10.1074/mcp.RA118.000877

Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome*
Cited by: 86
Author(s): Roman Mylonas, Ilan Beer, Christian Iseli, Chloé Chong, Hui Song Pak, David Gfeller, George Coukos, Ioannis Xénarios, Markus Müller, Michal Bassani-Sternberg
Software Mentions: 4
Published: over 7 years ago

10.1093/database/baw168

KTCNlncDB—a first platform to investigate lncRNAs expressed in human keratoconus and non-keratoconus corneas
Cited by: 13
Author(s): Michał Wojciech Szcześniak, Michał Kabza, Justyna A. Karolak, Małgorzata Rydzanicz, Dorota Nowak, Barbara Ginter-Matuszewska, Piotr Polakowski, Rafał Płoski, Jacek P. Szaflik, Marzena Gajęcka
Software Mentions: 4
Published: over 9 years ago

10.1111/evo.13865

Altitude and life‐history shape the evolution of<i>Heliconius</i>wings
Cited by: 25
Author(s): Gabriela Montejo‐Kovacevich, Jennifer E. Smith, Joana I. Meier, Caroline Bacquet, Eva Whiltshire-Romero, Nicola J. Nadeau, Chris D. Jiggins
Software Mentions: 4
Published: over 6 years ago

10.1534/g3.119.400070

Long-Term Conservation of Ohnologs Through Partial Tetrasomy Following Whole-Genome Duplication in Salmonidae
Cited by: 24
Author(s): Matthew A. Campbell, Matthew C. Hale, Garrett J. McKinney, Krista M. Nichols, Devon E. Pearse
Software Mentions: 4
Published: about 7 years ago

10.3389/fpls.2017.00963

Recent Genetic Gains in Nitrogen Use Efficiency in Oilseed Rape
Cited by: 33
Author(s): Andreas Stahl, Mara Pfeifer, Matthias Frisch, Benjamin Wittkop, Rod J. Snowdon
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-020-79619-x

Identification of loci associated with susceptibility to bovine paratuberculosis and with the dysregulation of the MECOM, eEF1A2, and U1 spliceosomal RNA expression
Cited by: 9
Author(s): María Canive, Nora Fernández-Jiménez, Rosa Casáis, Patricia Vázquez, José L. Lavín, José Ramón Bilbao, Cristina Blanco‐Vázquez, Joseba M. Garrido, Ramón A. Juste, Marta Alonso‐Hearn
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms19103265

Distinct Signatures of Host Defense Suppression by Plant-Feeding Mites
Cited by: 19
Author(s): Bernardus C. J. Schimmel, Juan M. Alba, Nicky Wybouw, Joris J. Glas, Tomas Meijer, Robert C. Schuurink, Merijn R. Kant
Software Mentions: 4
Published: almost 8 years ago

10.1002/ece3.5071

Space use and social association in a gregarious ungulate: Testing the conspecific attraction and resource dispersion hypotheses
Cited by: 36
Author(s): Mélissa Peignier, Quinn M. R. Webber, Erin L. Koen, Michel P. Laforge, Alec L. Robitaille, Eric Vander Wal
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.119.400294

Open Chromatin Profiling in Adipose Tissue Marks Genomic Regions with Functional Roles in Cardiometabolic Traits
Cited by: 18
Author(s): Maren E. Cannon, Kevin W. Currin, Kristin L. Young, Hannah J. Perrin, Swarooparani Vadlamudi, Alexias Safi, Lingyun Song, Ying Wu, Martin Wabitsch, Markku Laakso, Gregory E. Crawford, Karen L. Mohlke
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.6946

Genomic analysis of Asian honeybee populations in China reveals evolutionary relationships and adaptation to abiotic stress
Cited by: 6
Author(s): Peng Shi, Jun Zhou, Huali Song, Yujuan Wu, Lan Lan, Xiangyou Tang, Zhengang Ma, Charles R. Vossbrinck, Bettina Vossbrinck, Zeyang Zhou, Jianlong Xu
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-018-2555-x

Protein complexes identification based on go attributed network embedding
Cited by: 21
Author(s): Bo Xu, Kun Li, Wei Zheng, Xiaoxia Liu, Yijia Zhang, Zhehuan Zhao, Zengyou He
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0172605

The distinct features of microbial ‘dysbiosis’ of Crohn’s disease do not occur to the same extent in their unaffected, genetically-linked kindred
Cited by: 28
Author(s): Umer Zeeshan Ijaz, Christopher Quince, Laura Hanske, Nicholas J. Loman, Szymon T. Calus, Martin Bertz, Christine Edwards, Daniel R. Gaya, Richard Hansen, Paraic McGrogan, Richard K. Russell, Konstantinos Gerasimidis
Software Mentions: 4
Published: over 9 years ago

