10.1186/1756-3305-5-270

Predicting the spatio-temporal distribution of Culicoides imicola in Sardinia using a discrete-time population model
Cited by: 18
Author(s): Thibaud Rigot, Annamaria Conte, Maria Goffredo, Els Ducheyne, Guy Hendrickx, Marius Gilbert
Software Mentions: 4
Published: over 13 years ago

10.1038/srep24375

RNA-seq analysis for detecting quantitative trait-associated genes
Cited by: 33
Author(s): Minseok Seo, Kwondo Kim, Joon Yoon, Jin Young Jeong, Hyun-Jeong Lee, Seoae Cho, Heebal Kim
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0132178

What Is a Mild Winter? Regional Differences in Within-Species Responses to Climate Change
Cited by: 105
Author(s): Sebastian Vetter, T. Ruf, Claudia Bieber, Walter Arnold
Software Mentions: 4
Published: about 11 years ago

10.15252/embj.2019104159

Deciphering the regulatory landscape of fetal and adult γδ T‐cell development at single‐cell resolution
Cited by: 38
Author(s): Sagar, Maria Pokrovskii, Josip Stefan Herman, Shruti Naik, Elisabeth Sock, Patrice Zeis, Ute Lausch, Michael Wegner, Yakup Tanriver, Dan R. Littman, Dominic Grün
Software Mentions: 4
Published: about 6 years ago

10.14814/phy2.14012

Fecal transplant modifies urine chemistry risk factors for urinary stone disease
Cited by: 18
Author(s): Joshua M. Stern, Marcia Urban‐Maldonado, Mykhaylo Usyk, Ignacio Granja, Daniel Schoenfeld, Kelvin P. Davies, Ilir Agalliu, John R. Asplin, Robert D. Burk, Sylvia O. Suadicani
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1004790

Pathway-Based Genomics Prediction using Generalized Elastic Net
Cited by: 82
Author(s): Artem Sokolov, Daniel E. Carlin, Evan O. Paull, Robert Baertsch, Joshua M. Stuart
Software Mentions: 4
Published: over 10 years ago

10.1002/ece3.3359

Multilevel landscape utilization of the Siberian flying squirrel: Scale effects on species habitat use
Cited by: 13
Author(s): Jaanus Remm, Ilpo K. Hanski, Sakari Tuominen, Vesa Selonen
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13321-019-0398-8

The chemfp project
Cited by: 21
Author(s): Andrew Dalke
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.00322

Metatranscriptomics Reveals Antibiotic-Induced Resistance Gene Expression in the Murine Gut Microbiota
Cited by: 11
Author(s): Benjamin J. Korry, Damien J. Cabral, Peter Belenky
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-019-0626-8

Transcriptome, proteome and draft genome of Euglena gracilis
Cited by: 88
Author(s): ThankGod Echezona Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana-Molina, Ellis C. O’Neill, Nerissa N. Nankissoor, Nithya Vadakedath, Viktor Daiker, Samson O. Obado, Sara Silva Pereira, Andrew P. Jackson, Damien P. Devos, Julius Lukeš, Michael Lebert, Sue Vaughan, Vladimı́r Hampl, Mark Carrington, Michael L. Ginger, Joel B. Dacks, Steven L. Kelly, Mark C. Field
Software Mentions: 4
Published: over 7 years ago

10.1038/s41398-017-0050-1

Gene expression associated with PTSD in World Trade Center responders: An RNA sequencing study
Cited by: 56
Author(s): Pei‐Fen Kuan, Monika A. Waszczuk, Roman Kotov, Sean Clouston, Xiaohua Yang, Prashant Singh, Sean T. Glenn, Eduardo Cortes Gomez, Jianmin Wang, Evelyn J. Bromet, Benjamin J. Luft
Software Mentions: 4
Published: over 8 years ago

