10.1186/s13059-020-02062-8

Removal of H2Aub1 by ubiquitin-specific proteases 12 and 13 is required for stable Polycomb-mediated gene repression in Arabidopsis
Cited by: 26
Author(s): Lejon E. M. Kralemann, S. Liu, Minerva S. Trejo-Arellano, Rafael Muñoz‐Viana, Claudia Köhler, Lars Hennig
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00692-19

The Gut Microbiota in Camellia Weevils Are Influenced by Plant Secondary Metabolites and Contribute to Saponin Degradation
Cited by: 39
Author(s): Shouke Zhang, Jinping Shu, Huai‐Jun Xue, Wei Zhang, Yabo Zhang, Yaning Liu, Linxin Fang, Yangdong Wang, Haojie Wang
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.7401

Transcriptome assembly and differential gene expression of the invasive avian malaria parasite <i>Plasmodium relictum</i> in Hawaiʻi
Cited by: 8
Author(s): Elin Videvall, Kristina L. Paxton, Michael G. Campana, Loren Cassin-Sackett, Carter T. Atkinson, Robert C. Fleischer
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-019-1894-x

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains
Cited by: 76
Author(s): Elissavet Kentepozidou, Sarah J. Aitken, Christine Feig, Klara Stefflova, Ximena Ibarra-Soria, Duncan T. Odom, Maša Roller, Paul Flicek
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.ppat.1008968

Analysis of KSHV B lymphocyte lineage tropism in human tonsil reveals efficient infection of CD138+ plasma cells
Cited by: 12
Author(s): Farizeh Aalam, Romina Nabiee, Jesus Ramirez Castano, Jennifer Totonchy
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2021.705724

New Estimation of Antibiotic Resistance Genes in Sediment Along the Haihe River and Bohai Bay in China: A Comparison Between Single and Successive DNA Extraction Methods
Cited by: 0
Author(s): Chao Wu, Guicheng Zhang, Wenzhe Xu, Shan Jian, Liyin Peng, Dai Jia, Jun Sun
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2021.643731

Seed Banks as Incidental Fungi Banks: Fungal Endophyte Diversity in Stored Seeds of Banana Wild Relatives
Cited by: 11
Author(s): Rowena Hill, Theo Llewellyn, Elizabeth Downes, Joseph Oddy, Catriona MacIntosh, Simon Kallow, Bart Panis, John B. Dickie, Ester Gaya
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2020.572706

Influence of Season and Soil Properties on Fungal Communities of Neighboring Climax Forests (Carpinus cordata and Fraxinus rhynchophylla)
Cited by: 10
Author(s): Ki Hyeong Park, Seung‐Yoon Oh, Shinnam Yoo, Jonathan J. Fong, Changsun Kim, Jong Won Jo, Young Woon Lim
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13059-019-1705-4

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination
Cited by: 31
Author(s): Anne-Sophie Fiorucci, Clara Bourbousse, Lorenzo Concia, Martin Rougée, Anne-Flore Deton-Cabanillas, Gérald Zabulon, Elodie Layat, David Latrasse, Soon Kap Kim, Nicole Chaumont, Bérangère Lombard, David Stroebel, Sophie Lemoine, Ammara Mohammad, Corinne Blugeon, Damarys Loew, Christophe Bailly, Chris Bowler, Moussa Benhamed, Frédy Barneche
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.7664

Alternative migratory tactics in brown trout (<i>Salmo trutta</i>) are underpinned by divergent regulation of metabolic but not neurological genes
Cited by: 3
Author(s): Robert Wynne, Louise C. Archer, Stephen A. Hutton, Luke Harman, Patrick Gargan, Peter Moran, Eileen Dillane, Jamie Coughlan, T. Cross, Philip McGinnity, Thomas J. Colgan, Thomas E. Reed
Software Mentions: 4
Published: about 5 years ago

10.1186/s13059-018-1551-9

Alternative polyadenylation factors link cell cycle to migration
Cited by: 21
Author(s): Mithun Mitra, Elizabeth L. Johnson, Vinay Swamy, Lois E Nersesian, David C. Corney, David G. Robinson, Daniel Taylor, Aaron M. Ambrus, David Jelínek, Wei Wang, Sandra Batista, Hilary A. Coller
Software Mentions: 4
Published: almost 8 years ago

10.3389/fonc.2020.00681

Identification of Hub Genes Associated With Development of Head and Neck Squamous Cell Carcinoma by Integrated Bioinformatics Analysis
Cited by: 50
Author(s): Chia‐Ying Li, Jia-Hua Cai, Jeffrey J. P. Tsai, Charles C.N. Wang
Software Mentions: 4
Published: about 6 years ago