10.3389/fpls.2021.617815

Transgenerational Plasticity in Flower Color Induced by Caterpillars
Cited by: 11
Author(s): Mar Sobral, Isabelle P. Neylan, Eduardo Narbona, Rodolfo Dirzo
Software Mentions: 4
Published: over 5 years ago

10.1186/1472-6947-11-31

PKreport: report generation for checking population pharmacokinetic model assumptions
Cited by: 6
Author(s): Xiaoyong Sun, Jun Li
Software Mentions: 4
Published: about 15 years ago

10.1186/s40793-019-0346-2

Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease
Cited by: 20
Author(s): Viviane Radl, Jana Barbro Winkler, Susanne Kublik, Luhua Yang, Traud Winkelmann, Gisle Vestergaard, Peter Schröder, Michael Schloter
Software Mentions: 4
Published: over 6 years ago

10.7717/peerj.2681

RGFA: powerful and convenient handling of assembly graphs
Cited by: 5
Author(s): Giorgio Gonnella, Stefan Kurtz
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2164-14-665

Comparison of RNA- or LNA-hybrid oligonucleotides in template-switching reactions for high-speed sequencing library preparation
Cited by: 23
Author(s): Matthias Harbers, Sachi Kato, Michiel de Hoon, Yoshihide Hayashizaki, Piero Carninci, Charles Plessy
Software Mentions: 4
Published: almost 13 years ago

10.1002/ece3.7867

Growth, body condition and contest performance after early‐life food restriction in a long‐lived tropical fish
Cited by: 3
Author(s): Angelika Ziegelbecker, Kristina M. Sefc
Software Mentions: 4
Published: about 5 years ago

10.1093/beheco/arab027

Early life experience influences dispersal in coyotes (<i>Canis latrans</i>)
Cited by: 10
Author(s): Emily Zepeda, Eric Payne, Ashley M. Wurth, Andrew Sih, Stanley D. Gehrt
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6635

Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation
Cited by: 4
Author(s): Laurence Humeau, Matthieu Le Corre, Stuart F. Reynolds, Colin P. Wearn, Janos C. Hennicke, James C. Russell, Yann Gomard, Hélène Magalon, Patrick Pinet, Pauline Gélin, François Xavier Couzi, E. Bemanaja, Vikash Tatayah, Ousseni Bacar, Gérard Rocamora, Patrick Talbot, Nirmal Shah, Leandro Bugoni, Denis Da Silva, A. Jaeger
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0234219

No fruits without color: Cross-modal priming and EEG reveal different roles for different features across semantic categories
Cited by: 1
Author(s): Georgette Argiris, Raffaella I. Rumiati, Davide Crepaldi
Software Mentions: 4
Published: over 5 years ago

10.12688/f1000research.20233.1

A Sequence Distance Graph framework for genome assembly and analysis
Cited by: 3
Author(s): Luis Yanes, Gonzalo Garcia Accinelli, Jonathan Wright, Ben J. Ward, Bernardo Clavijo
Software Mentions: 4
Published: almost 7 years ago

10.1111/eva.12338

Whole genome sequencing shows sleeping sickness relapse is due to parasite regrowth and not reinfection
Cited by: 11
Author(s): Joshua B. Richardson, Benjamin R. Evans, Pati Patient Pyana, Nick Van Reet, Mark Sistrom, P. Büscher, Serap Aksoy, Adalgisa Caccone
Software Mentions: 4
Published: over 10 years ago

10.3389/fpls.2018.00322

Genetic and Developmental Basis for Increased Leaf Thickness in the Arabidopsis Cvi Ecotype
Cited by: 21
Author(s): Viktoriya Coneva, Daniel H. Chitwood
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-40883-1

Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Cited by: 13
Author(s): Jonna Teikari, Rafael Vicentini Popin, Songjun Hou, Matti Wahlsten, Wolfgang R. Hess, Kaarina Sivonen
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.8917

Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma
Cited by: 131
Author(s): Ikhlak Ahmed, Thasni Karedath, Simeon Andrews, Iman K. Al-Azwani, Yasmin Ali Mohamoud, Denis Querleu, Arash Rafii, Joel A. Malek
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-021-92053-x

Jejunal mucosa proteomics unravel metabolic adaptive processes to mild chronic heat stress in dairy cows
Cited by: 11
Author(s): Franziska Koch, Dirk Albrecht, Solvig Görs, Björn Kuhla
Software Mentions: 4
Published: about 5 years ago

