10.3389/fmicb.2016.00902

Reconstructing the Genetic Potential of the Microbially-Mediated Nitrogen Cycle in a Salt Marsh Ecosystem
Cited by: 27
Author(s): Francisco Dini‐Andreote, Maria Julia de Lima Brossi, Jan Dirk van Elsas, Joana Falccao Salles
Software Mentions: 4
Published: about 10 years ago

10.3389/fnmol.2018.00288

Dysregulation of MicroRNAs and Target Genes Networks in Peripheral Blood of Patients With Sporadic Amyotrophic Lateral Sclerosis
Cited by: 84
Author(s): Maria Liguori, Nicoletta Nuzziello, Alessandro Introna, Arianna Consiglio, Flavio Licciulli, Eustachio D’Errico, Antonio Scarafino, Eugenio Distaso, Isabella Laura Simone
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.540404

The Total and Active Bacterial Community of the Chlorolichen Cetraria islandica and Its Response to Long-Term Warming in Sub-Arctic Tundra
Cited by: 10
Author(s): Ingeborg J. Klarenberg, Christoph Keuschnig, Denis Warshan, Ingibjörg S. Jónsdóttir, Oddur Vilhelmsson
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01361

Biochar Amendment Stimulates Utilization of Plant-Derived Carbon by Soil Bacteria in an Intercropping System
Cited by: 33
Author(s): Hongkai Liao, Yaying Li, Huaiying Yao
Software Mentions: 4
Published: about 7 years ago

10.3389/fpubh.2020.00451

Bacterial Genome Wide Association Studies (bGWAS) and Transcriptomics Identifies Cryptic Antimicrobial Resistance Mechanisms in Acinetobacter baumannii
Cited by: 6
Author(s): Chandler C. Roe, Charles H. D. Williamson, Adam J. Vazquez, Kristen Kyger, Michael Valentine, Jolene R. Bowers, P.D. Phillips, Veronica Harrison, Elizabeth M. Driebe, David M. Engelthaler, Jason W. Sahl
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.00267

Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide Exposures
Cited by: 8
Author(s): Jordyn Bergsveinson, James W. Roy, Christine Maynard, Sylvie Sanschagrin, Claire N. Freeman, G. D. W. Swerhone, James J. Dynes, Julien Tremblay, Charles W. Greer, Darren R. Korber, John R. Lawrence
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.644540

Motor Stereotypic Behavior Was Associated With Immune Response in Macaques: Insight From Transcriptome and Gut Microbiota Analysis
Cited by: 3
Author(s): Xuan Pan, Fangyuan Liu, Yang Song, Hongrun Wang, Lingyun Wang, Hong Qiu, Megan Price, Jing Li
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.542742

Testing the Two-Step Model of Plant Root Microbiome Acquisition Under Multiple Plant Species and Soil Sources
Cited by: 14
Author(s): Hugo R. Barajas, Shamayim Martínez-Sánchez, Miguel Romero, Cristóbal Hernández Álvarez, Luis Servı́n‐González, Mariana Peimbert, Rocío Cruz-Ortega, Felipe Garcı́a-Oliva, Luis David Alcaraz
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2020.531404

Cross Inoculation of Rumen Fluid to Improve Dry Matter Disappearance and Its Effect on Bacterial Composition Using an in vitro Batch Culture Model
Cited by: 2
Author(s): Katie McDermott, Michael R. F. Lee, Kenneth J. McDowall, H.M.R. Greathead
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0223680

Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools
Cited by: 51
Author(s): Xiaofang Jiang, Andrew Brantley Hall, Ramnik J. Xavier, Eric J. Alm
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.3162

The genomic sequence of<i>Exiguobacterium chiriqhucha</i>str. N139 reveals a species that thrives in cold waters and extreme environmental conditions
Cited by: 14
Author(s): Ana Gutiérrez-Preciado, Carlos Vargas-Chávez, Mariana Reyes-Prieto, Omar Federico Ordoñez, Diego Santos-García, Tania Rosas-Pérez, Jorge Valdivia-Anistro, Eria A. Rebollar, Andrés Saralegui, Andrés Moya, Enrique Merino, Marı́a Eugenia Farı́as, Amparo Latorre, Valeria Souza
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2021.619141

The Gut Microbial Composition Is Species-Specific and Individual-Specific in Two Species of Estrildid Finches, the Bengalese Finch and the Zebra Finch
Cited by: 12
Author(s): Öncü Maracı, Anna Antonatou-Papaioannou, Sebastian Jünemann, Omar Castillo-Gutiérrez, Tobias Busche, Jörn Kalinowski, Barbara A. Caspers
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2017.01561

Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
Cited by: 211
Author(s): Luisa W. Hugerth, Anders F. Andersson
Software Mentions: 4
Published: almost 9 years ago

