10.1371/journal.pcbi.1006451

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Cited by: 9
Author(s): Iksoo Huh, Isabel Mendizabal, Taesung Park, Soojin V. Yi
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: almost 6 years ago

10.3389/fpls.2021.643137

Nepenthes × ventrata Transcriptome Profiling Reveals a Similarity Between the Evolutionary Origins of Carnivorous Traps and Floral Organs
Cited by: 4
Author(s): А. В. Щенникова, Alexey V. Beletsky, M. A. Filyushin, М. А. Слугина, Eugeny V. Gruzdev, Andrey V. Mardanov, Е. З. Кочиева, Н. В. Равин
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: almost 8 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0088950

Widespread FRA1-Dependent Control of Mesenchymal Transdifferentiation Programs in Colorectal Cancer Cells
Cited by: 68
Author(s): Jeannine Diesch, Elaine Sanij, Omer Gilan, Christopher G. Love, Hoanh Tran, Nicholas I. Fleming, Jason Ellul, Amalia Marcia, Izhak Haviv, Richard B. Pearson, Eugene Tulchinsky, John M. Mariadason, Oliver M. Sieber, Ross D. Hannan, Amardeep S. Dhillon
Software Mentions: 4
Published: over 12 years ago

10.3390/genes10090719

WGCNA Analysis of Salt-Responsive Core Transcriptome Identifies Novel Hub Genes in Rice
Cited by: 50
Author(s): Mei-Ling Zhu, Hongjun Xie, Xiangjin Wei, Komivi Dossa, Yaying Yu, Suozhen Hui, Guohua Tang, Xiaoshan Zeng, Ye Yu, Jianlong Wang
Software Mentions: 4
Published: almost 7 years ago

10.3390/v11111041

Viruses in the Invasive Hornet Vespa velutina
Cited by: 36
Author(s): Anne Dalmon, Philippe Gayral, Damien Decante, Christophe Klopp, Diane Bigot, Maxime Thomasson, Elisabeth A. Herniou, Cédric Alaux, Yves Le Conte
Software Mentions: 4
Published: over 6 years ago

10.3389/fped.2020.599638

Digital Simulation Improves, Maintains, and Helps Transfer Health-Care Providers' Neonatal Resuscitation Knowledge
Cited by: 6
Author(s): Simran K. Ghoman, Maria Cutumisu, Georg M. Schmölzer
Software Mentions: 4
Published: over 5 years ago

10.1038/s41416-019-0468-8

Risk of cardiovascular events in men treated for prostate cancer compared with prostate cancer-free men
Cited by: 8
Author(s): Ida Rask Moustsen-Helms, Signe Benzon Larsen, Anne Katrine Duun‐Henriksen, Anne Tjønneland, Susanne K. Kjær, Klaus Brasso, Christoffer Johansen, Susanne Oksbjerg Dalton
Software Mentions: 4
Published: over 7 years ago

10.3390/cancers13081979

Risk of Pharmacological or Hospital Treatment for Depression in Patients with Colorectal Cancer–Associations with Pre-Cancer Lifestyle, Comorbidity and Clinical Factors
Cited by: 2
Author(s): Trille Kristina Kjær, Ida Rask Moustsen-Helms, Vanna Albieri, Signe Benzon Larsen, Thea Helene Degett, Anne Tjønneland, Christoffer Johansen, Susanne K. Kjær, Ismail Gögenür, Susanne Oksbjerg Dalton
Software Mentions: 4
Published: over 5 years ago

10.1038/s41398-017-0058-6

Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons
Cited by: 43
Author(s): Ping Wang, Dejian Zhao, Herbert M. Lachman, Deyou Zheng
Software Mentions: 4
Published: over 8 years ago

10.1186/s13072-018-0225-x

Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs
Cited by: 31
Author(s): Jenny van Dongen, Erik A. Ehli, Ritsert C. Jansen, Catharina E. M. van Beijsterveldt, Gonneke Willemsen, Jouke Jan Hottenga, Noah A. Kallsen, Stephen Peyton, Charles E. Breeze, C. Kluft, Bastiaan T. Heijmans, Meike Bartels, Gareth E. Davies, Dorret I. Boomsma
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13148-020-00966-7