10.1186/s12920-020-00757-2

Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma
Cited by: 40
Author(s): Arash Poursheikhani, Mohammad Reza Abbaszadegan, Negin Nokhandani, Mohammad Amin Kerachian
Software Mentions: 4
Published: about 6 years ago

10.2196/14861

An Internet-Based Psychological Intervention With a Serious Game to Improve Vitality, Psychological and Physical Condition, and Immune Function in Healthy Male Adults: Randomized Controlled Trial
Cited by: 3
Author(s): Lemmy Schakel, Dieuwke S. Veldhuijzen, Henriët van Middendorp, Corine Prins, Anne M H F Drittij, Frank Vrieling, Leo G. Visser, Tom H. M. Ottenhoff, Simone A. Joosten, Andrea Evers
Software Mentions: 4
Published: about 6 years ago

10.3389/fgene.2021.690509

Identification and Validation of a Ferroptosis-Related Long Non-coding RNA Signature for Predicting the Outcome of Lung Adenocarcinoma
Cited by: 27
Author(s): Zhiyuan Zheng, Qian Zhang, Wei Wu, Yu Xue, Shuhan Liu, Qiaoqian Chen, Lin Dong
Software Mentions: 4
Published: about 5 years ago

10.3389/fneur.2021.682535

New-Onset Postoperative Seizures in Patients With Diffuse Gliomas: A Risk Assessment Analysis
Cited by: 3
Author(s): Lianwang Li, Guanzhang Li, Fang Sun, Kenan Zhang, Ruoyu Huang, Yinyan Wang, Chuanbao Zhang, Yiming Li, Wei Zhang, Zhong Zhang, Jin Wei Qiang, Dabiao Zhou, Xing Fan, Tao Jiang
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2016.01651

Modeling the Morphometric Evolution of the Maize Shoot Apical Meristem
Cited by: 10
Author(s): Samuel Leiboff, Christopher K. DeAllie, Michael J. Scanlon
Software Mentions: 4
Published: over 9 years ago

10.3390/molecules25102353

Sexual Dimorphism in Energy Metabolism of Wistar Rats Using Data Analysis
Cited by: 12
Author(s): Andrea Leškaničová, Olga Chovancova, Marián Babinčák, Ľudmila Verbóová, Zuzana Benetinová, Denisa Maceková, Jozef Kostolny, B Smajda, Terézia Kisková
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-43792-5

Territory location and quality, together with climate, affect the timing of breeding in the white-throated dipper
Cited by: 5
Author(s): Anna Nilsson, Tore Slagsvold, Ole Wiggo Røstad, Eirunn Knudsen, Kurt Jerstad, Luis Cadahía, Trond Reitan, Morten Helberg, Bjørn Walseng, Nils Christian Stenseth
Software Mentions: 4
Published: about 7 years ago

10.1186/s12983-018-0255-z

Raven food calls indicate sender’s age and sex
Cited by: 10
Author(s): Markus Boeckle, Georgine Szipl, Thomas Bugnyar
Software Mentions: 4
Published: over 8 years ago

10.1038/s42003-021-01823-w

Shared associations identify causal relationships between gene expression and immune cell phenotypes
Cited by: 2
Author(s): Christiane Gasperi, Sung Chun, Shamil Sunyaev, Chris Cotsapas
Software Mentions: 4
Published: over 5 years ago

10.1111/evo.13212

Polygamy slows down population divergence in shorebirds
Cited by: 32
Author(s): Josephine D’Urban Jackson, Natalie dos Remedios, Kathryn H. Maher, Sama Zefania, Susan M. Haig, Sara J. Oyler‐McCance, Donald Blomqvist, Terry Burke, Michael William Bruford, Tamás Székely, Clemens Küpper
Software Mentions: 4
Published: over 9 years ago

10.1080/07853890.2020.1858234

Increased expression of hypoxia-induced factor 1α mRNA and its related genes in myeloid blood cells from critically ill COVID-19 patients
Cited by: 40
Author(s): Keiko Taniguchi‐Ponciano, Eduardo Vadillo, Héctor Mayani, César González-Bonilla, Javier Torres, Abraham Majluf, Guillermo Flores‐Padilla, Niels H. Wacher, Juan Carlos Galán, Eduardo Ferat‐Osorio, Francisco Blanco-Favéla, Constantino López-Macı́as, Aldo Ferreira‐Hermosillo, Claudia Ramírez‐Rentería, Eduardo Peña-Martínez, Gloria Silva-Román, Sandra Vela-Patiño, Carlos Mata-Lozano, Roberto Carvente-Garcia, Lourdes Basurto-Acevedo, Renata Saucedo, Patricia Piña‐Sánchez, Antonieta Chávez‐González, Daniel Marrero‐Rodríguez, Moisés Mercado
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.676326

