beef heifers with different fertility potential
Cited by: 28
Author(s): Sarah Dickinson, Brock A. Griffin, Michelle F Elmore, L. A. Kriese-Anderson, J. Bradford Elmore, Paul W. Dyce, Soren P. Rodning, Fernando H. Biase
Software Mentions: 4
Published: over 8 years ago

10.1080/19490976.2021.1875797

Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth
Cited by: 6
Author(s): Nishat Tasnim, Candice Quin, S K Gill, Chunping Dai, Miranda M. Hart, Deanna L. Gibson
Software Mentions: 4
Published: over 5 years ago

10.3389/fphys.2019.01226

Integrative Analysis of miRNA and mRNA Expression Profiles Associated With Human Atrial Aging
Cited by: 12
Author(s): Yan Yao, Chen‐Xi Jiang, Fan Wang, Han Yan, Deyong Long, Jinghua Zhao, Jiangang Wang, Chunxiao Zhang, Yang Li, Xiao-Li Tian, Qing Kenneth Wang, Gang Wu, Zhihui Zhang
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0236944

Impact of time and temperature on gut microbiota and SCFA composition in stool samples
Cited by: 9
Author(s): Janet L. Cunningham, Ludvig Bramstång, Abhijeet Singh, Shishanthi Jayarathna, Annica J. Rasmusson, Ali A. Moazzami, Bettina Müller
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-016-3219-8

Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans
Cited by: 21
Author(s): J.R. Peterson, Sheng Shee Thor, Lars Köhler, Petra R. A. Kohler, William W. Metcalf, Zaida Luthey‐Schulten
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-017-4214-4

Metabolic differentiation of surface and invasive cells of yeast colony biofilms revealed by gene expression profiling
Cited by: 13
Author(s): Jana Maršíková, Derek Wilkinson, Otakar Hlaváček, Gregor D. Gilfillan, Alexandru Mizeranschi, Timothy R. Hughes, Markéta Begany, Stanislava Rešetárová, Libuše Váchová, Zdena Palková
Software Mentions: 4
Published: almost 9 years ago

10.3390/cancers12113425

The Intersection between Oral Microbiota, Host Gene Methylation and Patient Outcomes in Head and Neck Squamous Cell Carcinoma
Cited by: 29
Author(s): Zigui Chen, Pak-Kin Wong, Cherrie W K Ng, Linda Lan, S. Fung, Jing W Li, Liuyang Cai, Pu Liao, Qianqian Mou, Sunny H. Wong, William Ka Kei Wu, Ryan J. Li, Katie Meehan, Vivian Wai Yan Lui, Chit Chow, Kwok Wai Lo, Amy B.W. Chan, Siaw Shi Boon, Eric S. H. Lau, Zenon W C Yeung, K.C. Allen Chan, Eddy W.Y. Wong, Alfred Sze‐Lok Cheng, Jun Yu, Paul Kay Sheung Chan, Jason Ying Kuen Chan
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyt.2020.00052

Lower Serum Uric Acid Is Associated With Post-Stroke Depression at Discharge
Cited by: 14
Author(s): Li Guo, Jinfeng Miao, Wenzhe Sun, Xiaoyan Song, Yan Lan, Xin Zhao, Xiuli Qiu, Chenyan Zhang, Zhou Zhu, Suiqiang Zhu
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2018.02107

ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data
Cited by: 46
Author(s): Aaron M. Rosenfeld, Wenzhao Meng, Eline T. Luning Prak, Uri Hershberg
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12864-019-5734-x

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
Cited by: 66
Author(s): Elizabeth A. Cooper, Zachary Brenton, Barry S. Flinn, Jerry Jenkins, Shengqiang Shu, Dave Flowers, Feng Luo, Yunsheng Wang, Penny Xia, Kerrie Barry, Chris Daum, Anna Lipzen, Yuko Yoshinaga, Jeremy Schmutz, Christopher Saski, Wilfred Vermerris, Stephen Kresovich
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.189

Using multi-scale distribution and movement effects along a montane highway to identify optimal crossing locations for a large-bodied mammal community
Cited by: 13
Author(s): Richard Schuster, Heinrich Römer, Ryan R. Germain
Software Mentions: 4
Published: almost 13 years ago

10.1186/s12864-019-5738-6

GScluster: network-weighted gene-set clustering analysis
Cited by: 11
Author(s): Susan A. Yoon, Jinhwan Kim, Seon‐Kyu Kim, Bukyung Baik, Sang-Mun Chi, Seon‐Young Kim, Dougu Nam
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-021-07731-x

Exposure to hypoxia causes stress erythropoiesis and downregulates immune response genes in spleen of mice
Cited by: 16
Author(s): Haijing Wang, Daoxin Liu, Pengfei Song, Feng Jiang, Xiaowei Chi, Tongzuo Zhang
Software Mentions: 4
Published: about 5 years ago

10.18632/oncotarget.9421

microRNA-7-5p inhibits melanoma cell proliferation and metastasis by suppressing RelA/NF-κB
Cited by: 66
Author(s): Keith M. Giles, Rikki A. M. Brown, Clarissa Ganda, Melissa J. Podgorny, Patrick A. Candy, Larissa Wintle, Kirsty Richardson, Felicity C. Kalinowski, Lisa M. Stuart, Michael R. Epis, Nikolas K. Haass, Meenhard Herlyn, Peter J. Leedman
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2021.667257

Microbiome Structure of the Aphid Myzus persicae (Sulzer) Is Shaped by Different Solanaceae Plant Diets
Cited by: 12
Author(s): Bin He, Xiaoyulong Chen, Hong Yang, Tomislav Cernava
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-015-2270-1

Comprehensive evaluation of AmpliSeq transcriptome, a novel targeted whole transcriptome RNA sequencing methodology for global gene expression analysis
Cited by: 66
Author(s): Wenli Li, Amy Turner, Praful Aggarwal, Andrea Matter, Erin Storvick, Donna K. Arnett, Ulrich Broeckel
Software Mentions: 4
Published: over 10 years ago