10.1107/S1600576719012044

<i>DatView</i>: a graphical user interface for visualizing and querying large data sets in serial femtosecond crystallography
Cited by: 1
Author(s): Natasha Stander, Petra Fromme, Nadia A. Zatsepin
Software Mentions: 4
Published: over 6 years ago

10.3390/s19235310

Robust Cylindrical Panorama Stitching for Low-Texture Scenes Based on Image Alignment Using Deep Learning and Iterative Optimization
Cited by: 9
Author(s): Kang Lai, Yingmei Wei, Jie Jiang, Yi Xie
Software Mentions: 4
Published: over 6 years ago

10.1038/s41419-020-03232-z

Molecular subtype-specific responses of colon cancer cells to the SMAC mimetic Birinapant
Cited by: 12
Author(s): Michael Fichtner, Emir Bozkurt, Manuela Salvucci, Christopher McCann, Katherine McAllister, Luise Halang, Heiko Düßmann, Sinéad Kinsella, Nyree Crawford, Tamas Sessler, Daniel B. Longley, Jochen H M Prehn
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-020-1006-1

Multidimensional imaging of liver injury repair in mice reveals fundamental role of the ductular reaction
Cited by: 22
Author(s): Kenji Kamimoto, Yasuhiro Nakano, Kota Kaneko, Atsushi Miyajima, Tohru Itoh
Software Mentions: 4
Published: about 6 years ago

10.1002/mas.21522

The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5
Cited by: 10
Author(s): Manor Askenazi, Hisham Ben Hamidane, Johannes Graumann
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pgen.1009557

Copy number signature analysis tool and its application in prostate cancer reveals distinct mutational processes and clinical outcomes
Cited by: 51
Author(s): S Wang, Huimin Li, Mei Song, Ziyu Tao, Tao Wu, Zaoke He, Xiangyu Zhao, Kai Wu, Xue Song Liu
Software Mentions: 4
Published: about 5 years ago

10.1111/1751-7915.12751

The dynamics of the bacterial communities developed in maize silage
Cited by: 66
Author(s): Javad Gharechahi, Zohreh Akhavan Kharazian, Sajjad Sarikhan, Gholamreza Salehi Jouzani, Mahnaz Aghdasi, Ghasem Hosseini Salekdeh
Software Mentions: 4
Published: about 9 years ago

10.1186/1471-2105-10-221

An introduction to scripting in Ruby for biologists
Cited by: 15
Author(s): Jan Aerts, Andy Law
Software Mentions: 4
Published: about 17 years ago

10.12688/f1000research.9037.2

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes
Cited by: 74
Author(s): Felix Krueger, Simon Andrews
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-019-46686-8

High-throughput stability screening for detergent-solubilized membrane proteins
Cited by: 69
Author(s): Vadim Kotov, Kim Bartels, Katharina Veith, Inokentijs Josts, Udaya Kumar Tiruttani Subhramanyam, Christian Günther, Jörg Labahn, Thomas C. Marlovits, Isabel Moraes, Henning Tidow, Christian Löw, María García-Alai
Software Mentions: 4
Published: about 7 years ago

10.1098/rsif.2019.0474

Modelling microbial communities using biochemical resource allocation analysis
Cited by: 13
Author(s): Suraj Sharma, Ralf Steuer
Software Mentions: 4
Published: over 6 years ago

10.1186/s12885-020-07022-w

Meeting psychosocial needs to improve health: a prospective cohort study
Cited by: 0
Author(s): Austyn Snowden, Jenny Young, Jan Savinc
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-47857-3

Real-Time Selective Sequencing with RUBRIC: Read Until with Basecall and Reference-Informed Criteria
Cited by: 37
Author(s): Harrison Edwards, Raga Krishnakumar, Anupama Sinha, Sara W. Bird, Kamlesh D. Patel, Michael Bartsch
Software Mentions: 4
Published: almost 7 years ago

10.1111/tpj.14312

μ<scp>CT</scp> trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
Cited by: 19
Author(s): Nathan Hughes, Hugo R. Oliveira, Nick Fradgley, Fiona Corke, James Cockram, John H. Doonan, Cândida Nibau
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1002952

