10.1186/s41065-020-00165-7

Defining muscle-invasive bladder cancer immunotypes by introducing tumor mutation burden, CD8+ T cells, and molecular subtypes
Cited by: 9
Author(s): Zihao Chen, Guojun Liu, Mikhail A. Bolkov, Khyber Shinwari, Irina A. Tuzankina, V. А. Chereshnev, Zhifeng Wang
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-92385-8

Genome-enabled discovery of evolutionary divergence in brains and behavior
Cited by: 4
Author(s): Chinar Patil, J. B. Sylvester, Kawther Abdilleh, Michael Norsworthy, Karen Pottin, Milan Malinsky, Ryan F. Bloomquist, Zachary V. Johnson, Patrick T. McGrath, J. Todd Streelman
Software Mentions: 4
Published: about 5 years ago

10.1042/BSR20194337

Mining TCGA database for tumor mutation burden and their clinical significance in bladder cancer
Cited by: 71
Author(s): Jia Lv, Yongze Zhu, Alin Ji, Qi Zhang, Guodong Liao
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms21062252

Vesicles Shed by Pathological Murine Adipocytes Spread Pathology: Characterization and Functional Role of Insulin Resistant/Hypertrophied Adiposomes
Cited by: 25
Author(s): Tamara Camino, Nerea Lago-Baameiro, Susana B. Bravo, Aurelio M. Sueiro, Iván Couto, F. De Toro Santos, Javier Baltar, Felipe Casanueva Freijó, María Pardo
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0164091

Depression among Parents Two to Six Years Following the Loss of a Child by Suicide: A Novel Prediction Model
Cited by: 3
Author(s): Tommy Nyberg, Ida Hed Myrberg, Pernilla Omérov, Gunnar Steineck, Ullakarin Nyberg
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12859-017-1820-8

An effective approach to detecting both small and large complexes from protein-protein interaction networks
Cited by: 18
Author(s): Bin Xu, Yan Wang, Zewei Wang, Jiaogen Zhou, Shuigeng Zhou, Jihong Guan
Software Mentions: 4
Published: almost 9 years ago

10.3389/fonc.2021.680918

Hippo Pathway Core Genes Based Prognostic Signature and Immune Infiltration Patterns in Lung Squamous Cell Carcinoma
Cited by: 26
Author(s): Chang Gu, Jiafei Chen, Xuening Dang, Chunji Chen, Zhenyu Huang, Weidong Shen, Xin Shi, Chenyang Dai, Chang Chen
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-16-S17-S5

A computational method for drug repositioning using publicly available gene expression data
Cited by: 4
Author(s): K M Shabana, K. A. Abdul Nazeer, Meeta Pradhan, Mathew Palakal
Software Mentions: 4
Published: over 10 years ago

10.3389/fmolb.2021.648012

Artificial Intelligence in Epigenetic Studies: Shedding Light on Rare Diseases
Cited by: 10
Author(s): Sandra Brasil, Cátia J. Neves, Tatiana Rijoff, Marta Falcão, Gonçalo Valadão, Paula A. Videira, Vanessa Ferreira
Software Mentions: 4
Published: about 5 years ago

10.3389/fimmu.2020.00829

Treated HIV Infection Alters Phenotype but Not HIV-Specific Function of Peripheral Blood Natural Killer Cells
Cited by: 8
Author(s): Nancy Q. Zhao, Anne-Maud Ferreira, Philip Grant, Susan Holmes, Catherine A. Blish
Software Mentions: 4
Published: about 6 years ago

10.1186/s12885-019-5402-1

The neoepitope landscape of breast cancer: implications for immunotherapy
Cited by: 64
Author(s): Pooja Narang, Meixuan Chen, Amit Sharma, Karen S. Anderson, Melissa A. Wilson
Software Mentions: 4
Published: over 7 years ago

10.3389/fcell.2021.694633

Bioinformatic Analyses Identify a Prognostic Autophagy-Related Long Non-coding RNA Signature Associated With Immune Microenvironment in Diffuse Gliomas
Cited by: 10
Author(s): Shengchao Xu, Lu Tang, Zhixiong Liu, Kui Yang, Quan Cheng
Software Mentions: 4
Published: about 5 years ago