10.1128/mBio.02302-20

Identification of Zinc-Dependent Mechanisms Used by Group B <i>Streptococcus</i> To Overcome Calprotectin-Mediated Stress
Cited by: 27
Author(s): Lindsey R. Burcham, Yoann Le Breton, Jana N. Radin, Brady L. Spencer, Liwen Deng, Aurélia Hiron, Monica Ransom, Jéssica da C. Mendonça, Ashton T. Belew, Najib M. El-Sayed, Kevin S. McIver, Thomas E. Kehl-Fie, Kelly S. Doran
Software Mentions: 4
Published: over 5 years ago

10.3389/fimmu.2021.547333

The Immune Heterogeneity Between Pulmonary Adenocarcinoma and Squamous Cell Carcinoma: A Comprehensive Analysis Based on lncRNA Model
Cited by: 11
Author(s): Tao Yan, Guoyuan Ma, Kai Wang, Weidong Liu, W. L. Zhong, Jiajun Du
Software Mentions: 4
Published: about 5 years ago

10.3390/genes10120979

Transcriptome Analysis of the Cecal Tonsil of Jingxing Yellow Chickens Revealed the Mechanism of Differential Resistance to Salmonella
Cited by: 12
Author(s): Fei Wang, Jin Zhang, Bo Zhu, Jie Wang, Qiao Wang, Maiqing Zheng, Jie Wen, Qinghe Li, Guiping Zhao
Software Mentions: 4
Published: over 6 years ago

10.1155/2013/169526

SIVIC: Open-Source, Standards-Based Software for DICOM MR Spectroscopy Workflows
Cited by: 70
Author(s): Jason C. Crane, Marram P. Olson, Sarah J. Nelson
Software Mentions: 4
Published: over 13 years ago

10.1155/2021/8848227

A Novel Autophagy-Related lncRNA Gene Signature to Improve the Prognosis of Patients with Melanoma
Cited by: 10
Author(s): Yi Ding, Li Tian, Min Li, Tuersong Tayier, Meilin Zhang, Long Chen, Shumei Feng
Software Mentions: 4
Published: about 5 years ago

10.3390/genes10020089

A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment
Cited by: 12
Author(s): Sheng‐Kai Hsu, Ana Marija Jakšić, Viola Nolte, Neda Barghi, François Mallard, Kerstin Otte, Christian Schlötterer
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.203184

The circadian clock is associated with prognosis and immune infiltration in stomach adenocarcinoma
Cited by: 13
Author(s): Zhihao Huang, Aoxiao He, Jiakun Wang, Hongmei Lü, Rongguiyi Zhang, Linquan Wu, Qian Feng
Software Mentions: 4
Published: about 5 years ago

10.1186/s40793-020-00364-9

Trichomes form genotype-specific microbial hotspots in the phyllosphere of tomato
Cited by: 12
Author(s): Peter Kusstatscher, Wisnu Adi Wicaksono, Alessandro Bergna, Tomislav Cernava, Nick Bergau, Alain Tissier, Bettina Hause, Gabriele Berg
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes9090431

Comparative Transcriptomics of Root Development in Wild and Cultivated Carrots
Cited by: 16
Author(s): Gabriela Machaj, Hamed Bostan, Alicja Macko-Podgórni, Massimo Iorizzo, Dariusz Grzebelus
Software Mentions: 4
Published: almost 8 years ago

10.1016/j.patter.2020.100008

gfoRmula: An R Package for Estimating the Effects of Sustained Treatment Strategies via the Parametric g-formula
Cited by: 30
Author(s): Seán McGrath, Victoria Lin, Zilu Zhang, Lucia Petito, Roger Logan, Miguel A. Hernán, Jessica Young
Software Mentions: 4
Published: about 6 years ago

10.3390/genes8030090

Rapid Sampling of Escherichia coli After Changing Oxygen Conditions Reveals Transcriptional Dynamics
Cited by: 17
Author(s): Joachim von Wulffen, Andreas Ulmer, Günter Jäger, Oliver Sawodny, Ronny Feuer
Software Mentions: 4
Published: over 9 years ago

10.3389/fonc.2020.597877

Identification of a Glycolysis-Related LncRNA Signature to Predict Survival in Diffuse Glioma Patients
Cited by: 11
Author(s): Yangyang Wang, Wenqiang Zhou, Shunchang Ma, Xiudong Guan, Dainan Zhang, Jiayi Peng, Xi Wang, Linhao Yuan, Peiliang Li, Beibei Mao, Kang Peng, Deling Li, Chuanbao Zhang, Wang Jia
Software Mentions: 4
Published: over 5 years ago

10.1186/s12889-019-7521-7

Methods for detecting seasonal influenza epidemics using a school absenteeism surveillance system
Cited by: 9
Author(s): Madeline A. Ward, Anu Stanley, Lorna E. Deeth, Rob Deardon, Zeny Feng, Lise A. Trotz-Williams
Software Mentions: 4
Published: almost 7 years ago

10.1093/g3journal/jkab190

Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes
Cited by: 3
Author(s): Jaclyn M. Noshay, Zhikai Liang, Peng Zhou, Peter A. Crisp, Alexandre P. Marand, Candice N. Hirsch, Robert J. Schmitz, Nathan M. Springer
Software Mentions: 4
Published: about 5 years ago