Spatial Pattern Dynamics of 3D Stem Cell Loss of Pluripotency via Rules-Based Computational Modeling
Cited by: 31
Author(s): David W. White, Melissa A. Kinney, Todd C. McDevitt, Melissa L. Kemp
Software Mentions: 4
Published: over 13 years ago

10.1186/1471-2202-13-S1-P13

A high-level, simulator independent, Python library for simulating small networks of multicompartmental neurons
Cited by: 0
Author(s): Michael Hull, David Willshaw
Software Mentions: 4
Published: about 14 years ago

10.3389/fonc.2021.620154

Bioinformatics-Based Identification of HDAC Inhibitors as Potential Drugs to Target EGFR Wild-Type Non-Small-Cell Lung Cancer
Cited by: 0
Author(s): Yizhe Wang, Chunlei Zheng, Wenqing Lü, Duo Wang, Cheng Yang, Yang Chen, Kezuo Hou, Jianfei Qi, Yunpeng Liu, Xiaofang Che, Xuejun Hu
Software Mentions: 4
Published: over 5 years ago

10.3390/metabo11090633

A Targeted Serum Metabolomics GC-MS Approach Identifies Predictive Blood Biomarkers for Retained Placenta in Holstein Dairy Cows
Cited by: 4
Author(s): Guanshi Zhang, Dawid Tobolski, Grzegorz Zwierzchowski, Rupasri Mandal, David S. Wishart, Burim N. Ametaj
Software Mentions: 4
Published: almost 5 years ago

10.15252/embr.201948882

Mitochondrial protein biogenesis in the synapse is supported by local translation
Cited by: 56
Author(s): Bożena Kuźniewska, Dominik Cysewski, Michał Wasilewski, Paulina Sakowska, Jacek Miłek, Tomasz M. Kuliński, M. Winiarski, Paweł Kozielewicz, Ewelina Knapska, Michał Dadlez, Agnieszka Chacińska, Andrzej Dziembowski, Magdalena Dziembowska
Software Mentions: 4
Published: about 6 years ago

10.3390/s21134546

Diagnostic of Operation Conditions and Sensor Faults Using Machine Learning in Sucker-Rod Pumping Wells
Cited by: 6
Author(s): João Nascimento, André Laurindo Maitelli, C. W. S. P. Maitelli, Anderson Luiz de Oliveira Cavalcanti
Software Mentions: 4
Published: about 5 years ago

10.1093/gigascience/gix061

A recurrence-based approach for validating structural variation using long-read sequencing technology
Cited by: 20
Author(s): Xuefang Zhao, Alexandra M. Weber, Ryan E. Mills
Software Mentions: 4
Published: about 9 years ago

10.3389/fncir.2014.00005

A spiking neural network model of self-organized pattern recognition in the early mammalian olfactory system
Cited by: 22
Author(s): Bernhard Kaplan, Anders Lansner
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0121233

Disease Specific Productivity of American Cancer Hospitals
Cited by: 0
Author(s): Jeffrey A. Goldstein, Vinay Prasad
Software Mentions: 4
Published: over 11 years ago

10.1364/BOE.416737

Dual-view light-sheet imaging through a tilted glass interface using a deformable mirror
Cited by: 7
Author(s): Nikita Vladimirov, Friedrich Preußer, Jan Wiśniewski, Ziv Yaniv, Ravi A. Desai, Andrew Woehler, Stephan Preibisch
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009774

A scalable Drosophila assay for clinical interpretation of human PTEN variants in suppression of PI3K/AKT induced cellular proliferation
Cited by: 4
Author(s): Payel Ganguly, Landiso Madonsela, Jesse T. Chao, Christopher Loewen, Timothy P. O’Connor, Esther M. Verheyen, Douglas W. Allan
Software Mentions: 4
Published: almost 5 years ago

10.3389/fninf.2018.00049

Uncertainpy: A Python Toolbox for Uncertainty Quantification and Sensitivity Analysis in Computational Neuroscience
Cited by: 60
Author(s): Simen Tennøe, Geir Halnes, Gaute T. Einevoll
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0021931

Real-Time PyMOL Visualization for Rosetta and PyRosetta
Cited by: 51
Author(s): Evan H. Baugh, Sergey Lyskov, Brian D. Weitzner, Jeffrey J. Gray
Software Mentions: 4
Published: almost 15 years ago