10.15252/msb.20156108

Cell cycle networks link gene expression dysregulation, mutation, and brain maldevelopment in autistic toddlers
Cited by: 72
Author(s): Tiziano Pramparo, Michael Lombardo, Kathleen Campbell, Cynthia Carter Barnes, Steven Marinero, Stephanie Solso, Julia Young, Maisi Mayo, Anders M. Dale, Clelia Ahrens‐Barbeau, Sarah Murray, Linda Lopez, Nathan E. Lewis, Karen Pierce, Eric Courchesne
Software Mentions: 4
Published: over 10 years ago

10.1099/mgen.0.000456

Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone
Cited by: 14
Author(s): Eleonora Tassinari, Matt Bawn, Gaëtan Thilliez, Oliver J. Charity, Luke Acton, Mark Kirkwood, Liljana Petrovska, Timothy J. Dallman, Catherine M. Burgess, Neil Hall, Geraldine Duffy, Robert A. Kingsley
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2019.02060

Moving Beyond the Host: Unraveling the Skin Microbiome of Endangered Costa Rican Amphibians
Cited by: 19
Author(s): Randall R. Jiménez, Gilbert Alvarado, Josimar Estrella, Simone Sommer
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2021.618169

Composition of Rhizosphere Microbial Communities Associated With Healthy and Verticillium Wilt Diseased Cotton Plants
Cited by: 24
Author(s): Feng Wei, Hongjie Feng, Dezheng Zhang, Zili Feng, Lihong Zhao, Yalin Zhang, Greg Deakin, Peng Jun, Heqin Zhu, Xiangming Xu
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.01061

Profiling of the Transcriptomic Responses of Clonostachys rosea Upon Treatment With Fusarium graminearum Secretome
Cited by: 26
Author(s): Zerihun A. Demissie, Simon J. Foote, Yifang Tan, Michèle C. Loewen
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2017.02269

Bacterial Succession on Sinking Particles in the Ocean's Interior
Cited by: 40
Author(s): Erik A. Pelve, Kristina M. Fontanez, Edward F. DeLong
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2015.00065

Computational prediction of molecular pathogen-host interactions based on dual transcriptome data
Cited by: 48
Author(s): Sylvie Schulze, Sebastian Henkel, Dominik Driesch, Reinhard Guthke, Jörg Linde
Software Mentions: 4
Published: over 11 years ago

10.3389/fmicb.2021.576763

Responses of Soil Fungal Communities to Lime Application in Wheat Fields in the Pacific Northwest
Cited by: 5
Author(s): Chuntao Yin, Daniel Schlatter, Duncan R. Kroese, Timothy C. Paulitz, Christina H. Hagerty
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.01245

Outbreaks of an Emerging Viral Disease Covary With Differences in the Composition of the Skin Microbiome of a Wild United Kingdom Amphibian
Cited by: 23
Author(s): Lewis J. Campbell, Trenton W. J. Garner, Kevin Hopkins, Amber Gieselle Firefly Griffiths, Xavier A. Harrison
Software Mentions: 4
Published: about 7 years ago

10.3389/fmicb.2018.01339

Arbuscular Mycorrhizal Symbiosis Leads to Differential Regulation of Drought-Responsive Genes in Tissue-Specific Root Cells of Common Bean
Cited by: 29
Author(s): Gustavo Henrique Recchia, Enéas Ricardo Konzen, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Siu Mui Tsai
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2020.00490

Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races
Cited by: 12
Author(s): Thomas M. Adams, Andrew D. Armitage, Maria K. Sobczyk, Helen Bates, Javier F. Tabima, Brent Kronmiller, Brett M. Tyler, Niklaus J. Grünwald, Jim M. Dunwell, Charlotte F. Nellist, Richard J. Harrison
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2021.627569

Soil Metagenomics Reveals Effects of Continuous Sugarcane Cropping on the Structure and Functional Pathway of Rhizospheric Microbial Community
Cited by: 64
Author(s): Ziqin Pang, Fei Dong, Qiang Liu, Wenxiong Lin, Chaohua Hu, Zhaonian Yuan
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1009285

ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves
Cited by: 26
Author(s): Eric D. Musselman, Jake E. Cariello, Warren M. Grill, Nicole A. Pelot
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2019.01988

Evaluation of the Nasopharyngeal Microbiota in Beef Cattle Transported to a Feedlot, With a Focus on Lactic Acid-Producing Bacteria
Cited by: 20
Author(s): Samat Amat, Devin B. Holman, Edouard Timsit, Timothy Schwinghamer, Trevor W. Alexander
Software Mentions: 4
Published: almost 7 years ago