10.1038/s41416-020-0799-5

A novel stratification framework for predicting outcome in patients with prostate cancer
Cited by: 8
Author(s): Bogdan A. Luca, Vincent Moulton, Christopher Ellis, Dylan R. Edwards, Colin Campbell, Rosalin Cooper, Jeremy Clark, Daniel Brewer, Christopher S. Cooper
Software Mentions: 4
Published: over 6 years ago

10.1016/j.bbih.2021.100265

Transcriptional profiling of macaque microglia reveals an evolutionary preserved gene expression program
Cited by: 4
Author(s): Marissa Dubbelaar, Chairi Misrielal, Jeffrey J. Bajramović, Saskia M. Burm, Ella A. Zuiderwijk‐Sick, Nieske Brouwer, Corien Grit, Susanne M. Kooistra, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, Hendrikus Boddeke, Bart J. L. Eggen
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-41287-x

Dry season habitat use of fishes in an Australian tropical river
Cited by: 13
Author(s): Krystle Keller, Quentin Allsop, Jayne Brim Box, Duncan J. Buckle, David A. Crook, Michael M. Douglas, Sue Jackson, Mark J. Kennard, Osmar J. Luiz, Bradley James Pusey, Simon A. Townsend, Alison J. King
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms22052481

Differential Morpho-Physiological and Transcriptomic Responses to Heat Stress in Two Blueberry Species
Cited by: 5
Author(s): Jodi B Callwood, Kalpalatha Melmaiee, Krishnanand P. Kulkarni, Amaranatha R. Vennapusa, Diarra Aicha, Michael J. Moore, Nicholi Vorsa, Purushothaman Natarajan, Umesh K. Reddy, Sathya Elavarthi
Software Mentions: 4
Published: over 5 years ago

10.1002/2211-5463.12934

Novel immune subtypes of lung adenocarcinoma identified through bioinformatic analysis
Cited by: 4
Author(s): Fanglu Qin, Zhanyu Xu, Liqiang Yuan, Wenjie Chen, Jiangbo Wei, Yu Sun, Shikang Li
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13040-014-0028-y

Synthetic learning machines
Cited by: 22
Author(s): Hemant Ishwaran, James D. Malley
Software Mentions: 4
Published: over 11 years ago

10.1093/database/baw145

Text mining resources for the life sciences
Cited by: 34
Author(s): Piotr Przybyła, Matthew Shardlow, Sophie Aubin, Robert Bossy, Richard Eckart de Castilho, Stelios Piperidis, John McNaught, Sophia Ananiadou
Software Mentions: 4
Published: over 10 years ago

10.3390/genes12091375

N6-Methyladenosine-Related lncRNA Signature Predicts the Overall Survival of Colorectal Cancer Patients
Cited by: 12
Author(s): Wei Song, Jun Ren, Wenzheng Yuan, Rensheng Xiang, Yuhang Ge, Tao Fu
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyg.2017.00429

Analyzing Dyadic Sequence Data—Research Questions and Implied Statistical Models
Cited by: 3
Author(s): Peter Fuchs, Fridtjof W. Nußbeck, Nathalie Meuwly, Guy Bodenmann
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-019-2845-y

HOME: a histogram based machine learning approach for effective identification of differentially methylated regions
Cited by: 29
Author(s): Akanksha Srivastava, Yuliya V. Karpievitch, Steven R. Eichten, Justin O. Borevitz, Ryan Lister
Software Mentions: 4
Published: about 7 years ago

10.1016/j.mex.2019.09.035

The use of classification and regression algorithms using the random forests method with presence-only data to model species’ distribution
Cited by: 17
Author(s): Lei Zhang, Falk Huettmann, Xudong Zhang, Shirong Liu, Sun Park, Zhen Yu, Chunrong Mi
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2105-14-S7-S10

NGS-Trex: Next Generation Sequencing Transcriptome profile explorer
Cited by: 13
Author(s): Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone
Software Mentions: 4
Published: over 13 years ago

10.1186/1471-2164-11-294

Consistent annotation of gene expression arrays
Cited by: 28
Author(s): Benoît Ballester, Nathan Johnson, G Proctor, Paul Flicek
Software Mentions: 4
Published: about 16 years ago