Genomic Selection in an Outcrossing Autotetraploid Fruit Crop: Lessons From Blueberry Breeding
Cited by: 18
Author(s): Luís Felipe Ventorim Ferrão, Rodrigo R. Amadeu, Juliana Benevenuto, Ivone de Bem Oliveira, Patricio Muñoz
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2021.660658

Substrate Type Influences the Structure of Epiphyte Communities and the Growth of Posidonia oceanica Seedlings
Cited by: 1
Author(s): Davide De Battisti, Elena Balestri, G. Pardi, Virginia Menicagli, Claudio Lardicci
Software Mentions: 4
Published: about 5 years ago

10.1093/hmg/ddab140

Human photoreceptor cells from different macular subregions have distinct transcriptional profiles
Cited by: 15
Author(s): Andrew P. Voigt, Nathaniel K. Mullin, S. Scott Whitmore, Adam P. DeLuca, Erin R Burnight, Xiuying Liu, Budd A. Tucker, Todd E. Scheetz, Edwin M Stone, Robert F. Mullins
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-015-1704-0

A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells
Cited by: 6
Author(s): Juan González-Vallinas, Amadís Pagès, Babita Singh, Eduardo Eyras
Software Mentions: 4
Published: about 11 years ago

10.1242/dev.175265

A gene expression atlas of embryonic neurogenesis in <i>Drosophila</i> reveals complex spatiotemporal regulation of lncRNAs
Cited by: 21
Author(s): Alexandra L. McCorkindale, Philipp Wahle, Irwin Jungreis, Peter Menzel, Chinmay Shukla, Rúben Lopes Pereira Abreu, Rafael A. Irizarry, Irmtraud M. Meyer, M Kellis, Robert P. Zinzen
Software Mentions: 4
Published: over 7 years ago

10.3389/fneur.2021.576382

Potential Molecular Mechanism of TNF Superfamily-Related Genes in Glioblastoma Multiforme Based on Transcriptome and Epigenome
Cited by: 6
Author(s): Hui Xie, Ce Yuan, Jinjiang Li, Zhaoyang Li, Wei-Cheng Lu
Software Mentions: 4
Published: over 5 years ago

10.1038/srep30115

Genomic content typifying a prevalent clade of bovine mastitis-associated Escherichia coli
Cited by: 39
Author(s): Robert Goldstone, Susan R. Harris, David George Emslie Smith
Software Mentions: 4
Published: about 10 years ago

10.1007/s00401-020-02217-8

Extrinsic immune cell-derived, but not intrinsic oligodendroglial factors contribute to oligodendroglial differentiation block in multiple sclerosis
Cited by: 47
Author(s): Laura Starost, Maren Lindner, Martin Herold, Yu Xu, Hannes C.A. Drexler, Katharina Heß, Marc Ehrlich, Linda Ottoboni, Francesca Ruffini, Martin Stehling, Albrecht Röpke, Christian Thomas, Hans R. Schöler, Jack Antel, Jürgen Winkler, Gianvito Martino, Luisa Klotz, Tanja Kuhlmann
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13072-020-00368-2

Chromatin accessibility dynamics of Chlamydia-infected epithelial cells
Cited by: 4
Author(s): Regan J. Hayward, J. Wallis Marsh, Michael S. Humphrys, Wilhelmina M. Huston, Garry S. A. Myers
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-017-1897-0

Identification of streptococcal small RNAs that are putative targets of RNase III through bioinformatics analysis of RNA sequencing data
Cited by: 6
Author(s): Ethan Rath, Stephanie Pitman, Kyu Hong Cho, Yongsheng Bai
Software Mentions: 4
Published: over 8 years ago

10.1186/s41065-020-00124-2

ggroups: an R package for pedigree and genetic groups data
Cited by: 3
Author(s): Mohammad Ali Nilforooshan, Luis Antonio Saavedra-Jiménez
Software Mentions: 4
Published: about 6 years ago

10.7554/eLife.29156

Major transcriptional changes observed in the Fulani, an ethnic group less susceptible to malaria
Cited by: 33
Author(s): Jaclyn Quin, Ioana Bujila, Mariama Chérif, Guillaume S. Sanou, Ying Qu, Manijeh Vafa Homann, Anna Rolicka, Sodiomon B. Sirima, Mary A. O’Connell, Andreas Lennartsson, Marita Troye‐Blomberg, Issa Nébié, Ann‐Kristin Östlund Farrants
Software Mentions: 4
Published: almost 9 years ago