10.3389/fmicb.2020.01259

Interactive Gene Expression Patterns of Susceptible and Resistant Lens ervoides Recombinant Inbred Lines and the Necrotroph Ascochyta lentis
Cited by: 1
Author(s): Zhe Cao, Karan Kapoor, Li Li, Sabine Banniza
Software Mentions: 4
Published: about 6 years ago

10.3389/fvets.2020.519601

Management Practices Associated With Prevalence of Lameness in Lambs in 2012–2013 in 1,271 English Sheep Flocks
Cited by: 3
Author(s): Katharine E. Lewis, Laura Green
Software Mentions: 4
Published: almost 6 years ago

10.1183/13993003.03201-2020

Plasma metabolomics exhibit response to therapy in chronic thromboembolic pulmonary hypertension
Cited by: 23
Author(s): Emilia M. Swietlik, Pavandeep Ghataorhe, Kasia Zalewska, John Wharton, Luke Howard, Dolores Taboada, John Cannon, Nicholas W. Morrell, Martin R. Wilkins, Mark Toshner, Joanna Pepke‐Zaba, Christopher J. Rhodes
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2017.00944

Adaptations to High Salt in a Halophilic Protist: Differential Expression and Gene Acquisitions through Duplications and Gene Transfers
Cited by: 43
Author(s): Tommy Harding, Andrew J. Roger, Alastair G. B. Simpson
Software Mentions: 4
Published: about 9 years ago

10.3390/genes11121503

Seascape Genomics of the Sugar Kelp Saccharina latissima along the North Eastern Atlantic Latitudinal Gradient
Cited by: 14
Author(s): Jaromir Guzinski, Paolo Ruggeri, Marion Ballenghien, Stéphane Mauger, Bertrand Jacquemin, Chloé Jollivet, Jérôme Coudret, Lucie Jaugeon, Christophe Destombe, Myriam Valéro
Software Mentions: 4
Published: over 5 years ago

10.1111/eva.12904

Pattern of local adaptation to quantitative host resistance in a major pathogen of a perennial crop
Cited by: 6
Author(s): Thomas Dumartinet, Catherine Abadie, François Bonnot, Françoise Carreel, Véronique Roussel, Rémy Habas, Reina Teresa Martínez, Luis Pérez-Vicente, Jean Carlier
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2018.01626

Transcriptomic Profiles of Senegalese Sole Infected With Nervous Necrosis Virus Reassortants Presenting Different Degree of Virulence
Cited by: 23
Author(s): Alejandro M. Labella, Esther García-Rosado, Isabel Bandı́n, Carlos P. Dopazo, Dolores Castro, M. Carmen Alonso, Juan J. Borrego
Software Mentions: 4
Published: about 8 years ago

10.3389/fimmu.2018.00182

Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota
Cited by: 160
Author(s): Helen Groves, Leah Cuthbertson, Phillip James, Miriam F. Moffatt, Michael J. Cox, John S. Tregoning
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2018.01693

Immunophenotype and Transcriptome Profile of Patients With Multiple Sclerosis Treated With Fingolimod: Setting Up a Model for Prediction of Response in a 2-Year Translational Study
Cited by: 28
Author(s): Ivo Torres, C. Garcı́a, Marco Marconi, Aránzazu García-Grande, Luis Rodríguez‐Esparragoza, Vı́ctor Elvira, Elvira Ramil, Lucía Campos-Ruíz, Ruth García-Hernández, Fátima Al‐Shahrour, Coral Fustero-Torre, Alicia Sánchez-Sanz, Antonio Garcı́a-Merino, A.J. Sánchez López
Software Mentions: 4
Published: about 8 years ago

10.3389/fimmu.2021.663736

MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients
Cited by: 8
Author(s): Fatima Heinicke, Xiao Zhong, Siri Tennebø Flåm, Johannes Breidenbach, Magnus Leithaug, Marthe Thoresen Mæhlen, Siri Lillegraven, Anna‐Birgitte Aga, Ellen Sauar Norli, Maria D Mjaavatten, Espen A. Haavardsholm, Manuela Zucknick, Simon Rayner, Benedicte A. Lie
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0143412

Transcriptome Analysis of Plant Hormone-Related Tomato (Solanum lycopersicum) Genes in a Sunlight-Type Plant Factory
Cited by: 10
Author(s): Yusuke Tanigaki, Takanobu Higashi, Kotaro Takayama, Atsushi J. Nagano, Mie N. Honjo, Hirokazu Fukuda
Software Mentions: 4
Published: over 10 years ago

10.1186/1752-0509-3-93

Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle
Cited by: 11
Author(s): Pierre R. Bushel, Nicholas A. Heard, Roee Gutman, Liwen Liu, Shyamal D. Peddada, Saumyadipta Pyne
Software Mentions: 4
Published: almost 17 years ago