10.1186/s12915-021-01104-2

A novel plant-fungal association reveals fundamental sRNA and gene expression reprogramming at the onset of symbiosis
Cited by: 7
Author(s): Ena Šečić, Silvia Zanini, Daniel Wibberg, Lukas Jelonek, Tobias Busche, Jörn Kalinowski, Sabrine Nasfi, Jennifer Thielmann, Jafargholi Imani, Jens Steinbrenner, Karl‐Heinz Kogel
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1006451

Functional conservation of sequence determinants at rapidly evolving regulatory regions across mammals
Cited by: 9
Author(s): Iksoo Huh, Isabel Mendizabal, Taesung Park, Soojin V. Yi
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12915-020-00779-3

Mapping DNA interaction landscapes in psoriasis susceptibility loci highlights KLF4 as a target gene in 9q31
Cited by: 15
Author(s): Helen Ray-Jones, Kate Duffus, Amanda McGovern, Paul Martin, Chenfu Shi, Jenny Hankinson, Oliver Gough, Annie Yarwood, Andrew P. Morris, Antony Adamson, Craig Taylor, Julia Ding, Vasanthi Priyadarshini Gaddi, Yao Fu, Patrick M. Gaffney, Gisela Orozco, Richard B Warren, Steve Eyre
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008278

Optimising age coverage of seasonal influenza vaccination in England: A mathematical and health economic evaluation
Cited by: 6
Author(s): Edward M. Hill, Stavros Petrou, Henry Forster, Simon de Lusignan, Ivelina Yonova, Matthew James Keeling
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12915-017-0352-z

The landscape of sex-differential transcriptome and its consequent selection in human adults
Cited by: 180
Author(s): Moran Gershoni, Shmuel Pietrokovski
Software Mentions: 4
Published: over 9 years ago

10.1093/conphys/coaa045

Physiological mechanisms linking cold acclimation and the poleward distribution limit of a range-extending marine fish
Cited by: 9
Author(s): Barrett W. Wolfe, Quinn P. Fitzgibbon, Jayson M. Semmens, S Tracey, Gretta T. Pecl
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008120

Deconvolving the contributions of cell-type heterogeneity on cortical gene expression
Cited by: 62
Author(s): Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina J. Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi
Software Mentions: 4
Published: almost 6 years ago

10.3390/insects10120446

The Response of Neotropical Dragonflies (Insecta: Odonata) to Local and Regional Abiotic Factors in Small Streams of the Amazon
Cited by: 21
Author(s): José Max Barbosa de Oliveira, Karina Dias-Silva, Maria Alexandra Teodósio, Leandro Juen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1007982

It’s about time: Analysing simplifying assumptions for modelling multi-step pathways in systems biology
Cited by: 17
Author(s): Niklas Korsbo, Henrik Jönsson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1006520

Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.01707

Synergic Effects of Temperature and Irradiance on the Physiology of the Marine Synechococcus Strain WH7803
Cited by: 16
Author(s): Ulysse Guyet, Ngoc-An Nguyen, Hugo Doré, Julie Haguait, Justine Pittera, Maël Conan, Morgane Ratin, Erwan Corre, Gildas Le Corguillé, Loraine Brillet-Guéguen, Mark Hoebeke, Christophe Six, Claudia Steglich, Anne Siegel, Damien Eveillard, Frédéric Partensky, Laurence Garczarek
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-020-07218-1

Targeted mutagenesis of ∆5 and ∆6 fatty acyl desaturases induce dysregulation of lipid metabolism in Atlantic salmon (Salmo salar)
Cited by: 6
Author(s): Yang Jin, Alex K. Datsomor, Rolf Erik Olsen, Jon Olav Vik, Jacob Torgersen, Rolf B. Edvardsen, Anna Wargelius, Per Winge, Fabian Grammes
Software Mentions: 4
Published: over 5 years ago

10.1186/s12885-021-08218-4

MACE-Seq-based coding RNA and TrueQuant-based small RNA profile in breast cancer: tumor-suppressive miRNA-1275 identified as a novel marker
Cited by: 5
Author(s): Sevan Omer Majed, Suhad Asad Mustafa
Software Mentions: 4
Published: over 5 years ago