DNA methylation signatures to predict the cervicovaginal microbiome status
Cited by: 3
Author(s): Nuno R. Nené, James E. Barrett, Allison Jones, Iona Evans, Daniel Reisel, John F. Timms, Tobias Paprotka, Andreas Leimbach, D. Franchi, Nicoletta Colombo, Line Bjørge, Michal Zikán, David Cibula, Martin Widschwendter
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-020-3443-8

MethylNet: an automated and modular deep learning approach for DNA methylation analysis
Cited by: 61
Author(s): Joshua Levy, Alexander J. Titus, Curtis L. Petersen, Youdinghuan Chen, Lucas A. Salas, Brock C. Christensen
Software Mentions: 4
Published: over 6 years ago

10.1155/2021/6628391

Identification of Prognostic Risk Model Based on DNA Methylation-Driven Genes in Esophageal Adenocarcinoma
Cited by: 2
Author(s): Yuhua Chen, Jinjie Wang, Hao Zhou, Zhanghao Huang, Qian Li, Wei Shi
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.6293

Isolation of wheat bran-colonizing and metabolizing species from the human fecal microbiota
Cited by: 9
Author(s): Kim De Paepe, Joran Verspreet, Mohammad Naser Rezaei, Silvia Hidalgo Martinez, Filip J. R. Meysman, Davy Van de Walle, Koen Dewettinck, Jeroen Raes, Tom Van de Wiele
Software Mentions: 4
Published: over 7 years ago

10.3389/fcimb.2020.00173

Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities
Cited by: 7
Author(s): Nicole Acosta, Barbara Waddell, Alya Heirali, Ranjani Somayaji, Michael G. Surette, Matthew L. Workentine, Harvey Rabin, Michael D. Parkins
Software Mentions: 4
Published: over 6 years ago

10.3389/fendo.2019.00735

Reduced Expression of PLCXD3 Associates With Disruption of Glucose Sensing and Insulin Signaling in Pancreatic β-Cells
Cited by: 18
Author(s): Hayat Aljaibeji, Debasmita Mukhopadhyay, Abdul Khader Mohammed, Sarah Dhaiban, Mahmood Yaseen Hachim, Noha Mousaad Elemam, Nabil Sulaiman, Albert Salehi, Jalal Taneera
Software Mentions: 4
Published: over 6 years ago

10.3390/genes12030332

Application of Genomics to Understand Salt Tolerance in Lentil
Cited by: 7
Author(s): D. R. R. P. Dissanayake, Noel O. I. Cogan, K. F. Smith, Sukhjiwan Kaur
Software Mentions: 4
Published: over 5 years ago

10.3389/fncel.2019.00370

Interplay of LIS1 and MeCP2: Interactions and Implications With the Neurodevelopmental Disorders Lissencephaly and Rett Syndrome
Cited by: 10
Author(s): Liraz Keidar, Gabi Gerlitz, Aditya Kshirsagar, Michael Tsoory, Tsviya Olender, Xing Wang, Ying Yang, Yu‐Sheng Chen, Yun‐Gui Yang, Irina Voineagu, Orly Reiner
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijerph18136934

A Latent Class Analysis of Health Lifestyles in Relation to Suicidality among Adolescents in Mauritius
Cited by: 6
Author(s): Fanny Hoogstoel, Sékou Samadoulougou, Vincent Lorant, Fati Kirakoya‐Samadoulougou
Software Mentions: 4
Published: about 5 years ago

10.3389/fncel.2021.629279

Validation of Induced Microglia-Like Cells (iMG Cells) for Future Studies of Brain Diseases
Cited by: 24
Author(s): Atoshi Banerjee, Yujie Lu, Kenny Do, Travis Mize, Xiaogang Wu, Xiangning Chen, Jingchun Chen
Software Mentions: 4
Published: over 5 years ago

10.1093/bib/bbz020

New approaches for metagenome assembly with short reads
Cited by: 113
Author(s): Martin Ayling, Matthew D. Clark, Richard M. Leggett
Software Mentions: 4
Published: over 7 years ago

10.7717/peerj.11777

Inter- and intraspecific variation in the <i>Artibeus</i> species complex demonstrates size and shape partitioning among species
Cited by: 10
Author(s): Brandon P Hedrick
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8744

Dental characters used in phylogenetic analyses of mammals show higher rates of evolution, but not reduced independence
Cited by: 8
Author(s): Neil Brocklehurst, Gemma Louise Benevento
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0163348