10.1038/s41598-020-74775-6

A digital reconstruction of the 1630–1631 large plague outbreak in Venice
Cited by: 6
Author(s): Gianrocco Lazzari, Giovanni Colavizza, Fabio Bortoluzzi, Davide Drago, Andrea Erboso, Francesca Zugno, Frédé́ric Kaplan, Marcel Salathé
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.dib.2021.107360

Dataset of COVID-19 outbreak and potential predictive features in the USA
Cited by: 3
Author(s): Arezoo Haratian, Hadi Fazelinia, Zeinab Maleki, Pouria Ramazi, Hao Wang, Mark A. Lewis, Russell Greiner, David S. Wishart
Software Mentions: 4
Published: almost 5 years ago

10.1155/2017/2794040

The Effect of Different Pollination on the Expression of Dangshan Su Pear MicroRNA
Cited by: 12
Author(s): Xi Cheng, Chongchong Yan, Jinyun Zhang, Chenhui Ma, Shumei Li, Qing Jin, Nan Zhang, Yunpeng Cao, Yi Lin, Yongping Cai
Software Mentions: 4
Published: over 9 years ago

10.3390/plants10040765

Proteomic Identification and Meta-Analysis in Salvia hispanica RNA-Seq de novo Assemblies
Cited by: 1
Author(s): Ashwil Klein, Lizex Husselmann, Achmat Williams, Liam Bell, Bret Cooper, Brent Ragar, David L. Tabb
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008377

Active probing to highlight approaching transitions to ictal states in coupled neural mass models
Cited by: 2
Author(s): Vinícius Rezende Carvalho, Márcio Flávio Dutra Moraes, Sydney S. Cash, Eduardo M. A. M. Mendes
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pgen.1009221

Short-range template switching in great ape genomes explored using pair hidden Markov models
Cited by: 10
Author(s): Conor R Walker, Aylwyn Scally, Nicola De Maio, Nick Goldman
Software Mentions: 4
Published: over 5 years ago

10.3389/fcell.2021.715762

Probing Synergistic Targets by Natural Compounds for Hepatocellular Carcinoma
Cited by: 2
Author(s): Jian Gao, Zuojing Yin, Zhuanbin Wu, Zhonghua Sheng, Chao Ma, Rui Chen, Xiongwen Zhang, Kailin Tang, Jian Fei, Zhiwei Cao
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.10558

HiCEnterprise: identifying long range chromosomal contacts in Hi-C data
Cited by: 1
Author(s): Hanna Kranas, Irina Tuszyńska, Bartek Wilczyński
Software Mentions: 4
Published: over 5 years ago

10.3389/fninf.2015.00024

NeuroManager: a workflow analysis based simulation management engine for computational neuroscience
Cited by: 12
Author(s): David B. Stockton, Fidel Santamarı́a
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0233336

Artificial intelligence may offer insight into factors determining individual TSH level
Cited by: 7
Author(s): Prasanna Santhanam, Tanmay Nath, Faiz Khan Mohammad, Rexford S. Ahima
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0065774

Scaling-Laws of Human Broadcast Communication Enable Distinction between Human, Corporate and Robot Twitter Users
Cited by: 47
Author(s): Gabriela Tavares, A. Aldo Faisal
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0009595

The Viscoelastic Properties of Passive Eye Muscle in Primates. III: Force Elicited by Natural Elongations
Cited by: 19
Author(s): Christian Quaia, Howard S. Ying, Lance M. Optican
Software Mentions: 4
Published: over 16 years ago

10.1002/cam4.4108

Expression of 5‐methylcytosine regulators is highly associated with the clinical phenotypes of prostate cancer and <i>DNMTs</i> expression predicts biochemical recurrence
Cited by: 3
Author(s): Lin Wang, Guoping Ren, Biaoyang Lin
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-8-232

TMM@: a web application for the analysis of transmembrane helix mobility
Cited by: 2
Author(s): Lars Skjærven, Inge Jonassen, Nathalie Reuter
Software Mentions: 4
Published: about 19 years ago

10.1186/s13059-017-1290-3

A tandem simulation framework for predicting mapping quality
Cited by: 14
Author(s): Ben Langmead
Software Mentions: 4
Published: almost 9 years ago

