10.1038/s41598-020-71888-w

Local management and landscape structure determine the assemblage patterns of spiders in vegetable fields
Cited by: 11
Author(s): Hafiz Sohaib Ahmed Saqib, Junhui Chen, Wei Chen, Gábor Pozsgai, Komivi Senyo Akutse, Muhammad Furqan Ashraf, Minsheng You, Geoff M. Gurr
Software Mentions: 4
Published: almost 6 years ago

10.3390/nu12102938

Diet Quality, Food Groups and Nutrients Associated with the Gut Microbiota in a Nonwestern Population
Cited by: 17
Author(s): Ángela S García-Vega, Vanessa Corrales-Agudelo, Alejandro Reyes, Juan S. Escobar
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2019.00119

Screening for Sugarcane Root Phenes Reveals That Reducing Tillering Does Not Lead to an Increased Root Mass Fraction
Cited by: 7
Author(s): J. Pierre, Jai M. Perroux, Andrew Rae
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-59210-0

Species-specific genetic variation in response to deep-sea environmental variation amongst Vulnerable Marine Ecosystem indicator taxa
Cited by: 16
Author(s): Cong Zeng, Ashley A. Rowden, Malcolm R. Clark, Jonathan P. A. Gardner
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.5649

Molecular biogeography and host relations of a parasitoid fly
Cited by: 8
Author(s): David A. Gray, Henry D. Kunerth, Marlene Zuk, William H. Cade, Susan L. Balenger
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12859-018-2555-x

Protein complexes identification based on go attributed network embedding
Cited by: 21
Author(s): Bo Xu, Kun Li, Wei Zheng, Xiaoxia Liu, Yijia Zhang, Zhehuan Zhao, Zengyou He
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0225658

Highly multiplexed quantitative PCR-based platform for evaluation of chicken immune responses
Cited by: 15
Author(s): Dominika Borowska, Richard Kuo, Richard Bailey, Kellie Watson, Pete Kaiser, Lonneke Vervelde, Mark P. Stevens
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-90990-1

Contextual prediction errors reorganize naturalistic episodic memories in time
Cited by: 4
Author(s): Fahd Yazin, Moumita Das, Arpan Banerjee, Dipanjan Roy
Software Mentions: 4
Published: about 5 years ago

10.1111/evo.13865

Altitude and life‐history shape the evolution of<i>Heliconius</i>wings
Cited by: 25
Author(s): Gabriela Montejo‐Kovacevich, Jennifer E. Smith, Joana I. Meier, Caroline Bacquet, Eva Whiltshire-Romero, Nicola J. Nadeau, Chris D. Jiggins
Software Mentions: 4
Published: almost 7 years ago

10.1083/jcb.202004010

mTORC1 activity is supported by spatial association with focal adhesions
Cited by: 35
Author(s): Yoana Rabanal‐Ruiz, Adam Byron, Alexander Wirth, Ralitsa R. Madsen, Lucia Sedlackova, Graeme Hewitt, Glyn Nelson, Julian Stingele, Jimi Wills, Tong Zhang, André Zeug, Reinhard Fässler, Bart Vanhaesebroeck, Oliver D.K. Maddocks, Evgeni Ponimaskin, Bernadette Carroll, Viktor I. Korolchuk
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0245249

Characteristics and driving mechanisms of species beta diversity in desert plant communities
Cited by: 9
Author(s): Longyang Jiang, Guanghui Lv, Yanming Gong, Yan Li, Hengfang Wang, Deyan Wu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0042381

Geological Substrates Shape Tree Species and Trait Distributions in African Moist Forests
Cited by: 76
Author(s): Adeline Fayolle, Bettina M. J. Engelbrecht, Vincent Freycon, Frédéric Mortier, Michael Swaine, Maxime Réjou‐Méchain, Jean‐Louis Doucet, Nicolas Fauvet, Guillaume Cornu, Sylvie Gourlet‐Fleury
Software Mentions: 4
Published: almost 14 years ago

10.1002/ece3.7447

The impact of aquaculture on the genetics and distribution of the onuphid annelid <i>Diopatra biscayensis</i>
Cited by: 2
Author(s): Matthew P. Galaska, David S. Wethey, Andrés Arias, Stanislas F. Dubois, Kenneth M. Halanych, Sarah A. Woodin
Software Mentions: 4
Published: over 5 years ago

10.3390/molecules24142562

Assessing Geographical Origin of Gentiana Rigescens Using Untargeted Chromatographic Fingerprint, Data Fusion and Chemometrics
Cited by: 13
Author(s): Tao Shen, Hong Yu, Yuanzhong Wang
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-020-72749-2

Intra-subject consistency of spontaneous eye blink rate in young women across the menstrual cycle
Cited by: 2
Author(s): Esmeralda Hidalgo-Lopez, Georg Zimmermann, Belinda Pletzer
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.669883