On the Morphological Description of Tracheal and Esophageal Displacement and Its Phylogenetic Distribution in Avialae
Cited by: 5
Author(s): Jeremy Klingler
Software Mentions: 4
Published: almost 10 years ago

10.1002/ece3.5652

The evolution of climate tolerance in conifer‐feeding aphids in relation to their host's climatic niche
Cited by: 8
Author(s): Pierre Arnal, Armelle Coeur d’Acier, Colin Favret, Gottfried Martin, Ge‐Xia Qiao, Emmanuelle Jousselin, Andrea S. Meseguer
Software Mentions: 4
Published: almost 7 years ago

10.3390/ijerph18168602

Using Latent Class Analysis to Identify Health Lifestyle Profiles and Their Association with Suicidality among Adolescents in Benin
Cited by: 2
Author(s): Fanny Hoogstoel, Lucresse Corine Fassinou, Sékou Samadoulougou, Céline Mahieu, Yves Coppieters, Fati Kirakoya‐Samadoulougou
Software Mentions: 4
Published: almost 5 years ago

10.1007/s10654-020-00712-6

Sedentary behaviour in relation to ovarian cancer risk: a systematic review and meta-analysis
Cited by: 13
Author(s): Veronika S. Biller, Michael F. Leitzmann, Anja M. Sedlmeier, Felix Berger, O. Ortmann, Carmen Jochem
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.8085

Adaptation, phylogeny, and covariance in milk macronutrient composition
Cited by: 0
Author(s): Gregory E. Blomquist
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.11997

A variable-rate quantitative trait evolution model using penalized-likelihood
Cited by: 12
Author(s): Liam J. Revell
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12920-018-0378-2

Identification of differential gene expression profile from peripheral blood cells of military pilots with hypertension by RNA sequencing analysis
Cited by: 10
Author(s): Xiaohu Zhao, Shaohua Yang, Yi-Shang Yan, Xin Zhang, Lin Zhang, Bo Jiao, Shuai Jiang, Zhi‐Bin Yu
Software Mentions: 4
Published: about 8 years ago

10.3389/fgene.2019.00306

Chromatin State-Based Analysis of Epigenetic H3K4me3 Marks of Arabidopsis in Response to Dark Stress
Cited by: 13
Author(s): Hengyu Yan, Yue Liu, Kang Zhang, Jakyoung Song, Wenying Xu, Zhen Su
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0137181

Biomechanical Diversity of Mating Structures among Harvestmen Species Is Consistent with a Spectrum of Precopulatory Strategies
Cited by: 23
Author(s): Mercedes Burns, Jeffrey W. Shultz
Software Mentions: 4
Published: almost 11 years ago

10.3389/fgene.2020.00650

Genome Regulation and Gene Interaction Networks Inferred From Muscle Transcriptome Underlying Feed Efficiency in Pigs
Cited by: 9
Author(s): Victor Adriano Okstoft Carmelo, Haja N. Kadarmideen
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2020.597459

Pearl Sac Gene Expression Profiles Associated With Pearl Attributes in the Silver-Lip Pearl Oyster, Pinctada maxima
Cited by: 9
Author(s): Carmel McDougall, Felipe Aguilera, Ali Shokoohmand, Patrick Moase, Bernard M. Degnan
Software Mentions: 4
Published: over 5 years ago

10.1186/s12967-021-02870-x

High copy number variations, particular transcription factors, and low immunity contribute to the stemness of prostate cancer cells
Cited by: 9
Author(s): Zao Dai, Ping Liu
Software Mentions: 4
Published: about 5 years ago

10.1186/2041-1480-5-42

Executing SADI services in Galaxy
Cited by: 7
Author(s): Mikel Egaña Aranguren, Alejandro Rodríguez Gonzàlez, Mark D. Wilkinson
Software Mentions: 4
Published: over 12 years ago

10.7717/peerj.2959

Evolutionary and functional implications of hypervariable loci within the skin virome
Cited by: 26
Author(s): Geoffrey D. Hannigan, Qi Zheng, Jacquelyn S. Meisel, Samuel S. Minot, Frederic D. Bushman, Elizabeth A. Grice
Software Mentions: 4
Published: over 9 years ago