10.1111/1365-2664.12586

Resolving large-scale pressures on species and ecosystems: propensity modelling identifies agricultural effects on streams
Cited by: 17
Author(s): Caitlin E. Pearson, Stephen James Ormerod, William Oliver Christian Symondson, Ian P. Vaughan
Software Mentions: 4
Published: over 10 years ago

10.7717/peerj.11074

Identification of a novel autophagy signature for predicting survival in patients with lung adenocarcinoma
Cited by: 6
Author(s): Jian Duan, Youming Lei, Guoli Lv, Yinqiang Liu, Zhao Wei, Qingmei Yang, Xin Su, Zhijian Song, Leilei Lu, Yunfei Shi
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7322

Local environment‐driven adaptive evolution in a marine invasive ascidian (<i>Molgula manhattensis</i>)
Cited by: 10
Author(s): Yiyong Chen, Yangchun Gao, Xuena Huang, Shiguo Li, Aibin Zhan
Software Mentions: 4
Published: over 5 years ago

10.1186/s13321-016-0117-7

ADMET evaluation in drug discovery: 15. Accurate prediction of rat oral acute toxicity using relevance vector machine and consensus modeling
Cited by: 94
Author(s): Tailong Lei, Youyong Li, Yuelin Song, Dan Li, Huiyong Sun, Tingjun Hou
Software Mentions: 4
Published: over 10 years ago

10.1186/s12864-016-2888-7

Comparison of pre-processing methods for multiplex bead-based immunoassays
Cited by: 13
Author(s): Tanja K. Rausch, Arne Schillert, Andreas Ziegler, Angelika Lüking, Hans‐Dieter Zucht, Peter Schulz‐Knappe
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12885-020-07513-w

Ovarian cancer cells direct monocyte differentiation through a non-canonical pathway
Cited by: 5
Author(s): Kaitlin C. Fogg, Andrew Miller, Ying Liu, Will Flanigan, Alyssa Walker, Amy O'Shea, Christina Kendziorski, Pamela K. Kreeger
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12898-019-0271-7

Adaptation of wild boar (Sus scrofa) activity in a human-dominated landscape
Cited by: 52
Author(s): Franz Johann, Markus Handschuh, Peter Linderoth, Carsten F. Dormann, Janosch Arnold
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-021-98534-3

Cellular, molecular, and therapeutic characterization of pilocarpine-induced temporal lobe epilepsy
Cited by: 4
Author(s): Nicholas Henkel, Marissa A. Smail, Xiaojun Wu, Heather A. Enright, Nicholas O. Fischer, Hunter M. Eby, Robert E. McCullumsmith, Rammohan Shukla
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41398-017-0058-6

Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons
Cited by: 43
Author(s): Ping Wang, Dejian Zhao, Herbert M. Lachman, Deyou Zheng
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.1592

The role of geography and host abundance in the distribution of parasitoids of an alien pest
Cited by: 7
Author(s): Petra Nováková, Jaroslav Holuša, Jakub Horák
Software Mentions: 4
Published: over 10 years ago

10.1111/eva.12907

<i>Rattus</i>population genomics across the Haida Gwaii archipelago provides a framework for guiding invasive species management
Cited by: 11
Author(s): Bryson M. F. Sjodin, Robyn L. Irvine, Adam T. Ford, Gregg R. Howald, Michael A. Russello
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2021.642504

Genetic Diversity and Demographic History of the Shaggy Soft-Haired Mouse Abrothrix hirta (Cricetidae; Abrotrichini)
Cited by: 8
Author(s): Lourdes Valdez, Guillermo D’Elı́a
Software Mentions: 4
Published: over 5 years ago

10.1186/s13072-018-0225-x

Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs
Cited by: 31
Author(s): Jenny van Dongen, Erik A. Ehli, Ritsert C. Jansen, Catharina E. M. van Beijsterveldt, Gonneke Willemsen, Jouke Jan Hottenga, Noah A. Kallsen, Stephen Peyton, Charles E. Breeze, C. Kluft, Bastiaan T. Heijmans, Meike Bartels, Gareth E. Davies, Dorret I. Boomsma
Software Mentions: 4
Published: almost 8 years ago