The Seasonal Flux and Fate of Dissolved Organic Carbon Through Bacterioplankton in the Western North Atlantic
Cited by: 11
Author(s): Nicholas Baetge, Michael J. Behrenfeld, James Fox, Kimberly H. Halsey, Kristina D. A. Mojica, Anai Novoa, Brandon M. Stephens, Craig A. Carlson
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0239874

Seasonal patterns of ecological uniqueness of anuran metacommunities along different ecoregions in Western Brazil
Cited by: 7
Author(s): Karoline Ceron, Diego José Santana, Francisco Valente‐Neto
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphys.2020.00312

Living on the Edge: Physiological and Kinetic Trade-Offs Shape Thermal Tolerance in Intertidal Crabs From Tropical to Sub-Antarctic South America
Cited by: 7
Author(s): Samuel Coelho Faria, Adalto Bianchini, Mariana Machado Lauer, Ana Lúcia Ribeiro Latorre Zimbardi, Federico Tapella, M. Carolina Romero, John Campbell McNamara
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-015-0742-x

Extensive identification and analysis of conserved small ORFs in animals
Cited by: 162
Author(s): Sebastian D. Mackowiak, Henrik Zauber, Chris Bielow, Denise Thiel, Kamila Kutz, Lorenzo Calviello, Guido Mastrobuoni, Nikolaus Rajewsky, Stefan Kempa, Matthias Selbach, Benedikt Obermayer
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmicb.2018.02590

Two Populations of Mites (Tyrophagus putrescentiae) Differ in Response to Feeding on Feces-Containing Diets
Cited by: 18
Author(s): Jan Hubert, Marta Nešvorná, B. Sopko, Jaroslav Smrž, Pavel B. Klimov, Tomáš Erban
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0149282

Large-Scale Modelling of the Environmentally-Driven Population Dynamics of Temperate Aedes albopictus (Skuse)
Cited by: 42
Author(s): Kamil Erguler, Stephanie E. Smith-Unna, Joanna Waldock, Yiannis Proestos, George K. Christophides, Jos Lelieveld, Paul E. Parham
Software Mentions: 4
Published: over 10 years ago

10.1111/eva.12825

Signatures of adaptive divergence among populations of an avian species of conservation concern
Cited by: 10
Author(s): Shawna J. Zimmerman, Cameron L. Aldridge, Kevin P. Oh, Robert S. Cornman, Sara J. Oyler‐McCance
Software Mentions: 4
Published: about 7 years ago

10.1242/jeb.242430

Cognitive maps in the wild: revealing the use of metric information in black howler monkey route navigation
Cited by: 5
Author(s): Miguel de Guinea, Alejandro Estrada, K. A. I. Nekaris, Sarie Van Belle
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.5992

Generalist <i>Eimeria</i> species in rodents: Multilocus analyses indicate inadequate resolution of established markers
Cited by: 13
Author(s): Víctor Hugo Jarquín‐Díaz, Alice Balard, Anna Mácová, Jenny Jost, Tabea Roth von Szepesbéla, Karin Berktold, Steffen Tank, Jana Kvičerová, Emanuel Heitlinger
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-016-3304-z

High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays
Cited by: 32
Author(s): Marie‐Cécile Dufour, Noël Magnin, Bernard Dumas, Sophie Vergnes, Marie‐France Corio‐Costet
Software Mentions: 4
Published: over 9 years ago

10.1080/19490976.2020.1822729

Metagenomic analysis reveals distinct patterns of gut lactobacillus prevalence, abundance, and geographical variation in health and disease
Cited by: 20
Author(s): Tarini Shankar Ghosh, Jerome Arnoux, Paul W. O’Toole
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep08397

Diversity in gut bacterial community of school-age children in Asia
Cited by: 189
Author(s): Jiro Nakayama, Koichi Watanabe, Jiahui Jiang, Kazunori Matsuda, Shiou Huei Chao, Pri Haryono, Orawan La-ongkham, Martinus Agus Sarwoko, I Nengah Sujaya, Liang Zhao, Kang Ting Chen, Yen Po Chen, Hsueh Hui Chiu, Tomoko Hidaka, Na Huang, Chikako Kiyohara, Takashi Kurakawa, Naoshige Sakamoto, Kenji Sonomoto, Kousuke Tashiro, Hirokazu Tsuji, Ming Ju Chen, Vichai Leelavatcharamas, Chii Cherng Liao, Sunee Nitisinprasert, Endang Sri Rahayu, Fa Zheng Ren, Yao‐Chou Tsai, Yuan Kun Lee
Software Mentions: 4
Published: over 11 years ago