10.1186/s41065-019-0100-1

A co-expression network for differentially expressed genes in bladder cancer and a risk score model for predicting survival
Cited by: 16
Author(s): Zihao Chen, Guojun Liu, Aslam Hossain, И. Г. Данилова, Mikhail A. Bolkov, Guoqing Liu, Irina A. Tuzankina, Wanlong Tan
Software Mentions: 4
Published: about 7 years ago

10.1172/jci.insight.145029

Nrf2 overexpression rescues the RPE in mouse models of retinitis pigmentosa
Cited by: 30
Author(s): David M. Wu, Xuke Ji, Maryna V. Ivanchenko, M. S. Chung, Mary E. Piper, Parimal Rana, Sean K. Wang, Y. Y. Xue, Emma R. West, Sophia R. Zhao, Hongbin Xu, Marcelo Cicconet, Wenjun Xiong, Constance L. Cepko
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.726923

Genome-Resolved Metagenomics of the Chicken Gut Microbiome
Cited by: 25
Author(s): Maia Segura-Wang, Nikolaus Grabner, Andreas Koestelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2018.01534

Jellyfish Life Stages Shape Associated Microbial Communities, While a Core Microbiome Is Maintained Across All
Cited by: 24
Author(s): Michael D. Lee, Joshua D. Kling, Rubén Araya, Janja Ceh
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2018.02094

Application of MootralTM Reduces Methane Production by Altering the Archaea Community in the Rumen Simulation Technique
Cited by: 27
Author(s): Melanie Eger, Michael Graz, Susanne Riede, Gerhard Breves
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.00322

Metatranscriptomics Reveals Antibiotic-Induced Resistance Gene Expression in the Murine Gut Microbiota
Cited by: 11
Author(s): Benjamin J. Korry, Damien J. Cabral, Peter Belenky
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01707

Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803
Cited by: 16
Author(s): Ulysse Guyet, Ngoc-An Nguyen, Hugo Doré, Julie Haguait, Justine Pittera, Maël Conan, Morgane Ratin, Erwan Corre, Gildas Le Corguillé, Loraine Brillet-Guéguen, Mark Hoebeke, Christophe Six, Claudia Steglich, Anne Siegel, Damien Eveillard, Frédéric Partensky, Laurence Garczarek
Software Mentions: 4
Published: about 6 years ago

10.1093/bioinformatics/bts458

MolBioLib: a C++11 framework for rapid development and deployment of bioinformatics tasks
Cited by: 9
Author(s): Toshiro K. Ohsumi, Mark Borowsky
Software Mentions: 4
Published: about 14 years ago

10.1111/jcmm.16553

Construction of a SUMOylation regulator‐based prognostic model in low‐grade glioma
Cited by: 3
Author(s): Xiaozhi Li, Yutong Meng
Software Mentions: 4
Published: about 5 years ago

10.1186/1297-9686-42-27

Genetic parameters for social effects on survival in cannibalistic layers: Combining survival analysis and a linear animal model
Cited by: 16
Author(s): E.D. Ellen, Vincent Ducrocq, B.J. Ducro, R.F. Veerkamp, P. Bijma
Software Mentions: 4
Published: about 16 years ago

10.3390/s140203001

Low-Cost 3D Systems: Suitable Tools for Plant Phenotyping
Cited by: 201
Author(s): Stefan Paulus, Jan Behmann, Anne-Katrin Mahlein, Lutz Plümer, Heiner Kuhlmann
Software Mentions: 4
Published: over 12 years ago

10.3389/fmicb.2021.639997

Identifying the Specific Root Microbiome of the Hyperaccumulator Noccaea brachypetala Growing in Non-metalliferous Soils
Cited by: 0
Author(s): Soledad Martos, John Danku, Laura Pérez‐Martín, Mercè Llugany, Catalina Cabot, Charlotte Poschenrieder
Software Mentions: 4
Published: about 5 years ago

10.1098/rsob.200253

The role of antioxidants in restoring MAPK 14 and a DNA damage marker level following autophagy suppression
Cited by: 3
Author(s): Abdalla Elbialy
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.8917

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma
Cited by: 131
Author(s): Ikhlak Ahmed, Thasni Karedath, Simeon Andrews, Iman K. Al-Azwani, Yasmin Ali Mohamoud, Denis Querleu, Arash Rafii, Joel A. Malek
Software Mentions: 4
Published: over 10 years ago