10.1002/evl3.225

Ecological interactions shape the evolution of flower color in communities across a temperate biodiversity hotspot
Cited by: 5
Author(s): Alexander Skeels, Russell Dinnage, Iliana Medina, Marcel Cardillo
Software Mentions: 4
Published: about 5 years ago

10.1186/s13148-020-00966-7

DNA methylation signatures to predict the cervicovaginal microbiome status
Cited by: 3
Author(s): Nuno R. Nené, James E. Barrett, Allison Jones, Iona Evans, Daniel Reisel, John F. Timms, Tobias Paprotka, Andreas Leimbach, D. Franchi, Nicoletta Colombo, Line Bjørge, Michal Zikán, David Cibula, Martin Widschwendter
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-020-04267-z

Contrasted transmission efficiency of Zika virus strains by mosquito species Aedes aegypti, Aedes albopictus and Culex quinquefasciatus from Reunion Island
Cited by: 11
Author(s): Yann Gomard, Cyrille Lebon, Patrick Mavingui, Célestine M. Atyame
Software Mentions: 4
Published: almost 6 years ago

10.1093/bioinformatics/btx094

Glimma: interactive graphics for gene expression analysis
Cited by: 120
Author(s): Shian Su, Charity W. Law, Casey Ah-Cann, Marie Liesse Asselin-Labat, Marnie E. Blewitt, Matthew E. Ritchie
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-020-3443-8

MethylNet: an automated and modular deep learning approach for DNA methylation analysis
Cited by: 61
Author(s): Joshua Levy, Alexander J. Titus, Curtis L. Petersen, Youdinghuan Chen, Lucas A. Salas, Brock C. Christensen
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0242718

Happiness around the world: A combined etic-emic approach across 63 countries
Cited by: 17
Author(s): Gwendolyn Gardiner, Daniel Lee, Erica Baranski, David C. Funder
Software Mentions: 4
Published: over 5 years ago

10.1093/bioinformatics/bts458

MolBioLib: a C++11 framework for rapid development and deployment of bioinformatics tasks
Cited by: 9
Author(s): Toshiro K. Ohsumi, Mark Borowsky
Software Mentions: 4
Published: about 14 years ago

10.1155/2021/6628391

Identification of Prognostic Risk Model Based on DNA Methylation-Driven Genes in Esophageal Adenocarcinoma
Cited by: 2
Author(s): Yuhua Chen, Jinjie Wang, Hao Zhou, Zhanghao Huang, Qian Li, Wei Shi
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-15-91

Differential meta-analysis of RNA-seq data from multiple studies
Cited by: 88
Author(s): Andrea Rau, Guillemette Marot, Florence Jaffrézic
Software Mentions: 4
Published: over 12 years ago

10.1242/bio.047829

Heterogeneous beta-catenin activation is sufficient to cause hepatocellular carcinoma in zebrafish
Cited by: 13
Author(s): Sharanya Maanasi Kalasekar, Srishti Kotiyal, Christopher J. Conley, Cindy Phan, Annika Young, Kimberley Evason
Software Mentions: 4
Published: over 7 years ago

10.3389/fmicb.2021.639997

Identifying the Specific Root Microbiome of the Hyperaccumulator Noccaea brachypetala Growing in Non-metalliferous Soils
Cited by: 0
Author(s): Soledad Martos, John Danku, Laura Pérez‐Martín, Mercè Llugany, Catalina Cabot, Charlotte Poschenrieder
Software Mentions: 4
Published: about 5 years ago

10.1186/s13104-020-05357-y

Comprehensive analysis of single-cell RNA sequencing data from healthy human marrow hematopoietic cells
Cited by: 4
Author(s): Xin Zhao, Shaojian Gao, Sachiko Kajigaya, Qingguo Liu, Zhijie Wu, Xingmin Feng, Fengkui Zhang, Neal S. Young
Software Mentions: 4
Published: over 5 years ago