10.7554/eLife.56261

Training deep neural density estimators to identify mechanistic models of neural dynamics
Cited by: 99
Author(s): Pedro J. Gonçalves, Jan-Matthis Lueckmann, Michael Deistler, Marcel Nonnenmacher, Kaan Öcal, Giacomo Bassetto, Chaitanya Chintaluri, William F Podlaski, Sara A. Haddad, Tim P. Vogels, David S. Greenberg, Jakob H. Macke
Software Mentions: 4
Published: almost 6 years ago

10.1530/REP-19-0293

Blastocyst transfer in mice alters the placental transcriptome and growth
Cited by: 4
Author(s): Katerina Menelaou, Malwina Prater, Simon James Tunster, Georgina E T Blake, Colleen Geary Joo, James C. Cross, Russell S. Hamilton, Erica D. Watson
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4919

Performances of machine learning algorithms for mapping fractional cover of an invasive plant species in a dryland ecosystem
Cited by: 50
Author(s): Hailu Shiferaw, Woldeamlak Bewket, Sandra Eckert
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-017-1861-z

LSTrAP: efficiently combining RNA sequencing data into co-expression networks
Cited by: 33
Author(s): Sebastian Proost, Agnieszka Krawczyk
Software Mentions: 4
Published: almost 9 years ago

10.1093/jxb/erx163

The diversity of CO2-concentrating mechanisms in marine diatoms as inferred from their genetic content
Cited by: 26
Author(s): Chen Shen, Christopher L. Dupont, Brian M. Hopkinson
Software Mentions: 4
Published: about 9 years ago

10.1128/mBio.03234-19

RNA-Seq Analysis Illuminates the Early Stages of <i>Plasmodium</i> Liver Infection
Cited by: 24
Author(s): Maria Toro-Moreno, Kayla Sylvester, Tamanna Srivastava, Dora Posfai, Emily R. Derbyshire
Software Mentions: 4
Published: over 6 years ago

10.1186/s12918-018-0542-5

Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica
Cited by: 51
Author(s): Pramod Kumar Mishra, Na-Rae Lee, Meiyappan Lakshmanan, Minsuk Kim, Byung‐Gee Kim, Dong-Yup Lee
Software Mentions: 4
Published: over 8 years ago

10.1098/rspb.2016.2533

Drivers and predictions of coral reef carbonate budget trajectories
Cited by: 39
Author(s): Fraser A. Januchowski–Hartley, Nicholas A. J. Graham, Shaun K. Wilson, Simon Jennings, Chris T. Perry
Software Mentions: 4
Published: over 9 years ago

10.1186/s13059-017-1353-5

Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines
Cited by: 165
Author(s): Rajarshi Ghosh, Ninad Oak, Sharon E. Plon
Software Mentions: 4
Published: over 8 years ago

10.3390/vaccines8040709

Bacterial Immunogenicity Prediction by Machine Learning Methods
Cited by: 9
Author(s): Иван Димитров, Nevena Zaharieva, Irini Doytchinova
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.3797

Sea ice meiofauna distribution on local to pan‐Arctic scales
Cited by: 24
Author(s): Bodil A. Bluhm, Haakon Hop, Mikko Vihtakari, Rolf Gradinger, Katrin Iken, I. A. Melnikov, Janne E. Søreide
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.44279

Plant–necrotroph co-transcriptome networks illuminate a metabolic battlefield
Cited by: 42
Author(s): Wei Zhang, Jason A. Corwin, Daniel Copeland, Julie E. Feusier, Robert Eshbaugh, David E. Cook, Suzi Atwell, Daniel J. Kliebenstein
Software Mentions: 4
Published: about 7 years ago

10.1016/j.fochx.2020.100093

Genetic variation in wheat grain quality is associated with differences in the galactolipid content of flour and the gas bubble properties of dough liquor
Cited by: 8
Author(s): Byoung Koun Min, Louise J. Salt, Peter J. Wilde, Ondřej Kosík, Kirsty L. Hassall, Alexandra M. Przewieslik‐Allen, Amanda Burridge, Mervin Poole, J. W. Snape, Luzie U. Wingen, Richard P. Haslam, Simon Griffiths, Peter R. Shewry
Software Mentions: 4
Published: about 6 years ago