10.7150/thno.55676

A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Cited by: 12
Author(s): Jin Song, Shiyong Ma, Lori J. Sokoll, Rodrigo Vargas Eguez, Naseruddin Höti, Hui Zhang, Phaedre Mohr, Renu Dua, Dattatraya Patil, Kristen Douglas May, Sierra Williams, Rebecca S. Arnold, Martin G. Sanda, Daniel W. Chan, Zhen Zhang
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0203839

Using wearable sensors to classify subject-specific running biomechanical gait patterns based on changes in environmental weather conditions
Cited by: 40
Author(s): Nizam Uddin Ahamed, Dylan Kobsar, Lauren C. Benson, Christian A. Clermont, Russell Kohrs, Sean T. Osis, Reed Ferber
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12863-016-0388-z

Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms
Cited by: 40
Author(s): Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud‐Haond, Solenn Stoeckel
Software Mentions: 4
Published: about 10 years ago

10.3390/microorganisms9040841

A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses
Cited by: 29
Author(s): Denis Kutnjak, Lucie Tamisier, Ian Adams, Neil Boonham, Thierry Candresse, Michela Chiumenti, Kris De Jonghe, Jan Kreuze, Marie Lefebvre, Gonçalo Silva, Martha Malapi‐Wight, Paolo Margaria, Irena Mavrič Pleško, Sam McGreig, Laura Miozzi, Benoît Remenant, Jean-Sébastien Reynard, Johan Rollin, M. Rott, Olivier Schumpp, Sébastien Massart, Annelies Haegeman
Software Mentions: 4
Published: over 5 years ago

10.7150/jca.59933

Hallmark microRNA signature in liquid biopsy identifies hepatocellular carcinoma and differentiates it from liver metastasis
Cited by: 6
Author(s): Vernon G. Wong, Ming-In Wong, Chi-Tat Lam, Maria Li Lung, Ka-On Lam, Victor Lee
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-020-01973-w

Multiplexed capture of spatial configuration and temporal dynamics of locus-specific 3D chromatin by biotinylated dCas9
Cited by: 27
Author(s): Xin Liu, Yong Chen, Yuannyu Zhang, Nan Liu, Giovanni A. Botten, Hui Cao, Stuart H. Orkin, Michael Q. Zhang, Jian Xu
Software Mentions: 4
Published: over 6 years ago

10.1016/j.molcel.2019.11.010

Functional Translatome Proteomics Reveal Converging and Dose-Dependent Regulation by mTORC1 and eIF2α
Cited by: 70
Author(s): Kevin Klann, Georg Tascher, Christian Münch
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1009127

Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread
Cited by: 2
Author(s): J. R. Giles, Derek A. T. Cummings, Bryan T. Grenfell, Andrew J. Tatem, Elisabeth zu Erbach-Schoenberg, C Jessica E Metcalf, Amy Wesolowski
Software Mentions: 4
Published: almost 5 years ago

10.3390/biom11040549

Conformational Plasticity-Rigidity Axis of the Coagulation Factor VII Zymogen Elucidated by Atomistic Simulations of the N-Terminally Truncated Factor VIIa Protease Domain
Cited by: 6
Author(s): Jesper J. Madsen, Ole H. Olsen
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2020.01764

Hepatocellular Carcinoma Within the Milan Criteria: A Novel Inflammation-Based Nomogram System to Assess the Outcomes of Ablation
Cited by: 8
Author(s): Shuanggang Chen, Weimei Ma, Fei Cao, Lujun Shen, Han Qi, Lin Xie, Ying Wu, Weijun Fan
Software Mentions: 4
Published: almost 6 years ago

10.3389/fcell.2021.652848

An Optical Coherence Tomography-Based Deep Learning Algorithm for Visual Acuity Prediction of Highly Myopic Eyes After Cataract Surgery
Cited by: 9
Author(s): Ling Wei, Wenwen He, Jinrui Wang, Keke Zhang, Yu Du, Jiao Qi, Jiaqi Meng, Xiaodi Qiu, Lei Cai, Qi Fan, Zhennan Zhao, Yanlin Tang, Shuang Ni, Haike Guo, Yunxiao Song, Xixi He, Dayong Ding, Yi Lu
Software Mentions: 4
Published: about 5 years ago