10.1186/s13024-018-0303-3

Inhibition of monocyte-like cell extravasation protects from neurodegeneration in DBA/2J glaucoma
Cited by: 44
Author(s): Pete A. Williams, Catherine E. Braine, Krishnakumar Kizhatil, Nicole E. Foxworth, Nicholas G. Tolman, Jeffrey M. Harder, R. Scott, Gregory L. Sousa, Alyssa Panitch, Gareth R. Howell, Simon W. M. John
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.119.400152

Early Developmental Stress Affects Subsequent Gene Expression Response to an Acute Stress in Atlantic Salmon: An Approach for Creating Robust Fish for Aquaculture?
Cited by: 23
Author(s): Nick Robinson, Hanne Johnsen, Hooman K. Moghadam, Øivind Andersen, Helge Tveiten
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-015-0089-2

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota
Cited by: 101
Author(s): Ethan Gough, David A. Stephens, Erica E. M. Moodie, Andrew J. Prendergast, Rebecca J. Stoltzfus, Jean H. Humphrey, Amee R. Manges
Software Mentions: 4
Published: about 11 years ago

10.1534/g3.118.200789

Dynamic Interactions Between the Genome and an Endogenous Retrovirus: <i>Tirant</i> in <i>Drosophila simulans</i> Wild-Type Strains
Cited by: 4
Author(s): Marie Fablet, Angelo Jacquet, Rita Rebollo, Annabelle Haudry, Colette Rey, Judit Salces-Ortiz, Prajakta Bajad, Nelly Burlet, Michael F. Jantsch, Maria Pilar García Guerreiro, Cristina Vieira
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0177480

Anomalous diffusion on the servosphere: A potential tool for detecting inherent organismal movement patterns
Cited by: 29
Author(s): Naohisa Nagaya, Nobuaki Mizumoto, Masato S. Abe, Shigeto Dobata, Ryota Sato, Ryusuke Fujisawa
Software Mentions: 4
Published: about 9 years ago

10.1534/g3.118.200516

Using Next-Generation Sequencing Transcriptomics To Determine Markers of Post-traumatic Symptoms: Preliminary Findings from a Post-deployment Cohort of Soldiers
Cited by: 6
Author(s): Cathy Boscarino, Thomas Nalpathamkalam, Giovanna Pellecchia, Weili Li, Bhooma Thiruvahindrapuram, Daniele Merico
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.118.200560

Mushroom Body Specific Transcriptome Analysis Reveals Dynamic Regulation of Learning and Memory Genes After Acquisition of Long-Term Courtship Memory in <i>Drosophila</i>
Cited by: 28
Author(s): Spencer G. Jones, Kevin C.J. Nixon, Melissa C. Chubak, Jamie M. Kramer
Software Mentions: 4
Published: almost 8 years ago

10.1530/REP-20-0231

Single cell transcriptome research in human placenta
Cited by: 38
Author(s): Hui Li, Qizhao Huang, Yu Liu, Lana X. Garmire
Software Mentions: 4
Published: over 5 years ago

10.3390/pathogens10030309

Impact of Annual Albendazole versus Four-Monthly Test-and-Treat Approach of Intestinal Parasites on Children Growth—A Longitudinal Four-Arm Randomized Parallel Trial during Two Years of a Community Follow-Up in Bengo, Angola
Cited by: 2
Author(s): Carolina Gasparinho, Aguinaldo Kanjungo, Félix Zage, Isabel Clemente, Ana Santos-Reis, Miguel Brito, José Carlos Sousa-Figueiredo, Filomeno Fortes, Luzia Gonçalves
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.2575

Monte Carlo simulation of OLS and linear mixed model inference of phenotypic effects on gene expression
Cited by: 1
Author(s): Jeffrey A. Walker
Software Mentions: 4
Published: almost 10 years ago

10.21203/rs.3.rs-539712/v1

Plasma Proteomics of COVID-19 Associated Cardiovascular Complications: Implications for Pathophysiology and Therapeutics
Cited by: 2
Author(s): Jason D. Roh, Robert Kitchen, James S. Guseh, Jenna McNeill, Malika Aïd, Amanda J. Martinot, Andy Yu, Colin Platt, James Rhee, Brittany Weber, Lena Trager, Margaret H. Hastings, Sarah Ducat, Peng Xia, Claire Castro, Bjarni Atlason, Timothy W. Churchill, Marcelo Di Carli, Patrick T. Ellinor, Dan H. Barouch, Jennifer E. Ho, Anthony Rosenzweig
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pmed.1003336

Antibiotic prescribing for lower UTI in elderly patients in primary care and risk of bloodstream infection: A cohort study using electronic health records in England
Cited by: 16
Author(s): Laura Shallcross, Patrick Rockenschaub, Ruth Blackburn, Irwin Nazareth, Nick Freemantle, Andrew Hayward
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2018.01209