10.1186/s12935-020-01352-2

Co-expression network analysis identifies a gene signature as a predictive biomarker for energy metabolism in osteosarcoma
Cited by: 19
Author(s): Naiqiang Zhu, Jingyi Hou, Guiyun Ma, Shuai Guo, Chengliang Zhao, Bin Chen
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0023628

Rhythmic Diel Pattern of Gene Expression in Juvenile Maize Leaf
Cited by: 12
Author(s): Maciej Jończyk, Alicja Sobkowiak, Paweł Siedlecki, Przemysław Biecek, Joanna Trzcińska-Danielewicz, Jerzy Tiuryn, Jan Fronk, Paweł Sowiński
Software Mentions: 4
Published: almost 15 years ago

10.1038/s41598-020-65638-1

Genomic analyses of early responses to radiation in glioblastoma reveal new alterations at transcription, splicing, and translation levels
Cited by: 11
Author(s): Saket Choudhary, Suzanne Perea Burns, Hoda Mirsafian, Wenzheng Li, Dat T. Vo, Mu Qiao, Xiufen Lei, Andrew D. Smith, Luiz O. F. Penalva
Software Mentions: 4
Published: about 6 years ago

10.1093/femsec/fix126

Community structure of rare methanogenic archaea: insight from a single functional group
Cited by: 15
Author(s): Shuai Yang, Matthias Winkel, Dirk Wagner, Susanne Liebner
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-019-55852-x

Multi-parameter immune profiling of peripheral blood mononuclear cells by multiplexed single-cell mass cytometry in patients with early multiple sclerosis
Cited by: 34
Author(s): Chotima Böttcher, Camila Fernández-Zapata, Stephan Schlickeiser, Désirée Kunkel, Axel Schulz, Henrik E. Mei, Carl Weidinger, René M. Gieß, Susanna Asseyer, Britta Siegmund, Friedemann Paul, Klemens Ruprecht, Josef Priller
Software Mentions: 4
Published: over 6 years ago

10.1038/s42003-021-02674-1

Genomic characterization of rare molecular subclasses of hepatocellular carcinoma
Cited by: 4
Author(s): Jeffrey S. Damrauer, Markia A. Smith, Vonn Walter, Aatish Thennavan, Lisle E. Mose, Sara R. Selitsky, Katherine A. Hoadley
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0243911

The pharmacodynamic and differential gene expression analysis of PPAR α/δ agonist GFT505 in CDAHFD-induced NASH model
Cited by: 12
Author(s): Linfu Liu, Chuang Liu, Menglong Zhao, Qianru Zhang, Ying Lu, Ping Liu, Hua Yang, Jinliang Yang, Xiaoxin Chen, Yuqin Yao
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228933

Transcriptomic analysis to elucidate the response of honeybees (Hymenoptera: Apidae) to amitraz treatment
Cited by: 5
Author(s): Ye Liang, Peng Liu, Tengfei Shi, Wang AnRan, Yujie Zhu, Lai Li, Linsheng Yu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0217136

Diversity and relative abundance of ammonia- and nitrite-oxidizing microorganisms in the offshore Namibian hypoxic zone
Cited by: 5
Author(s): Evan Lau, Caitlin H. Frame, Edward J. Nolan, Frank J. Stewart, Zachary Dillard, Daniel Lukich, Nicole E Mihalik, Katelyn Yauch, Marcus Kinker, Samantha Waychoff
Software Mentions: 4
Published: about 7 years ago

10.3390/cancers12092510

RNA Sequencing of Hepatobiliary Cancer Cell Lines: Data and Applications to Mutational and Transcriptomic Profiling
Cited by: 4
Author(s): Dominique Scherer, Marcela Dávila López, Benjamin Goeppert, Sanna Abrahamsson, Rosa González Silos, Igor Nova, Katherine Marcelain, Juan Carlos Roa, David Ibberson, Sinan Uğur Umu, Trine B. Rounge, Stephanie Roessler, Justo Lorenzo Bermejo
Software Mentions: 4
Published: almost 6 years ago

10.3390/ijms22052276

Time-Resolved scRNA-Seq Tracks the Adaptation of a Sensitive MCL Cell Line to Ibrutinib Treatment
Cited by: 4
Author(s): Viktoria Fuhr, Ehsan Vafadarnejad, Oliver Dietrich, Panagiota Arampatzi, Angela Riedel, Antoine‐Emmanuel Saliba, Andreas Rosenwald, Hilka Rauert-Wunderlich
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-5-130