10.1371/journal.pone.0036634

Do Natural Proteins Differ from Random Sequences Polypeptides? Natural vs. Random Proteins Classification Using an Evolutionary Neural Network
Cited by: 23
Author(s): Davide De Lucrezia, Debora Slanzi, Irene Poli, Fabio Polticelli, Giovanni Minervini
Software Mentions: 4
Published: about 14 years ago

10.3389/fimmu.2019.00795

Elevated CCL19/CCR7 Expression During the Disease Process of Primary Sjögren's Syndrome
Cited by: 18
Author(s): Zhenwei Liu, Fengxia Li, Axiao Pan, Huangqi Xue, Shan Jiang, Ce Zhu, Mengmeng Jin, Jinxia Fang, Xiongzhao Zhu, Matthew A. Brown, Xiaobing Wang
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-70641-7

Surgical procedures in the pilonidal sinus disease: a systematic review and network meta-analysis
Cited by: 32
Author(s): Siwei Bi, Kaibo Sun, Shanshan Chen, Jun Gu
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpubh.2021.729559

Efficacy of COVID-19 Treatments: A Bayesian Network Meta-Analysis of Randomized Controlled Trials
Cited by: 25
Author(s): Chenyang Zhang, Huaqing Jin, Yi Feng Wen, Guosheng Yin
Software Mentions: 4
Published: almost 5 years ago

10.3389/fimmu.2021.685237

Key Macrophage Responses to Infection With Mycobacterium tuberculosis Are Co-Regulated by microRNAs and DNA Methylation
Cited by: 11
Author(s): Monika Looney, Rachel Lorenc, Marc K. Halushka, Petros C. Karakousis
Software Mentions: 4
Published: about 5 years ago

10.3389/fmed.2021.730018

Optimal Positive End Expiratory Pressure Levels in Ventilated Patients Without Acute Respiratory Distress Syndrome: A Bayesian Network Meta-Analysis and Systematic Review of Randomized Controlled Trials
Cited by: 0
Author(s): Jing Zhou, Zhihua Lin, Xiu-Mei Deng, Baiyun Liu, Yu Zhang, Yongxin Zheng, Hairong Zheng, Yingzhi Wang, Yan H. Lai, Weixiang Huang, Xiaoqing Liu, Weiqun He, Yang Xu, Yimin Li, Yongbo Huang, Ling Sang
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.6468

Leaf‐footed bugs possess multiple hidden contrasting color signals, but only one is associated with increased body size
Cited by: 5
Author(s): Zachary Emberts, Charles H. Miller, Chelsea Skojec, Rachel M. Shepherd, Colette M. St. Mary
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.695699

Integrated Analysis of mRNA- and miRNA-Seq in the Ovary of Rare Minnow Gobiocypris rarus in Response to 17α-Methyltestosterone
Cited by: 3
Author(s): Shaozhen Liu, Qiong Yang, Yue Chen, Qing Liu, Weiwei Wang, Jing Song, Yao Zheng, Wenzhong Liu
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.3504

Elevational diversity gradients of Tibetan loaches: The relative roles of ecological and evolutionary processes
Cited by: 8
Author(s): Chenguang Feng, Yongjie Wu, Fei Tian, Chao Tong, Yongtao Tang, Renyi Zhang, Guogang Li, Kai Zhao
Software Mentions: 4
Published: almost 9 years ago

10.3389/fgene.2021.662468

Hypoxia-Induced miR-148a Downregulation Contributes to Poor Survival in Colorectal Cancer
Cited by: 15
Author(s): Stepan Nersisyan, A. V. Galatenko, Milena Chekova, Alexander G. Tonevitsky
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.686

Different modes of evolution in males and females generate dichromatism in fairy-wrens (Maluridae)
Cited by: 43
Author(s): Allison E. Johnson, Joseph Price, Stephen Pruett‐Jones
Software Mentions: 4
Published: about 13 years ago

10.3389/fgene.2019.01361

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data
Cited by: 16
Author(s): Sateesh Peri, Susan C. Roberts, Isabella R Kreko, Lauren B McHan, Alexandra Naron, Archana Ram, Rebecca L. Murphy, Eric Lyons, Brian D. Gregory, Upendra Kumar Devisetty, Andrew D. L. Nelson
Software Mentions: 4
Published: over 6 years ago

10.1042/BSR20201725

A novel prognostic risk score model based on immune-related genes in patients with stage IV colorectal cancer
Cited by: 7
Author(s): Ke Xu, Jie He, Jie Zhang, Tao Liu, Fang Yang, Tao Ren
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0097508

Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish
Cited by: 36
Author(s): Andrew Jackson, Brice X. Semmens, Yvonne Sadovy de Mitcheson, Richard S. Nemeth, Scott A. Heppell, Phillippe G. Bush, Alfonso Aguilar‐Perera, John A. B. Claydon, Marta C. Calosso, Kathleen Sullivan Sealey, Michelle T. Schärer, Giacomo Bernardi
Software Mentions: 4
Published: about 12 years ago

10.3389/fgene.2021.627907

Enrichment of Circular RNA Expression Deregulation at the Transition to Recurrent Spontaneous Seizures in Experimental Temporal Lobe Epilepsy
Cited by: 13
Author(s): Andreia Gomes‐Duarte, Sebastian Bauer, Morten T. Venø, Braxton A. Norwood, David C. Henshall, Jørgen Kjems, Felix Rosenow, Vamshidhar R. Vangoor, R. Jeroen Pasterkamp
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.664260

Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
Cited by: 11
Author(s): Michelle M. Halstead, Alma Islas–Trejo, Daniel Estanislao Goszczynski, Juan F. Medrano, Huaijun Zhou, Pablo J. Ross
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2019.01036

Profiling Transcriptional Regulation and Functional Roles of Schistosoma mansoni c-Jun N-Terminal Kinase
Cited by: 5
Author(s): Sandra Grossi Gava, Naiara Clemente Tavares, Franco H. Falcone, Guilherme Oliveira, Marina Moraes Mourão
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.205

Size and shape in the evolution of ant worker morphology
Cited by: 21
Author(s): Márcio R. Pie, Marcel Kruchelski Tschá
Software Mentions: 4
Published: almost 13 years ago

10.7717/peerj.8574

The effects of phylogeny, body size, and locomotor behavior on the three-dimensional shape of the pelvis in extant carnivorans
Cited by: 8
Author(s): Kristi Lewton, Ryan Brankovic, William A. Byrd, Daniela Cruz, Jocelyn Morales, Sung Sik Shin
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.2402

Evolutionary patterns of range size, abundance and species richness in Amazonian angiosperm trees
Cited by: 29
Author(s): Kyle G. Dexter, Jérôme Chave
Software Mentions: 4
Published: almost 10 years ago

10.3389/fendo.2021.665666

Comprehensive Analysis of the Expression and Prognostic Value of SPINT1/2 in Breast Carcinoma
Cited by: 3
Author(s): Qi Wu, Guang Yin, Jing Luo, Yingzi Zhang, Tiantian Ai, Jiao Tian, Yudi Jin, Jinwei Lei, Shengchun Liu
Software Mentions: 4
Published: about 5 years ago

10.3389/fendo.2019.00840

Role of MicroRNAs in the Regulation of Subcutaneous White Adipose Tissue in Individuals With Obesity and Without Type 2 Diabetes
Cited by: 17
Author(s): Olga Brovkina, А Г Никитин, Д. С. Ходырев, Ekaterina A. Shestakova, Igor A. Sklyanik, Anna S. Panevina, Iurii Stafeev, Mikhail Menshikov, Anastasiya A. Kobelyatskaya, Anatoliy Yurasov, V. S. Fedenko, Yu I Yashkov, М. В. Шестакова
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-017-0993-0

Phylogenetic conservatism in skulls and evolutionary lability in limbs – morphological evolution across an ancient frog radiation is shaped by diet, locomotion and burrowing
Cited by: 40
Author(s): Marta Vidal‐García, J. Scott Keogh
Software Mentions: 4
Published: about 9 years ago

10.1186/s13148-021-01153-y

Betamethasone administration during pregnancy is associated with placental epigenetic changes with implications for inflammation
Cited by: 9
Author(s): Darina Czamara, Linda Dieckmann, Simone Röh, Sarah Kraemer, Rebecca C. Rancourt, Sara Sammallahti, Eero Kajantie, Hannele Laivuori, Johan G. Eriksson, Katri Räikkönen, Wolfgang Henrich, Andreas Plagemann, Elisabeth B. Binder, Thorsten Braun, Sonja Entringer
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-016-1140-8

Dual RNA-seq reveals viral infections in asthmatic children without respiratory illness which are associated with changes in the airway transcriptome
Cited by: 54
Author(s): Agata Wesolowska-Andersen, Jamie L. Everman, Rebecca M. Davidson, Cydney Rios, Rachelle Herrin, Celeste Eng, William J. Janssen, Andrew H. Liu, Sam S. Oh, Rajesh Kumar, Tasha E. Fingerlin, José Rodríguez‐Santana, Esteban G. Burchard, Max A. Seibold
Software Mentions: 4
Published: over 9 years ago