Nuclear Speckle RNA Binding Proteins Remodel Alternative Splicing and the Non-coding Arabidopsis Transcriptome to Regulate a Cross-Talk Between Auxin and Immune Responses
Cited by: 39
Author(s): Jérémie Bazin, Natali Romero, Richard Rigo, Céline Charon, Thomas Blein, Federico Ariel, Martín Crespi
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12931-020-01544-4

Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0
Cited by: 6
Author(s): Espen E. Groth, Melanie Weber, Thomas Bahmer, Frauke Pedersen, Anne Kirsten, Daniela Börnigen, Klaus F. Rabe, Henrik Watz, Ole Ammerpohl, Torsten Goldmann
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2019.01098

Identification of Candidate Adaxial–Abaxial-Related Genes Regulating Petal Expansion During Flower Opening in Rosa chinensis “Old Blush”
Cited by: 10
Author(s): Yu Han, Yong Xue, Jiayao Yu, Tangren Cheng, Jia Wang, Weiru Yang, Huitang Pan, Qixiang Zhang
Software Mentions: 4
Published: almost 7 years ago

10.3389/fcell.2020.584604

Comparative Transcriptome Analysis of the Regenerating Zebrafish Telencephalon Unravels a Resource With Key Pathways During Two Early Stages and Activation of Wnt/β-Catenin Signaling at the Early Wound Healing Stage
Cited by: 16
Author(s): Yeliz Demırcı, Gokhan Cucun, Yusuf Kaan Poyraz, Suhaib Mohammed, Guillaume Heger, Irene Papatheodorou, Günes Özhan
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0228849

Prevalence and correlates of anal intercourse among female sex workers in eSwatini
Cited by: 3
Author(s): Branwen Nia Owen, Mathieu M-Giroux, Sindy Matse, Zandile Mnisi, Stefan Baral, Sosthenes Ketende, Rebecca F. Baggaley, Marie Claude Boily
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms22041811

Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions in Mitochondrial Genomes
Cited by: 15
Author(s): Liina Kinkar, Robin B. Gasser, Bonnie L. Webster, David Rollinson, D. Timothy J. Littlewood, Bill C.H. Chang, Andreas J. Stroehlein, Pasi K. Korhonen, Neil D. Young
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.587185

Comprehensive Identification and Expression Profiling of Circular RNAs During Nodule Development in Phaseolus vulgaris
Cited by: 9
Author(s): Zhihua Wu, Wen Huang, Erdai Qin, Shuo Liu, Huan Liu, Aleel K. Grennan, Hong Liu, Rui Qin
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2020.00180

Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach
Cited by: 32
Author(s): Jiali Yu, Anna O. Conrad, Véronique Decroocq, Tetyana Zhebentyayeva, Daniel E. Williams, Dennis Bennett, Guillaume Roch, Jean Marc Audergon, Christopher Dardick, Zongrang Liu, Albert G. Abbott, Margaret Staton
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0243422

Socioeconomic and behavioral determinants of cardiovascular diseases among older adults in Belgium and France: A longitudinal analysis from the SHARE study
Cited by: 6
Author(s): Hamid Yimam Hassen, Hilde Bastiaens, Kathleen Van Royen, Steven Abrams
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.01080

The Soil Microbiome of GLORIA Mountain Summits in the Swiss Alps
Cited by: 58
Author(s): Magdalene Adamczyk, Frank Hagedorn, Sonja Wipf, Johanna Donhauser, Pascal Vittoz, Christian Rixen, Aline Frossard, Jean‐Paul Theurillat, Beat Frey
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0071145

Optic Neuritis Is Associated with Inner Nuclear Layer Thickening and Microcystic Macular Edema Independently of Multiple Sclerosis
Cited by: 100
Author(s): Falko Kaufhold, Hanna Zimmermann, Eric Schneider, Klemens Ruprecht, Friedemann Paul, Timm Oberwahrenbrock, Alexander U. Brandt
Software Mentions: 4
Published: almost 13 years ago

10.1007/s00438-020-01735-0

Major latex protein-like encoding genes contribute to Rhizoctonia solani defense responses in sugar beet
Cited by: 16
Author(s): Louise Holmquist, Fredrik Dölfors, Johan Fogelqvist, Jonathan Cohn, Thomas Kraft, Christina Dixelius
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani11071885

Post-Thaw Sperm Quality and Functionality in the Autochthonous Pig Breed Gochu Asturcelta
Cited by: 8
Author(s): J. N. Caamaño, Carolina Tamargo, Inmaculada Parrilla, Felipe Martínez‐Pastor, Lorena Padilla, Amer Salman, Carmen Fueyo, A Víctor Fernández, María José Merino, Tania Iglesias, C.O. Hidalgo
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2018.01864

Revisiting the Soybean GmNAC Superfamily
Cited by: 37
Author(s): Bruno Paes de Melo, Otto Teixeira Fraga, José Cleydson Ferreira da Silva, Dalton O Ferreira, Otávio J. B. Brustolini, Paola A. Carpinetti, João Paulo Machado, Pedro A. B. Reis, Elizabeth P. B. Fontes
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2020.602731