Cited by: 92
Author(s): Sook Jung, Christopher Jesudurai, Margaret Staton, Zhidian Du, Stephen P. Ficklin, Il-Hyung Cho, Albert G. Abbott, Jeffrey Tomkins, Dorrie Main
Software Mentions: 4
Published: over 22 years ago

10.1038/s41598-020-78352-9

Eight years of homicide evolution in Monterrey, Mexico: a network approach
Cited by: 1
Author(s): Rodrigo Dorantes-Gilardi, Diana García-Cortés, Hiram Hernández-Ramos, Jesús Espinal-Enríquez
Software Mentions: 4
Published: over 5 years ago

10.1002/gch2.202000044

Preparation and Evaluation of Rice Bran‐Modified Urea Formaldehyde as Environmental Friendly Wood Adhesive
Cited by: 5
Author(s): Nazrul Islam, Omar Faruk, Nasim Rana, Atanu Kumar Das, Ahsan Habib
Software Mentions: 4
Published: over 5 years ago

10.1002/cam4.1498

Establishment of a nine‐gene prognostic model for predicting overall survival of patients with endometrial carcinoma
Cited by: 13
Author(s): Jianchao Ying, Qian Wang, Teng Xu, Jianxin Lyu
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pgen.1008830

Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3′UTR intron-containing NMD targets
Cited by: 18
Author(s): Pooja Gangras, Thomas L. Gallagher, Michael A. Parthun, Zhongxia Yi, Robert D. Patton, Kiel T. Tietz, Natalie C. Deans, Ralf Bundschuh, Sharon L. Amacher, Guramrit Singh
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-34854-1

Evidences for a shared history for spectacled salamanders, haplotypes and climate
Cited by: 14
Author(s): Mattia Iannella, Paola D’Alessandro, Maurizio Biondi
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2164-9-S2-S17

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain
Cited by: 15
Author(s): Heng Huang, Nha Nguyen, S. Oraintara, An Vo
Software Mentions: 4
Published: over 18 years ago

10.1186/1471-2105-9-537

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Cited by: 28
Author(s): Fan Mo, Hong Xu, Feng Gao, Lin Du, Jun Wang, Gilbert S. Omenn, Biaoyang Lin
Software Mentions: 4
Published: over 17 years ago

10.1016/j.csbj.2020.12.040

A theoretical and generalized approach for the assessment of the sample-specific limit of detection for clinical metagenomics
Cited by: 17
Author(s): Arnt Ebinger, Susanne Fischer, Dirk W. Höper
Software Mentions: 4
Published: over 5 years ago

10.1186/s12974-021-02264-2

Systemic inflammation alters the neuroinflammatory response: a prospective clinical trial in traumatic brain injury
Cited by: 11
Author(s): Philipp Lassarén, Caroline Lindblad, Arvid Frostell, Keri L. H. Carpenter, Mathew R. Guilfoyle, Peter J. Hutchinson, Adel Helmy, Eric Peter Thelin
Software Mentions: 4
Published: almost 5 years ago

10.1128/mSystems.01114-20

Microbiota Assessments for the Identification and Confirmation of Slit Defect-Causing Bacteria in Milk and Cheddar Cheese
Cited by: 7
Author(s): Zhengyao Xue, Jason T. Brooks, Zachary Quart, Eric Stevens, Mary E. Kable, J. Heidenreich, J. W. McLeod, Maria L. Marco
Software Mentions: 4
Published: over 5 years ago

10.3390/s20092594

Recognition of Patient Groups with Sleep Related Disorders using Bio-signal Processing and Deep Learning
Cited by: 21
Author(s): Delaram Jarchi, Javier Andreu-Pérez, Mehrin Kiani, Oldřich Vyšata, Jiří Kuchyňka, Aleš Procházka, Saeid Sanei
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-29847-z

The reciprocal interplay between TNFα and the circadian clock impacts on cell proliferation and migration in Hodgkin lymphoma cells
Cited by: 26
Author(s): Marconi Abreu, Alireza Basti, Nikolaï Genov, Gianluigi Mazzoccoli, Angela Relógio
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0219652