10.1186/s12918-018-0616-4

BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources
Cited by: 26
Author(s): A. Messina, Antonino Fiannaca, Laura La Paglia, Massimo La Rosa, Alfonso Urso
Software Mentions: 4
Published: over 7 years ago

10.1155/2015/205392

Soil Parameter Mapping and Ad Hoc Power Analysis to Increase Blocking Efficiency Prior to Establishing a Long-Term Field Experiment
Cited by: 1
Author(s): Doug Collins, Chris A. Benedict, Andy I. Bary, Craig Cogger
Software Mentions: 4
Published: over 11 years ago

10.3390/genes12030332

Application of Genomics to Understand Salt Tolerance in Lentil
Cited by: 7
Author(s): D. R. R. P. Dissanayake, Noel O. I. Cogan, K. F. Smith, Sukhjiwan Kaur
Software Mentions: 4
Published: over 5 years ago

10.3390/cells9071745

Ribosomal Protein uL11 as a Regulator of Metabolic Circuits Related to Aging and Cell Cycle
Cited by: 7
Author(s): Mateusz Mołoń, Eliza Molestak, Monika Kula-Maximenko, Przemysław Grela, Marek Tchórzewski
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-01032-8

Transcriptomic analysis reveals a previously unknown role for CD8+ T-cells in rVSV-EBOV mediated protection
Cited by: 28
Author(s): Andrea Menicucci, Suhas Sureshchandra, Andrea Marzi, Heinz Feldmann, Ilhem Messaoudi
Software Mentions: 4
Published: over 9 years ago

10.1111/tpj.14205

Identification and characterization of a core set of ROS wave‐associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
Cited by: 84
Author(s): Sara I. Zandalinas, Soham Sengupta, David J. Burks, Rajeev K. Azad, Ron Mittler
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0240619

Psychometric properties of the German version of the Self Image Scale (SIS-D) in a sample of cancer patients
Cited by: 2
Author(s): Jan Brederecke, Tanja Zimmermann
Software Mentions: 4
Published: almost 6 years ago

10.1038/srep45477

CombiROC: an interactive web tool for selecting accurate marker combinations of omics data
Cited by: 69
Author(s): Saveria Mazzara, Riccardo L. Rossi, Renata Grifantini, Simone Donizetti, Sergio Abrignani, Mauro Bombaci
Software Mentions: 4
Published: over 9 years ago

10.1186/s12967-021-02870-x

High copy number variations, particular transcription factors, and low immunity contribute to the stemness of prostate cancer cells
Cited by: 9
Author(s): Zao Dai, Ping Liu
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-7-264

Spatial normalization of array-CGH data
Cited by: 76
Author(s): Pierre Neuvial, Philippe Hupé, Isabel Martínez Brito, Stéphane Liva, Élodie Manié, Caroline Brennetot, François Radvanyi, Alain Aurias, Emmanuel Barillot
Software Mentions: 4
Published: about 20 years ago

10.1002/ece3.6514

Congruence, but no cascade—Pelagic biodiversity across three trophic levels in Nordic lakes
Cited by: 7
Author(s): Tom Andersen, Dag O. Hessen, Johnny Peter Håll, Maryia Khomich, Marcia Kyle, Markus Lindholm, Séréna Rasconi, Birger Skjelbred, Jan‐Erik Thrane, Bjørn Walseng
Software Mentions: 4
Published: about 6 years ago

10.3390/nu12051257

Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota—Results from the PAGODA Trial
Cited by: 35
Author(s): Simon Reider, Simon Moosmang, J Tragust, Lovro Trgovec-Greif, Simon Tragust, Lorenz Perschy, Nicole Przysiecki, Sonja Sturm, Herbert Tilg, Hermann Stuppner, Thomas Rattei, Alexander R. Moschen
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.3569

Targeted NGS for species level phylogenomics: “made to measure” or “one size fits all”?
Cited by: 42
Author(s): Malvina Kadlec, Baoheng Du, Nicholas C Le Maitre, Michael D. Pirie
Software Mentions: 4
Published: about 9 years ago