10.1186/s12974-016-0720-6

MOG-IgG in NMO and related disorders: a multicenter study of 50 patients. Part 4: Afferent visual system damage after optic neuritis in MOG-IgG-seropositive versus AQP4-IgG-seropositive patients
Cited by: 197
Author(s): Florence Pache, Hanna Zimmermann, Janine Mikolajczak, Stefan Schumacher, Anna Lacheta, Frederike Cosima Oertel, Judith Bellmann‐Strobl, Sven Jarius, Brigitte Wildemann, Markus Reindl, Amy Waldman, Kerstin Soelberg, Nasrin Asgari, Marius Ringelstein, Orhan Aktaş, Nikolai Gross, Mathias Buttmann, Thomas Ach, Klemens Ruprecht, Friedemann Paul, Alexander U. Brandt
Software Mentions: 4
Published: almost 10 years ago

10.3389/fcell.2020.00808

Integrated Microarray and RNAseq Transcriptomic Analysis of Retinal Pigment Epithelium/Choroid in Age-Related Macular Degeneration
Cited by: 10
Author(s): Dhanach Dhirachaikulpanich, Xin Li, Louise F. Porter, Luminita Paraoan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcell.2020.602731

CircRNA hsa_circ_0008500 Acts as a miR-1301-3p Sponge to Promote Osteoblast Mineralization by Upregulating PADI4
Cited by: 11
Author(s): Qiaoli Zhai, Yi Zhao, Linping Wang, Yan Dai, Peiqing Zhao, Xinxin Xiang, Kui Liu, Wei Du, Wenxiu Tian, Baoye Yang, Tao Li, Lianqing Wang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0071145

Optic Neuritis Is Associated with Inner Nuclear Layer Thickening and Microcystic Macular Edema Independently of Multiple Sclerosis
Cited by: 100
Author(s): Falko Kaufhold, Hanna Zimmermann, Eric Schneider, Klemens Ruprecht, Friedemann Paul, Timm Oberwahrenbrock, Alexander U. Brandt
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0243422

Socioeconomic and behavioral determinants of cardiovascular diseases among older adults in Belgium and France: A longitudinal analysis from the SHARE study
Cited by: 6
Author(s): Hamid Yimam Hassen, Hilde Bastiaens, Kathleen Van Royen, Steven Abrams
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228849

Prevalence and correlates of anal intercourse among female sex workers in eSwatini
Cited by: 3
Author(s): Branwen Nia Owen, Mathieu M-Giroux, Sindy Matse, Zandile Mnisi, Stefan Baral, Sosthenes Ketende, Rebecca F. Baggaley, Marie Claude Boily
Software Mentions: 4
Published: over 6 years ago

10.3389/fcell.2020.584604

Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage
Cited by: 16
Author(s): Yeliz Demırcı, Gokhan Cucun, Yusuf Kaan Poyraz, Suhaib Mohammed, Guillaume Heger, Irene Papatheodorou, Günes Özhan
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pmed.1003336

Antibiotic prescribing for lower UTI in elderly patients in primary care and risk of bloodstream infection: A cohort study using electronic health records in England
Cited by: 16
Author(s): Laura Shallcross, Patrick Rockenschaub, Ruth Blackburn, Irwin Nazareth, Nick Freemantle, Andrew Hayward
Software Mentions: 4
Published: almost 6 years ago

10.7717/peerj.2575

Monte Carlo simulation of OLS and linear mixed model inference of phenotypic effects on gene expression
Cited by: 1
Author(s): Jeffrey A. Walker
Software Mentions: 4
Published: almost 10 years ago

10.3390/pathogens10030309

Impact of Annual Albendazole versus Four-Monthly Test-and-Treat Approach of Intestinal Parasites on Children Growth—A Longitudinal Four-Arm Randomized Parallel Trial during Two Years of a Community Follow-Up in Bengo, Angola
Cited by: 2
Author(s): Carolina Gasparinho, Aguinaldo Kanjungo, Félix Zage, Isabel Clemente, Ana Santos-Reis, Miguel Brito, José Carlos Sousa-Figueiredo, Filomeno Fortes, Luzia Gonçalves
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-015-0089-2

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota
Cited by: 101
Author(s): Ethan Gough, David A. Stephens, Erica E. M. Moodie, Andrew J. Prendergast, Rebecca J. Stoltzfus, Jean H. Humphrey, Amee R. Manges
Software Mentions: 4
Published: about 11 years ago

10.1186/s12889-019-7521-7

Methods for detecting seasonal influenza epidemics using a school absenteeism surveillance system
Cited by: 9
Author(s): Madeline A. Ward, Anu Stanley, Lorna E. Deeth, Rob Deardon, Zeny Feng, Lise A. Trotz-Williams
Software Mentions: 4
Published: almost 7 years ago