10.3390/foods10030673

Chemical Profile and Bioactivities of Extracts from Edible Plants Readily Available in Portugal
Cited by: 16
Author(s): Beatríz Silva, Vasco Cadavez, Pedro Ferreira-Santos, Maria José Alves, Isabel C.F.R. Ferreira, Lillian Barros, J. A. Teixeira, Úrsula Gonzales-Barrón
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.589005

Elucidation of the miR164c-Guided Gene/Protein Interaction Network Controlling Seed Vigor in Rice
Cited by: 5
Author(s): Kerui Huang, Shiqi Zhou, Kaimin Shen, Yan Zhou, Feng Wang, Xiaocheng Jiang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-16007-y

Warming, shading and a moth outbreak reduce tundra carbon sink strength dramatically by changing plant cover and soil microbial activity
Cited by: 31
Author(s): Mathilde Borg Dahl, Anders Priemé, Asker Brejnrod, Peter Brusvang, Magnus Lund, Josephine Nymand, Magnus Kramshøj, H. Ro‐Poulsen, Merian Skouw Haugwitz
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0207345

Understanding the sexual recruitment of one of the oldest and largest organisms on Earth, the seagrass Posidonia oceanica
Cited by: 12
Author(s): Laura Guerrero‐Meseguer, Carlos Sanz‐Lázaro, Antonio Riquelme Marín
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0172579

The diversity and evolution of ecological and environmental citizen science
Cited by: 183
Author(s): Michael J. O. Pocock, John C. Tweddle, Joanna Savage, Lucy D. Robinson, Helen E. Roy
Software Mentions: 4
Published: over 9 years ago

10.1186/s12967-018-1755-5

Serum protein signature of coronary artery disease in type 2 diabetes mellitus
Cited by: 28
Author(s): Ramu Adela, Podduturu Naveen Chander Reddy, Tarini Shankar Ghosh, Suruchi Aggarwal, Amit Kumar Yadav, Bhabatosh Das, Sanjay K. Banerjee
Software Mentions: 4
Published: over 7 years ago

10.3389/fonc.2020.00418

Comparison and Fusion of Deep Learning and Radiomics Features of Ground-Glass Nodules to Predict the Invasiveness Risk of Stage-I Lung Adenocarcinomas in CT Scan
Cited by: 36
Author(s): Xianwu Xia, Jing Gong, Hao Wen, Ting Yang, Yeqing Lin, Shengping Wang, Weijun Peng
Software Mentions: 4
Published: over 6 years ago

10.1186/1758-2946-4-28

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis
Cited by: 16
Author(s): Sunghwan Kim, Evan Bolton, Stephen H. Bryant
Software Mentions: 4
Published: almost 14 years ago

10.3390/toxins12010004

Alteration of Bumblebee Venom Composition toward Higher Elevation
Cited by: 7
Author(s): Nezahat Pınar Barkan, Mathieu Chevalier, Jean‐Nicolas Pradervand, Antoine Guisan
Software Mentions: 4
Published: over 6 years ago

10.1186/s12866-021-02230-1

A synbiotic intervention modulates meta-omics signatures of gut redox potential and acidity in elective caesarean born infants
Cited by: 12
Author(s): Christophe Lay, Collins Wenhan Chu, Rikky W. Purbojati, Enzo Acerbi, Daniela I. Drautz–Moses, Paola Flórez de Sessions, Jié Song, Eliza Xin Pei Ho, Yee Jiun Kok, Xinyan Bi, Shuwen Chen, Shi Ya Mak, Mei Chien Chua, Angela Goh, Wen Chin Chiang, Rajeshwar Rao, Surasith Chaithongwongwatthana, Nipon Khemapech, Voranush Chongsrisawat, Rocı́o Martı́n, Yanqing Koh, Sachin R. Lohar, Ivan Chin Hin Tan, Wong Anng Anng, Jie Chen, Nana Bartke, Kaouther Ben-Amor, Ingrid B. Renes, Fiona Wong, Guus Roeselers, Ying Swan Ho, Martin L. Hibberd, Stephan C. Schuster, Jan Knol
Software Mentions: 4
Published: about 5 years ago

10.1098/rspb.2020.1070

Phylogenetic and functional distinctiveness explain alien plant population responses to competition
Cited by: 10
Author(s): Sam Levin, Raelene M. Crandall, Tyler Pokoski, Cláudia Stein, Tiffany M. Knight
Software Mentions: 4
Published: about 6 years ago

10.1186/s13567-014-0114-7

Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle
Cited by: 25
Author(s): Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc’H, Hélène Verheyden, Loïc Legrand, Véronique Bachy, Luc Chabanne, Guy Joncour, Renaud Maillard, Henri-Jean Boulouis, Nadia Haddad, Xavier Bailly, Agnès Leblond
Software Mentions: 4
Published: over 11 years ago