10.7150/jca.41983

Predictive value of hypoxia, metabolism and immune factors for prognosis in hepatocellular carcinoma: a retrospective analysis and multicenter validation study
Cited by: 4
Author(s): Peng Lin, Dong‐Yue Wen, Gang Chen, Yi‐Wu Dang, Yun He, Hong Yang
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2019.00347

Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches
Cited by: 49
Author(s): Logan M. Peoples, Eleanna Grammatopoulou, Michelle Pombrol, Xu Xin, Oladayo Osuntokun, Jessica M. Blanton, Eric E. Allen, Clifton C. Nunnally, Jeffrey C. Drazen, Daniel J. Mayor, Douglas H. Bartlett
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-40883-1

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Cited by: 13
Author(s): Jonna Teikari, Rafael Vicentini Popin, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1007978

Fast and flexible linear mixed models for genome-wide genetics
Cited by: 46
Author(s): Daniel E. Runcie, Lorin Crawford
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2016.02125

Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System
Cited by: 36
Author(s): Aaron A. Best, Amanda Porter, Susan M. Fraley, Gregory S. Fraley
Software Mentions: 4
Published: over 9 years ago

10.1038/s41419-021-03832-3

Comparison of the major cell populations among osteoarthritis, Kashin–Beck disease and healthy chondrocytes by single-cell RNA-seq analysis
Cited by: 35
Author(s): Wang Xi, Yujie Ning, Pan Zhang, Blandine Poulet, Ruitian Huang, Yi Gong, Minhan Hu, Cheng Li, Rong Zhou, Mikko J. Lammi, Xiong Guo
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.03183

Iron Regulation in Clostridioides difficile
Cited by: 42
Author(s): Mareike Berges, Annika-Marisa Michel, Christian Lassek, Aaron M. Nuss, Michael Beckstette, Petra Dersch, Katharina Riedel, Susanne Sievers, Dörte Becher, Andreas Otto, Sandra Maaß, Manfred Rohde, Denitsa Eckweiler, José Manuel Borrero‐de Acuña, Martina Jahn, Meina Neumann‐Schaal, Dieter Jahn
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2019.00861

Sample Processing Methods Impacts on Rumen Microbiome
Cited by: 10
Author(s): Gonzalo Martínez Fernández, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.15068

Genome-scale analysis identifies GJB2 and ERO1LB as prognosis markers in patients with pancreatic cancer
Cited by: 39
Author(s): Tao Zhu, Yuanfeng Gao, Yixin Chen, Zhibin Wang, Ji‐Ye Yin, Xiao‐Yuan Mao, Xi Li, Wei Zhang, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 4
Published: over 9 years ago

10.7554/eLife.04235

Polycomb- and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype
Cited by: 43
Author(s): James C. McGann, Jon A. Oyer, Saurabh Garg, Huilan Yao, Jun Li, Xin Feng, Lujian Liao, John R. Yates, Gail Mandel
Software Mentions: 4
Published: almost 12 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.29156

Major transcriptional changes observed in the Fulani, an ethnic group less susceptible to malaria
Cited by: 33
Author(s): Jaclyn Quin, Ioana Bujila, Mariama Chérif, Guillaume S. Sanou, Ying Qu, Manijeh Vafa Homann, Anna Rolicka, Sodiomon B. Sirima, Mary A. O’Connell, Andreas Lennartsson, Marita Troye‐Blomberg, Issa Nébié, Ann‐Kristin Östlund Farrants
Software Mentions: 4
Published: almost 9 years ago

10.2196/14861

An Internet-Based Psychological Intervention With a Serious Game to Improve Vitality, Psychological and Physical Condition, and Immune Function in Healthy Male Adults: Randomized Controlled Trial
Cited by: 3
Author(s): Lemmy Schakel, Dieuwke S. Veldhuijzen, Henriët van Middendorp, Corine Prins, Anne M H F Drittij, Frank Vrieling, Leo G. Visser, Tom H. M. Ottenhoff, Simone A. Joosten, Andrea Evers
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.64204

Single-PanIN-seq unveils that ARID1A deficiency promotes pancreatic tumorigenesis by attenuating KRAS-induced senescence
Cited by: 5
Author(s): Shou Liu, Wenjian Cao, Yichi Niu, Jiayi Luo, Yanhua Zhao, Zheng Hu, Chenghang Zong
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph17249185