10.1186/s10020-019-0102-5

Gut microbiota promote the inflammatory response in the pathogenesis of systemic lupus erythematosus
Cited by: 68
Author(s): Yinglong Ma, Xiaoxue Xu, Mengtao Li, Jun Cai, Qiang Wang, Haitao Niu
Software Mentions: 4
Published: about 7 years ago

10.3390/nu12123602

Epigenetic Patterns in Five-Year-Old Children Exposed to a Low Glycemic Index Dietary Intervention during Pregnancy: Results from the ROLO Kids Study
Cited by: 10
Author(s): Aisling A. Geraghty, A. Sexton-Oates, Eileen C. O’Brien, Richard Saffery, Fionnuala M. McAuliffe
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0189955

A genome-wide study to identify genes responsible for oviduct development in chickens
Cited by: 9
Author(s): Manman Shen, Liang Qu, Meng Ma, Taocun Dou, Jian Lü, Jun Guo, Yuping Hu, Xingguo Wang, Yongfeng Li, Kehua Wang, Ning Yang
Software Mentions: 4
Published: over 8 years ago

10.1098/rsob.200253

The role of antioxidants in restoring MAPK 14 and a DNA damage marker level following autophagy suppression
Cited by: 3
Author(s): Abdalla Elbialy
Software Mentions: 4
Published: over 5 years ago

10.18632/oncotarget.8917

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma
Cited by: 131
Author(s): Ikhlak Ahmed, Thasni Karedath, Simeon Andrews, Iman K. Al-Azwani, Yasmin Ali Mohamoud, Denis Querleu, Arash Rafii, Joel A. Malek
Software Mentions: 4
Published: over 10 years ago

10.18632/oncotarget.15068

Genome-scale analysis identifies GJB2 and ERO1LB as prognosis markers in patients with pancreatic cancer
Cited by: 39
Author(s): Tao Zhu, Yuanfeng Gao, Yixin Chen, Zhibin Wang, Ji‐Ye Yin, Xiao‐Yuan Mao, Xi Li, Wei Zhang, Hong‐Hao Zhou, Zhao‐Qian Liu
Software Mentions: 4
Published: over 9 years ago

10.1186/s40168-018-0518-0

Bacterial microbiota protect an invasive bark beetle from a pine defensive compound
Cited by: 47
Author(s): Chihang Cheng, Jacob D. Wickham, Li Chen, Dandan Xu, Min Lü, Jianghua Sun
Software Mentions: 4
Published: about 8 years ago

10.18632/aging.202228

Identification of SCARA3 with potential roles in metabolic disorders
Cited by: 7
Author(s): Hui Peng, Qi Guo, Tian Su, Ye Xiao, Changjun Li, Yan Huang, Xiang‐Hang Luo
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.04235

Polycomb- and REST-associated histone deacetylases are independent pathways toward a mature neuronal phenotype
Cited by: 43
Author(s): James C. McGann, Jon A. Oyer, Saurabh Garg, Huilan Yao, Jun Li, Xin Feng, Lujian Liao, John R. Yates, Gail Mandel
Software Mentions: 4
Published: almost 12 years ago

10.1155/2019/1571045

A Circulating miRNA-Based Scoring System Established by WGCNA to Predict Colon Cancer
Cited by: 2
Author(s): Dashan Qin, Rui Wei, Si Liu, Shoumin Zhu, Shutian Zhang, Li Min
Software Mentions: 4
Published: over 6 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.3390/mi8080233

Operation of a MOEMS Deformable Mirror in Cryo: Challenges and Results
Cited by: 5
Author(s): Frédéric Zamkotsian, Patrick Lanzoni, Rudy Barette, Michael A. Helmbrecht, Franck Marchis, Alex Teichman
Software Mentions: 4
Published: about 9 years ago