10.1186/s40793-020-00364-9

Trichomes form genotype-specific microbial hotspots in the phyllosphere of tomato
Cited by: 12
Author(s): Peter Kusstatscher, Wisnu Adi Wicaksono, Alessandro Bergna, Tomislav Cernava, Nick Bergau, Alain Tissier, Bettina Hause, Gabriele Berg
Software Mentions: 4
Published: almost 6 years ago

10.1155/2013/169526

SIVIC: Open-Source, Standards-Based Software for DICOM MR Spectroscopy Workflows
Cited by: 70
Author(s): Jason C. Crane, Marram P. Olson, Sarah J. Nelson
Software Mentions: 4
Published: over 13 years ago

10.1002/ece3.7664

Alternative migratory tactics in brown trout (<i>Salmo trutta</i>) are underpinned by divergent regulation of metabolic but not neurological genes
Cited by: 3
Author(s): Robert Wynne, Louise C. Archer, Stephen A. Hutton, Luke Harman, Patrick Gargan, Peter Moran, Eileen Dillane, Jamie Coughlan, T. Cross, Philip McGinnity, Thomas J. Colgan, Thomas E. Reed
Software Mentions: 4
Published: about 5 years ago

10.1186/s12931-021-01755-3

Dysregulation of COVID-19 related gene expression in the COPD lung
Cited by: 22
Author(s): Alastair Watson, Lisa Öberg, B. Angermann, Cosma Spalluto, Michael Hühn, Hannah Burke, Doriana Cellura, Anna Freeman, Daniel Muthas, Damla Etal, Graham Belfield, Fredrik Karlsson, Karl Nordström, Kris Ostridge, Karl Staples, André Freitas
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7401

Transcriptome assembly and differential gene expression of the invasive avian malaria parasite <i>Plasmodium relictum</i> in Hawaiʻi
Cited by: 8
Author(s): Elin Videvall, Kristina L. Paxton, Michael G. Campana, Loren Cassin-Sackett, Carter T. Atkinson, Robert C. Fleischer
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.3063

Regulation of gene expression is associated with tolerance of the Arctic copepod <i>Calanus glacialis</i> to <scp>CO</scp> ₂ ‐acidified sea water
Cited by: 40
Author(s): Allison Bailey, Pierre De Wit, Peter Thor, Howard I. Browman, Reidun M. Bjelland, Steven Shema, David M. Fields, Jeffrey A. Runge, Cameron Thompson, Haakon Hop
Software Mentions: 4
Published: about 9 years ago

10.15252/embr.201847592

CDK12 controls G1/S progression by regulating RNAPII processivity at core DNA replication genes
Cited by: 57
Author(s): Anil Paul Chirackal Manavalan, Květa Pilařová, Michael Kluge, Koen Bartholomeeusen, Michal Rájecký, Jan Oppelt, Prashant Khirsariya, Kamil Paruch, Lumír Krejčí, Caroline C. Friedel, Dalibor Blažek
Software Mentions: 4
Published: about 7 years ago

10.15252/embr.201744059

Transposon‐driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution
Cited by: 33
Author(s): Matthew P Davis, Claudia Carrieri, Harpreet K. Saini, Stijn van Dongen, Tommaso Leonardi, Giovanni Bussotti, Jack Monahan, Tania Auchynnikava, Angelo Bitetti, Juri Rappsilber, Robin C. Allshire, Alena Shkumatava, Dónal O’Carroll, Anton J. Enright
Software Mentions: 4
Published: about 9 years ago

10.1186/s13326-016-0059-z

Active learning for ontological event extraction incorporating named entity recognition and unknown word handling
Cited by: 5
Author(s): Xu Han, Jung‐Jae Kim, Chee Keong Kwoh
Software Mentions: 4
Published: over 10 years ago

10.1093/database/baz156

RBPTD: a database of cancer-related RNA-binding proteins in humans
Cited by: 9
Author(s): Kun Li, Zhiwei Guo, Xiang-Ming Zhai, Xiaobo Yang, Yangyang Wu, Tiancai Liu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0209313

Mangroves in the Galapagos islands: Distribution and dynamics
Cited by: 16
Author(s): Nicolás Moity, Byron Delgado, Pelayo Salinas‐de‐León
Software Mentions: 4
Published: over 7 years ago

10.1016/j.dib.2016.05.007

Whole transcriptome data analysis of zebrafish mutants affecting muscle development
Cited by: 7
Author(s): Olivier Armant, Victor Gourain, Christelle Etard, Uwe Strähle
Software Mentions: 4
Published: almost 10 years ago