Work Ability among Upper-Secondary School Teachers: Examining the Role of Burnout, Sense of Coherence, and Work-Related and Lifestyle Factors
Cited by: 11
Author(s): Petr Hlaďo, Jaroslava Dosedlová, Klára Harvánková, Petr Novotný, Jaroslav Gottfried, Karel Rečka, Markéta Petrovová, Bohumil Pokorný, Ilona Štorová
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22157834

Individual DNA Methylation Pattern Shifts in Nanoparticles-Exposed Workers Analyzed in Four Consecutive Years
Cited by: 6
Author(s): Andrea Rössnerová, K. Hoňková, Irena Chvojková, Daniela Pelclová, Vladimı́r Ždı́mal, Jaroslav A. Hubacek, Lucie Lischková, Štěpánka Vlčková, Jakub Ondráček, Štěpánka Dvořáčková, Jan Topinka, Pavel Rössner
Software Mentions: 4
Published: about 5 years ago

10.3390/ijerph17197258

Does Motivation in Physical Education Have an Impact on Out-of-School Physical Activity over Time? A Longitudinal Approach
Cited by: 17
Author(s): Djenna Hutmacher, Melanie Eckelt, Andreas Bund, Georges Steffgen
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13104-020-05371-0

FINET: Fast Inferring NETwork
Cited by: 9
Author(s): Anyou Wang, Rong Hai
Software Mentions: 4
Published: over 5 years ago

10.3390/jpm11090863

Prediction of Hemorrhagic Transformation after Ischemic Stroke Using Machine Learning
Cited by: 5
Author(s): Jeong-Myeong Choi, Seung Young Seo, Pum-Jun Kim, Yu-Seop Kim, Sang-Hwa Lee, Jong-Hee Sohn, Dong Kyu Kim, Jaejun Lee, Chul‐Ho Kim
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijerph16111992

Applying Deep Neural Networks and Ensemble Machine Learning Methods to Forecast Airborne Ambrosia Pollen
Cited by: 18
Author(s): Gebreab K. Zewdie, David J. Lary, Estelle Levetin, Gemechu Fanta Garuma
Software Mentions: 4
Published: about 7 years ago

10.3390/ijms22041912

Sensitivity to Cisplatin in Head and Neck Cancer Cells Is Significantly Affected by Patient-Derived Cancer-Associated Fibroblasts
Cited by: 13
Author(s): Barbora Peltanová, Marketa Liskova, Jaromír Gumulec, Martina Raudenská, Hana Polanská, Tomáš Vaculovič, David Kalfeřt, Marek Grega, Jan Plzák, Jan Betka, Michal Masařík
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2012.00320

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data
Cited by: 7
Author(s): Abhinav Nellore, Konstantin K. Bobkov, Elizabeth D. Howe, Aleksandr Pankov, Aaron A. Diaz, Jun S. Song
Software Mentions: 4
Published: over 13 years ago

10.3390/ijms21062249

AHR Signaling Dampens Inflammatory Signature in Neonatal Skin γδ T Cells
Cited by: 11
Author(s): Katja Merches, Alfonso Schiavi, Heike Weighardt, Swantje Steinwachs, Nadine Teichweyde, Irmgard Förster, K Hochrath, Beatrix Schumak, Natascia Ventura, Patrick Petzsch, Karl Köhrer, Charlotte Esser
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.119.400070

Long-Term Conservation of Ohnologs Through Partial Tetrasomy Following Whole-Genome Duplication in Salmonidae
Cited by: 24
Author(s): Matthew A. Campbell, Matthew C. Hale, Garrett J. McKinney, Krista M. Nichols, Devon E. Pearse
Software Mentions: 4
Published: about 7 years ago

10.1093/hmg/ddab140

Human photoreceptor cells from different macular subregions have distinct transcriptional profiles
Cited by: 15
Author(s): Andrew P. Voigt, Nathaniel K. Mullin, S. Scott Whitmore, Adam P. DeLuca, Erin R Burnight, Xiuying Liu, Budd A. Tucker, Todd E. Scheetz, Edwin M Stone, Robert F. Mullins
Software Mentions: 4
Published: about 5 years ago