CircRNA hsa_circ_0008500 Acts as a miR-1301-3p Sponge to Promote Osteoblast Mineralization by Upregulating PADI4
Cited by: 11
Author(s): Qiaoli Zhai, Yi Zhao, Linping Wang, Yan Dai, Peiqing Zhao, Xinxin Xiang, Kui Liu, Wei Du, Wenxiu Tian, Baoye Yang, Tao Li, Lianqing Wang
Software Mentions: 4
Published: over 5 years ago

10.3390/molecules21111431

Comparative Transcriptomic Analysis of Grape Berry in Response to Root Restriction during Developmental Stages
Cited by: 20
Author(s): Lu Feng, Qiong Lin, Di Wu, Shiping Wang, Dengliang Wang, Chongde Sun
Software Mentions: 4
Published: almost 10 years ago

10.3389/fcell.2020.00808

Integrated Microarray and RNAseq Transcriptomic Analysis of Retinal Pigment Epithelium/Choroid in Age-Related Macular Degeneration
Cited by: 10
Author(s): Dhanach Dhirachaikulpanich, Xin Li, Louise F. Porter, Luminita Paraoan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphys.2021.616055

Phenotypic Changes in T Cell and Macrophage Subtypes in Perivascular Adipose Tissues Precede High-Fat Diet-Induced Hypertension
Cited by: 6
Author(s): Ramya Kumar, Yongliang Yang, Andres Contreras, Hannah Garver, Sudin Bhattacharya, Gregory D. Fink, Cheryl E. Rockwell, Stephanie W. Watts
Software Mentions: 4
Published: over 5 years ago

10.1111/mec.15216

Sex‐specific changes in the aphid DNA methylation landscape
Cited by: 32
Author(s): Thomas C. Mathers, Sam T. Mugford, Lawrence Percival‐Alwyn, Yazhou Chen, Gemy Kaithakottil, David Swarbreck, Saskia A. Hogenhout, Cock van Oosterhout
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12974-016-0720-6

MOG-IgG in NMO and related disorders: a multicenter study of 50 patients. Part 4: Afferent visual system damage after optic neuritis in MOG-IgG-seropositive versus AQP4-IgG-seropositive patients
Cited by: 197
Author(s): Florence Pache, Hanna Zimmermann, Janine Mikolajczak, Stefan Schumacher, Anna Lacheta, Frederike Cosima Oertel, Judith Bellmann‐Strobl, Sven Jarius, Brigitte Wildemann, Markus Reindl, Amy Waldman, Kerstin Soelberg, Nasrin Asgari, Marius Ringelstein, Orhan Aktaş, Nikolai Gross, Mathias Buttmann, Thomas Ach, Klemens Ruprecht, Friedemann Paul, Alexander U. Brandt
Software Mentions: 4
Published: almost 10 years ago

10.3389/fphys.2020.588313

High Throughput Sequencing of MicroRNA in Rainbow Trout Plasma, Mucus, and Surrounding Water Following Acute Stress
Cited by: 21
Author(s): Heather Ikert, Michael Lynch, Andrew C. Doxey, John P. Giesy, Mark R. Servos, Barbara A. Katzenback, Paul M. Craig
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-29506-3

Analysis of public RNA-sequencing data reveals biological consequences of genetic heterogeneity in cell line populations
Cited by: 18
Author(s): Erik Fasterius, Cristina Al‐Khalili Szigyarto
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.53237

Rapid sex-specific adaptation to high temperature in Drosophila
Cited by: 20
Author(s): Sheng‐Kai Hsu, Ana Marija Jakšić, Viola Nolte, Manolis Lirakis, Robert Kofler, Neda Barghi, Elisabetta Versace, Christian Schlötterer
Software Mentions: 4
Published: over 6 years ago

10.1186/s12862-017-0993-0

Phylogenetic conservatism in skulls and evolutionary lability in limbs – morphological evolution across an ancient frog radiation is shaped by diet, locomotion and burrowing
Cited by: 40
Author(s): Marta Vidal‐García, J. Scott Keogh
Software Mentions: 4
Published: about 9 years ago

10.3389/fmicb.2017.02033

The Low-Diversity Fecal Microbiota of the Critically Endangered Kākāpō Is Robust to Anthropogenic Dietary and Geographic Influences
Cited by: 14
Author(s): Elena K. Perry, Andrew Digby, Michael W. Taylor
Software Mentions: 4
Published: almost 9 years ago

10.3389/fendo.2019.00840

Role of MicroRNAs in the Regulation of Subcutaneous White Adipose Tissue in Individuals With Obesity and Without Type 2 Diabetes
Cited by: 17
Author(s): Olga Brovkina, А Г Никитин, Д. С. Ходырев, Ekaterina A. Shestakova, Igor A. Sklyanik, Anna S. Panevina, Iurii Stafeev, Mikhail Menshikov, Anastasiya A. Kobelyatskaya, Anatoliy Yurasov, V. S. Fedenko, Yu I Yashkov, М. В. Шестакова
Software Mentions: 4
Published: over 6 years ago