10.1128/mSystems.00211-19

Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning
Cited by: 16
Author(s): Finlay Maguire, Muhammad Attiq Rehman, Catherine D. Carrillo, Moussa S. Diarra, Robert G. Beiko
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0230327

Simulation model of CA1 pyramidal neurons reveal opposing roles for the Na+/Ca2+ exchange current and Ca2+-activated K+ current during spike-timing dependent synaptic plasticity
Cited by: 2
Author(s): Damien M. O’Halloran
Software Mentions: 4
Published: over 6 years ago

10.1007/s12020-020-02355-9

Mapping endocrine toxicity spectrum of immune checkpoint inhibitors: a disproportionality analysis using the WHO adverse drug reaction database, VigiBase
Cited by: 26
Author(s): Xuefeng Bai, Xiahong Lin, Kainan Zheng, Xiaoyu Chen, Xiaohong Wu, Yinqiong Huang, Yong Zhuang
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1008833

PDKit: A data science toolkit for the digital assessment of Parkinson’s Disease
Cited by: 2
Author(s): Cosmin Stamate, Joan Saez Pons, David Weston, George Roussos
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.7983

Rolling pits of Hartmann’s mountain zebra ( <i>Zebra equus hartmannae</i> ) increase vegetation diversity and landscape heterogeneity in the Pre‐Namib
Cited by: 2
Author(s): Thomas C. Wagner, Kenneth Uiseb, Christina Fischer
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12936-019-2936-2

Semi-field evaluation of the cumulative effects of a “Lethal House Lure” on malaria mosquito mortality
Cited by: 7
Author(s): Antoine M. G. Barreaux, Welbeck A. Oumbouke, Innocent Z. Tia, N'Guessan Brou, Alphonsine A. Koffi, Raphaël N’Guessan, Matthew B. Thomas
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pgen.1005619

Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection
Cited by: 18
Author(s): Musa A. Hassan, Kirk D. C. Jensen, Vincent Butty, Kenneth H. Hu, Erwan Boedec, Pjotr Prins, Jeroen P. J. Saeij
Software Mentions: 4
Published: almost 11 years ago

10.12688/wellcomeopenres.16584.2

­­­­­­­A type I IFN, prothrombotic hyperinflammatory neutrophil signature is distinct for COVID-19 ARDS­­­
Cited by: 31
Author(s): Leila Reyes, Manuel A. Sanchez-Garcia, Tyler Morrison, Andy J. M. Howden, Emily R. Watts, Simone Arienti, Pranvera Sadiku, Patricia Coelho, Ananda S. Mirchandani, Ailiang Zhang, David Hope, Sarah Clark, Jo Singleton, Shonna Johnston, Robert Grecian, Azin Poon, Sarah McNamara, Ian Harper, Max Head Fourman, Alejandro Brenes, Shalini Pathak, Adam Lloyd, Giovanny Rodriguez Blanco, Alex von Kriegsheim, Bart Ghesquière, Wesley Vermaelen, Camila Takeno Cologna, Kevin Dhaliwal, Nik Hirani, David H. Dockrell, Moira K. B. Whyte, David Griffith, Doreen A. Cantrell, Sarah R. Walmsley
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-019-0722-6

Clustering co-abundant genes identifies components of the gut microbiome that are reproducibly associated with colorectal cancer and inflammatory bowel disease
Cited by: 28
Author(s): Samuel S. Minot, Amy Willis
Software Mentions: 4
Published: almost 7 years ago

10.1002/ece3.6053

One size does not fit all: Customizing MCMC methods for hierarchical models using NIMBLE
Cited by: 14
Author(s): Lauren C. Ponisio, Perry de Valpine, Nicholas Michaud, Daniel Turek
Software Mentions: 4
Published: over 6 years ago

10.1155/2017/5719461

Seasonal Variation in Vitamin D in Association with Age, Inflammatory Cytokines, Anthropometric Parameters, and Lifestyle Factors in Older Adults
Cited by: 39
Author(s): Leticia Elizondo‐Montemayor, Elena C. Castillo, Carlos E. Rodríguez López, José R Villarreal-Calderón, Merit Gómez-Carmona, Sofia Tenorio-Martínez, Bianca Nieblas, Gerardo García‐Rivas
Software Mentions: 4
Published: over 9 years ago