10.1038/sdata.2018.255

Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogramming
Cited by: 16
Author(s): Zhonghua Du, Lin Jia, Yichen Wang, Cong Wang, Wei Xue, Jingcheng Chen, Yanbo Zhu, Dehai Yu, Lei Zhou, Naifei Chen, Shilin Zhang, Ilkay Celik, Ferhat Ay, Sujun Gao, Songling Zhang, Wei Li, Andrew R. Hoffman, Jiuwei Cui
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-98534-3

Cellular, molecular, and therapeutic characterization of pilocarpine-induced temporal lobe epilepsy
Cited by: 4
Author(s): Nicholas Henkel, Marissa A. Smail, Xiaojun Wu, Heather A. Enright, Nicholas O. Fischer, Hunter M. Eby, Robert E. McCullumsmith, Rammohan Shukla
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-52957-1

Effects of human-made resource hotspots on seasonal spatial strategies by a desert pitviper
Cited by: 5
Author(s): Dominic L. DeSantis, Amy Wagler, Vicente Mata‐Silva, Jerry D. Johnson
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1008789

Detection of gene cis-regulatory element perturbations in single-cell transcriptomes
Cited by: 0
Author(s): Grace Hui Ting Yeo, Oscar Juez, Qing Chen, Budhaditya Banerjee, Lendy Chu, Max W. Shen, May Sabry, Ive Logister, Richard I. Sherwood, David K. Gifford
Software Mentions: 4
Published: over 5 years ago

10.1098/rsos.170720

Space partitioning in wild, non-territorial mountain gorillas: the impact of food and neighbours
Cited by: 32
Author(s): Nicole Seiler, Christophe Boesch, Roger Mundry, Colleen R. Stephens, Martha M. Robbins
Software Mentions: 4
Published: over 8 years ago

10.1111/eva.13142

Transcriptional frontloading contributes to cross‐tolerance between stressors
Cited by: 8
Author(s): Michael T. Collins, Melody S. Clark, John I. Spicer, Manuela Truebano
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1009466

activin-2 is required for regeneration of polarity on the planarian anterior-posterior axis
Cited by: 13
Author(s): Jennifer Cloutier, Conor L. McMann, Isaac M. Oderberg, Peter W. Reddien
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2020.00082

Pod Dehiscence in Hairy Vetch (Vicia villosa Roth)
Cited by: 16
Author(s): Lisa Kissing Kucek, Heathcliffe Riday, Bryce P. Rufener, Allen N. Burke, Sarah Seehaver Eagen, Nancy Ehlke, Sarah Krogman, Steven B. Mirsky, S. Chris Reberg‐Horton, Matthew R. Ryan, Sandra Wayman, Nick P. Wiering
Software Mentions: 4
Published: over 6 years ago

10.1186/s12870-017-1108-1

Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription
Cited by: 17
Author(s): Cristian Forestan, Silvia Farinati, Riccardo Aiese Cigliano, Alice Lunardon, Walter Sanseverino, Serena Varotto
Software Mentions: 4
Published: almost 9 years ago

10.3390/cancers12092466

Expression Profiling of Extracellular Matrix Genes Reveals Global and Entity-Specific Characteristics in Adenoid Cystic, Mucoepidermoid and Salivary Duct Carcinomas
Cited by: 16
Author(s): Christoph Arolt, Moritz Meyer, Franziska Hoffmann, Svenja Wagener‐Ryczek, David Schwarz, Lisa Nachtsheim, Dirk Beutner, Margarete Odenthal, Orlando Guntinas‐Lichius, Reinhard Buettner, Ferdinand von Eggeling, Jens Peter Klußmann, Alexander Quaas
Software Mentions: 4
Published: almost 6 years ago

10.3390/genes11070789

Transcriptional Profiling of Normal, Stenotic, and Regurgitant Human Aortic Valves
Cited by: 13
Author(s): Christina L. Greene, Kevin J Jaatinen, Hanjay Wang, Tiffany Koyano, Mary Sheridan Bilbao, Y. Joseph Woo
Software Mentions: 4
Published: about 6 years ago

10.1186/s12870-020-2275-z

Conserved defense responses between maize and sorghum to Exserohilum turcicum
Cited by: 10
Author(s): Xiaoyue Zhang, Samuel B. Fernandes, Christopher Kaiser, Pragya Adhikari, Patrick J. Brown, Santiago X. Mideros, Tiffany M. Jamann
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pgen.1003997