10.1186/s40462-021-00283-5

Simulation experiment to test strategies of geomagnetic navigation during long-distance bird migration
Cited by: 6
Author(s): Beate Zein, Jed A. Long, Kamran Safi, Andrea Kölzsch, Martin Wikelski, Helmut Kruckenberg, Urška Demšar
Software Mentions: 4
Published: almost 5 years ago

10.3389/fneur.2018.00015

Assessment of Platelet Function in Traumatic Brain Injury—A Retrospective Observational Study in the Neuro-Critical Care Setting
Cited by: 24
Author(s): Caroline Lindblad, Eric Peter Thelin, Michael Nekludov, Arvid Frostell, David W. Nelson, Mikael Svensson, Bo‐Michael Bellander
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.6973

Morphometric and genetic evidence for four species of gentoo penguin
Cited by: 10
Author(s): Joshua Tyler, Matthew T. Bonfitto, Gemma V. Clucas, Srinivas K. Reddy, Jane L. Younger
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpubh.2015.00250

Seasonal Influenza Epidemics and El Niños
Cited by: 13
Author(s): Oluleke Oluwole
Software Mentions: 4
Published: over 10 years ago

10.1186/s40168-017-0301-7

Environmental drivers of viral community composition in Antarctic soils identified by viromics
Cited by: 87
Author(s): Evelien M. Adriaenssens, Rolf Kramer, Marc W. Van Goethem, Thulani P. Makhalanyane, Ian D. Hogg, Don A. Cowan
Software Mentions: 4
Published: about 9 years ago

10.3390/pathogens10080975

Effect of Temperature on the Expression of Classical Enterotoxin Genes among Staphylococci Associated with Bovine Mastitis
Cited by: 5
Author(s): Theeyathart Homsombat, Sukolrat Boonyayatra, Nattakarn Awaiwanont, Duangporn Pichpol
Software Mentions: 4
Published: about 5 years ago

10.1093/gigascience/gix078

fastBMA: scalable network inference and transitive reduction
Cited by: 6
Author(s): Ling‐Hong Hung, Kaiyuan Shi, Migao Wu, William Chad Young, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 4
Published: almost 9 years ago

10.1007/s10071-020-01345-8

Why do dogs look back at the human in an impossible task? Looking back behaviour may be over-interpreted
Cited by: 31
Author(s): Martina Lazzaroni, Sarah Marshall-Pescini, Helena Manzenreiter, Sarah Gosch, Lucy Přibilová, Larissa Darc, Jim McGetrick, Friederike Range
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.5097

American marten and fisher do not segregate in space and time during winter in a mixed‐forest system
Cited by: 13
Author(s): Elizabeth Croose, Florent Bled, Nicholas L. Fowler, Dean E. Beyer, Jerrold L. Belant
Software Mentions: 4
Published: over 7 years ago

10.3389/fonc.2021.584896

Comprehensive and Computable Molecular Diagnostic Panel (C2Dx) From Small Volume Specimens for Precision Oncology: Molecular Subtyping of Non-Small Cell Lung Cancer From Fine Needle Aspirates
Cited by: 3
Author(s): Jing Su, Lynn S. Huang, Ryan Barnard, Graham Parks, James O. Cappellari, Christina Bellinger, Travis Dotson, Lou Craddock, Bharat Prakash, Jonathan T. Hovda, Hollins P. Clark, W. Jeffrey Petty, Boris Pasche, Michael D. Chan, Lance D. Miller, Jimmy Ruiz
Software Mentions: 4
Published: over 5 years ago

10.1242/jcs.181248

Nuclear PKC-θ facilitates rapid transcriptional responses in human memory CD4+ T cells <i>via</i> p65 and H2B phosphorylation
Cited by: 11
Author(s): Jasmine Li, Kristine Hardy, Chansavath Phetsouphanh, Wen Juan Tu, Elissa L Sutcliffe, Robert McCuaig, Christopher R Sutton, Anjum Zafar, C. Mee Ling Munier, John Zaunders, Xu Yin, Angelo Theodoratos, Abel Tan, Pek Siew Lim, Tobias Knaute, Antonia Masch, Johannes Zerweck, Vedran Brezar, Peter J. Milburn, Jenny C. Dunn, Marco G. Casarotto, Stephen J. Turner, Nabila Seddiki, Anthony D. Kelleher, Sudha Rao
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0124467

A Four-Compartment Metabolomics Analysis of the Liver, Muscle, Serum, and Urine Response to Polytrauma with Hemorrhagic Shock following Carbohydrate Prefeed
Cited by: 15
Author(s): Nancy E. Witowski, Elizabeth R. Lusczek, Charles Determan, Daniel R. Lexcen, Kristine E. Mulier, Beverly Gaul Ostrowski, Greg J. Beilman
Software Mentions: 4
Published: over 11 years ago