10.7554/eLife.29156

Major transcriptional changes observed in the Fulani, an ethnic group less susceptible to malaria
Cited by: 33
Author(s): Jaclyn Quin, Ioana Bujila, Mariama Chérif, Guillaume S. Sanou, Ying Qu, Manijeh Vafa Homann, Anna Rolicka, Sodiomon B. Sirima, Mary A. O’Connell, Andreas Lennartsson, Marita Troye‐Blomberg, Issa Nébié, Ann‐Kristin Östlund Farrants
Software Mentions: 4
Published: almost 9 years ago

10.1128/mSphere.00560-17

Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates
Cited by: 17
Author(s): Francesco Multinu, Sean C. Harrington, Jun Chen, Patricio Jeraldo, Stephen Johnson, Nicholas Chia, Marina Walther-Antonio
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-021-85052-5

The holding temperature of blood during a delay to processing can affect serum and plasma protein measurements
Cited by: 8
Author(s): Milton Ashworth, Benjamin Small, Lucy Oldfield, A.G. Evans, William Greenhalf, Christopher Halloran, Eithne Costello
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.5261

<i>Staphylococcus aureus</i> viewed from the perspective of 40,000+ genomes
Cited by: 57
Author(s): Robert A. Petit, Timothy D. Read
Software Mentions: 4
Published: about 8 years ago

10.1186/s12942-015-0001-0

Modelling the potential spatial distribution of mosquito species using three different techniques
Cited by: 33
Author(s): Daniela Cianci, Nienke Hartemink, Adolfo Ibáñez-Justicia
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0210672

Identification of new regulators through transcriptome analysis that regulate anthocyanin biosynthesis in apple leaves at low temperatures
Cited by: 28
Author(s): Tingting Song, Keting Li, Ting Wu, Yi Wang, Xinzhong Zhang, Xuefeng Xu, Yuncong Yao, Zhenhai Han
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.8047

Evolution of winter molting strategies in European and North American migratory passerines
Cited by: 5
Author(s): Claudie Pageau, Jared Sonnleitner, Christopher M. Tonra, Mateen Shaikh, Matthew W. Reudink
Software Mentions: 4
Published: almost 5 years ago

10.3390/s19204402

A Physical Model-Based Observer Framework for Nonlinear Constrained State Estimation Applied to Battery State Estimation
Cited by: 8
Author(s): Jonathan Brembeck
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12859-020-3495-9

YSMR: a video tracking and analysis program for bacterial motility
Cited by: 3
Author(s): Julian Schwanbeck, Ines Oehmig, Jerôme Dretzke, Andreas E. Zautner, Uwe Groß, Wolfgang Bohne
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-015-1491-7

Leaps and lulls in the developmental transcriptome of Dictyostelium discoideum
Cited by: 53
Author(s): Rafael D. Rosengarten, Balaji Santhanam, Danny Fuller, Mariko Katoh-Kurasawa, William F. Loomis, Blaž Zupan, Gad Shaulsky
Software Mentions: 4
Published: over 11 years ago

10.3390/microorganisms9040816

CaptureSeq: Hybridization-Based Enrichment of cpn60 Gene Fragments Reveals the Community Structures of Synthetic and Natural Microbial Ecosystems
Cited by: 8
Author(s): Matthew G. Links, Tim J. Dumonceaux, Erin McCarthy, Sean M. Hemmingsen, Edward Topp, Jennifer Town
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0128465

Connecting Anxiety and Genomic Copy Number Variation: A Genome-Wide Analysis in CD-1 Mice
Cited by: 6
Author(s): Julia Brenndörfer, André Altmann, Regina Widner-Andrä, Benno Pütz, Darina Czamara, Erik Tilch, Tony Kam‐Thong, Peter Weber, Monika Rex‐Haffner, Thomas Bettecken, Andrea Bultmann, Bertram Müller‐Myhsok, Elisabeth Binder, Rainer Landgraf, Ludwig Czibere
Software Mentions: 4
Published: about 11 years ago

10.1002/2211-5463.12700

C7orf59/LAMTOR4 phosphorylation and structural flexibility modulate Ragulator assembly
Cited by: 5
Author(s): Nadia Rasheed, Tatiani B. Lima, Gustavo Fernando Mercaldi, Andrey Fabricio Ziem Nascimento, Ana L S Silva, Germanna Lima Righetto, Liron Bar-Peled, Kuang Shen, David M. Sabatini, Fábio C. Gozzo, Ricardo Aparício, Juliana Helena Costa Smetana
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-018-20200-y