10.3390/cancers12092474

Identification of Clinical and Socioeconomic Predictors of Adjuvant Therapy after Trans-Oral Robotic Surgery in Patients with Oropharyngeal Squamous Cell Carcinoma
Cited by: 5
Author(s): Sujith Baliga, Brett Klamer, Sachin R. Jhawar, M.E. Gamez, Darrion Mitchell, Adriana Blakaj, J.C. Grecula, Ulysses Gardner, Khaled Dibs, Matthew Old, Nolan B. Seim, Stephen Y. Kang, Ricardo L. Carrau, Amit Agrawal, Vidhya Karivedu, Priyanka Bhateja, Enver Özer, James W. Rocco, Marcelo Bonomi, Dukagjin Blakaj
Software Mentions: 4
Published: almost 6 years ago

10.3390/cancers12061535

TP53 Status, Patient Sex, and the Immune Response as Determinants of Lung Cancer Patient Survival
Cited by: 21
Author(s): Donald Freudenstein, Cassandra Litchfield, Franco Caramia, Gavin Wright, Benjamin Solomon, David Ball, Simon P. Keam, Paul J. Neeson, Ygal Haupt, Sue Haupt
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0234414

Is amblyopia associated with school readiness and cognitive performance during early schooling? Findings from the Millennium Cohort Study
Cited by: 6
Author(s): Lisanne A. Gitsels, Mario Cortina‐Borja, Jugnoo S Rahi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0072420

Are Regional Habitat Models Useful at a Local-Scale? A Case Study of Threatened and Common Insectivorous Bats in South-Eastern Australia
Cited by: 5
Author(s): Anna McConville, Bradley Law, Michael Mahony
Software Mentions: 4
Published: almost 13 years ago

10.3389/fonc.2020.574977

Serum RNA Profiling in the 10-Years Period Prior to Diagnosis of Testicular Germ Cell Tumor
Cited by: 6
Author(s): Joshua Burton, Sinan Uğur Umu, Hilde Langseth, Tom Grotmol, Tom Kristian Grimsrud, Trine B. Haugen, Trine B. Rounge
Software Mentions: 4
Published: almost 6 years ago

10.3390/mi11090838

Investigating the Association between Motor Function, Neuroinflammation, and Recording Metrics in the Performance of Intracortical Microelectrode Implanted in Motor Cortex
Cited by: 0
Author(s): Evon S. Ereifej, Youjun Li, Monika Goss-Varley, You Joung Kim, Seth M. Meade, Keying Chen, Jacob Rayyan, Feng He, Keith R. Dona, Justin A. McMahon, Dawn M. Taylor, Jeffrey R. Capadona, Jiayang Sun
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0248459

Evaluating the effect of stand properties and site conditions on the forest reflectance from Sentinel-2 time series
Cited by: 9
Author(s): Ewa Grabska, Jarosław Socha
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.6001

RAPTURE (RAD capture) panel facilitates analyses characterizing sea lamprey reproductive ecology and movement dynamics
Cited by: 27
Author(s): Nicholas M. Sard, Seth Smith, Jared J. Homola, Jeannette Kanefsky, Gale A. Bravener, Jean V. Adams, Christopher M. Holbrook, Peter J. Hrodey, Kevin Tallon, Kim T. Scribner
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0221855

Preferences and perceptions of the recreational spearfishery of the Great Barrier Reef
Cited by: 5
Author(s): Thea E. Bradford, Kennedy Wolfe, Peter J. Mumby
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0249792

Face masks reduce emotion-recognition accuracy and perceived closeness
Cited by: 130
Author(s): Felix Grundmann, Kai Epstude, Susanne Scheibe
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0236982

Is short-term-variation of fetal-heart-rate a better predictor of fetal acidaemia in labour? A feasibility study
Cited by: 5
Author(s): Habiba Kapaya, Richard Jacques, Thomas Almond, Miss Hilary Rosser, Dilly Anumba
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13071-019-3656-8

Predicting West Nile virus transmission in North American bird communities using phylogenetic mixed effects models and eBird citizen science data
Cited by: 21
Author(s): Morgan P. Kain, Benjamin M. Bolker
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0089982