10.3389/fimmu.2019.02985

TCR Convergence in Individuals Treated With Immune Checkpoint Inhibition for Cancer
Cited by: 29
Author(s): Timothy J. Looney, Denise Topacio-Hall, Geoffrey Lowman, Jeffrey M. Conroy, Carl Morrison, David Y. Oh, Lawrence Fong, Li Zhang
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.01201

Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom
Cited by: 93
Author(s): Jin Zhou, Mindy L. Richlen, Taylor R. Sehein, David M. Kulis, Donald M. Anderson, Zhonghua Cai
Software Mentions: 4
Published: about 8 years ago

10.3389/fnhum.2018.00226

Metabolomic Profiles for Primary Progressive Multiple Sclerosis Stratification and Disease Course Monitoring
Cited by: 42
Author(s): Daniel Stoessel, Jan‐Patrick Stellmann, Anne Willing, Birte Behrens, Sina Cathérine Rosenkranz, Sibylle Hodecker, Klarissa Hanja Stürner, Stefanie Reinhardt, Sabine Fleischer, Christian Deuschle, Walter Maetzler, Daniela Berg, Christoph Heesen, Dirk Walther, Nicolas Schauer, Manuel A. Friese, Ole Pleß
Software Mentions: 4
Published: about 8 years ago

10.18632/oncotarget.22947

Spatial habitats from multiparametric MR imaging are associated with signaling pathway activities and survival in glioblastoma
Cited by: 19
Author(s): Katherine Dextraze, Abhijoy Saha, Donnie Kim, Shivali Narang, Michael Lehrer, Aroor R. Rao, Saphal Narang, Dinesh Rao, Salmaan Ahmed, Venkatesh S Madhugiri, Clifton D. Fuller, Michelle M. Kim, Sunil Krishnan, Ganesh Rao, Arvind Rao
Software Mentions: 4
Published: over 8 years ago

10.1186/s12936-019-2687-0

Impact of sunlight exposure on the residual efficacy of biolarvicides Bacillus thuringiensis israelensis and Bacillus sphaericus against the main malaria vector, Anopheles gambiae
Cited by: 13
Author(s): Barnabas Zogo, Bertin N’Cho Tchiekoi, Alphonsine A. Koffi, Amal Dahounto, Ludovic P. Ahoua Alou, Roch K. Dabiré, Lamine Baba-Moussa, Nicolas Moiroux, Cédric Pennetier
Software Mentions: 4
Published: over 7 years ago

10.3390/e20120923

A Bayesian Failure Prediction Network Based on Text Sequence Mining and Clustering
Cited by: 9
Author(s): Wenbing Chang, Zhenzhong Xu, You Meng, Shenghan Zhou, Yiyong Xiao, Yang Cheng
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2021.679133

Identification of Epithelial–Mesenchymal Transition-Related Prognostic lncRNAs Biomarkers Associated With Melanoma Microenvironment
Cited by: 10
Author(s): Bo Xiao, Liyan Liu, Zhuoyuan Chen, Aoyu Li, Pingxiao Wang, Xiang Cheng, Yi Zeng, Hui Li, Tao Xiao
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-57840-y

Assessment of malathion toxicity on cytophysiological activity, DNA damage and antioxidant enzymes in root of Allium cepa model
Cited by: 39
Author(s): Akhileshwar Kumar Srivastava, Divya Singh
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1002949

Identification of FAM111A as an SV40 Host Range Restriction and Adenovirus Helper Factor
Cited by: 54
Author(s): Debrah A. Fine, Orit Rozenblatt-Rosen, Megha Padi, Anna Korkhin, Robert James, Guillaume Adelmant, Rosa Yoon, Lifei Guo, Christian Berrios, Ying Zhang, Michael A. Calderwood, Soundarapandian Velmurgan, Jingwei Cheng, Jarrod A. Marto, David E. Hill, Michael E. Cusick, Marc Vidal, Laurence Florens, Michael P. Washburn, Larisa Litovchick, James A. DeCaprio
Software Mentions: 4
Published: almost 14 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago

10.3389/fdata.2019.00002

Deep Representation Learning for Social Network Analysis
Cited by: 39
Author(s): Qiaoyu Tan, Ninghao Liu, Xia Hu
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0231125

Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress
Cited by: 14
Author(s): Jihwan Lee, Mi Kyung Lee, Jun-Kyu Son, Hyeonju Lim, Euntae Kim, Dong-Hyun Kim, Seungmin Ha, Tai-Young Hur, Seung Hwan Lee, Inchul Choi
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-71804-2

Genetic variation regulates opioid-induced respiratory depression in mice
Cited by: 18
Author(s): Jason A. Bubier, Hao He, Vivek Philip, Tyler A Roy, Christian Monroy Hernandez, Rebecca Bernat, Kevin D. Donohue, Bruce F. O’Hara, Elissa J. Chesler
Software Mentions: 4
Published: almost 6 years ago