Drone-based effective counting and ageing of hippopotamus (Hippopotamus amphibius) in the Okavango Delta in Botswana
Cited by: 16
Author(s): Victoria L. Inman, Richard T. Kingsford, Michael J. Chase, Keith E. A. Leggett
Software Mentions: 4
Published: over 6 years ago

10.1098/rsos.192146

Biological and statistical interpretation of size-at-age, mixed-effects models of growth
Cited by: 8
Author(s): Simone Vincenzi, Dušan Jeseňsek, Alain J. Crivellì
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1004604

Foxf Genes Integrate Tbx5 and Hedgehog Pathways in the Second Heart Field for Cardiac Septation
Cited by: 77
Author(s): Andrew D. Hoffmann, Xinan Yang, Ozanna Burnicka-Turek, Joshua D. Bosman, Xiaomeng Ren, Jeffrey D. Steimle, Steven A. Vokes, Andrew P. McMahon, Vladimir V. Kalinichenko, Ivan P. Moskowitz
Software Mentions: 4
Published: almost 12 years ago

10.1186/s12944-019-1142-0

LncRNA SNHG8 is identified as a key regulator of acute myocardial infarction by RNA-seq analysis
Cited by: 26
Author(s): Liuan Zhuo, Yi-Tao Wen, Yong Wang, Zhi-Fang Liang, Gang Wu, Nong Mei-dan, Miao Liu
Software Mentions: 4
Published: over 6 years ago

10.12688/f1000research.10783.2

A very simple, re-executable neuroimaging publication
Cited by: 10
Author(s): Samik Ghosh, Jean‐Baptiste Poline, David B. Keator, Yaroslav O. Halchenko, Adrian L. R. Thomas, Daniel Kessler, David N. Kennedy
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-77382-7

Warming and leaf litter functional diversity, not litter quality, drive decomposition in a freshwater ecosystem
Cited by: 13
Author(s): Gustavo H. Migliorini, Gustavo Q. Romero
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0223271

Gender linked fate explains lower legal abortion support among white married women
Cited by: 3
Author(s): Leah Ruppanner, Gosia Mikołajczak, Kelsy Kretschmer, Christopher Stout
Software Mentions: 4
Published: almost 7 years ago

10.3390/metabo11010034

Amino Acid and Acylcarnitine Levels in Chronic Patients with Schizophrenia: A Preliminary Study
Cited by: 4
Author(s): Irina A. Mednova, Alexander А. Chernonosov, Marat F. Kasakin, E. Kornetova, A. Semke, N. Bokhan, Vladimir V. Koval, Svetlana A. Ivanova
Software Mentions: 4
Published: over 5 years ago

10.1200/JCO.19.00577

Germline <i>GPR161</i> Mutations Predispose to Pediatric Medulloblastoma
Cited by: 44
Author(s): Matthias Begemann, Sebastian M. Waszak, Giles Robinson, Natalie Jäger, Tanvi Sharma, Cordula Knopp, Florian Kraft, Olga Moser, Martin Mynarek, Léa Guerrini-Rousseau, Laurence Brugières, Pascale Varlet, Torsten Pietsch, Daniel C. Bowers, Murali Chintagumpala, Felix Sahm, Jan O. Korbel, Stefan Rutkowski, Thomas Eggermann, Amar Gajjar, Paul A. Northcott, Miriam Elbracht, Stefan M. Pfister, Udo Kontny, Ingo Kurth
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-021-07889-4

Experimental Babesia rossi infection induces hemolytic, metabolic, and viral response pathways in the canine host
Cited by: 6
Author(s): Rachel Smith, Amelia Goddard, Arun K. Boddapati, Steven Brooks, Johan P. Schoeman, Justin Lack, Andrew L. Leisewitz, Hans Ackerman
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-017-07847-9

Hybridization patterns in two contact zones of grass snakes reveal a new Central European snake species
Cited by: 54
Author(s): Carolin Kindler, Maxime Chèvre, Sylvain Ursenbacher, Wolfgang Böhme, Axel Hille, Daniel Jablonski, Melita Vamberger, Uwe Fritz
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2020.588739

Temperature Shift Between Vineyards Modulates Berry Phenology and Primary Metabolism in a Varietal Collection of Wine Grapevine
Cited by: 16
Author(s): Kelem Gashu, Noga Sikron Persi, Elyashiv Drori, Eran Harcavi, Nurit Agam, Amnon Bustan, Aaron Fait
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-69078-9