Giants, Dwarfs and the Environment – Metamorphic Trait Plasticity in the Common Frog
Cited by: 18
Author(s): Franziska Grözinger, Jürgen Thein, Heike Feldhaar, Mark‐Oliver Rödel
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0238057

First field estimation of greenhouse gas release from European soil-dwelling Scarabaeidae larvae targeting the genus Melolontha
Cited by: 2
Author(s): Carolyn-Monika Görres, Claudia Kammann
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0123346

Community-Wide Spatial and Temporal Discordances of Seed-Seedling Shadows in a Tropical Rainforest
Cited by: 9
Author(s): Débora Cristina Rother, Marco A. Pizo, Tadeu Siqueira, Ricardo Ribeiro Rodrigues, Pedro Jordano
Software Mentions: 4
Published: over 11 years ago

10.1186/s13073-021-00922-x

High-grade serous tubo-ovarian cancer refined with single-cell RNA sequencing: specific cell subtypes influence survival and determine molecular subtype classification
Cited by: 52
Author(s): Siel Olbrecht, Pieter Busschaert, Jun Qian, Adriaan Vanderstichele, Liselore Loverix, Toon Van Gorp, Els Van Nieuwenhuysen, Sileny Han, Annick Van den Broeck, An Coosemans, Anne‐Sophie Van Rompuy, Diether Lambrechts, Ignace Vergote
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-7-359

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
Cited by: 321
Author(s): Ian B. Jeffery, Desmond G. Higgins, Aedín C. Culhane
Software Mentions: 4
Published: about 20 years ago

10.1186/s13071-021-04827-x

Mosquito blood-feeding patterns and nesting behavior of American crows, an amplifying host of West Nile virus
Cited by: 7
Author(s): Sarah S. Wheeler, Conor C. Taff, William K. Reisen, Andrea K. Townsend
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2019.01249

Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence
Cited by: 9
Author(s): Anna Furches, David Kainer, Deborah Weighill, Annabel Large, Piet Jones, Angelica M. Walker, Jonathon Romero, João Gabriel Felipe Machado Gazolla, Wayne Joubert, Manesh Shah, Jared Streich, Priya Ranjan, Jeremy Schmutz, Avinash Sreedasyam, David Macaya‐Sanz, Nan Zhao, Madhavi Z. Martin, Xiaolan Rao, Richard A. Dixon, Stephen P. DiFazio, Timothy J. Tschaplinski, Jay Chen, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 4
Published: almost 7 years ago

10.1186/2041-1480-1-8

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
Cited by: 33
Author(s): Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki‐Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Seiichiro Kawashima, Hong‐Woo Chun, Jan Aerts, Bruno Aranda, Lord Hendrix Barboza, Raoul Jean Pierre Bonnal, Richard Bruskiewich, Jan Christian Bryne, José Marı́a Fernández, Akira Funahashi, Paul M. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Tom Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Łukasz Salwiński, Mark Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Tazuko Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi
Software Mentions: 4
Published: over 16 years ago

10.1371/journal.pone.0252223

Global antibiotic dosing strategies in hospitalised children: Characterising variation and implications for harmonisation of international guidelines
Cited by: 1
Author(s): Michelle N. Clements, Neal Russell, Julia Bielicki, Sally Ellis, Silke Gastine, Yingfen Hsia, Joseph F. Standing, A. Sarah Walker, Mike Sharland
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0170137

Opportunities for Integrated Ecological Analysis across Inland Australia with Standardised Data from Ausplots Rangelands
Cited by: 25
Author(s): Greg R. Guerin, Ben Sparrow, Andrew Tokmakoff, Anita K. Smyth, Emrys Leitch, Zdravko Baruch, Andrew J. Lowe
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0145493

Potential of Diffusion Tensor Imaging and Relaxometry for the Detection of Specific Pathological Alterations in Parkinson's Disease (PD)
Cited by: 13
Author(s): Regina Esterhammer, Klaus Seppi, Eva Reiter, Bernadette Pinter, Christoph Mueller, Christian Kremser, Tanja Zitzelsberger, Michael Nocker, Christoph Scherfler, Werner Poewe, Michael Schocke
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0141524

Application of Penalized Regression Techniques in Modelling Insulin Sensitivity by Correlated Metabolic Parameters
Cited by: 17
Author(s): Christian Göbl, Latife Bozkurt, Andrea Tura, Giovanni Pacini, Alexandra Kautzky–Willer, Martina Mittlböck
Software Mentions: 4
Published: over 10 years ago