Cultural effects on computational metrics of spatial and temporal context
Cited by: 3
Author(s): Nicholas D. Wright, Jan Grohn, Chen Song, Geraint Rees, Rebecca Lawson
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.49305

Evolution of C4 photosynthesis predicted by constraint-based modelling
Cited by: 42
Author(s): Mary Ann Blätke, Andrea Bräutigam
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-50885-8

Improved gene co-expression network quality through expression dataset down-sampling and network aggregation
Cited by: 25
Author(s): Franziska Liesecke, Johan-Owen De Craene, Sébastien Besseau, Vincent Courdavault, Marc Clastre, Valentin Vergès, Nicolas Papon, Nathalie Giglioli-Guivarc’h, Gaëlle Glévarec, Olivier Pichon, Thomas Dugé de Bernonville
Software Mentions: 4
Published: almost 7 years ago

10.7554/eLife.35551

Ssd1 and Gcn2 suppress global translation efficiency in replicatively aged yeast while their activation extends lifespan
Cited by: 54
Author(s): Zheng Hu, Bo Xia, Spike D. L. Postnikoff, Zih Jie Shen, Alin Tomoiaga, Troy A. A. Harkness, Ja Hwan Seol, Wei Li, Kaifu Chen, Jessica K. Tyler
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0206531

The music that helps people sleep and the reasons they believe it works: A mixed methods analysis of online survey reports
Cited by: 42
Author(s): Tabitha Trahan, Simon J. Durrant, Daniel Müllensiefen, Victoria J. Williamson
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2164-12-S3-S9

UASIS: Universal Automatic SNP Identification System
Cited by: 5
Author(s): Danny Chiang Choon Poo, Shaojiang Cai, James T. L. Mah
Software Mentions: 4
Published: over 15 years ago

10.1016/j.envsoft.2020.104703

PiSCES: Pi(scine) stream community estimation system
Cited by: 3
Author(s): Mike Cyterski, Craig Barber, Mike Galvin, Rajbir Parmar, John M. Johnston, Deron Smith, Amber R. Ignatius, Lourdes Prieto, Kurt Wolfe
Software Mentions: 4
Published: over 6 years ago

10.1155/2014/253013

Polyglot Programming in Applications Used for Genetic Data Analysis
Cited by: 5
Author(s): Robert Nowak
Software Mentions: 4
Published: over 12 years ago

10.1038/s41598-017-03444-y

Repeated evolution of camouflage in speciose desert rodents
Cited by: 29
Author(s): Zbyszek Boratyński, José Carlos Brito, José Luís Cunha, Laurent Granjon, Tapio Mappes, A. Ndiaye, Barbara Rzebik-Kowalska, Nina Serén
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0176119

The role of courtship song in female mate choice in South American Cactophilic Drosophila
Cited by: 16
Author(s): Patricia P. Iglesias, Esteban Hasson
Software Mentions: 4
Published: about 9 years ago

10.1128/mSystems.00003-16

Differential Functional Constraints Cause Strain-Level Endemism in <i>Polynucleobacter</i> Populations
Cited by: 18
Author(s): Naseer Sangwan, Iratxe Zarraonaindia, Jarrad Hampton-Marcell, Herbert Ssegane, Tifani W. Eshoo, Geeta Rijal, M. Cristina Negri, Jack A. Gilbert
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0010485

An Analysis of Genetic Changes during the Divergence of Drosophila Species
Cited by: 13
Author(s): Rui Sousa‐Neves, Alexandre Rosas
Software Mentions: 4
Published: about 16 years ago

10.1186/s12859-017-1554-7

SFREEMAP - A simulation-free tool for stochastic mapping
Cited by: 3
Author(s): Diego Pasqualin, Marcos S. Barbeitos, Fabiano Silva
Software Mentions: 4
Published: over 9 years ago