Global, regional, and country seroprevalence of Toxoplasma gondii in pregnant women: a systematic review, modelling and meta-analysis
Cited by: 75
Author(s): Jean Joël Bigna, Joël Noutakdie Tochie, Dahlia Noëlle Tounouga, Anne Olive Bekolo, Nadia S. Ymele, Emilie Lettitia Youda, Paule Sandra D. Sime, Jobert Richie Nansseu
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0084222

Next-Generation Invaders? Hotspots for Naturalised Sleeper Weeds in Australia under Future Climates
Cited by: 31
Author(s): Daisy Englert Duursma, Rachael V. Gallagher, Erin Roger, Lesley Hughes, Paul Downey, Michelle R. Leishman
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0044185

Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics
Cited by: 23
Author(s): Alessandro Coppe, Stefania Bortoluzzi, Giulia Murari, Ilaria A. M. Marino, Lorenzo Zane, Chiara Papetti
Software Mentions: 4
Published: almost 14 years ago

10.1371/journal.pone.0129350

Multiplexing of ChIP-Seq Samples in an Optimized Experimental Condition Has Minimal Impact on Peak Detection
Cited by: 0
Author(s): Thadeous J. Kacmarczyk, Caitlin Bourque, Xihui Zhang, Yanwen Jiang, Yariv Houvras, Alicia Alonso, Doron Betel
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-018-33671-w

Disentangling direct and indirect effects of water availability, vegetation, and topography on avian diversity
Cited by: 12
Author(s): Vladimír Remeš, Lenka Harmáčková
Software Mentions: 4
Published: almost 8 years ago

10.1167/jov.20.7.18

How familiarity warps representation in the face space
Cited by: 6
Author(s): Vassiki Chauhan, Ilona Kotlewska, Sunny Tang, M. Ida Gobbini
Software Mentions: 4
Published: about 6 years ago

10.3390/metabo11080533

Kidney Allograft Function Is a Confounder of Urine Metabolite Profiles in Kidney Allograft Recipients
Cited by: 4
Author(s): Karsten Suhre, Darshana Dadhania, John Richard Lee, Thangamani Muthukumar, Justin Chen, Steven S. Gross, Manikkam Suthanthiran
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0085555

Mapping Reef Fish and the Seascape: Using Acoustics and Spatial Modeling to Guide Coastal Management
Cited by: 36
Author(s): Bryan Costa, James C. Taylor, Laura M. Kracker, Timothy Adams Battista, Simon J. Pittman
Software Mentions: 4
Published: over 12 years ago

10.1186/1471-2164-11-432

Bcheck: a wrapper tool for detecting RNase P RNA genes
Cited by: 24
Author(s): Dilmurat Yusuf, Manja Marz, Peter F. Stadler, Ivo L. Hofacker
Software Mentions: 4
Published: about 16 years ago

10.1111/1755-0998.12956

Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring
Cited by: 48
Author(s): Andjin Siegenthaler, Owen S. Wangensteen, Ana Z. Soto, Chiara Benvenuto, Laura Corrigan, Stefano Mariani
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0214483

Cross-continental phylogeography of two Holarctic Nymphalid butterflies, Boloria eunomia and Boloria selene
Cited by: 19
Author(s): Jana Marešová, Jan Christian Habel, Gabriel Nève, Marcin Sielezniew, Alena Sucháčková Bartoňová, Agata Kostro‐Ambroziak, Zdeněk Faltýnek Fric
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0228094

Human and climatic drivers affect spatial fishing patterns in a multiple-use marine protected area: The Galapagos Marine Reserve
Cited by: 14
Author(s): Mauricio Castrejón, Anthony Charles
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-80093-8

An enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
Cited by: 20
Author(s): Manjot S Virdee, Nipun Saini, Colin D. Kay, Andrew P. Neilson, Sze Ting Cecilia Kwan, Kaylee K. Helfrich, Sandra M. Mooney, Susan Smith
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0138022

Structure Based Thermostability Prediction Models for Protein Single Point Mutations with Machine Learning Tools
Cited by: 66
Author(s): Lei Jia, Ramya Yarlagadda, Charles C. Reed
Software Mentions: 4
Published: almost 11 years ago