10.1007/s00394-018-1767-1

Metabolite profiles evaluated, according to sex, do not predict resting energy expenditure and lean body mass in healthy non-obese subjects
Cited by: 8
Author(s): M. Armbruster, M Rist, Stephanie Seifert, Lara Frommherz, Christoph H. Weinert, Carina Mack, Alexander Röth, Benedikt Merz, Diana Bunzel, Ralf Krüger, Sabine E. Kulling, Bernhard Watzl, Achim Bub
Software Mentions: 4
Published: about 8 years ago

10.1007/s10198-020-01213-9

Using machine learning to assess the predictive potential of standardized nursing data for home healthcare case-mix classification
Cited by: 1
Author(s): Maud H. de Korte, Gertjan S. Verhoeven, Arianne Elissen, Silke Metzelthin, Dirk Ruwaard, Misja Mikkers
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0227882

Comparison of the myometrial transcriptome from singleton and twin pregnancies by RNA-Seq
Cited by: 5
Author(s): Sarah Arrowsmith, Yongxiang Fang, Andrew Sharp
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1004635

IFNγ Signaling Endows DCs with the Capacity to Control Type I Inflammation during Parasitic Infection through Promoting T-bet+ Regulatory T Cells
Cited by: 24
Author(s): Hyang-Mi Lee, Anne Fleige, Ruth Forman, Sunglim Cho, Aly A. Khan, Ling-Li Lin, Duc T. Nguyen, Aisling O’Hara Hall, Zhinan Yin, Christopher A. Hunter, Werner Müller, Li-Fan Lu
Software Mentions: 4
Published: over 11 years ago

10.1126/scitranslmed.abf1906

The neutralizing antibody, LY-CoV555, protects against SARS-CoV-2 infection in nonhuman primates
Cited by: 314
Author(s): Bryan E. Jones, Patricia Brown‐Augsburger, Kizzmekia S. Corbett, Kathryn Westendorf, Julian Davies, Thomas P. Cujec, Christopher M. Wiethoff, Jamie L. Blackbourne, Beverly A. Heinz, Denisa Foster, Richard E. Higgs, Deepa Balasubramaniam, Lingshu Wang, Yi Zhang, Eun Sung Yang, Roza Bidshahri, Lucas Kraft, Yuri Hwang, Stefanie Žentelis, Kevin Jepson, Rodrigo Goya, Maia A. Smith, David W. Collins, Samuel J. H. Hinshaw, Sean A. Tycho, Davide Pellacani, Ping Xiang, Krithika Muthuraman, Solmaz Sobhanifar, Marissa H. Piper, Franz J Triana, J. Hendle, Anna Pustilnik, Andrew C. Adams, Shawn J. Berens, Ralph S. Baric, David R. Martinez, Robert W. Cross, Thomas W. Geisbert, Viktoriya Borisevich, Olubukola M. Abiona, Hayley M. Belli, Maren de Vries, Adil Mohamed, Meike Dittmann, Marie I. Samanovic, Mark J. Mulligan, Jory A. Goldsmith, Ching Lin Hsieh, Nicole V. Johnson, Daniel Wrapp, Jason S. McLellan, Bryan C. Barnhart, Barney S. Graham, John R. Mascola, Carl L. Hansen, Ester Falconer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0206665

Identification of highly connected and differentially expressed gene subnetworks in metastasizing endometrial cancer
Cited by: 11
Author(s): Kanthida Kusonmano, Mari K. Halle, Elisabeth Wik, Erling A. Høivik, Camilla Krakstad, Karen Klepsland Mauland, Ingvild L. Tangen, Ansgar Berg, Henrica M.J. Werner, Jone Trovik, Anne Margrete Øyan, Karl‐Henning Kalland, Inge Jonassen, Helga B. Salvesen, Kjell Petersen
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0137171

Discovery of a Novel Immune Gene Signature with Profound Prognostic Value in Colorectal Cancer: A Model of Cooperativity Disorientation Created in the Process from Development to Cancer
Cited by: 22
Author(s): Ning An, Xiaoyu Shi, Yueming Zhang, Ning Lv, Feng Li, Di Xia, Ning Han, Guiqi Wang, Shujun Cheng, Kaitai Zhang
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0086699

Meta-Analysis and Gene Set Analysis of Archived Microarrays Suggest Implication of the Spliceosome in Metastatic and Hypoxic Phenotypes
Cited by: 2
Author(s): Bertrand De Meulder, Fabrice Berger, Eric Bareke, Sophie Depiereux, Carine Michiels, Eric Depiereux
Software Mentions: 4
Published: over 12 years ago