10.3389/fendo.2021.665666

Comprehensive Analysis of the Expression and Prognostic Value of SPINT1/2 in Breast Carcinoma
Cited by: 3
Author(s): Qi Wu, Guang Yin, Jing Luo, Yingzi Zhang, Tiantian Ai, Jiao Tian, Yudi Jin, Jinwei Lei, Shengchun Liu
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.2402

Evolutionary patterns of range size, abundance and species richness in Amazonian angiosperm trees
Cited by: 29
Author(s): Kyle G. Dexter, Jérôme Chave
Software Mentions: 4
Published: almost 10 years ago

10.3389/fonc.2021.652063

Machine Learning Applicability for Classification of PAD/VCD Chemotherapy Response Using 53 Multiple Myeloma RNA Sequencing Profiles
Cited by: 15
Author(s): Nicolas Borisov, Anna Sergeeva, Maria Suntsova, Mikhail Raevskiy, Нуршат Гайфуллин, Л. П. Менделеева, Alexander Gudkov, Maria Nareiko, Andrew Garazha, Victor Tkachev, Xinmin Li, Maxim Sorokin, В. Л. Сурин, Anton Buzdin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-50271-4

Fractional Deletion of Compound Kushen Injection Indicates Cytokine Signaling Pathways are Critical for its Perturbation of the Cell Cycle
Cited by: 9
Author(s): Thazin Nwe Aung, Saeed Nourmohammadi, Zhibo Qu, Yuka Harata-Lee, Jingang Cui, Hao Shen, Andrea J. Yool, Tara L. Pukala, Hongling Du, R. Daniel Kortschak, Wenxin Wei, David L. Adelson
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.8574

The effects of phylogeny, body size, and locomotor behavior on the three-dimensional shape of the pelvis in extant carnivorans
Cited by: 8
Author(s): Kristi Lewton, Ryan Brankovic, William A. Byrd, Daniela Cruz, Jocelyn Morales, Sung Sik Shin
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.205

Size and shape in the evolution of ant worker morphology
Cited by: 21
Author(s): Márcio R. Pie, Marcel Kruchelski Tschá
Software Mentions: 4
Published: over 12 years ago

10.3389/fgene.2019.01036

Profiling Transcriptional Regulation and Functional Roles of Schistosoma mansoni c-Jun N-Terminal Kinase
Cited by: 5
Author(s): Sandra Grossi Gava, Naiara Clemente Tavares, Franco H. Falcone, Guilherme Oliveira, Marina Moraes Mourão
Software Mentions: 4
Published: almost 7 years ago

10.3389/fgene.2021.664260

Large-Scale Multiplexing Permits Full-Length Transcriptome Annotation of 32 Bovine Tissues From a Single Nanopore Flow Cell
Cited by: 11
Author(s): Michelle M. Halstead, Alma Islas–Trejo, Daniel Estanislao Goszczynski, Juan F. Medrano, Huaijun Zhou, Pablo J. Ross
Software Mentions: 4
Published: about 5 years ago

10.3389/fgene.2021.627907

Enrichment of Circular RNA Expression Deregulation at the Transition to Recurrent Spontaneous Seizures in Experimental Temporal Lobe Epilepsy
Cited by: 13
Author(s): Andreia Gomes‐Duarte, Sebastian Bauer, Morten T. Venø, Braxton A. Norwood, David C. Henshall, Jørgen Kjems, Felix Rosenow, Vamshidhar R. Vangoor, R. Jeroen Pasterkamp
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0097508

Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish
Cited by: 36
Author(s): Andrew Jackson, Brice X. Semmens, Yvonne Sadovy de Mitcheson, Richard S. Nemeth, Scott A. Heppell, Phillippe G. Bush, Alfonso Aguilar‐Perera, John A. B. Claydon, Marta C. Calosso, Kathleen Sullivan Sealey, Michelle T. Schärer, Giacomo Bernardi
Software Mentions: 4
Published: about 12 years ago

10.1038/s41598-020-61273-y

Comprehensive transcriptome profiling of Taiwanese colorectal cancer implicates an ethnic basis for pathogenesis
Cited by: 8
Author(s): Shao‐Min Wu, Wen‐Sy Tsai, Sum-Fu Chiang, Yi-Hsuan Lai, Chung‐Pei Ma, Jianhua Wang, Jeng-Feng Lin, Pei-Shan Lu, Chao-Ping Yang, Bertrand Chin‐Ming Tan, Hsuan Liu
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2018.00482