10.1016/j.crtox.2021.07.003

Reproducibility and robustness of high-throughput S1500+ transcriptomics on primary rat hepatocytes for chemical-induced hepatotoxicity assessment
Cited by: 3
Author(s): Fan Lee, Imran Shah, Yun Ting Soong, Jiangwa Xing, Inn Chuan Ng, Farah Tasnim, Hanry Yu
Software Mentions: 4
Published: over 5 years ago

10.1016/j.cub.2019.07.083

Genetically Defined Functional Modules for Spatial Orienting in the Mouse Superior Colliculus
Cited by: 60
Author(s): Laura Masullo, Letizia Mariotti, Nicolas Alexandre, Paula Freire-Pritchett, Jérôme Boulanger, Marco Tripodi
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-019-51912-4

Pollinator foraging flexibility mediates rapid plant-pollinator network restoration in semi-natural grasslands
Cited by: 13
Author(s): Norbertas Noreika, Ignasi Bartomeus, Marie Winsa, Riccardo Bommarco, Erik Öckinger
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13054-021-03623-4

Staphylococcus aureus ventilator-associated pneumonia in patients with COVID-19: clinical features and potential inference with lung dysbiosis
Cited by: 36
Author(s): Gennaro De Pascale, Flavio De Maio, Simone Carelli, Giulia De Angelis, Margherita Cacaci, Luca Montini, Giuseppe Bello, Salvatore Lucio Cutuli, Gabriele Pintaudi, Eloisa Sofia Tanzarella, Rikardo Xhemalaj, Domenico Luca Grieco, Mario Tumbarello, Maurizio Sanguinetti, Brunella Posteraro, Massimo Antonelli
Software Mentions: 4
Published: about 5 years ago

10.1186/s13059-016-0947-7

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Cited by: 858
Author(s): Aaron T. L. Lun, Karsten Bach, John C. Marioni
Software Mentions: 4
Published: over 10 years ago

10.1038/s42003-020-0804-9

Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Cited by: 55
Author(s): Arlin Keo, Ahmed Mahfouz, Angela Ingrassia, Jean Pascal Meneboo, Céline Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P. F. Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D. J. van de Berg, Jacobus J. van Hilten, Marcel J. T. Reinders
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0191426

Different in the dark: The effect of habitat characteristics on community composition and beta diversity in bromeliad microfauna
Cited by: 15
Author(s): Annika Busse, Pablo A. P. Antiqueira, Alexandre Schneid Neutzling, Anna Maria Wolf, Gustavo Q. Romero, Jana S. Petermann
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0226691

Distribution of aerophilous diatom communities associated with terrestrial green macroalgae in the South Shetland Islands, Maritime Antarctica
Cited by: 2
Author(s): Juliana Ferreira da Silva, Maria Angélica Oliveira Linton, Raylane Ribeiro da Anunciação, Eduardo Pereira da Silva, Rodrigo Paidano Alves, Adriano Luís Schünemann, Filipe de Carvalho Victória, Margéli Pereira de Albuquerque, Antônio Batista Pereira
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-020-01636-3

Single-cell transcriptomics following ischemic injury identifies a role for B2M in cardiac repair
Cited by: 39
Author(s): Bas Molenaar, Louk T. Timmer, Marjolein Droog, Ilaria Perini, Daniëlle Versteeg, Lieneke Kooijman, Jantine Monshouwer-Kloots, Hesther de Ruiter, Monika M Gladka, Eva van Rooij
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0157442

Dung Beetles along a Tropical Altitudinal Gradient: Environmental Filtering on Taxonomic and Functional Diversity
Cited by: 90
Author(s): Cássio Alencar Nunes, Rodrigo Fagundes Braga, José Eugênio Côrtes Figueira, Frederico S. Neves, G. Wilson Fernandes
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0213008

Equal but different: Natural ecotones are dissimilar to anthropic edges
Cited by: 28
Author(s): Giselle Martins Lourenço, Glória Ramos Soares, Talita P. Santos, Wesley Dáttilo, André Victor Lucci Freitas, Sérvio Pontes Ribeiro
Software Mentions: 4
Published: over 7 years ago

10.1038/s42003-021-02189-9

Claudin-2 promotes colorectal cancer liver metastasis and is a biomarker of the replacement type growth pattern
Cited by: 24
Author(s): Sébastien Tabariès, Matthew G. Annis, Anthoula Lazaris, Stephanie Petrillo, Jennifer Huxham, A. Achour, Vincent Palmieri, Jaclyn M. Chabot, Radia Marie Johnson, Steven Van Laere, Cornelis Verhoef, Yasmina Hachem, Sara Yumeen, Nicholas Meti, Atilla Ömeroğlu, Gulbeyaz Altinel, Zu‐Hua Gao, Alan Yu, Dirk J. Grünhagen, Peter B. Vermeulen, Peter Metrakos, Peter M. Siegel
Software Mentions: 4
Published: about 5 years ago