Comprehensive Analysis of Transcriptome Variation Uncovers Known and Novel Driver Events in T-Cell Acute Lymphoblastic Leukemia
Cited by: 110
Author(s): Zeynep Kalender Atak, Valentina Gianfelici, Gert Hulselmans, Kim De Keersmaecker, Arun George Devasia, Ellen Geerdens, Nele Mentens, Sabina Chiaretti, Kaat Durinck, Anne Uyttebroeck, Peter Vandenberghe, Iwona Włodarska, Jacqueline Cloos, Robin Foà, Franki Speleman, Jan Cools, Stein Aerts
Software Mentions: 4
Published: over 12 years ago

10.3390/genes11090983

MicroRNAs Modulate the Pathogenesis of Alzheimer’s Disease: An In Silico Analysis in the Human Brain
Cited by: 12
Author(s): Agnese Gugliandolo, Luigi Chiricosta, Virginia Boccardi, Patrizia Mecocci, Placido Bramantı, Emanuela Mazzon
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1009578

Functional-genomic analysis reveals intraspecies diversification of antiviral receptor transporter proteins in Xenopus laevis
Cited by: 1
Author(s): Ian N. Boys, Katrina B. Mar, John W. Schoggins
Software Mentions: 4
Published: about 5 years ago

10.1007/s00122-021-03798-y

Quantitative trait locus mapping combined with variant and transcriptome analyses identifies a cluster of gene candidates underlying the variation in leaf wax between upland and lowland switchgrass ecotypes
Cited by: 8
Author(s): Peng Qi, Thomas H. Pendergast, Alexander Johnson, Bochra Amina Bahri, So‐Yeon Choi, Ali Missaoui, Katrien M. Devos
Software Mentions: 4
Published: over 5 years ago

10.3390/metabo10060218

Age-Dependent Metabolic Profiles Unravel the Metabolic Relationships within and between Flax Leaves (Linum usitatissimum)
Cited by: 10
Author(s): Nicole Pontarin, Roland Molinié, David Mathiron, Job Tchoumtchoua, Solène Bassard, David Gagneul, Benjamin Thiombiano, Hervé Demailly, Jean-Xavier Fontaine, Xavier Guillot, Vivien Sarazin, Anthony Quéro, François Mesnard
Software Mentions: 4
Published: about 6 years ago

10.1038/s12276-020-00538-y

Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer
Cited by: 39
Author(s): Hye Hyeon Eum, Minsuk Kwon, Daeun Ryu, Areum Jo, Wingyan Chung, Nayoung Kim, Yourae Hong, Dae‐Soon Son, Seung Tae Kim, Jeeyun Lee, Hae‐Ock Lee, Woong-Yang Park
Software Mentions: 4
Published: over 5 years ago

10.1242/dmm.042713

Leptin and fractalkine: Novel subcutaneous cytokines in burn injury
Cited by: 4
Author(s): Dominic Friston, Sini Junttila, Júlia Borges Paes Lemes, Helen Laycock, Jose Vicente Torres-Pérez, Elizabeth J. Want, Attila Gyenesei, I. Nagy
Software Mentions: 4
Published: over 6 years ago

10.1016/j.isci.2021.102783

AMPK activation reverts mouse epiblast stem cells to naive state
Cited by: 4
Author(s): Yajing Liu, Junko Yamane, Akito Tanaka, Wataru Fujibuchi, Jun Yamashita
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.6299

Interspecific comparison of the fecal microbiota structure in three Arctic migratory bird species
Cited by: 13
Author(s): Hyunjun Cho, Won Young Lee
Software Mentions: 4
Published: about 6 years ago

10.1093/iob/obab024

Increasing Viscosity Helps Explain Locomotor Control in Swimming <i>Polypterus senegalus</i>
Cited by: 7
Author(s): Keegan Lutek, Emily M. Standen
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2016.02125

Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System
Cited by: 36
Author(s): Aaron A. Best, Amanda Porter, Susan M. Fraley, Gregory S. Fraley
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-018-25777-y

Common drivers of seasonal movements on the migration – residency behavior continuum in a large herbivore
Cited by: 18
Author(s): Jodie Martin, Vincent Tolon, Nicolas Morellet, Hugues Santin‐Janin, Alain Licoppe, Claude Fischer, Jérôme Bombois, Patrick Patthey, Elias Pesenti, Delphine Chenesseau, Sonia Saı̈d
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2018.03183