10.3390/cancers12040963

Analysis of the Circadian Regulation of Cancer Hallmarks by a Cross-Platform Study of Colorectal Cancer Time-Series Data Reveals an Association with Genes Involved in Huntington’s Disease
Cited by: 14
Author(s): Müge Yalçin, Rukeia El-Athman, Koliane Ouk, Josef Priller, Angela Relógio
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0244430

PFP-WGAN: Protein function prediction by discovering Gene Ontology term correlations with generative adversarial networks
Cited by: 7
Author(s): Seyyede Fatemeh Seyyedsalehi, Mahdieh Soleymani, Hamid R. Rabiee, Mohammad R. K. Mofrad
Software Mentions: 4
Published: over 5 years ago

10.1186/s13071-020-04534-z

Trypanosoma cruzi infection in Triatoma infestans and high levels of human–vector contact across a rural-to-urban gradient in the Argentine Chaco
Cited by: 10
Author(s): Alejandra Alvedro, María Sol Gaspe, Hannah Milbourn, Natalia Paula Macchiaverna, Mariano Alberto Laiño, Gustavo Fabián Enriquez, Ricardo E. Gürtler, Marta Victoria Cardinal
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0149498

Measuring Progress on the Control of Porcine Reproductive and Respiratory Syndrome (PRRS) at a Regional Level: The Minnesota N212 Regional Control Project (Rcp) as a Working Example
Cited by: 17
Author(s): Pablo Valdes–Donoso, Lovell S. Jarvis, Dave Wright, Julio Álvarez, Andrés Perez
Software Mentions: 4
Published: over 10 years ago

10.3390/e22091057

Software Requirements Classification Using Machine Learning Algorithms
Cited by: 42
Author(s): Edna Dias Canedo, Bruno Cordeiro Mendes
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0105869

Deforestation and Benthic Indicators: How Much Vegetation Cover Is Needed to Sustain Healthy Andean Streams?
Cited by: 49
Author(s): Carlos Iñiguez–Armijos, A. Leiva, Hans‐Georg Frede, Henrietta Hampel, Lutz Breuer
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0235009

Identifying hotspots of cardiometabolic outcomes based on a Bayesian approach: The example of Chile
Cited by: 3
Author(s): Gloria Aguayo, Anna Schritz, María Ruiz-Castell, Luís Villarroel, Gonzalo Valdívia, Guy Fagherazzi, Daniel R. Witte, Andrew Lawson
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0167259

Effects of Recreation on Animals Revealed as Widespread through a Global Systematic Review
Cited by: 153
Author(s): Courtney L. Larson, Sarah E. Reed, Adina M. Merenlender, Kevin R. Crooks
Software Mentions: 4
Published: over 9 years ago

10.7554/eLife.15477

Increasing Notch signaling antagonizes PRC2-mediated silencing to promote reprograming of germ cells into neurons
Cited by: 31
Author(s): Stefanie Seelk, Irene Adrian‐Kalchhauser, Balázs Hargitai, Martina Hajdůšková, Silvia Gutnik, Baris Tursun, Rafal Ciosk
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0091414

Where Wolves Kill Moose: The Influence of Prey Life History Dynamics on the Landscape Ecology of Predation
Cited by: 24
Author(s): Robert A. Montgomery, John A. Vucetich, Gary J. Roloff, Joseph K. Bump, Rolf O. Peterson
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0242941

Effects of transcranial magnetic stimulation over the left posterior superior temporal gyrus on picture-word interference
Cited by: 2
Author(s): Vitória Piai, Laura Nieberlein, Gesa Hartwigsen
Software Mentions: 4
Published: over 5 years ago

10.3389/fgene.2021.661296

Combined Analysis of Volatile Terpenoid Metabolism and Transcriptome Reveals Transcription Factors Related to Terpene Synthase in Two Cultivars of Dendrobium officinale Flowers
Cited by: 20
Author(s): Ninghong Li, Yan Dong, Min Lv, Qian Li, Xinwei Sun, Liu Lin, Yongping Cai, Honghong Fan
Software Mentions: 4
Published: over 5 years ago