Transcriptomic Alterations in Lung Adenocarcinoma Unveil New Mechanisms Targeted by the TBX2 Subfamily of Tumor Suppressor Genes
Cited by: 10
Author(s): Athar Khalil, Batoul Dekmak, Fouad Boulos, Jake Kantrowitz, Avrum Spira, Junya Fujimoto, Humam Kadara, Nehmé El-Hachem, Georges Nemer
Software Mentions: 4
Published: almost 8 years ago

10.3389/fonc.2020.574853

CXCL12 and IL7R as Novel Therapeutic Targets for Liver Hepatocellular Carcinoma Are Correlated With Somatic Mutations and the Tumor Immunological Microenvironment
Cited by: 5
Author(s): Kui He, Shuai Liu, Yong Xia, Jianguo Xu, Fei Liu, Jing Xiao, Yong Li, Qi Ding, Ligong Lu, Guoan Xiang, Meixiao Zhan
Software Mentions: 4
Published: over 5 years ago

10.1016/j.ajhg.2015.11.018

Autosomal-Dominant Corneal Endothelial Dystrophies CHED1 and PPCD1 Are Allelic Disorders Caused by Non-coding Mutations in the Promoter of OVOL2
Cited by: 65
Author(s): Alice E. Davidson, Petra Lišková, Cerys J. Evans, Ľubica Ďuďáková, Lenka Nosková, Nikolas Pontikos, Hana Hartmannová, Kateřina Hodaňová, Viktor Stránecký, Zbyněk Kozmík, Hannah J. Levis, Nwamaka Juliana Idigo, Noriaki Sasai, Geoffrey J. Maher, James Bellingham, Neyme Veli, Neil D. Ebenezer, Michael E. Cheetham, Julie T. Daniels, Caroline Thaung, Kateřina Jirsová, Vincent Plagnol, Martin Filipec, Stanislav Kmoch, Stephen Tuft, Alison J. Hardcastle
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2021.625400

Rumen Epithelial Communities Share a Core Bacterial Microbiota: A Meta-Analysis of 16S rRNA Gene Illumina MiSeq Sequencing Datasets
Cited by: 22
Author(s): Chiron J Anderson, Lucas R Koester, Stephan Schmitz‐Esser
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2019.01361

Read Mapping and Transcript Assembly: A Scalable and High-Throughput Workflow for the Processing and Analysis of Ribonucleic Acid Sequencing Data
Cited by: 16
Author(s): Sateesh Peri, Susan C. Roberts, Isabella R Kreko, Lauren B McHan, Alexandra Naron, Archana Ram, Rebecca L. Murphy, Eric Lyons, Brian D. Gregory, Upendra Kumar Devisetty, Andrew D. L. Nelson
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.686

Different modes of evolution in males and females generate dichromatism in fairy-wrens (Maluridae)
Cited by: 43
Author(s): Allison E. Johnson, Joseph Price, Stephen Pruett‐Jones
Software Mentions: 4
Published: about 13 years ago

10.3389/fgene.2021.662468

Hypoxia-Induced miR-148a Downregulation Contributes to Poor Survival in Colorectal Cancer
Cited by: 15
Author(s): Stepan Nersisyan, A. V. Galatenko, Milena Chekova, Alexander G. Tonevitsky
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.3504

Elevational diversity gradients of Tibetan loaches: The relative roles of ecological and evolutionary processes
Cited by: 8
Author(s): Chenguang Feng, Yongjie Wu, Fei Tian, Chao Tong, Yongtao Tang, Renyi Zhang, Guogang Li, Kai Zhao
Software Mentions: 4
Published: almost 9 years ago

10.3389/fgene.2021.695699

Integrated Analysis of mRNA- and miRNA-Seq in the Ovary of Rare Minnow Gobiocypris rarus in Response to 17α-Methyltestosterone
Cited by: 3
Author(s): Shaozhen Liu, Qiong Yang, Yue Chen, Qing Liu, Weiwei Wang, Jing Song, Yao Zheng, Wenzhong Liu
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-66556-y

WNT and inflammatory signaling distinguish human Fallopian tube epithelial cell populations
Cited by: 9
Author(s): Ian M. Rose, Mallikarjun Bidarimath, Alex Webster, Andrew K. Godwin, Andrea Flesken‐Nikitin, Alexander Yu. Nikitin
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-68373-9

Increased predominance of the matured ventricular subtype in embryonic stem cell-derived cardiomyocytes in vivo
Cited by: 22
Author(s): Hajime Ichimura, Shin Kadota, Toshihide Kashihara, Mitsuhiko Yamada, Kyoko Ito, Hideki Kobayashi, Yuki Tanaka, Naoko Shiba, Shinichiro Chuma, Shugo Tohyama, Takashi Seto, Kenji Okada, Koichiro Kuwahara, Yuji Shiba
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.6468

Leaf‐footed bugs possess multiple hidden contrasting color signals, but only one is associated with increased body size
Cited by: 5
Author(s): Zachary Emberts, Charles H. Miller, Chelsea Skojec, Rachel M. Shepherd, Colette M. St. Mary
Software Mentions: 4
Published: about 6 years ago