10.3390/microorganisms8091267

Investigating Both Mucosal Immunity and Microbiota in Response to Gut Enteritis in Yellowtail Kingfish
Cited by: 17
Author(s): Thibault Philippe Raymond Albert Legrand, James W. Wynne, Laura S. Weyrich, Alan Oxley
Software Mentions: 4
Published: almost 6 years ago

10.3390/s21041456

Web AR Solution for UAV Pilot Training and Usability Testing
Cited by: 10
Author(s): Roberto Ribeiro, João Ramos, David Safadinho, Arsénio Reis, Carlos Rabadão, João Barroso, António Pereira
Software Mentions: 4
Published: over 5 years ago

10.1186/s13041-020-00623-3

Differentiation and localization of interneurons in the developing spinal cord depends on DOT1L expression
Cited by: 6
Author(s): Angelica Gray de Cristoforis, Francesco Ferrari, Frédéric Clotman, Tanja Vogel
Software Mentions: 4
Published: about 6 years ago

10.7717/peerj.6970

Detection of condition-specific marker genes from RNA-seq data with MGFR
Cited by: 8
Author(s): Khadija El Amrani, Gregorio Alanis-Lobato, Nancy Mah, Armin Kurtz, Miguel A. Andrade‐Navarro
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0213426

Human traffic and habitat complexity are strong predictors for the distribution of a declining amphibian
Cited by: 7
Author(s): R. J. Anderson
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-75088-4

Disentangling etiologies of CNS infections in Singapore using multiple correspondence analysis and random forest
Cited by: 5
Author(s): Raphaël M. Zellweger, Sophie Yacoub, Yvonne Chan, Derek Soon, Humaira Shafi, Say Tat Ooi, Mónica Chan, Leslie Jacobson, October M. Sessions, Angela Vincent, Jenny Guek Hong Low, Eng Eong Ooi, Lin‐Fa Wang, Limin Wijaya, Kevin Tan, Singapore Neurologic Infections Program
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0229687

Expanding radiogenic strontium isotope baseline data for central Mexican paleomobility studies
Cited by: 16
Author(s): Sofía I. Pacheco‐Forés, Gwyneth W. Gordon, Kelly J. Knudson
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-019-2977-0

RESCUE: imputing dropout events in single-cell RNA-sequencing data
Cited by: 26
Author(s): Sam Tracy, Guo‐Cheng Yuan, Ruben Dries
Software Mentions: 4
Published: about 7 years ago

10.1038/s41418-020-00733-4

Control of replication stress and mitosis in colorectal cancer stem cells through the interplay of PARP1, MRE11 and RAD51
Cited by: 18
Author(s): Gwenola Manic, Martina Musella, Francesca Corradi, Antonella Sistigu, Sara Vitale, Sara Soliman Abdel Rehim, Luca Mattiello, Eva Malacaria, Claudia Galassi, Michele Signore, Matteo Pallocca, Stefano Scalera, Frauke Goeman, Francesca De Nicola, Andrea Guarracino, Rosa Pennisi, Fabrizio Antonangeli, Francesca Sperati, Marta Baiocchi, Mauro Biffoni, Maurizio Fanciulli, Marcello Maugeri‐Saccà, Annapaola Franchitto, Pietro Pichierri, Ruggero De Maria, Ilio Vitale
Software Mentions: 4
Published: over 5 years ago

10.1016/j.molmet.2018.09.011

Regulation of glucose uptake and inflammation markers by FOXO1 and FOXO3 in skeletal muscle
Cited by: 35
Author(s): Lars Lundell, Julie Massart, Ali Altıntaş, Anna Krook, Juleen R. Zierath
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0198884

Detecting opinion spams through supervised boosting approach
Cited by: 20
Author(s): Mohamad Hazim, Nor Badrul Anuar, Mohd Faizal Ab Razak, Nor Aniza Abdullah
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2020.616875

Curing of Cocoa Beans: Fine-Scale Monitoring of the Starter Cultures Applied and Metabolomics of the Fermentation and Drying Steps
Cited by: 19
Author(s): Cristian Díaz-Muñoz, Dario Van de Voorde, Andrea Comasio, Marko Verce, Carlos Eduardo Hernandez, Stefan Weckx, Luc De Vuyst
Software Mentions: 4
Published: over 5 years ago