Iron Regulation in Clostridioides difficile
Cited by: 42
Author(s): Mareike Berges, Annika-Marisa Michel, Christian Lassek, Aaron M. Nuss, Michael Beckstette, Petra Dersch, Katharina Riedel, Susanne Sievers, Dörte Becher, Andreas Otto, Sandra Maaß, Manfred Rohde, Denitsa Eckweiler, José Manuel Borrero‐de Acuña, Martina Jahn, Meina Neumann‐Schaal, Dieter Jahn
Software Mentions: 4
Published: over 7 years ago

10.1002/jbm4.10496

Single‐Cell <scp>RNA</scp>‐Sequencing Reveals the Breadth of Osteoblast Heterogeneity
Cited by: 11
Author(s): Hirotaka Yoshioka, Saki Okita, Masashi Nakano, Takeshi Minamizaki, Asako Nubukiyo, Yusuke Sotomaru, Edith Bonnelye, Katsuyuki Kozai, Kotaro Tanimoto, Jane E. Aubin, Yuji Yoshiko
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2019.00861

Sample Processing Methods Impacts on Rumen Microbiome
Cited by: 10
Author(s): Gonzalo Martínez Fernández, Stuart E. Denman, Christopher S. McSweeney
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-01179-4

Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress
Cited by: 42
Author(s): Mélanie Hillion, Jörg Bernhardt, Tobias Busche, Martina Rossius, Sandra Maaß, Dörte Becher, Mamta Rawat, Markus Wirtz, Rüdiger Hell, Christian Rückert, Jörn Kalinowski, Haike Antelmann
Software Mentions: 4
Published: over 9 years ago

10.1038/s41398-017-0050-1

Gene expression associated with PTSD in World Trade Center responders: An RNA sequencing study
Cited by: 56
Author(s): Pei‐Fen Kuan, Monika A. Waszczuk, Roman Kotov, Sean Clouston, Xiaohua Yang, Prashant Singh, Sean T. Glenn, Eduardo Cortes Gomez, Jianmin Wang, Evelyn J. Bromet, Benjamin J. Luft
Software Mentions: 4
Published: over 8 years ago

10.1093/molbev/msab096

Novelty and Convergence in Adaptation to Whole Genome Duplication
Cited by: 20
Author(s): Magdalena Bohutínská, Mark Alston, Patrick J. Monnahan, Terezie Mandáková, Sian Bray, Pirita Paajanen, Filip Kolář, Levi Yant
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-15803-w

Sociospatial structure explains marked variation in brucellosis seroprevalence in an Alpine ibex population
Cited by: 22
Author(s): Pascal Marchand, Pauline Freycon, Jean-Philippe Herbaux, Yvette Game, Carole Toïgo, Emmanuelle Gilot‐Fromont, Sophie Rossi, Jean Hars
Software Mentions: 4
Published: over 8 years ago

10.1186/s13059-017-1159-5

RNF40 regulates gene expression in an epigenetic context-dependent manner
Cited by: 38
Author(s): Wanhua Xie, Sankari Nagarajan, Simon J. Baumgart, Robyn Laura Kosinsky, Zeynab Najafova, Vijayalakshmi Kari, Magali Hennion, Daniela Indenbirken, Stefan Bonn, Adam Grundhoff, Florian Wegwitz, Ahmed Mansouri, Steven A. Johnsen
Software Mentions: 4
Published: over 9 years ago

10.1093/beheco/arx188

Temporal migration patterns and mating tactics influence size-assortative mating in Rana temporaria
Cited by: 25
Author(s): Carolin Dittrich, Ariel Rodríguez, Ori Segev, Sanja Drakulić, Heike Feldhaar, Miguel Vences, Mark‐Oliver Rödel
Software Mentions: 4
Published: over 8 years ago

10.1186/s12889-020-09278-0

Spatial analysis of factors associated with HIV infection in Malawi: indicators for effective prevention
Cited by: 41
Author(s): Jerry John Nutor, Henry Ofori Duah, Pascal Agbadi, Precious Adade Duodu, Kaboni Whitney Gondwe
Software Mentions: 4
Published: about 6 years ago

10.3390/cancers12020381

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models
Cited by: 16
Author(s): J. Tyson McDonald, R. Stainforth, Jack Miller, Thomas J. Cahill, Willian A. da Silveira, Komal S. Rathi, Gary Hardiman, Deanne Taylor, Sylvain V. Costes, Vinita Chauhan, Robert Meller, Afshin Beheshti
Software Mentions: 4
Published: over 6 years ago

10.1186/s13059-015-0843-6

Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR
Cited by: 291
Author(s): Wei Li, Johannes Köster, Xu Han, Chen Hao Chen, Tengfei Xiao, Jun S. Liu, Myles Brown, X. Shirley Liu
Software Mentions: 4
Published: over 10 years ago