10.1534/g3.119.400294

Open Chromatin Profiling in Adipose Tissue Marks Genomic Regions with Functional Roles in Cardiometabolic Traits
Cited by: 18
Author(s): Maren E. Cannon, Kevin W. Currin, Kristin L. Young, Hannah J. Perrin, Swarooparani Vadlamudi, Alexias Safi, Lingyun Song, Ying Wu, Martin Wabitsch, Markku Laakso, Gregory E. Crawford, Karen L. Mohlke
Software Mentions: 4
Published: about 7 years ago

10.7717/peerj.2681

RGFA: powerful and convenient handling of assembly graphs
Cited by: 5
Author(s): Giorgio Gonnella, Stefan Kurtz
Software Mentions: 4
Published: over 9 years ago

10.12688/f1000research.20233.1

A Sequence Distance Graph framework for genome assembly and analysis
Cited by: 3
Author(s): Luis Yanes, Gonzalo Garcia Accinelli, Jonathan Wright, Ben J. Ward, Bernardo Clavijo
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12870-020-2268-y

Modulation of volatile compound metabolome and transcriptome in grape berries exposed to sunlight under dry-hot climate
Cited by: 24
Author(s): Lei He, Xiaoqing Xu, Yu Wang, Wei-Kai Chen, Ruonan Sun, Guodong Cheng, Bin Liu, Changyong Wu, Chang‐Qing Duan, Jun Wang, Qiu-Hong Pan
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2018.00182

Respiratory Disease following Viral Lung Infection Alters the Murine Gut Microbiota
Cited by: 160
Author(s): Helen Groves, Leah Cuthbertson, Phillip James, Miriam F. Moffatt, Michael J. Cox, John S. Tregoning
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.00490

Genomic Investigation of the Strawberry Pathogen Phytophthora fragariae Indicates Pathogenicity Is Associated With Transcriptional Variation in Three Key Races
Cited by: 12
Author(s): Thomas M. Adams, Andrew D. Armitage, Maria K. Sobczyk, Helen Bates, Javier F. Tabima, Brent Kronmiller, Brett M. Tyler, Niklaus J. Grünwald, Jim M. Dunwell, Charlotte F. Nellist, Richard J. Harrison
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2018.01339

Arbuscular Mycorrhizal Symbiosis Leads to Differential Regulation of Drought-Responsive Genes in Tissue-Specific Root Cells of Common Bean
Cited by: 29
Author(s): Gustavo Henrique Recchia, Enéas Ricardo Konzen, Fernanda Cassieri, Danielle Gregório Gomes Caldas, Siu Mui Tsai
Software Mentions: 4
Published: about 8 years ago

10.1172/JCI96138

REVERBa couples the circadian clock to hepatic glucocorticoid action
Cited by: 69
Author(s): Giorgio Caratti, Mudassar Iqbal, Louise Hunter, Dong Hwan Kim, Ping Wang, Ryan Vonslow, Nicola Begley, Abigail J. Tetley, Joanna Woodburn, Marie Pariollaud, Robert Maidstone, Ian J. Donaldson, Zhenguang Zhang, Louise Ince, Gareth Kitchen, Matthew Baxter, Toryn Poolman, Dion A. Daniels, David R. Stirling, Chad Brocker, Frank J. Gonzalez, A. S. I. Loudon, David A. Bechtold, Magnus Rattray, Laura Matthews, David Ray
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2019.01245

Outbreaks of an Emerging Viral Disease Covary With Differences in the Composition of the Skin Microbiome of a Wild United Kingdom Amphibian
Cited by: 23
Author(s): Lewis J. Campbell, Trenton W. J. Garner, Kevin Hopkins, Amber Gieselle Firefly Griffiths, Xavier A. Harrison
Software Mentions: 4
Published: about 7 years ago

10.1242/bio.049809

Single cell force profiling of human myofibroblasts reveals a biophysical spectrum of cell states
Cited by: 6
Author(s): T. B. Layton, Lynn M. Williams, Huw Colin‐York, Fiona E. McCann, Marisa Cabrita, Marc Feldmann, Cameron Brown, Weilin Xie, Marco Fritzsche, Dominic Furniss, Jagdeep Nanchahal
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2105-8-421

A procedure for the estimation over time of metabolic fluxes in scenarios where measurements are uncertain and/or insufficient
Cited by: 54
Author(s): Francisco Llaneras, Jesús Picó
Software Mentions: 4
Published: almost 19 years ago