10.1128/mBio.02317-16

<i>Plasmodium falciparum Maf1</i> Confers Survival upon Amino Acid Starvation
Cited by: 26
Author(s): Kyle Jarrod McLean, Marcelo Jacobs‐Lorena
Software Mentions: 4
Published: over 9 years ago

10.3390/diagnostics9030079

Rethinking ME/CFS Diagnostic Reference Intervals via Machine Learning, and the Utility of Activin B for Defining Symptom Severity
Cited by: 7
Author(s): Brett A. Lidbury, Badia Kita, Alice Richardson, Donald P. Lewis, Edwina Privitera, Susan Hayward, David de Kretser, Mark P. Hedger
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0236348

Unraveling the molecular pathobiology of vocal fold systemic dehydration using an in vivo rabbit model
Cited by: 8
Author(s): Naíla Cannes do Nascimento, Andrea Pires dos Santos, M. Preeti Sivasankar, Abigail Cox
Software Mentions: 4
Published: about 6 years ago

10.1038/s41396-020-00859-w

Mapping the adaptive landscape of a major agricultural pathogen reveals evolutionary constraints across heterogeneous environments
Cited by: 18
Author(s): Anik Dutta, Fanny E. Hartmann, C. L. Francisco, Bruce A. McDonald, Daniel Croll
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.ppat.1009804

Identification of immune correlates of fatal outcomes in critically ill COVID-19 patients
Cited by: 34
Author(s): Jonathan Youngs, Nicholas M. Provine, Nicholas Lim, Hannah Sharpe, Ali Amini, Yi‐Ling Chen, Jian Luo, Matthew Edmans, Panagiota Zacharopoulou, Wentao Chen, Oliver Sampson, Robert S Paton, William J Hurt, David A. Duncan, Anna L McNaughton, Vincent N. Miao, Susannah Leaver, Duncan Wyncoll, Jonathan Ball, P Hopkins, Donal Skelly, Eleanor Barnes, Susanna Dunachie, Graham Ogg, Teresa Lambe, Ian D. Pavord, Alex K. Shalek, Craig Thompson, Luzheng Xue, Derek C. Macallan, Philip Goulder, Paul Klenerman, Tihana Bicanic
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.68876

High potency of sequential therapy with only β-lactam antibiotics
Cited by: 24
Author(s): Aditi Batra, Roderich Roemhild, Emilie Rousseau, Sören Franzenburg, Stefan Niemann, Hinrich Schulenburg
Software Mentions: 4
Published: about 5 years ago

10.1016/j.csbj.2020.06.001

Plasma lipidomic biomarker analysis reveals distinct lipid changes in vascular dementia
Cited by: 15
Author(s): Yue Liu, Daniel Kam Yin Chan, Anbupalam Thalamuthu, Wen Wang, Jiyang Jiang, Matthew Paradise, Teresa Lee, John D. Crawford, Matthew Wai Kin Wong, Ying Xu, Anne Poljak, Russell Pickford, Perminder S. Sachdev, Nady Braidy
Software Mentions: 4
Published: over 6 years ago

10.3389/fpsyg.2018.02040

One Direction? A Tutorial for Circular Data Analysis Using R With Examples in Cognitive Psychology
Cited by: 88
Author(s): Jolien Cremers, Irene Klugkist
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13148-018-0439-6

DNA methylation as a predictor of fetal alcohol spectrum disorder
Cited by: 76
Author(s): Alexandre A. Lussier, Alexander M. Morin, Julia L. MacIsaac, Jenny Salmon, Joanne Weinberg, James N. Reynolds, Paul Pavlidis, Albert E. Chudley, Michæl S. Kobor
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms20102570

Coupling Genome-wide Transcriptomics and Developmental Toxicity Profiles in Zebrafish to Characterize Polycyclic Aromatic Hydrocarbon (PAH) Hazard
Cited by: 35
Author(s): Prarthana Shankar, Mitra C. Geier, Lisa Truong, Ryan McClure, Paritosh Pande, Katrina M. Waters, Robert L. Tanguay
Software Mentions: 4
Published: about 7 years ago

10.1186/1476-4598-13-241

OvMark: a user-friendly system for the identification of prognostic biomarkers in publically available ovarian cancer gene expression datasets
Cited by: 22
Author(s): Stephen F. Madden, Colin Clarke, Britta K. Stordal, Mark Carey, Russell Broaddus, William M. Gallagher, John Crown, Gordon B. Mills, Bryan T. Hennessy
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0124721

Wavelet Representation of the Corneal Pulse for Detecting Ocular Dicrotism
Cited by: 5
Author(s): Tomasz Melcer, Monika E. Danielewska, D. Robert Iskander
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0220228

Being accurate about accuracy in verbal deception detection
Cited by: 18
Author(s): Bennett Kleinberg, Arnoud Arntz, Bruno Verschuere
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0199950