10.1186/s12859-019-2889-z

Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performance
Cited by: 12
Author(s): Wiktor Kuśmirek, Agnieszka Szmurło, Marek Wiewiórka, Robert Nowak, Tomasz Gambin
Software Mentions: 4
Published: about 7 years ago

10.3389/fonc.2021.705627

Decoupling Lineage-Associated Genes in Acute Myeloid Leukemia Reveals Inflammatory and Metabolic Signatures Associated With Outcomes
Cited by: 4
Author(s): Hussein A. Abbas, Vakul Mohanty, Ruiping Wang, Yu-Ting Huang, Shaoheng Liang, Feng Wang, Jianhua Zhang, Yihua Qiu, Chenyue W. Hu, Amina A. Qutub, Monique Dail, Christopher R. Bolen, Naval Daver, Marina Konopleva, Andrew Futreal, Ken Chen, Linghua Wang, Steven M. Kornblau
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-70540-x

Identification of C3 as a therapeutic target for diabetic nephropathy by bioinformatics analysis
Cited by: 16
Author(s): Shumei Tang, Xiufen Wang, Tianci Deng, Huipeng Ge, Xiangcheng Xiao
Software Mentions: 4
Published: almost 6 years ago

10.3389/fonc.2021.569295

Resveratrol Mediates the Apoptosis of Triple Negative Breast Cancer Cells by Reducing POLD1 Expression
Cited by: 18
Author(s): Zheng Liang, Yu Wan, Dandan Zhu, Mengxin Wang, Hong-Mian Jiang, Deng-Shing Huang, Lifeng Luo, Mao-jian Chen, Weiping Yang, Hong-Mian Li, Changyuan Wei
Software Mentions: 4
Published: over 5 years ago

10.3389/fmed.2021.730018

Optimal Positive End Expiratory Pressure Levels in Ventilated Patients Without Acute Respiratory Distress Syndrome: A Bayesian Network Meta-Analysis and Systematic Review of Randomized Controlled Trials
Cited by: 0
Author(s): Jing Zhou, Zhihua Lin, Xiu-Mei Deng, Baiyun Liu, Yu Zhang, Yongxin Zheng, Hairong Zheng, Yingzhi Wang, Yan H. Lai, Weixiang Huang, Xiaoqing Liu, Weiqun He, Yang Xu, Yimin Li, Yongbo Huang, Ling Sang
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-65571-3

Assessing distribution shifts and ecophysiological characteristics of the only Antarctic winged midge under climate change scenarios
Cited by: 22
Author(s): Tamara Contador, Melisa Gañán, Gustavo Bizama, Guillermo Fuentes-Jaque, Luis Morales, Javier Rendoll-Cárcamo, Felipe Lorenz Simões, James H. Kennedy, Ricardo Rozzi, Peter Convey
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-020-76048-8

Characterization of somatic mutation-associated microenvironment signatures in acute myeloid leukemia patients based on TCGA analysis
Cited by: 4
Author(s): Jun Wang, Feng‐Ting Dao, Lu Yang, Ya‐Zhen Qin
Software Mentions: 4
Published: over 5 years ago

10.3389/fnins.2016.00390

Bidirectional Expression of Metabolic, Structural, and Immune Pathways in Early Myopia and Hyperopia
Cited by: 31
Author(s): Nina Riddell, Loretta Giummarra, Nathan E. Hall, Sheila G. Crewther
Software Mentions: 4
Published: almost 10 years ago

10.3389/fimmu.2021.685237

Key Macrophage Responses to Infection With Mycobacterium tuberculosis Are Co-Regulated by microRNAs and DNA Methylation
Cited by: 11
Author(s): Monika Looney, Rachel Lorenc, Marc K. Halushka, Petros C. Karakousis
Software Mentions: 4
Published: about 5 years ago

10.3389/fpubh.2021.729559

Efficacy of COVID-19 Treatments: A Bayesian Network Meta-Analysis of Randomized Controlled Trials
Cited by: 25
Author(s): Chenyang Zhang, Huaqing Jin, Yi Feng Wen, Guosheng Yin
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.10490

The ecomorphology of the shell of extant turtles and its applications for fossil turtles
Cited by: 7
Author(s): Laura Dziomber, Walter G. Joyce, Christian Foth
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.27488

MAGE-A inhibit apoptosis and promote proliferation in multiple myeloma through regulation of BIM and p21Cip1
Cited by: 10
Author(s): Anna Mei, Kaity Tung, Jessie Han, Deepak Perumal, Alessandro Laganà, Jonathan J. Keats, Daniel Auclair, Ajai Chari, Sundar Jagannath, Samir Parekh, Hearn Jay Cho
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-70641-7

Surgical procedures in the pilonidal sinus disease: a systematic review and network meta-analysis
Cited by: 32
Author(s): Siwei Bi, Kaibo Sun, Shanshan Chen, Jun Gu
Software Mentions: 4
Published: almost 6 years ago