10.1186/1471-2407-14-739

MicroRNA expression as risk biomarker of breast cancer metastasis: a pilot retrospective case-cohort study
Cited by: 42
Author(s): Augusto L F Marino, Adriane Feijó Evangelista, René Aloísio da Costa Vieira, Taciane Macedo, Lígia Maria Kerr, Lucas Faria Abrahão-Machado, Adhemar Longatto‐Filho, Henrique C. S. Silveira, Márcia Maria Chiquitelli Marques
Software Mentions: 4
Published: almost 12 years ago

10.3389/fmicb.2021.576763

Responses of Soil Fungal Communities to Lime Application in Wheat Fields in the Pacific Northwest
Cited by: 5
Author(s): Chuntao Yin, Daniel Schlatter, Duncan R. Kroese, Timothy C. Paulitz, Christina H. Hagerty
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-77259-9

A novel methylation signature predicts radiotherapy sensitivity in glioma
Cited by: 5
Author(s): Yuemei Feng, Guanzhang Li, Zhongcheng Shi, Xu Yan, Zhiliang Wang, Haiyan Jiang, Ye Chen, Renpeng Li, You Zhai, Yuanhao Chang, Wei Zhang, Fang Yuan
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.670854

Integrative Analysis of DNA Methylation and Transcriptome Identifies a Predictive Epigenetic Signature Associated With Immune Infiltration in Gliomas
Cited by: 7
Author(s): Jianlei Zhang, Yin Jiang, Li Luo, Dongzhou Huang, Dongfeng Zhai, Ge Wang, Ning Xu, Minqiang Yang, Ying Song, Guopei Zheng, Qiong Zhang
Software Mentions: 4
Published: about 5 years ago

10.1186/s12879-020-05600-8

Describing nearly two decades of Chagas disease in Germany and the lessons learned: a retrospective study on screening, detection, diagnosis, and treatment of Trypanosoma cruzi infection from 2000 – 2018
Cited by: 10
Author(s): Jessica Michelle Guggenbühl Noller, Günter Fröschl, Philip Eisermann, Johannes Jochum, Stefanie Theuring, Ingrid Reiter‐Owona, Alfred Lennart Bissinger, Michael Höelscher, Abhishek Bakuli, Franz-Josef Falkner von Sonnenburg, Camilla Rothe, Gisela Bretzel, Pedro Albajar-Viñas, Lise Grout, Michael Pritsch
Software Mentions: 4
Published: over 5 years ago

10.3390/jdb8010003

Matrix Metalloproteinase 13 Activity is Required for Normal and Hypoxia-Induced Precocious Hatching in Zebrafish Embryos
Cited by: 9
Author(s): Christopher D. Small, Megan el-Khoury, Ghislain Deslongchamps, Tillmann J. Benfey, Bryan D. Crawford
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0254254

Seasonal and diel activity patterns of the endangered taiga bean goose (Anser fabalis fabalis) during the breeding season, monitored with camera traps
Cited by: 2
Author(s): Milaja Nykänen, Hannu Pöysä, Sari Hakkarainen, Tiina Rajala, Juho Matala, Mervi Kunnasranta
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.595910

A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data
Cited by: 17
Author(s): Xiaochen Yin, Tomer Altman, Erica Rutherford, Kiana West, Yonggan Wu, Jinlyung Choi, Paul L. Beck, Gilaad G. Kaplan, Karim Dabbagh, Todd Z. DeSantis, Shoko Iwai
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.02371

The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions
Cited by: 10
Author(s): Eoghan M. Smyth, Suhana Chattopadhyay, Kelsey R. Babik, Molly C. Reid, Jessica Chopyk, Leena Malayil, Prachi Kulkarni, Lauren E. Hittle, Pamela I. Clark, Amy R. Sapkota, Emmanuel F. Mongodin
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-72045-z

A data-driven medication score predicts 10-year mortality among aging adults
Cited by: 3
Author(s): Paavo Häppölä, Aki S. Havulinna, Tõnis Tasa, Nina Mars, Markus Perola, Mikko Kallela, Lili Milani, Seppo Koskinen, Veikko Salomaa, Benjamin M. Neale, Aarno Palotie, Mark J. Daly, Samuli Ripatti
Software Mentions: 4
Published: almost 6 years ago