The analysis of genome composition and codon bias reveals distinctive patterns between avian and mammalian circoviruses which suggest a potential recombinant origin for Porcine circovirus 3
Cited by: 20
Author(s): Giovanni Franzo, Joaquím Segalés, Claudia Maria Tucciarone, Mattia Cecchinato, Michele Drigo
Software Mentions: 4
Published: about 8 years ago

10.2196/22422

Deep Neural Network for Reducing the Screening Workload in Systematic Reviews for Clinical Guidelines: Algorithm Validation Study
Cited by: 9
Author(s): Tomohide Yamada, Daisuke Yoneoka, Yuta Hiraike, Kimihiro Hino, Hiroyoshi Toyoshiba, Akira Shishido, Hisashi Noma, Nobuhiro Shojima, Toshimasa Yamauchi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228503

Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity
Cited by: 33
Author(s): Marietta Herrmann, Anne Babler, Irina Moshkova, Felix Gremse, Fabian Kießling, Ulrike Kusebauch, Valentin Nelea, Rafael Kramann, Robert L. Moritz, Marc D. McKee, Willi Jahnen‐Dechent
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0207840

Improving the calling of non-invasive prenatal testing on 13-/18-/21-trisomy by support vector machine discrimination
Cited by: 13
Author(s): Jianfeng Yang, Xueliang Ding, Weidong Zhu
Software Mentions: 4
Published: over 7 years ago

10.3389/fpls.2020.563187

Genome Wide Association Studies in Multiple Spinach Breeding Populations Refine Downy Mildew Race 13 Resistance Genes
Cited by: 21
Author(s): Gehendra Bhattarai, Ainong Shi, Chunda Feng, Braham Dhillon, Beiquan Mou, James C. Correll
Software Mentions: 4
Published: almost 6 years ago

10.12688/f1000research.6831.1

Molecular Dynamics Simulations of the Temperature Induced Unfolding of Crambin Follow the Arrhenius Equation.
Cited by: 3
Author(s): Andrew R. Dalby, Mohd Shahir Shamsir
Software Mentions: 4
Published: almost 11 years ago

10.1098/rstb.2015.0212

Ochre star mortality during the 2014 wasting disease epizootic: role of population size structure and temperature
Cited by: 100
Author(s): Morgan E. Eisenlord, Maya L. Groner, Reyn Yoshioka, Joel K. Elliott, Jeffrey Maynard, Steven C. Fradkin, Margaret Turner, Katie Pyne, Natalie Rivlin, Ruben van Hooidonk, C. Drew Harvell
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0255298

Northern bobwhite select for shrubby thickets interspersed in grasslands during fall and winter
Cited by: 2
Author(s): Alisha R. Mosloff, Mitch D. Weegman, Frank R. Thompson, Thomas R. Thompson
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1006314

Pleiotropic Associations of Allelic Variants in a 2q22 Region with Risks of Major Human Diseases and Mortality
Cited by: 26
Author(s): Alexander M. Kulminski, Liyun He, Irina Culminskaya, Yury Loika, Yelena Kernogitski, Konstantin G. Arbeev, Elena Loiko, Liubov Arbeeva, Olivia Bagley, Matt Duan, Arseniy Yashkin, Fang Fang, Mikhail Kovtun, Svetlana V. Ukraintseva, Deqing Wu, Anatoliy I. Yashin
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0241209

Pediatric emergency care in a low-income country: Characteristics and outcomes of presentations to a tertiary-care emergency department in Mozambique
Cited by: 6
Author(s): Valentina Brugnolaro, Laura Nai Fovino, Serena Calgaro, Giovanni Putoto, Arlindo Muhelo, Darío Gregori, Danila Azzolina, Silvia Bressan, Liviana Da Dalt
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0256147

Reactive anti-predator behavioral strategy shaped by predator characteristics
Cited by: 9
Author(s): Meredith S. Palmer, Craig Packer
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0185848

Impact of social inequalities at birth on the longevity of children born 1914–1916: A cohort study
Cited by: 3
Author(s): Nicolas Todd, Sophie Le Fur, Pierre Bougnères, Alain‐Jacques Valleron
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0122143

Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
Cited by: 27
Author(s): Pushpinder Bawa, Sajna Zackaria, Mohit Verma, Saurabh Gupta, Srivatsan Raghunathan, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0206108

Peritumoral radiomics features predict distant metastasis in locally advanced NSCLC
Cited by: 100
Author(s): T Dou, Thibaud Coroller, Joost J.M. van Griethuysen, Raymond H. Mak, Hugo J.W.L. Aerts
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.1720

A comparison of clustering methods for biogeography with fossil datasets
Cited by: 11
Author(s): Matthew J. Vavrek
Software Mentions: 4
Published: over 10 years ago