10.3389/fmicb.2020.01077

The Gene Flow Direction of Geographically Distinct Phytophthora infestans Populations in China Corresponds With the Route of Seed Potato Exchange
Cited by: 6
Author(s): Fangluan Gao, Changsheng Chen, Benjin Li, Qiyong Weng, Qinghe Chen
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.6233

Comparing sea ice habitat fragmentation metrics using integrated step selection analysis
Cited by: 5
Author(s): Brooke A. Biddlecombe, Erin M. Bayne, Nicholas J. Lunn, David McGeachy, Andrew E. Derocher
Software Mentions: 4
Published: over 6 years ago

10.1080/20002297.2021.1946316

Microbial characteristics across different tongue coating types in a healthy population
Cited by: 5
Author(s): Hairong Chen, Qingwei Li, Min Li, Sheng Liu, Chensi Yao, Zixiong Wang, Zhixin Zhao, Ping Liu, Fan Yang, Xinjian Li, Jun Wang, Yi-Xin Zeng, Xiaolin Tong
Software Mentions: 4
Published: over 5 years ago

10.1186/s13040-017-0155-3

Ten quick tips for machine learning in computational biology
Cited by: 552
Author(s): Davide Chicco
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0149282

Large-Scale Modelling of the Environmentally-Driven Population Dynamics of Temperate Aedes albopictus (Skuse)
Cited by: 42
Author(s): Kamil Erguler, Stephanie E. Smith-Unna, Joanna Waldock, Yiannis Proestos, George K. Christophides, Jos Lelieveld, Paul E. Parham
Software Mentions: 4
Published: over 10 years ago

10.3390/plants9081019

High pH Stress Affects Root Morphology and Nutritional Status of Hydroponically Grown Rhododendron (Rhododendron spp.)
Cited by: 5
Author(s): Ashley J. Turner, Camila I. Arzola, Gerardo H. Nunez
Software Mentions: 4
Published: almost 6 years ago

10.1002/emmm.201201974

Alteration of the micro <scp>RNA</scp> network during the progression of Alzheimer's disease
Cited by: 393
Author(s): Pierre Lau, Koen Bossers, Rekin’s Janky, Evgenia Salta, Carlo Sala Frigerio, Shahar Barbash, Roy Rothman, Annerieke Sierksma, Amantha Thathiah, David Greenberg, Aikaterini S. Papadopoulou, Tilmann Achsel, Torik Ayoubi, Hermona Soreq, Joost Verhaagen, Dick F. Swaab, Stein Aerts, Bart De Strooper
Software Mentions: 4
Published: almost 13 years ago

10.1186/s12935-021-01939-3

Identification of an immune-related signature indicating the dedifferentiation of thyroid cells
Cited by: 10
Author(s): Xuemin Wang, Wen Peng, Chunyan Li, Rujia Qin, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 4
Published: over 5 years ago

10.3399/bjgpopen17X100677

Delivering integrated child development care in Pakistan: protocol for a clustered randomised trial
Cited by: 7
Author(s): Muhammad Amir Khan, Syeda Somyyah Owais, Claire Blacklock, Shirin Anil, Sehrish Ishaq, Shazia Maqbool, Haroon Khan, Fareed Aslam Minhas, John Walley
Software Mentions: 4
Published: over 9 years ago

10.1186/s12864-015-2277-7

Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome
Cited by: 42
Author(s): Erik A. Visser, Jill L. Wegrzyn, Emma T. Steenkmap, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 4
Published: over 10 years ago

10.1186/s13040-018-0171-y

Connecting genetics and gene expression data for target prioritisation and drug repositioning
Cited by: 20
Author(s): Enrico Ferrero, Pankaj Agarwal
Software Mentions: 4
Published: about 8 years ago

10.1186/s12935-020-01525-z

MiR-1231 decrease the risk of cancer-related mortality in patients combined with non-small cell lung cancer and diabetes mellitus
Cited by: 3
Author(s): Jing Li, Jialiang Xu, Zhijun Cao, Shouzuo Du, Luyu Zhang
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-92031-3

Extrinsic factors, endocrine mechanisms, and behavioral indicators of migratory restlessness in wintering whooper swans (Cygnus cygnus)
Cited by: 1
Author(s): Liangliang Yang, Wenxia Wang, Ping Sun, Shiyang Huang, Ruyi Gao, Desheng Kong, Wendong Ru, Torsten Wronski, Guogang Zhang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: about 5 years ago